Multiple sequence alignment - TraesCS1B01G361500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G361500 chr1B 100.000 2898 0 0 1 2898 589922072 589919175 0.000000e+00 5352.0
1 TraesCS1B01G361500 chr1B 87.088 1425 166 16 1016 2425 589898478 589897057 0.000000e+00 1596.0
2 TraesCS1B01G361500 chr1B 100.000 359 0 0 3067 3425 589919006 589918648 0.000000e+00 664.0
3 TraesCS1B01G361500 chr1B 75.483 673 131 25 1623 2269 591108325 591108989 7.190000e-77 298.0
4 TraesCS1B01G361500 chr1D 92.046 2238 122 26 699 2892 436098958 436096733 0.000000e+00 3096.0
5 TraesCS1B01G361500 chr1D 86.897 1473 169 22 1007 2462 436087221 436085756 0.000000e+00 1629.0
6 TraesCS1B01G361500 chr1D 96.520 661 23 0 1 661 349547088 349546428 0.000000e+00 1094.0
7 TraesCS1B01G361500 chr1D 75.120 623 123 22 1588 2185 436187982 436188597 2.620000e-66 263.0
8 TraesCS1B01G361500 chr1A 91.412 1770 122 16 1145 2891 533265854 533264092 0.000000e+00 2399.0
9 TraesCS1B01G361500 chr1A 87.041 1389 159 18 1016 2390 533258494 533257113 0.000000e+00 1548.0
10 TraesCS1B01G361500 chr1A 81.769 373 56 10 774 1140 533279295 533278929 5.550000e-78 302.0
11 TraesCS1B01G361500 chr1A 74.366 710 150 23 1588 2269 533446256 533446961 1.210000e-69 274.0
12 TraesCS1B01G361500 chr5A 94.538 952 50 2 1063 2012 489667280 489666329 0.000000e+00 1469.0
13 TraesCS1B01G361500 chr5A 97.416 658 17 0 1 658 689723180 689723837 0.000000e+00 1122.0
14 TraesCS1B01G361500 chr5A 95.745 235 10 0 1103 1337 631741922 631742156 2.490000e-101 379.0
15 TraesCS1B01G361500 chr6B 97.277 661 18 0 1 661 3584968 3584308 0.000000e+00 1122.0
16 TraesCS1B01G361500 chr6B 96.974 661 19 1 1 661 55680195 55680854 0.000000e+00 1109.0
17 TraesCS1B01G361500 chr5B 97.134 663 17 1 1 661 700524484 700523822 0.000000e+00 1118.0
18 TraesCS1B01G361500 chr4B 96.974 661 19 1 1 661 253775490 253774831 0.000000e+00 1109.0
19 TraesCS1B01G361500 chr4B 96.170 235 9 0 1103 1337 650953122 650953356 5.360000e-103 385.0
20 TraesCS1B01G361500 chr4B 94.595 37 2 0 2065 2101 3830195 3830159 1.330000e-04 58.4
21 TraesCS1B01G361500 chr7D 96.520 661 23 0 1 661 619380291 619380951 0.000000e+00 1094.0
22 TraesCS1B01G361500 chr6D 96.520 661 23 0 1 661 433718455 433719115 0.000000e+00 1094.0
23 TraesCS1B01G361500 chr3A 96.657 658 22 0 1 658 727535213 727534556 0.000000e+00 1094.0
24 TraesCS1B01G361500 chr7A 95.745 235 10 0 1103 1337 664110066 664110300 2.490000e-101 379.0
25 TraesCS1B01G361500 chr2A 95.930 172 7 0 1841 2012 58996068 58995897 2.600000e-71 279.0
26 TraesCS1B01G361500 chr4A 84.921 126 13 4 3197 3321 447147030 447146910 4.640000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G361500 chr1B 589918648 589922072 3424 True 3008 5352 100.000 1 3425 2 chr1B.!!$R2 3424
1 TraesCS1B01G361500 chr1B 589897057 589898478 1421 True 1596 1596 87.088 1016 2425 1 chr1B.!!$R1 1409
2 TraesCS1B01G361500 chr1B 591108325 591108989 664 False 298 298 75.483 1623 2269 1 chr1B.!!$F1 646
3 TraesCS1B01G361500 chr1D 436096733 436098958 2225 True 3096 3096 92.046 699 2892 1 chr1D.!!$R3 2193
4 TraesCS1B01G361500 chr1D 436085756 436087221 1465 True 1629 1629 86.897 1007 2462 1 chr1D.!!$R2 1455
5 TraesCS1B01G361500 chr1D 349546428 349547088 660 True 1094 1094 96.520 1 661 1 chr1D.!!$R1 660
6 TraesCS1B01G361500 chr1D 436187982 436188597 615 False 263 263 75.120 1588 2185 1 chr1D.!!$F1 597
7 TraesCS1B01G361500 chr1A 533264092 533265854 1762 True 2399 2399 91.412 1145 2891 1 chr1A.!!$R2 1746
8 TraesCS1B01G361500 chr1A 533257113 533258494 1381 True 1548 1548 87.041 1016 2390 1 chr1A.!!$R1 1374
9 TraesCS1B01G361500 chr1A 533446256 533446961 705 False 274 274 74.366 1588 2269 1 chr1A.!!$F1 681
10 TraesCS1B01G361500 chr5A 489666329 489667280 951 True 1469 1469 94.538 1063 2012 1 chr5A.!!$R1 949
11 TraesCS1B01G361500 chr5A 689723180 689723837 657 False 1122 1122 97.416 1 658 1 chr5A.!!$F2 657
12 TraesCS1B01G361500 chr6B 3584308 3584968 660 True 1122 1122 97.277 1 661 1 chr6B.!!$R1 660
13 TraesCS1B01G361500 chr6B 55680195 55680854 659 False 1109 1109 96.974 1 661 1 chr6B.!!$F1 660
14 TraesCS1B01G361500 chr5B 700523822 700524484 662 True 1118 1118 97.134 1 661 1 chr5B.!!$R1 660
15 TraesCS1B01G361500 chr4B 253774831 253775490 659 True 1109 1109 96.974 1 661 1 chr4B.!!$R2 660
16 TraesCS1B01G361500 chr7D 619380291 619380951 660 False 1094 1094 96.520 1 661 1 chr7D.!!$F1 660
17 TraesCS1B01G361500 chr6D 433718455 433719115 660 False 1094 1094 96.520 1 661 1 chr6D.!!$F1 660
18 TraesCS1B01G361500 chr3A 727534556 727535213 657 True 1094 1094 96.657 1 658 1 chr3A.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 691 0.107263 TGTGCTTCTGCCAGTGTCAA 60.107 50.0 0.0 0.0 38.71 3.18 F
690 693 0.181114 TGCTTCTGCCAGTGTCAACT 59.819 50.0 0.0 0.0 38.71 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 2266 0.251297 TCACCGTCCCCTTCTCGTAA 60.251 55.0 0.00 0.00 0.0 3.18 R
2667 2745 0.384309 TACGAGCTGCTGGTAATCCG 59.616 55.0 20.07 11.84 36.3 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 177 3.835395 TGGTGACAAGTTTCCAAAACCTT 59.165 39.130 0.00 0.00 37.44 3.50
341 344 7.671398 ACCCATTCTTCACTTAGAAATGTCATT 59.329 33.333 0.00 0.00 37.66 2.57
489 492 7.348080 AGTCAACTGTCCGATATAGAATTCA 57.652 36.000 8.44 0.00 0.00 2.57
566 569 7.439056 ACAACAAATGATTCAACAAATGAGACC 59.561 33.333 0.00 0.00 39.77 3.85
639 642 7.667635 TGTGGTCCTTGAAACAACAATGATATA 59.332 33.333 0.00 0.00 27.59 0.86
662 665 4.468095 ACAAGTGTTGTTCGCTTATGAC 57.532 40.909 0.00 0.00 43.90 3.06
663 666 3.874543 ACAAGTGTTGTTCGCTTATGACA 59.125 39.130 0.00 0.00 43.90 3.58
664 667 4.024893 ACAAGTGTTGTTCGCTTATGACAG 60.025 41.667 0.00 0.00 43.90 3.51
665 668 3.067106 AGTGTTGTTCGCTTATGACAGG 58.933 45.455 0.00 0.00 32.41 4.00
666 669 2.159627 GTGTTGTTCGCTTATGACAGGG 59.840 50.000 0.00 0.00 0.00 4.45
667 670 1.130561 GTTGTTCGCTTATGACAGGGC 59.869 52.381 0.00 0.00 0.00 5.19
668 671 0.392461 TGTTCGCTTATGACAGGGCC 60.392 55.000 0.00 0.00 0.00 5.80
669 672 0.107654 GTTCGCTTATGACAGGGCCT 60.108 55.000 0.00 0.00 0.00 5.19
670 673 0.107703 TTCGCTTATGACAGGGCCTG 60.108 55.000 31.62 31.62 37.52 4.85
672 675 1.091771 CGCTTATGACAGGGCCTGTG 61.092 60.000 42.11 27.42 45.44 3.66
673 676 1.379642 GCTTATGACAGGGCCTGTGC 61.380 60.000 42.11 32.34 45.44 4.57
674 677 0.254178 CTTATGACAGGGCCTGTGCT 59.746 55.000 42.11 28.84 45.44 4.40
675 678 0.698238 TTATGACAGGGCCTGTGCTT 59.302 50.000 42.11 28.50 45.44 3.91
676 679 0.253044 TATGACAGGGCCTGTGCTTC 59.747 55.000 42.11 27.27 45.44 3.86
677 680 1.495579 ATGACAGGGCCTGTGCTTCT 61.496 55.000 42.11 18.33 45.44 2.85
678 681 1.673665 GACAGGGCCTGTGCTTCTG 60.674 63.158 42.11 13.99 45.44 3.02
679 682 3.060615 CAGGGCCTGTGCTTCTGC 61.061 66.667 25.74 0.00 37.74 4.26
680 683 4.357279 AGGGCCTGTGCTTCTGCC 62.357 66.667 4.50 0.00 43.26 4.85
681 684 4.666253 GGGCCTGTGCTTCTGCCA 62.666 66.667 0.84 0.00 45.83 4.92
682 685 3.060615 GGCCTGTGCTTCTGCCAG 61.061 66.667 0.00 0.00 43.46 4.85
683 686 2.282040 GCCTGTGCTTCTGCCAGT 60.282 61.111 0.00 0.00 36.45 4.00
684 687 2.623915 GCCTGTGCTTCTGCCAGTG 61.624 63.158 0.00 0.00 36.45 3.66
685 688 1.228063 CCTGTGCTTCTGCCAGTGT 60.228 57.895 0.00 0.00 36.45 3.55
686 689 1.233285 CCTGTGCTTCTGCCAGTGTC 61.233 60.000 0.00 0.00 36.45 3.67
687 690 0.533531 CTGTGCTTCTGCCAGTGTCA 60.534 55.000 0.00 0.00 38.71 3.58
688 691 0.107263 TGTGCTTCTGCCAGTGTCAA 60.107 50.000 0.00 0.00 38.71 3.18
689 692 0.308993 GTGCTTCTGCCAGTGTCAAC 59.691 55.000 0.00 0.00 38.71 3.18
690 693 0.181114 TGCTTCTGCCAGTGTCAACT 59.819 50.000 0.00 0.00 38.71 3.16
691 694 1.416030 TGCTTCTGCCAGTGTCAACTA 59.584 47.619 0.00 0.00 38.71 2.24
692 695 1.801178 GCTTCTGCCAGTGTCAACTAC 59.199 52.381 0.00 0.00 33.79 2.73
693 696 2.548920 GCTTCTGCCAGTGTCAACTACT 60.549 50.000 0.00 0.00 33.79 2.57
694 697 3.321497 CTTCTGCCAGTGTCAACTACTC 58.679 50.000 0.00 0.00 33.79 2.59
695 698 1.618837 TCTGCCAGTGTCAACTACTCC 59.381 52.381 0.00 0.00 33.79 3.85
696 699 0.685097 TGCCAGTGTCAACTACTCCC 59.315 55.000 0.00 0.00 33.79 4.30
697 700 0.977395 GCCAGTGTCAACTACTCCCT 59.023 55.000 0.00 0.00 33.79 4.20
706 709 5.010820 GTGTCAACTACTCCCTCAGTAACTT 59.989 44.000 0.00 0.00 37.13 2.66
708 711 5.927115 GTCAACTACTCCCTCAGTAACTTTG 59.073 44.000 0.00 0.00 37.13 2.77
709 712 5.836898 TCAACTACTCCCTCAGTAACTTTGA 59.163 40.000 0.00 0.00 37.13 2.69
722 725 9.166173 CTCAGTAACTTTGATCACATGGAATAA 57.834 33.333 0.00 0.00 0.00 1.40
748 751 8.502105 AAAACTCTTCTACCTCGAAAAGAAAA 57.498 30.769 5.57 0.00 0.00 2.29
801 813 2.093106 GTCCAGTGTATCGTCAGTCCT 58.907 52.381 0.00 0.00 0.00 3.85
910 922 1.428620 GACTCTACTCCGTCGCCAC 59.571 63.158 0.00 0.00 0.00 5.01
921 933 0.788391 CGTCGCCACAAAAGGAGTAC 59.212 55.000 0.00 0.00 0.00 2.73
926 938 1.439679 CCACAAAAGGAGTACGAGCC 58.560 55.000 0.00 0.00 0.00 4.70
963 993 0.472471 TGTGCCGTCTCCTTTCCTTT 59.528 50.000 0.00 0.00 0.00 3.11
993 1023 4.787280 CCCCCGGTCTCAGCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
994 1024 3.151022 CCCCGGTCTCAGCCTCTC 61.151 72.222 0.00 0.00 0.00 3.20
995 1025 2.363018 CCCGGTCTCAGCCTCTCA 60.363 66.667 0.00 0.00 0.00 3.27
996 1026 2.422231 CCCGGTCTCAGCCTCTCAG 61.422 68.421 0.00 0.00 0.00 3.35
1035 1065 0.971447 AGACCTTCGTGCTCTACCCC 60.971 60.000 0.00 0.00 0.00 4.95
1445 1475 1.597663 CGTCTTTCTCAACTTGCCGTT 59.402 47.619 0.00 0.00 35.88 4.44
1713 1744 1.437772 CGACGCCGAGGATCTACTGT 61.438 60.000 0.00 0.00 38.22 3.55
1732 1763 0.621082 TATCGGGCCATTGGTCAACA 59.379 50.000 9.97 0.00 0.00 3.33
2013 2071 3.738481 GGCAGGGGCATGGTGGTA 61.738 66.667 0.00 0.00 43.71 3.25
2091 2149 2.358737 CACTGCGGGTGGAACTCC 60.359 66.667 0.00 0.00 41.90 3.85
2167 2225 1.732917 CAGGCGCAAAACAAGGTGA 59.267 52.632 10.83 0.00 0.00 4.02
2244 2302 0.537188 TGAAGGCGGAGGAGATTGAC 59.463 55.000 0.00 0.00 0.00 3.18
2390 2448 5.101628 CGAGTTCTTGAGAGATTTGGAGAG 58.898 45.833 0.00 0.00 0.00 3.20
2406 2464 0.392729 AGAGCAGCAGCATGGAGAAC 60.393 55.000 3.17 0.00 45.49 3.01
2408 2466 1.742880 GCAGCAGCATGGAGAACGA 60.743 57.895 0.00 0.00 41.58 3.85
2448 2519 4.155462 CAGATGAACTGTGAAAGGATGGTG 59.845 45.833 0.00 0.00 41.30 4.17
2472 2546 6.204688 TGGTGACAACTTACACAATTCAGATC 59.795 38.462 0.00 0.00 38.57 2.75
2555 2629 7.878477 ATTGTACTGTCTTTGCATTTGAATG 57.122 32.000 0.00 0.00 39.40 2.67
2568 2643 7.881643 TGCATTTGAATGTTTTACATGTACC 57.118 32.000 4.68 0.00 37.97 3.34
2582 2657 4.662278 ACATGTACCCACAATTACAGCTT 58.338 39.130 0.00 0.00 38.42 3.74
2592 2667 7.015195 ACCCACAATTACAGCTTGAATTACTTT 59.985 33.333 2.93 0.00 0.00 2.66
2593 2668 7.329226 CCCACAATTACAGCTTGAATTACTTTG 59.671 37.037 2.93 0.00 0.00 2.77
2602 2678 8.103305 ACAGCTTGAATTACTTTGGATCTTCTA 58.897 33.333 0.00 0.00 0.00 2.10
2603 2679 8.610896 CAGCTTGAATTACTTTGGATCTTCTAG 58.389 37.037 0.00 0.00 0.00 2.43
2620 2696 2.782925 TCTAGAGGCATTTGGGGCAATA 59.217 45.455 0.00 0.00 35.46 1.90
2633 2711 4.196193 TGGGGCAATACGTCTTTGATTAG 58.804 43.478 13.63 0.00 0.00 1.73
2634 2712 3.564225 GGGGCAATACGTCTTTGATTAGG 59.436 47.826 13.63 0.00 0.00 2.69
2641 2719 8.774586 GCAATACGTCTTTGATTAGGACAATAT 58.225 33.333 13.63 0.00 0.00 1.28
2667 2745 6.659361 ACATCATCAATAAGAGCATATCGC 57.341 37.500 0.00 0.00 42.91 4.58
2684 2768 2.240500 GCGGATTACCAGCAGCTCG 61.241 63.158 0.00 0.00 36.36 5.03
2702 2786 4.276183 AGCTCGTATGACTCGAATACACAT 59.724 41.667 6.56 0.00 36.89 3.21
2710 2794 9.988350 GTATGACTCGAATACACATCAATTTTT 57.012 29.630 1.67 0.00 31.94 1.94
2750 2848 8.197439 TCATTGCTCATATATTATACCGGTCAG 58.803 37.037 12.40 0.00 0.00 3.51
2778 2876 8.515473 TGAATAATCTCGACATTACATTACCG 57.485 34.615 0.00 0.00 0.00 4.02
2779 2877 8.354426 TGAATAATCTCGACATTACATTACCGA 58.646 33.333 0.00 0.00 0.00 4.69
2780 2878 9.188588 GAATAATCTCGACATTACATTACCGAA 57.811 33.333 0.00 0.00 0.00 4.30
2783 2884 6.198650 TCTCGACATTACATTACCGAAGAA 57.801 37.500 0.00 0.00 0.00 2.52
3086 3191 2.572191 TATCGGTTGCCTCTGTAACG 57.428 50.000 0.00 0.00 37.89 3.18
3087 3192 0.739813 ATCGGTTGCCTCTGTAACGC 60.740 55.000 0.00 0.00 37.89 4.84
3088 3193 1.666553 CGGTTGCCTCTGTAACGCA 60.667 57.895 0.00 0.00 37.89 5.24
3089 3194 1.019278 CGGTTGCCTCTGTAACGCAT 61.019 55.000 0.00 0.00 37.89 4.73
3090 3195 1.737696 CGGTTGCCTCTGTAACGCATA 60.738 52.381 0.00 0.00 37.89 3.14
3091 3196 2.561569 GGTTGCCTCTGTAACGCATAT 58.438 47.619 0.00 0.00 37.89 1.78
3092 3197 2.287915 GGTTGCCTCTGTAACGCATATG 59.712 50.000 0.00 0.00 37.89 1.78
3093 3198 2.238942 TGCCTCTGTAACGCATATGG 57.761 50.000 4.56 0.00 0.00 2.74
3094 3199 1.760029 TGCCTCTGTAACGCATATGGA 59.240 47.619 4.56 0.00 0.00 3.41
3095 3200 2.224042 TGCCTCTGTAACGCATATGGAG 60.224 50.000 4.56 0.67 0.00 3.86
3096 3201 2.408050 CCTCTGTAACGCATATGGAGC 58.592 52.381 4.56 0.00 0.00 4.70
3097 3202 2.224042 CCTCTGTAACGCATATGGAGCA 60.224 50.000 4.56 0.00 0.00 4.26
3098 3203 3.457234 CTCTGTAACGCATATGGAGCAA 58.543 45.455 4.56 0.00 0.00 3.91
3099 3204 3.194861 TCTGTAACGCATATGGAGCAAC 58.805 45.455 4.56 0.00 0.00 4.17
3100 3205 2.935849 CTGTAACGCATATGGAGCAACA 59.064 45.455 4.56 0.00 0.00 3.33
3101 3206 2.675844 TGTAACGCATATGGAGCAACAC 59.324 45.455 4.56 0.00 0.00 3.32
3102 3207 1.819928 AACGCATATGGAGCAACACA 58.180 45.000 4.56 0.00 0.00 3.72
3103 3208 1.086696 ACGCATATGGAGCAACACAC 58.913 50.000 4.56 0.00 0.00 3.82
3104 3209 1.339055 ACGCATATGGAGCAACACACT 60.339 47.619 4.56 0.00 0.00 3.55
3105 3210 1.739466 CGCATATGGAGCAACACACTT 59.261 47.619 4.56 0.00 0.00 3.16
3106 3211 2.162208 CGCATATGGAGCAACACACTTT 59.838 45.455 4.56 0.00 0.00 2.66
3107 3212 3.373748 CGCATATGGAGCAACACACTTTA 59.626 43.478 4.56 0.00 0.00 1.85
3108 3213 4.035558 CGCATATGGAGCAACACACTTTAT 59.964 41.667 4.56 0.00 0.00 1.40
3109 3214 5.236263 CGCATATGGAGCAACACACTTTATA 59.764 40.000 4.56 0.00 0.00 0.98
3110 3215 6.073058 CGCATATGGAGCAACACACTTTATAT 60.073 38.462 4.56 0.00 0.00 0.86
3111 3216 7.520453 CGCATATGGAGCAACACACTTTATATT 60.520 37.037 4.56 0.00 0.00 1.28
3112 3217 8.783093 GCATATGGAGCAACACACTTTATATTA 58.217 33.333 4.56 0.00 0.00 0.98
3114 3219 6.656314 TGGAGCAACACACTTTATATTACG 57.344 37.500 0.00 0.00 0.00 3.18
3115 3220 5.583061 TGGAGCAACACACTTTATATTACGG 59.417 40.000 0.00 0.00 0.00 4.02
3116 3221 5.479716 AGCAACACACTTTATATTACGGC 57.520 39.130 0.00 0.00 0.00 5.68
3117 3222 4.033587 AGCAACACACTTTATATTACGGCG 59.966 41.667 4.80 4.80 0.00 6.46
3118 3223 4.784079 GCAACACACTTTATATTACGGCGG 60.784 45.833 13.24 0.00 0.00 6.13
3119 3224 2.867975 ACACACTTTATATTACGGCGGC 59.132 45.455 13.24 0.00 0.00 6.53
3120 3225 3.128349 CACACTTTATATTACGGCGGCT 58.872 45.455 13.24 0.00 0.00 5.52
3121 3226 3.059868 CACACTTTATATTACGGCGGCTG 60.060 47.826 13.24 7.39 0.00 4.85
3122 3227 3.128349 CACTTTATATTACGGCGGCTGT 58.872 45.455 19.67 19.67 0.00 4.40
3123 3228 3.059868 CACTTTATATTACGGCGGCTGTG 60.060 47.826 24.15 7.36 0.00 3.66
3124 3229 1.504359 TTATATTACGGCGGCTGTGC 58.496 50.000 24.15 0.00 0.00 4.57
3125 3230 0.665068 TATATTACGGCGGCTGTGCG 60.665 55.000 24.15 9.72 35.06 5.34
3134 3239 3.947841 GGCTGTGCGCAAACACGA 61.948 61.111 14.00 0.00 43.74 4.35
3135 3240 2.024022 GCTGTGCGCAAACACGAA 59.976 55.556 14.00 0.00 43.74 3.85
3136 3241 2.005537 GCTGTGCGCAAACACGAAG 61.006 57.895 14.00 2.41 43.74 3.79
3137 3242 2.646799 GCTGTGCGCAAACACGAAGT 62.647 55.000 14.00 0.00 43.74 3.01
3138 3243 0.654472 CTGTGCGCAAACACGAAGTC 60.654 55.000 14.00 0.00 41.61 3.01
3139 3244 1.350319 GTGCGCAAACACGAAGTCA 59.650 52.632 14.00 0.00 41.61 3.41
3140 3245 0.041312 GTGCGCAAACACGAAGTCAT 60.041 50.000 14.00 0.00 41.61 3.06
3141 3246 0.660488 TGCGCAAACACGAAGTCATT 59.340 45.000 8.16 0.00 41.61 2.57
3142 3247 1.867865 TGCGCAAACACGAAGTCATTA 59.132 42.857 8.16 0.00 41.61 1.90
3143 3248 2.482336 TGCGCAAACACGAAGTCATTAT 59.518 40.909 8.16 0.00 41.61 1.28
3144 3249 3.680458 TGCGCAAACACGAAGTCATTATA 59.320 39.130 8.16 0.00 41.61 0.98
3145 3250 4.152580 TGCGCAAACACGAAGTCATTATAA 59.847 37.500 8.16 0.00 41.61 0.98
3146 3251 5.163804 TGCGCAAACACGAAGTCATTATAAT 60.164 36.000 8.16 0.00 41.61 1.28
3147 3252 5.169561 GCGCAAACACGAAGTCATTATAATG 59.830 40.000 17.82 17.82 41.61 1.90
3148 3253 5.169561 CGCAAACACGAAGTCATTATAATGC 59.830 40.000 18.89 14.07 41.61 3.56
3149 3254 5.169561 GCAAACACGAAGTCATTATAATGCG 59.830 40.000 18.89 17.62 41.61 4.73
3150 3255 4.452890 ACACGAAGTCATTATAATGCGC 57.547 40.909 18.89 13.97 41.61 6.09
3151 3256 3.247648 ACACGAAGTCATTATAATGCGCC 59.752 43.478 18.89 10.09 41.61 6.53
3152 3257 2.806244 ACGAAGTCATTATAATGCGCCC 59.194 45.455 18.89 7.98 29.74 6.13
3153 3258 3.067106 CGAAGTCATTATAATGCGCCCT 58.933 45.455 18.89 9.80 36.36 5.19
3154 3259 3.498397 CGAAGTCATTATAATGCGCCCTT 59.502 43.478 18.89 16.06 36.36 3.95
3155 3260 4.377431 CGAAGTCATTATAATGCGCCCTTC 60.377 45.833 18.89 20.66 36.36 3.46
3156 3261 4.085357 AGTCATTATAATGCGCCCTTCA 57.915 40.909 18.89 0.00 36.36 3.02
3157 3262 4.655963 AGTCATTATAATGCGCCCTTCAT 58.344 39.130 18.89 0.00 36.36 2.57
3158 3263 5.804639 AGTCATTATAATGCGCCCTTCATA 58.195 37.500 18.89 0.00 36.36 2.15
3159 3264 6.418101 AGTCATTATAATGCGCCCTTCATAT 58.582 36.000 18.89 0.00 36.36 1.78
3160 3265 6.886459 AGTCATTATAATGCGCCCTTCATATT 59.114 34.615 18.89 0.00 36.36 1.28
3161 3266 7.394359 AGTCATTATAATGCGCCCTTCATATTT 59.606 33.333 18.89 0.00 36.36 1.40
3162 3267 7.698130 GTCATTATAATGCGCCCTTCATATTTC 59.302 37.037 18.89 0.00 36.36 2.17
3163 3268 6.509418 TTATAATGCGCCCTTCATATTTCC 57.491 37.500 4.18 0.00 0.00 3.13
3164 3269 2.664402 ATGCGCCCTTCATATTTCCT 57.336 45.000 4.18 0.00 0.00 3.36
3165 3270 1.679139 TGCGCCCTTCATATTTCCTG 58.321 50.000 4.18 0.00 0.00 3.86
3166 3271 0.954452 GCGCCCTTCATATTTCCTGG 59.046 55.000 0.00 0.00 0.00 4.45
3167 3272 1.476833 GCGCCCTTCATATTTCCTGGA 60.477 52.381 0.00 0.00 0.00 3.86
3168 3273 2.222027 CGCCCTTCATATTTCCTGGAC 58.778 52.381 0.00 0.00 0.00 4.02
3169 3274 2.421388 CGCCCTTCATATTTCCTGGACA 60.421 50.000 0.00 0.00 0.00 4.02
3170 3275 2.952310 GCCCTTCATATTTCCTGGACAC 59.048 50.000 0.00 0.00 0.00 3.67
3171 3276 3.624707 GCCCTTCATATTTCCTGGACACA 60.625 47.826 0.00 0.00 0.00 3.72
3172 3277 3.947834 CCCTTCATATTTCCTGGACACAC 59.052 47.826 0.00 0.00 0.00 3.82
3173 3278 4.324563 CCCTTCATATTTCCTGGACACACT 60.325 45.833 0.00 0.00 0.00 3.55
3174 3279 5.256474 CCTTCATATTTCCTGGACACACTT 58.744 41.667 0.00 0.00 0.00 3.16
3175 3280 5.124457 CCTTCATATTTCCTGGACACACTTG 59.876 44.000 0.00 0.00 0.00 3.16
3176 3281 5.241403 TCATATTTCCTGGACACACTTGT 57.759 39.130 0.00 0.00 39.32 3.16
3177 3282 5.630121 TCATATTTCCTGGACACACTTGTT 58.370 37.500 0.00 0.00 35.47 2.83
3178 3283 5.473162 TCATATTTCCTGGACACACTTGTTG 59.527 40.000 0.00 0.00 35.47 3.33
3179 3284 2.799126 TTCCTGGACACACTTGTTGT 57.201 45.000 0.00 0.00 39.97 3.32
3180 3285 2.799126 TCCTGGACACACTTGTTGTT 57.201 45.000 0.00 0.00 35.67 2.83
3181 3286 2.364632 TCCTGGACACACTTGTTGTTG 58.635 47.619 0.00 0.00 35.67 3.33
3182 3287 1.405105 CCTGGACACACTTGTTGTTGG 59.595 52.381 0.00 0.00 35.67 3.77
3183 3288 1.405105 CTGGACACACTTGTTGTTGGG 59.595 52.381 0.00 0.00 35.67 4.12
3184 3289 1.272203 TGGACACACTTGTTGTTGGGT 60.272 47.619 0.00 0.00 35.67 4.51
3185 3290 1.404035 GGACACACTTGTTGTTGGGTC 59.596 52.381 0.00 0.00 35.67 4.46
3186 3291 2.088423 GACACACTTGTTGTTGGGTCA 58.912 47.619 0.00 0.00 35.67 4.02
3187 3292 2.687935 GACACACTTGTTGTTGGGTCAT 59.312 45.455 0.00 0.00 35.67 3.06
3188 3293 3.880490 GACACACTTGTTGTTGGGTCATA 59.120 43.478 0.00 0.00 35.67 2.15
3189 3294 4.274147 ACACACTTGTTGTTGGGTCATAA 58.726 39.130 0.00 0.00 35.67 1.90
3190 3295 4.097286 ACACACTTGTTGTTGGGTCATAAC 59.903 41.667 0.00 0.00 35.67 1.89
3191 3296 4.097135 CACACTTGTTGTTGGGTCATAACA 59.903 41.667 0.00 0.00 35.67 2.41
3192 3297 4.892934 ACACTTGTTGTTGGGTCATAACAT 59.107 37.500 0.00 0.00 37.81 2.71
3193 3298 6.016693 CACACTTGTTGTTGGGTCATAACATA 60.017 38.462 0.00 0.00 37.81 2.29
3194 3299 6.719370 ACACTTGTTGTTGGGTCATAACATAT 59.281 34.615 0.00 0.00 37.81 1.78
3195 3300 7.232534 ACACTTGTTGTTGGGTCATAACATATT 59.767 33.333 0.00 0.00 37.81 1.28
3196 3301 7.541783 CACTTGTTGTTGGGTCATAACATATTG 59.458 37.037 0.00 0.00 37.81 1.90
3197 3302 6.522625 TGTTGTTGGGTCATAACATATTGG 57.477 37.500 0.00 0.00 37.81 3.16
3198 3303 6.013379 TGTTGTTGGGTCATAACATATTGGT 58.987 36.000 0.00 0.00 37.81 3.67
3199 3304 6.495181 TGTTGTTGGGTCATAACATATTGGTT 59.505 34.615 0.00 0.00 37.81 3.67
3200 3305 6.522625 TGTTGGGTCATAACATATTGGTTG 57.477 37.500 0.00 0.00 33.43 3.77
3201 3306 6.013379 TGTTGGGTCATAACATATTGGTTGT 58.987 36.000 0.00 0.00 33.43 3.32
3202 3307 6.495181 TGTTGGGTCATAACATATTGGTTGTT 59.505 34.615 0.00 0.00 40.30 2.83
3203 3308 6.767524 TGGGTCATAACATATTGGTTGTTC 57.232 37.500 0.00 0.00 38.26 3.18
3204 3309 5.654650 TGGGTCATAACATATTGGTTGTTCC 59.345 40.000 0.00 0.00 38.26 3.62
3205 3310 5.068591 GGGTCATAACATATTGGTTGTTCCC 59.931 44.000 0.00 0.00 38.26 3.97
3206 3311 5.068591 GGTCATAACATATTGGTTGTTCCCC 59.931 44.000 0.00 0.00 38.26 4.81
3207 3312 5.654650 GTCATAACATATTGGTTGTTCCCCA 59.345 40.000 0.00 0.00 38.26 4.96
3208 3313 6.153680 GTCATAACATATTGGTTGTTCCCCAA 59.846 38.462 0.00 0.00 45.55 4.12
3215 3320 3.835478 TGGTTGTTCCCCAATAATCCA 57.165 42.857 0.00 0.00 35.02 3.41
3216 3321 4.133526 TGGTTGTTCCCCAATAATCCAA 57.866 40.909 0.00 0.00 35.02 3.53
3217 3322 4.493618 TGGTTGTTCCCCAATAATCCAAA 58.506 39.130 0.00 0.00 35.02 3.28
3218 3323 4.907875 TGGTTGTTCCCCAATAATCCAAAA 59.092 37.500 0.00 0.00 35.02 2.44
3219 3324 5.549619 TGGTTGTTCCCCAATAATCCAAAAT 59.450 36.000 0.00 0.00 35.02 1.82
3220 3325 6.044871 TGGTTGTTCCCCAATAATCCAAAATT 59.955 34.615 0.00 0.00 35.02 1.82
3221 3326 6.945435 GGTTGTTCCCCAATAATCCAAAATTT 59.055 34.615 0.00 0.00 35.02 1.82
3222 3327 8.103935 GGTTGTTCCCCAATAATCCAAAATTTA 58.896 33.333 0.00 0.00 35.02 1.40
3223 3328 9.508642 GTTGTTCCCCAATAATCCAAAATTTAA 57.491 29.630 0.00 0.00 35.02 1.52
3225 3330 9.508642 TGTTCCCCAATAATCCAAAATTTAAAC 57.491 29.630 0.00 0.00 0.00 2.01
3226 3331 8.952278 GTTCCCCAATAATCCAAAATTTAAACC 58.048 33.333 0.00 0.00 0.00 3.27
3227 3332 8.219660 TCCCCAATAATCCAAAATTTAAACCA 57.780 30.769 0.00 0.00 0.00 3.67
3228 3333 8.103935 TCCCCAATAATCCAAAATTTAAACCAC 58.896 33.333 0.00 0.00 0.00 4.16
3229 3334 7.885399 CCCCAATAATCCAAAATTTAAACCACA 59.115 33.333 0.00 0.00 0.00 4.17
3230 3335 9.460019 CCCAATAATCCAAAATTTAAACCACAT 57.540 29.630 0.00 0.00 0.00 3.21
3238 3343 9.618890 TCCAAAATTTAAACCACATTTGATTCA 57.381 25.926 0.00 0.00 31.23 2.57
3243 3348 8.970859 ATTTAAACCACATTTGATTCAAACCA 57.029 26.923 13.80 0.00 36.13 3.67
3244 3349 8.792830 TTTAAACCACATTTGATTCAAACCAA 57.207 26.923 13.80 0.00 36.13 3.67
3245 3350 8.970859 TTAAACCACATTTGATTCAAACCAAT 57.029 26.923 13.80 0.00 36.13 3.16
3246 3351 7.878547 AAACCACATTTGATTCAAACCAATT 57.121 28.000 13.80 3.48 36.13 2.32
3247 3352 7.878547 AACCACATTTGATTCAAACCAATTT 57.121 28.000 13.80 3.30 36.13 1.82
3248 3353 7.495135 ACCACATTTGATTCAAACCAATTTC 57.505 32.000 13.80 0.00 36.13 2.17
3249 3354 7.052873 ACCACATTTGATTCAAACCAATTTCA 58.947 30.769 13.80 0.00 36.13 2.69
3250 3355 7.720515 ACCACATTTGATTCAAACCAATTTCAT 59.279 29.630 13.80 0.00 36.13 2.57
3251 3356 8.569641 CCACATTTGATTCAAACCAATTTCATT 58.430 29.630 13.80 0.00 36.13 2.57
3252 3357 9.601971 CACATTTGATTCAAACCAATTTCATTC 57.398 29.630 13.80 0.00 36.13 2.67
3253 3358 8.785946 ACATTTGATTCAAACCAATTTCATTCC 58.214 29.630 13.80 0.00 36.13 3.01
3254 3359 9.005777 CATTTGATTCAAACCAATTTCATTCCT 57.994 29.630 13.80 0.00 36.13 3.36
3267 3372 9.248291 CCAATTTCATTCCTAATAATTTGGACG 57.752 33.333 0.00 0.00 35.70 4.79
3285 3390 9.661563 ATTTGGACGAATAATTAGTTGTAGTGA 57.338 29.630 5.80 0.00 0.00 3.41
3286 3391 8.697846 TTGGACGAATAATTAGTTGTAGTGAG 57.302 34.615 5.80 0.00 0.00 3.51
3287 3392 8.058667 TGGACGAATAATTAGTTGTAGTGAGA 57.941 34.615 5.80 0.00 0.00 3.27
3288 3393 7.972277 TGGACGAATAATTAGTTGTAGTGAGAC 59.028 37.037 5.80 0.00 0.00 3.36
3289 3394 8.189460 GGACGAATAATTAGTTGTAGTGAGACT 58.811 37.037 5.80 0.00 0.00 3.24
3290 3395 9.570488 GACGAATAATTAGTTGTAGTGAGACTT 57.430 33.333 5.80 0.00 0.00 3.01
3301 3406 9.244292 AGTTGTAGTGAGACTTACATTGATAGA 57.756 33.333 0.00 0.00 0.00 1.98
3302 3407 9.856488 GTTGTAGTGAGACTTACATTGATAGAA 57.144 33.333 0.00 0.00 0.00 2.10
3303 3408 9.856488 TTGTAGTGAGACTTACATTGATAGAAC 57.144 33.333 0.00 0.00 0.00 3.01
3304 3409 9.020731 TGTAGTGAGACTTACATTGATAGAACA 57.979 33.333 0.00 0.00 0.00 3.18
3305 3410 9.856488 GTAGTGAGACTTACATTGATAGAACAA 57.144 33.333 0.00 0.00 0.00 2.83
3306 3411 8.764524 AGTGAGACTTACATTGATAGAACAAC 57.235 34.615 0.00 0.00 32.50 3.32
3307 3412 8.589338 AGTGAGACTTACATTGATAGAACAACT 58.411 33.333 0.00 0.00 32.50 3.16
3308 3413 9.856488 GTGAGACTTACATTGATAGAACAACTA 57.144 33.333 0.00 0.00 35.42 2.24
3337 3442 8.678593 ATTAGTTAAACTATAAGCCAAGAGGC 57.321 34.615 0.00 0.00 45.15 4.70
3353 3458 6.342111 CCAAGAGGCTAACTAGTCTAAAAGG 58.658 44.000 0.00 0.00 38.61 3.11
3354 3459 6.070710 CCAAGAGGCTAACTAGTCTAAAAGGT 60.071 42.308 0.00 0.00 38.61 3.50
3355 3460 7.123847 CCAAGAGGCTAACTAGTCTAAAAGGTA 59.876 40.741 0.00 0.00 38.61 3.08
3356 3461 7.885009 AGAGGCTAACTAGTCTAAAAGGTAG 57.115 40.000 0.00 0.00 38.61 3.18
3357 3462 6.834969 AGAGGCTAACTAGTCTAAAAGGTAGG 59.165 42.308 0.00 0.00 38.61 3.18
3358 3463 5.599732 GGCTAACTAGTCTAAAAGGTAGGC 58.400 45.833 0.00 5.38 46.99 3.93
3359 3464 6.218108 GCTAACTAGTCTAAAAGGTAGGCA 57.782 41.667 0.00 0.00 34.24 4.75
3360 3465 6.818233 GCTAACTAGTCTAAAAGGTAGGCAT 58.182 40.000 0.00 0.00 34.24 4.40
3361 3466 6.702282 GCTAACTAGTCTAAAAGGTAGGCATG 59.298 42.308 0.00 0.00 34.24 4.06
3362 3467 5.024785 ACTAGTCTAAAAGGTAGGCATGC 57.975 43.478 9.90 9.90 0.00 4.06
3363 3468 4.469945 ACTAGTCTAAAAGGTAGGCATGCA 59.530 41.667 21.36 0.00 0.00 3.96
3364 3469 4.301072 AGTCTAAAAGGTAGGCATGCAA 57.699 40.909 21.36 3.60 0.00 4.08
3365 3470 4.010349 AGTCTAAAAGGTAGGCATGCAAC 58.990 43.478 21.36 16.41 0.00 4.17
3366 3471 4.010349 GTCTAAAAGGTAGGCATGCAACT 58.990 43.478 21.36 10.94 0.00 3.16
3367 3472 4.009675 TCTAAAAGGTAGGCATGCAACTG 58.990 43.478 21.36 0.00 0.00 3.16
3368 3473 1.549203 AAAGGTAGGCATGCAACTGG 58.451 50.000 21.36 0.00 0.00 4.00
3369 3474 0.967380 AAGGTAGGCATGCAACTGGC 60.967 55.000 21.36 5.76 45.13 4.85
3373 3478 2.047939 GGCATGCAACTGGCCAAC 60.048 61.111 21.36 0.00 46.92 3.77
3374 3479 2.735883 GCATGCAACTGGCCAACA 59.264 55.556 14.21 3.05 43.89 3.33
3375 3480 1.294138 GCATGCAACTGGCCAACAT 59.706 52.632 14.21 5.61 43.89 2.71
3376 3481 0.531657 GCATGCAACTGGCCAACATA 59.468 50.000 14.21 0.00 43.89 2.29
3377 3482 1.067000 GCATGCAACTGGCCAACATAA 60.067 47.619 14.21 0.00 43.89 1.90
3378 3483 2.612471 GCATGCAACTGGCCAACATAAA 60.612 45.455 14.21 0.00 43.89 1.40
3379 3484 3.661944 CATGCAACTGGCCAACATAAAA 58.338 40.909 7.01 0.00 43.89 1.52
3380 3485 3.827008 TGCAACTGGCCAACATAAAAA 57.173 38.095 7.01 0.00 43.89 1.94
3399 3504 2.588286 ACCCTACCGGTCTAGTTGC 58.412 57.895 12.40 0.00 43.58 4.17
3400 3505 0.251922 ACCCTACCGGTCTAGTTGCA 60.252 55.000 12.40 0.00 43.58 4.08
3401 3506 0.460311 CCCTACCGGTCTAGTTGCAG 59.540 60.000 12.40 0.00 0.00 4.41
3402 3507 1.183549 CCTACCGGTCTAGTTGCAGT 58.816 55.000 12.40 0.00 0.00 4.40
3403 3508 1.134560 CCTACCGGTCTAGTTGCAGTC 59.865 57.143 12.40 0.00 0.00 3.51
3404 3509 1.816835 CTACCGGTCTAGTTGCAGTCA 59.183 52.381 12.40 0.00 0.00 3.41
3405 3510 1.267121 ACCGGTCTAGTTGCAGTCAT 58.733 50.000 0.00 0.00 0.00 3.06
3406 3511 1.204941 ACCGGTCTAGTTGCAGTCATC 59.795 52.381 0.00 0.00 0.00 2.92
3407 3512 1.204704 CCGGTCTAGTTGCAGTCATCA 59.795 52.381 0.00 0.00 0.00 3.07
3408 3513 2.159043 CCGGTCTAGTTGCAGTCATCAT 60.159 50.000 0.00 0.00 0.00 2.45
3409 3514 2.862536 CGGTCTAGTTGCAGTCATCATG 59.137 50.000 0.00 0.00 0.00 3.07
3410 3515 3.201290 GGTCTAGTTGCAGTCATCATGG 58.799 50.000 0.00 0.00 0.00 3.66
3411 3516 3.369892 GGTCTAGTTGCAGTCATCATGGT 60.370 47.826 0.00 0.00 0.00 3.55
3412 3517 3.620374 GTCTAGTTGCAGTCATCATGGTG 59.380 47.826 0.00 0.00 0.00 4.17
3413 3518 1.171308 AGTTGCAGTCATCATGGTGC 58.829 50.000 0.00 6.06 36.42 5.01
3414 3519 0.171903 GTTGCAGTCATCATGGTGCC 59.828 55.000 0.00 0.00 34.91 5.01
3415 3520 0.966875 TTGCAGTCATCATGGTGCCC 60.967 55.000 0.00 0.00 34.91 5.36
3416 3521 2.475466 GCAGTCATCATGGTGCCCG 61.475 63.158 0.00 0.00 0.00 6.13
3417 3522 1.078214 CAGTCATCATGGTGCCCGT 60.078 57.895 0.00 0.00 0.00 5.28
3418 3523 1.078214 AGTCATCATGGTGCCCGTG 60.078 57.895 0.00 7.01 41.56 4.94
3419 3524 1.377202 GTCATCATGGTGCCCGTGT 60.377 57.895 0.00 0.19 41.03 4.49
3420 3525 1.377072 TCATCATGGTGCCCGTGTG 60.377 57.895 0.00 9.84 41.03 3.82
3421 3526 2.751436 ATCATGGTGCCCGTGTGC 60.751 61.111 11.71 0.00 41.03 4.57
3422 3527 3.565961 ATCATGGTGCCCGTGTGCA 62.566 57.895 11.71 0.00 41.03 4.57
3423 3528 2.842188 ATCATGGTGCCCGTGTGCAT 62.842 55.000 11.71 0.00 44.30 3.96
3424 3529 2.283101 ATGGTGCCCGTGTGCATT 60.283 55.556 0.00 0.00 44.30 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 8.055790 TCTGACTCTTCTCCTTATGTCTATTCA 58.944 37.037 0.00 0.00 0.00 2.57
174 177 9.444600 GTCCACAAGATAAAACTTATTAGGTGA 57.555 33.333 0.00 0.00 0.00 4.02
303 306 7.458397 AGTGAAGAATGGGTGAAATTGTACTA 58.542 34.615 0.00 0.00 0.00 1.82
305 308 6.575162 AGTGAAGAATGGGTGAAATTGTAC 57.425 37.500 0.00 0.00 0.00 2.90
341 344 3.454447 TCAAGACTCCAAAACACCTCTCA 59.546 43.478 0.00 0.00 0.00 3.27
374 377 5.598417 ACTAGGCAAGTGAAACAAAATCCTT 59.402 36.000 0.00 0.00 41.43 3.36
474 477 7.552459 TCACACTTGTTGAATTCTATATCGGA 58.448 34.615 7.05 0.00 0.00 4.55
566 569 2.543641 TGATTCATAGCAGCACTGTCG 58.456 47.619 0.00 0.00 0.00 4.35
661 664 2.433446 CAGAAGCACAGGCCCTGT 59.567 61.111 11.57 11.57 46.51 4.00
662 665 3.060615 GCAGAAGCACAGGCCCTG 61.061 66.667 9.83 9.83 42.56 4.45
663 666 4.357279 GGCAGAAGCACAGGCCCT 62.357 66.667 0.00 0.00 44.61 5.19
664 667 4.666253 TGGCAGAAGCACAGGCCC 62.666 66.667 0.00 0.00 45.83 5.80
665 668 3.060615 CTGGCAGAAGCACAGGCC 61.061 66.667 9.42 0.00 46.58 5.19
666 669 2.282040 ACTGGCAGAAGCACAGGC 60.282 61.111 23.66 0.00 44.61 4.85
667 670 1.228063 ACACTGGCAGAAGCACAGG 60.228 57.895 23.66 2.45 44.61 4.00
668 671 0.533531 TGACACTGGCAGAAGCACAG 60.534 55.000 23.66 4.21 44.61 3.66
669 672 0.107263 TTGACACTGGCAGAAGCACA 60.107 50.000 23.66 13.32 44.61 4.57
670 673 0.308993 GTTGACACTGGCAGAAGCAC 59.691 55.000 23.66 11.09 44.61 4.40
671 674 0.181114 AGTTGACACTGGCAGAAGCA 59.819 50.000 23.66 12.33 44.61 3.91
672 675 1.801178 GTAGTTGACACTGGCAGAAGC 59.199 52.381 23.66 9.75 35.61 3.86
673 676 3.321497 GAGTAGTTGACACTGGCAGAAG 58.679 50.000 23.66 15.41 34.06 2.85
674 677 2.037251 GGAGTAGTTGACACTGGCAGAA 59.963 50.000 23.66 1.17 34.06 3.02
675 678 1.618837 GGAGTAGTTGACACTGGCAGA 59.381 52.381 23.66 0.00 34.06 4.26
676 679 1.338200 GGGAGTAGTTGACACTGGCAG 60.338 57.143 14.16 14.16 34.06 4.85
677 680 0.685097 GGGAGTAGTTGACACTGGCA 59.315 55.000 0.00 0.00 34.06 4.92
678 681 0.977395 AGGGAGTAGTTGACACTGGC 59.023 55.000 0.00 0.00 34.06 4.85
679 682 2.232452 CTGAGGGAGTAGTTGACACTGG 59.768 54.545 0.00 0.00 34.06 4.00
680 683 2.894126 ACTGAGGGAGTAGTTGACACTG 59.106 50.000 0.00 0.00 34.06 3.66
681 684 3.246416 ACTGAGGGAGTAGTTGACACT 57.754 47.619 0.00 0.00 36.99 3.55
682 685 4.523558 AGTTACTGAGGGAGTAGTTGACAC 59.476 45.833 0.00 0.00 38.45 3.67
683 686 4.737578 AGTTACTGAGGGAGTAGTTGACA 58.262 43.478 0.00 0.00 38.45 3.58
684 687 5.725325 AAGTTACTGAGGGAGTAGTTGAC 57.275 43.478 0.00 0.00 38.45 3.18
685 688 5.836898 TCAAAGTTACTGAGGGAGTAGTTGA 59.163 40.000 0.00 0.00 38.45 3.18
686 689 6.097915 TCAAAGTTACTGAGGGAGTAGTTG 57.902 41.667 0.00 0.00 38.45 3.16
687 690 6.497259 TGATCAAAGTTACTGAGGGAGTAGTT 59.503 38.462 0.00 0.00 38.45 2.24
688 691 6.017192 TGATCAAAGTTACTGAGGGAGTAGT 58.983 40.000 0.00 0.00 38.45 2.73
689 692 6.071334 TGTGATCAAAGTTACTGAGGGAGTAG 60.071 42.308 0.00 0.00 38.45 2.57
690 693 5.778241 TGTGATCAAAGTTACTGAGGGAGTA 59.222 40.000 0.00 0.00 35.96 2.59
691 694 4.593206 TGTGATCAAAGTTACTGAGGGAGT 59.407 41.667 0.00 0.00 38.88 3.85
692 695 5.152623 TGTGATCAAAGTTACTGAGGGAG 57.847 43.478 0.00 0.00 0.00 4.30
693 696 5.491070 CATGTGATCAAAGTTACTGAGGGA 58.509 41.667 0.00 0.00 0.00 4.20
694 697 4.637534 CCATGTGATCAAAGTTACTGAGGG 59.362 45.833 0.00 0.00 0.00 4.30
695 698 5.491070 TCCATGTGATCAAAGTTACTGAGG 58.509 41.667 0.00 0.00 0.00 3.86
696 699 7.621428 ATTCCATGTGATCAAAGTTACTGAG 57.379 36.000 0.00 0.00 0.00 3.35
697 700 9.513906 TTTATTCCATGTGATCAAAGTTACTGA 57.486 29.630 0.00 0.00 0.00 3.41
722 725 8.502105 TTTCTTTTCGAGGTAGAAGAGTTTTT 57.498 30.769 6.20 0.00 34.91 1.94
851 863 5.990668 ACTAAATTATCACCAGGTCAGGTC 58.009 41.667 0.00 0.00 40.77 3.85
852 864 5.487488 TGACTAAATTATCACCAGGTCAGGT 59.513 40.000 0.00 0.00 44.48 4.00
853 865 5.989477 TGACTAAATTATCACCAGGTCAGG 58.011 41.667 0.00 0.00 0.00 3.86
854 866 7.106239 ACTTGACTAAATTATCACCAGGTCAG 58.894 38.462 0.00 0.00 34.65 3.51
855 867 7.016153 ACTTGACTAAATTATCACCAGGTCA 57.984 36.000 0.00 0.00 0.00 4.02
910 922 1.079503 GCTGGCTCGTACTCCTTTTG 58.920 55.000 0.00 0.00 0.00 2.44
921 933 4.379243 ACTTCCGGTGCTGGCTCG 62.379 66.667 0.00 0.00 0.00 5.03
949 961 3.075148 GGAAAGGAAAGGAAAGGAGACG 58.925 50.000 0.00 0.00 0.00 4.18
953 965 2.158370 GGGTGGAAAGGAAAGGAAAGGA 60.158 50.000 0.00 0.00 0.00 3.36
954 966 2.248248 GGGTGGAAAGGAAAGGAAAGG 58.752 52.381 0.00 0.00 0.00 3.11
956 968 1.989706 CGGGTGGAAAGGAAAGGAAA 58.010 50.000 0.00 0.00 0.00 3.13
989 1019 2.192443 CTGCCATGGCCTGAGAGG 59.808 66.667 33.44 10.86 41.09 3.69
990 1020 2.516460 GCTGCCATGGCCTGAGAG 60.516 66.667 33.44 23.58 41.09 3.20
991 1021 4.478371 CGCTGCCATGGCCTGAGA 62.478 66.667 33.44 14.00 41.09 3.27
992 1022 4.790962 ACGCTGCCATGGCCTGAG 62.791 66.667 33.44 26.92 41.09 3.35
993 1023 4.783621 GACGCTGCCATGGCCTGA 62.784 66.667 33.44 14.81 41.09 3.86
1047 1077 3.492353 ATGGGGATGAGGTGGCCG 61.492 66.667 0.00 0.00 0.00 6.13
1431 1461 1.048601 AGAGGAACGGCAAGTTGAGA 58.951 50.000 7.16 0.00 44.35 3.27
1527 1558 1.301637 CACCGTGACCAGCATGTCA 60.302 57.895 4.39 4.39 42.75 3.58
1705 1736 2.303022 CCAATGGCCCGATACAGTAGAT 59.697 50.000 0.00 0.00 0.00 1.98
1713 1744 0.621082 TGTTGACCAATGGCCCGATA 59.379 50.000 0.00 0.00 0.00 2.92
1866 1903 3.212682 CTCTCTAGCCCGCGAGCA 61.213 66.667 16.96 0.00 34.23 4.26
2013 2071 1.898574 CTGCGGCACCCAGTTCTTT 60.899 57.895 0.00 0.00 0.00 2.52
2167 2225 3.662078 TCTTCATCTCCTCCACCATGAT 58.338 45.455 0.00 0.00 0.00 2.45
2208 2266 0.251297 TCACCGTCCCCTTCTCGTAA 60.251 55.000 0.00 0.00 0.00 3.18
2390 2448 1.300971 TTCGTTCTCCATGCTGCTGC 61.301 55.000 8.89 8.89 40.20 5.25
2406 2464 3.189080 TCTGTCAATTGTTGCATCCTTCG 59.811 43.478 5.13 0.00 0.00 3.79
2408 2466 4.768448 TCATCTGTCAATTGTTGCATCCTT 59.232 37.500 5.13 0.00 0.00 3.36
2438 2509 3.312736 AAGTTGTCACCACCATCCTTT 57.687 42.857 0.00 0.00 0.00 3.11
2448 2519 6.204688 TGATCTGAATTGTGTAAGTTGTCACC 59.795 38.462 9.44 0.00 34.14 4.02
2555 2629 6.804783 GCTGTAATTGTGGGTACATGTAAAAC 59.195 38.462 7.25 6.98 36.53 2.43
2568 2643 7.329226 CCAAAGTAATTCAAGCTGTAATTGTGG 59.671 37.037 13.98 11.84 0.00 4.17
2582 2657 7.092891 TGCCTCTAGAAGATCCAAAGTAATTCA 60.093 37.037 0.00 0.00 0.00 2.57
2592 2667 3.137176 CCCAAATGCCTCTAGAAGATCCA 59.863 47.826 0.00 0.00 0.00 3.41
2593 2668 3.497584 CCCCAAATGCCTCTAGAAGATCC 60.498 52.174 0.00 0.00 0.00 3.36
2602 2678 1.780503 GTATTGCCCCAAATGCCTCT 58.219 50.000 0.00 0.00 0.00 3.69
2603 2679 0.385390 CGTATTGCCCCAAATGCCTC 59.615 55.000 0.00 0.00 0.00 4.70
2620 2696 9.661563 TGTTAATATTGTCCTAATCAAAGACGT 57.338 29.630 0.00 0.00 33.09 4.34
2641 2719 8.659491 GCGATATGCTCTTATTGATGATGTTAA 58.341 33.333 0.00 0.00 41.73 2.01
2666 2744 2.240500 CGAGCTGCTGGTAATCCGC 61.241 63.158 7.01 0.00 36.30 5.54
2667 2745 0.384309 TACGAGCTGCTGGTAATCCG 59.616 55.000 20.07 11.84 36.30 4.18
2668 2746 2.035961 TCATACGAGCTGCTGGTAATCC 59.964 50.000 24.77 0.61 29.34 3.01
2684 2768 9.988350 AAAAATTGATGTGTATTCGAGTCATAC 57.012 29.630 0.00 0.00 0.00 2.39
2710 2794 5.221986 ATGAGCAATGAGCCCATAGATACAA 60.222 40.000 0.00 0.00 40.21 2.41
2722 2806 6.986817 ACCGGTATAATATATGAGCAATGAGC 59.013 38.462 4.49 0.00 46.19 4.26
2723 2807 8.197439 TGACCGGTATAATATATGAGCAATGAG 58.803 37.037 7.34 0.00 0.00 2.90
2724 2808 8.073467 TGACCGGTATAATATATGAGCAATGA 57.927 34.615 7.34 0.00 0.00 2.57
2727 2811 7.712204 TCTGACCGGTATAATATATGAGCAA 57.288 36.000 7.34 0.00 0.00 3.91
2728 2812 7.898014 ATCTGACCGGTATAATATATGAGCA 57.102 36.000 7.34 0.00 0.00 4.26
2761 2859 5.051641 GCTTCTTCGGTAATGTAATGTCGAG 60.052 44.000 0.00 0.00 0.00 4.04
2762 2860 4.802039 GCTTCTTCGGTAATGTAATGTCGA 59.198 41.667 0.00 0.00 0.00 4.20
2776 2874 4.024048 ACAAAGTAACACATGCTTCTTCGG 60.024 41.667 0.00 0.00 32.24 4.30
2778 2876 5.239525 AGGACAAAGTAACACATGCTTCTTC 59.760 40.000 0.00 0.00 32.24 2.87
2779 2877 5.133221 AGGACAAAGTAACACATGCTTCTT 58.867 37.500 0.00 0.00 32.24 2.52
2780 2878 4.718961 AGGACAAAGTAACACATGCTTCT 58.281 39.130 0.00 0.00 32.24 2.85
2783 2884 4.644685 ACAAAGGACAAAGTAACACATGCT 59.355 37.500 0.00 0.00 0.00 3.79
2840 2943 3.242867 TGAAATGGAGTCTGAGGTCACT 58.757 45.455 0.00 0.00 0.00 3.41
3066 3171 2.802057 GCGTTACAGAGGCAACCGATAT 60.802 50.000 0.00 0.00 38.95 1.63
3067 3172 1.470285 GCGTTACAGAGGCAACCGATA 60.470 52.381 0.00 0.00 38.95 2.92
3068 3173 0.739813 GCGTTACAGAGGCAACCGAT 60.740 55.000 0.00 0.00 38.95 4.18
3069 3174 1.373748 GCGTTACAGAGGCAACCGA 60.374 57.895 0.00 0.00 38.95 4.69
3070 3175 1.666553 TGCGTTACAGAGGCAACCG 60.667 57.895 0.00 0.00 45.36 4.44
3071 3176 4.371975 TGCGTTACAGAGGCAACC 57.628 55.556 0.00 0.00 45.36 3.77
3075 3180 2.408050 CTCCATATGCGTTACAGAGGC 58.592 52.381 0.00 0.00 39.55 4.70
3076 3181 2.224042 TGCTCCATATGCGTTACAGAGG 60.224 50.000 0.00 0.00 0.00 3.69
3077 3182 3.097877 TGCTCCATATGCGTTACAGAG 57.902 47.619 0.00 0.00 0.00 3.35
3078 3183 3.194861 GTTGCTCCATATGCGTTACAGA 58.805 45.455 0.00 0.00 0.00 3.41
3079 3184 2.935849 TGTTGCTCCATATGCGTTACAG 59.064 45.455 0.00 0.00 0.00 2.74
3080 3185 2.675844 GTGTTGCTCCATATGCGTTACA 59.324 45.455 0.00 0.00 0.00 2.41
3081 3186 2.675844 TGTGTTGCTCCATATGCGTTAC 59.324 45.455 0.00 0.00 0.00 2.50
3082 3187 2.675844 GTGTGTTGCTCCATATGCGTTA 59.324 45.455 0.00 0.00 0.00 3.18
3083 3188 1.468520 GTGTGTTGCTCCATATGCGTT 59.531 47.619 0.00 0.00 0.00 4.84
3084 3189 1.086696 GTGTGTTGCTCCATATGCGT 58.913 50.000 0.00 0.00 0.00 5.24
3085 3190 1.372582 AGTGTGTTGCTCCATATGCG 58.627 50.000 0.00 0.00 0.00 4.73
3086 3191 3.855689 AAAGTGTGTTGCTCCATATGC 57.144 42.857 0.00 0.00 0.00 3.14
3088 3193 8.988934 CGTAATATAAAGTGTGTTGCTCCATAT 58.011 33.333 0.00 0.00 0.00 1.78
3089 3194 7.439955 CCGTAATATAAAGTGTGTTGCTCCATA 59.560 37.037 0.00 0.00 0.00 2.74
3090 3195 6.260050 CCGTAATATAAAGTGTGTTGCTCCAT 59.740 38.462 0.00 0.00 0.00 3.41
3091 3196 5.583061 CCGTAATATAAAGTGTGTTGCTCCA 59.417 40.000 0.00 0.00 0.00 3.86
3092 3197 5.503520 GCCGTAATATAAAGTGTGTTGCTCC 60.504 44.000 0.00 0.00 0.00 4.70
3093 3198 5.499047 GCCGTAATATAAAGTGTGTTGCTC 58.501 41.667 0.00 0.00 0.00 4.26
3094 3199 4.033587 CGCCGTAATATAAAGTGTGTTGCT 59.966 41.667 0.00 0.00 0.00 3.91
3095 3200 4.268522 CGCCGTAATATAAAGTGTGTTGC 58.731 43.478 0.00 0.00 0.00 4.17
3096 3201 4.784079 GCCGCCGTAATATAAAGTGTGTTG 60.784 45.833 0.00 0.00 0.00 3.33
3097 3202 3.310501 GCCGCCGTAATATAAAGTGTGTT 59.689 43.478 0.00 0.00 0.00 3.32
3098 3203 2.867975 GCCGCCGTAATATAAAGTGTGT 59.132 45.455 0.00 0.00 0.00 3.72
3099 3204 3.059868 CAGCCGCCGTAATATAAAGTGTG 60.060 47.826 0.00 0.00 0.00 3.82
3100 3205 3.128349 CAGCCGCCGTAATATAAAGTGT 58.872 45.455 0.00 0.00 0.00 3.55
3101 3206 3.059868 CACAGCCGCCGTAATATAAAGTG 60.060 47.826 0.00 0.00 0.00 3.16
3102 3207 3.128349 CACAGCCGCCGTAATATAAAGT 58.872 45.455 0.00 0.00 0.00 2.66
3103 3208 2.096417 GCACAGCCGCCGTAATATAAAG 60.096 50.000 0.00 0.00 0.00 1.85
3104 3209 1.868498 GCACAGCCGCCGTAATATAAA 59.132 47.619 0.00 0.00 0.00 1.40
3105 3210 1.504359 GCACAGCCGCCGTAATATAA 58.496 50.000 0.00 0.00 0.00 0.98
3106 3211 0.665068 CGCACAGCCGCCGTAATATA 60.665 55.000 0.00 0.00 0.00 0.86
3107 3212 1.954146 CGCACAGCCGCCGTAATAT 60.954 57.895 0.00 0.00 0.00 1.28
3108 3213 2.583868 CGCACAGCCGCCGTAATA 60.584 61.111 0.00 0.00 0.00 0.98
3119 3224 0.654472 GACTTCGTGTTTGCGCACAG 60.654 55.000 11.12 0.00 39.19 3.66
3120 3225 1.350319 GACTTCGTGTTTGCGCACA 59.650 52.632 11.12 0.00 39.19 4.57
3121 3226 0.041312 ATGACTTCGTGTTTGCGCAC 60.041 50.000 11.12 0.00 36.12 5.34
3122 3227 0.660488 AATGACTTCGTGTTTGCGCA 59.340 45.000 5.66 5.66 0.00 6.09
3123 3228 2.587612 TAATGACTTCGTGTTTGCGC 57.412 45.000 0.00 0.00 0.00 6.09
3124 3229 5.169561 GCATTATAATGACTTCGTGTTTGCG 59.830 40.000 26.22 0.00 38.70 4.85
3125 3230 5.169561 CGCATTATAATGACTTCGTGTTTGC 59.830 40.000 26.22 8.83 38.70 3.68
3126 3231 5.169561 GCGCATTATAATGACTTCGTGTTTG 59.830 40.000 26.22 0.06 38.70 2.93
3127 3232 5.263185 GCGCATTATAATGACTTCGTGTTT 58.737 37.500 26.22 0.00 38.70 2.83
3128 3233 4.260620 GGCGCATTATAATGACTTCGTGTT 60.261 41.667 26.22 0.00 38.70 3.32
3129 3234 3.247648 GGCGCATTATAATGACTTCGTGT 59.752 43.478 26.22 0.00 38.70 4.49
3130 3235 3.363970 GGGCGCATTATAATGACTTCGTG 60.364 47.826 26.22 8.22 38.70 4.35
3131 3236 2.806244 GGGCGCATTATAATGACTTCGT 59.194 45.455 26.22 0.00 38.70 3.85
3132 3237 3.067106 AGGGCGCATTATAATGACTTCG 58.933 45.455 26.22 19.94 38.70 3.79
3133 3238 4.515191 TGAAGGGCGCATTATAATGACTTC 59.485 41.667 26.22 25.92 38.70 3.01
3134 3239 4.460263 TGAAGGGCGCATTATAATGACTT 58.540 39.130 26.22 21.04 38.70 3.01
3135 3240 4.085357 TGAAGGGCGCATTATAATGACT 57.915 40.909 26.22 15.28 38.70 3.41
3136 3241 6.683974 ATATGAAGGGCGCATTATAATGAC 57.316 37.500 26.22 17.13 38.70 3.06
3137 3242 7.148086 GGAAATATGAAGGGCGCATTATAATGA 60.148 37.037 26.22 5.77 38.70 2.57
3138 3243 6.974622 GGAAATATGAAGGGCGCATTATAATG 59.025 38.462 19.29 19.29 39.40 1.90
3139 3244 6.891908 AGGAAATATGAAGGGCGCATTATAAT 59.108 34.615 10.83 0.00 0.00 1.28
3140 3245 6.150976 CAGGAAATATGAAGGGCGCATTATAA 59.849 38.462 10.83 0.00 0.00 0.98
3141 3246 5.647658 CAGGAAATATGAAGGGCGCATTATA 59.352 40.000 10.83 1.76 0.00 0.98
3142 3247 4.460382 CAGGAAATATGAAGGGCGCATTAT 59.540 41.667 10.83 0.00 0.00 1.28
3143 3248 3.820467 CAGGAAATATGAAGGGCGCATTA 59.180 43.478 10.83 0.00 0.00 1.90
3144 3249 2.624838 CAGGAAATATGAAGGGCGCATT 59.375 45.455 10.83 2.51 0.00 3.56
3145 3250 2.233271 CAGGAAATATGAAGGGCGCAT 58.767 47.619 10.83 0.00 0.00 4.73
3146 3251 1.679139 CAGGAAATATGAAGGGCGCA 58.321 50.000 10.83 0.00 0.00 6.09
3147 3252 0.954452 CCAGGAAATATGAAGGGCGC 59.046 55.000 0.00 0.00 0.00 6.53
3148 3253 2.222027 GTCCAGGAAATATGAAGGGCG 58.778 52.381 0.00 0.00 0.00 6.13
3149 3254 2.952310 GTGTCCAGGAAATATGAAGGGC 59.048 50.000 0.00 0.00 0.00 5.19
3150 3255 3.947834 GTGTGTCCAGGAAATATGAAGGG 59.052 47.826 0.00 0.00 0.00 3.95
3151 3256 4.848357 AGTGTGTCCAGGAAATATGAAGG 58.152 43.478 0.00 0.00 0.00 3.46
3152 3257 5.707298 ACAAGTGTGTCCAGGAAATATGAAG 59.293 40.000 0.00 0.00 29.49 3.02
3153 3258 5.630121 ACAAGTGTGTCCAGGAAATATGAA 58.370 37.500 0.00 0.00 29.49 2.57
3154 3259 5.241403 ACAAGTGTGTCCAGGAAATATGA 57.759 39.130 0.00 0.00 29.49 2.15
3155 3260 5.241506 ACAACAAGTGTGTCCAGGAAATATG 59.758 40.000 0.00 0.00 39.72 1.78
3156 3261 5.385198 ACAACAAGTGTGTCCAGGAAATAT 58.615 37.500 0.00 0.00 39.72 1.28
3157 3262 4.787551 ACAACAAGTGTGTCCAGGAAATA 58.212 39.130 0.00 0.00 39.72 1.40
3158 3263 3.631250 ACAACAAGTGTGTCCAGGAAAT 58.369 40.909 0.00 0.00 39.72 2.17
3159 3264 3.080300 ACAACAAGTGTGTCCAGGAAA 57.920 42.857 0.00 0.00 39.72 3.13
3160 3265 2.752354 CAACAACAAGTGTGTCCAGGAA 59.248 45.455 0.00 0.00 40.60 3.36
3161 3266 2.364632 CAACAACAAGTGTGTCCAGGA 58.635 47.619 0.00 0.00 40.60 3.86
3162 3267 1.405105 CCAACAACAAGTGTGTCCAGG 59.595 52.381 0.00 0.00 40.60 4.45
3163 3268 1.405105 CCCAACAACAAGTGTGTCCAG 59.595 52.381 0.00 0.00 40.60 3.86
3164 3269 1.272203 ACCCAACAACAAGTGTGTCCA 60.272 47.619 0.00 0.00 40.60 4.02
3165 3270 1.404035 GACCCAACAACAAGTGTGTCC 59.596 52.381 0.00 0.00 40.60 4.02
3166 3271 2.088423 TGACCCAACAACAAGTGTGTC 58.912 47.619 0.00 0.00 40.60 3.67
3167 3272 2.208132 TGACCCAACAACAAGTGTGT 57.792 45.000 0.00 0.00 40.60 3.72
3168 3273 4.097135 TGTTATGACCCAACAACAAGTGTG 59.903 41.667 0.00 0.00 40.60 3.82
3169 3274 4.274147 TGTTATGACCCAACAACAAGTGT 58.726 39.130 0.00 0.00 44.64 3.55
3170 3275 4.909696 TGTTATGACCCAACAACAAGTG 57.090 40.909 0.00 0.00 33.11 3.16
3171 3276 7.309744 CCAATATGTTATGACCCAACAACAAGT 60.310 37.037 0.00 0.00 39.22 3.16
3172 3277 7.035004 CCAATATGTTATGACCCAACAACAAG 58.965 38.462 0.00 0.00 39.22 3.16
3173 3278 6.495181 ACCAATATGTTATGACCCAACAACAA 59.505 34.615 0.00 0.00 39.22 2.83
3174 3279 6.013379 ACCAATATGTTATGACCCAACAACA 58.987 36.000 0.00 0.00 39.22 3.33
3175 3280 6.524101 ACCAATATGTTATGACCCAACAAC 57.476 37.500 0.00 0.00 39.22 3.32
3176 3281 6.495181 ACAACCAATATGTTATGACCCAACAA 59.505 34.615 0.00 0.00 39.22 2.83
3177 3282 6.013379 ACAACCAATATGTTATGACCCAACA 58.987 36.000 0.00 0.00 40.01 3.33
3178 3283 6.524101 ACAACCAATATGTTATGACCCAAC 57.476 37.500 0.00 0.00 0.00 3.77
3179 3284 6.153680 GGAACAACCAATATGTTATGACCCAA 59.846 38.462 0.00 0.00 40.90 4.12
3180 3285 5.654650 GGAACAACCAATATGTTATGACCCA 59.345 40.000 0.00 0.00 40.90 4.51
3181 3286 5.068591 GGGAACAACCAATATGTTATGACCC 59.931 44.000 0.00 0.00 40.90 4.46
3182 3287 5.068591 GGGGAACAACCAATATGTTATGACC 59.931 44.000 0.00 0.00 40.90 4.02
3183 3288 5.654650 TGGGGAACAACCAATATGTTATGAC 59.345 40.000 0.00 0.00 40.90 3.06
3184 3289 5.832221 TGGGGAACAACCAATATGTTATGA 58.168 37.500 0.00 0.00 40.90 2.15
3185 3290 6.537453 TTGGGGAACAACCAATATGTTATG 57.463 37.500 0.00 0.00 42.75 1.90
3195 3300 3.835478 TGGATTATTGGGGAACAACCA 57.165 42.857 0.00 0.00 42.94 3.67
3196 3301 5.491323 TTTTGGATTATTGGGGAACAACC 57.509 39.130 0.00 0.00 42.94 3.77
3197 3302 7.994425 AAATTTTGGATTATTGGGGAACAAC 57.006 32.000 0.00 0.00 42.94 3.32
3199 3304 9.508642 GTTTAAATTTTGGATTATTGGGGAACA 57.491 29.630 0.00 0.00 0.00 3.18
3200 3305 8.952278 GGTTTAAATTTTGGATTATTGGGGAAC 58.048 33.333 0.00 0.00 0.00 3.62
3201 3306 8.669571 TGGTTTAAATTTTGGATTATTGGGGAA 58.330 29.630 0.00 0.00 0.00 3.97
3202 3307 8.103935 GTGGTTTAAATTTTGGATTATTGGGGA 58.896 33.333 0.00 0.00 0.00 4.81
3203 3308 7.885399 TGTGGTTTAAATTTTGGATTATTGGGG 59.115 33.333 0.00 0.00 0.00 4.96
3204 3309 8.854614 TGTGGTTTAAATTTTGGATTATTGGG 57.145 30.769 0.00 0.00 0.00 4.12
3212 3317 9.618890 TGAATCAAATGTGGTTTAAATTTTGGA 57.381 25.926 0.00 0.00 0.00 3.53
3217 3322 9.401058 TGGTTTGAATCAAATGTGGTTTAAATT 57.599 25.926 11.87 0.00 36.20 1.82
3218 3323 8.970859 TGGTTTGAATCAAATGTGGTTTAAAT 57.029 26.923 11.87 0.00 36.20 1.40
3219 3324 8.792830 TTGGTTTGAATCAAATGTGGTTTAAA 57.207 26.923 11.87 0.00 35.74 1.52
3220 3325 8.970859 ATTGGTTTGAATCAAATGTGGTTTAA 57.029 26.923 11.87 0.47 35.74 1.52
3221 3326 8.970859 AATTGGTTTGAATCAAATGTGGTTTA 57.029 26.923 11.87 0.00 35.74 2.01
3222 3327 7.878547 AATTGGTTTGAATCAAATGTGGTTT 57.121 28.000 11.87 0.00 35.74 3.27
3223 3328 7.555554 TGAAATTGGTTTGAATCAAATGTGGTT 59.444 29.630 11.87 4.49 35.74 3.67
3224 3329 7.052873 TGAAATTGGTTTGAATCAAATGTGGT 58.947 30.769 11.87 0.00 35.74 4.16
3225 3330 7.493743 TGAAATTGGTTTGAATCAAATGTGG 57.506 32.000 11.87 0.00 35.74 4.17
3226 3331 9.601971 GAATGAAATTGGTTTGAATCAAATGTG 57.398 29.630 11.87 0.00 36.07 3.21
3227 3332 8.785946 GGAATGAAATTGGTTTGAATCAAATGT 58.214 29.630 11.87 0.00 36.07 2.71
3228 3333 9.005777 AGGAATGAAATTGGTTTGAATCAAATG 57.994 29.630 11.87 0.00 36.07 2.32
3241 3346 9.248291 CGTCCAAATTATTAGGAATGAAATTGG 57.752 33.333 0.00 0.00 36.07 3.16
3259 3364 9.661563 TCACTACAACTAATTATTCGTCCAAAT 57.338 29.630 0.00 0.00 0.00 2.32
3260 3365 9.146984 CTCACTACAACTAATTATTCGTCCAAA 57.853 33.333 0.00 0.00 0.00 3.28
3261 3366 8.525316 TCTCACTACAACTAATTATTCGTCCAA 58.475 33.333 0.00 0.00 0.00 3.53
3262 3367 7.972277 GTCTCACTACAACTAATTATTCGTCCA 59.028 37.037 0.00 0.00 0.00 4.02
3263 3368 8.189460 AGTCTCACTACAACTAATTATTCGTCC 58.811 37.037 0.00 0.00 0.00 4.79
3264 3369 9.570488 AAGTCTCACTACAACTAATTATTCGTC 57.430 33.333 0.00 0.00 0.00 4.20
3275 3380 9.244292 TCTATCAATGTAAGTCTCACTACAACT 57.756 33.333 0.00 0.00 0.00 3.16
3276 3381 9.856488 TTCTATCAATGTAAGTCTCACTACAAC 57.144 33.333 0.00 0.00 0.00 3.32
3277 3382 9.856488 GTTCTATCAATGTAAGTCTCACTACAA 57.144 33.333 0.00 0.00 0.00 2.41
3278 3383 9.020731 TGTTCTATCAATGTAAGTCTCACTACA 57.979 33.333 0.00 0.00 0.00 2.74
3279 3384 9.856488 TTGTTCTATCAATGTAAGTCTCACTAC 57.144 33.333 0.00 0.00 0.00 2.73
3280 3385 9.856488 GTTGTTCTATCAATGTAAGTCTCACTA 57.144 33.333 0.00 0.00 0.00 2.74
3281 3386 8.589338 AGTTGTTCTATCAATGTAAGTCTCACT 58.411 33.333 0.00 0.00 0.00 3.41
3282 3387 8.764524 AGTTGTTCTATCAATGTAAGTCTCAC 57.235 34.615 0.00 0.00 0.00 3.51
3329 3434 6.070710 ACCTTTTAGACTAGTTAGCCTCTTGG 60.071 42.308 0.00 0.00 0.00 3.61
3330 3435 6.937392 ACCTTTTAGACTAGTTAGCCTCTTG 58.063 40.000 0.00 0.00 0.00 3.02
3331 3436 7.342541 CCTACCTTTTAGACTAGTTAGCCTCTT 59.657 40.741 0.00 0.00 0.00 2.85
3332 3437 6.834969 CCTACCTTTTAGACTAGTTAGCCTCT 59.165 42.308 0.00 0.00 0.00 3.69
3333 3438 6.461370 GCCTACCTTTTAGACTAGTTAGCCTC 60.461 46.154 0.00 0.00 0.00 4.70
3334 3439 5.363292 GCCTACCTTTTAGACTAGTTAGCCT 59.637 44.000 0.00 0.00 0.00 4.58
3335 3440 5.128335 TGCCTACCTTTTAGACTAGTTAGCC 59.872 44.000 0.00 0.00 0.00 3.93
3336 3441 6.218108 TGCCTACCTTTTAGACTAGTTAGC 57.782 41.667 0.00 0.00 0.00 3.09
3337 3442 6.702282 GCATGCCTACCTTTTAGACTAGTTAG 59.298 42.308 6.36 0.00 0.00 2.34
3338 3443 6.155565 TGCATGCCTACCTTTTAGACTAGTTA 59.844 38.462 16.68 0.00 0.00 2.24
3339 3444 5.045869 TGCATGCCTACCTTTTAGACTAGTT 60.046 40.000 16.68 0.00 0.00 2.24
3340 3445 4.469945 TGCATGCCTACCTTTTAGACTAGT 59.530 41.667 16.68 0.00 0.00 2.57
3341 3446 5.023533 TGCATGCCTACCTTTTAGACTAG 57.976 43.478 16.68 0.00 0.00 2.57
3342 3447 5.045869 AGTTGCATGCCTACCTTTTAGACTA 60.046 40.000 16.68 0.00 0.00 2.59
3343 3448 4.010349 GTTGCATGCCTACCTTTTAGACT 58.990 43.478 16.68 0.00 0.00 3.24
3344 3449 4.010349 AGTTGCATGCCTACCTTTTAGAC 58.990 43.478 16.68 0.00 0.00 2.59
3345 3450 4.009675 CAGTTGCATGCCTACCTTTTAGA 58.990 43.478 16.68 0.00 0.00 2.10
3346 3451 3.129287 CCAGTTGCATGCCTACCTTTTAG 59.871 47.826 16.68 0.45 0.00 1.85
3347 3452 3.088532 CCAGTTGCATGCCTACCTTTTA 58.911 45.455 16.68 0.00 0.00 1.52
3348 3453 1.895131 CCAGTTGCATGCCTACCTTTT 59.105 47.619 16.68 0.00 0.00 2.27
3349 3454 1.549203 CCAGTTGCATGCCTACCTTT 58.451 50.000 16.68 0.00 0.00 3.11
3350 3455 0.967380 GCCAGTTGCATGCCTACCTT 60.967 55.000 16.68 0.00 40.77 3.50
3351 3456 1.379044 GCCAGTTGCATGCCTACCT 60.379 57.895 16.68 2.32 40.77 3.08
3352 3457 2.418083 GGCCAGTTGCATGCCTACC 61.418 63.158 16.68 7.27 43.89 3.18
3353 3458 1.250154 TTGGCCAGTTGCATGCCTAC 61.250 55.000 16.68 13.39 45.56 3.18
3354 3459 1.076370 TTGGCCAGTTGCATGCCTA 59.924 52.632 16.68 0.00 45.56 3.93
3355 3460 2.203669 TTGGCCAGTTGCATGCCT 60.204 55.556 16.68 2.40 45.56 4.75
3356 3461 2.047939 GTTGGCCAGTTGCATGCC 60.048 61.111 16.68 9.42 45.56 4.40
3357 3462 0.531657 TATGTTGGCCAGTTGCATGC 59.468 50.000 11.82 11.82 43.89 4.06
3358 3463 3.316071 TTTATGTTGGCCAGTTGCATG 57.684 42.857 5.11 0.00 43.89 4.06
3359 3464 4.348863 TTTTTATGTTGGCCAGTTGCAT 57.651 36.364 5.11 11.93 43.89 3.96
3360 3465 3.827008 TTTTTATGTTGGCCAGTTGCA 57.173 38.095 5.11 4.61 43.89 4.08
3382 3487 0.460311 CTGCAACTAGACCGGTAGGG 59.540 60.000 7.34 2.39 43.47 3.53
3383 3488 1.134560 GACTGCAACTAGACCGGTAGG 59.865 57.143 7.34 2.81 45.13 3.18
3384 3489 1.816835 TGACTGCAACTAGACCGGTAG 59.183 52.381 7.34 4.55 0.00 3.18
3385 3490 1.913778 TGACTGCAACTAGACCGGTA 58.086 50.000 7.34 0.00 0.00 4.02
3386 3491 1.204941 GATGACTGCAACTAGACCGGT 59.795 52.381 6.92 6.92 0.00 5.28
3387 3492 1.204704 TGATGACTGCAACTAGACCGG 59.795 52.381 0.00 0.00 0.00 5.28
3388 3493 2.654749 TGATGACTGCAACTAGACCG 57.345 50.000 0.00 0.00 0.00 4.79
3389 3494 3.201290 CCATGATGACTGCAACTAGACC 58.799 50.000 0.00 0.00 0.00 3.85
3390 3495 3.620374 CACCATGATGACTGCAACTAGAC 59.380 47.826 0.00 0.00 0.00 2.59
3391 3496 3.865446 CACCATGATGACTGCAACTAGA 58.135 45.455 0.00 0.00 0.00 2.43
3392 3497 2.353889 GCACCATGATGACTGCAACTAG 59.646 50.000 9.36 0.00 0.00 2.57
3393 3498 2.358957 GCACCATGATGACTGCAACTA 58.641 47.619 9.36 0.00 0.00 2.24
3394 3499 1.171308 GCACCATGATGACTGCAACT 58.829 50.000 9.36 0.00 0.00 3.16
3395 3500 0.171903 GGCACCATGATGACTGCAAC 59.828 55.000 14.36 0.00 0.00 4.17
3396 3501 2.570365 GGCACCATGATGACTGCAA 58.430 52.632 14.36 0.00 0.00 4.08
3397 3502 4.324471 GGCACCATGATGACTGCA 57.676 55.556 14.36 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.