Multiple sequence alignment - TraesCS1B01G361200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G361200 chr1B 100.000 2780 0 0 1 2780 589760950 589758171 0.000000e+00 5134.0
1 TraesCS1B01G361200 chr1B 83.333 330 36 6 990 1319 589499233 589498923 1.260000e-73 287.0
2 TraesCS1B01G361200 chr1B 97.059 34 1 0 2413 2446 589758420 589758387 1.080000e-04 58.4
3 TraesCS1B01G361200 chr1B 97.059 34 1 0 2531 2564 589758538 589758505 1.080000e-04 58.4
4 TraesCS1B01G361200 chr1D 91.313 1439 89 15 471 1891 436024259 436022839 0.000000e+00 1932.0
5 TraesCS1B01G361200 chr1D 91.525 177 14 1 2571 2747 435972107 435971932 2.770000e-60 243.0
6 TraesCS1B01G361200 chr1D 91.525 177 14 1 2571 2747 436014326 436014151 2.770000e-60 243.0
7 TraesCS1B01G361200 chr1D 91.429 175 14 1 2573 2747 435975102 435974929 3.580000e-59 239.0
8 TraesCS1B01G361200 chr1D 92.667 150 11 0 2596 2745 435953873 435953724 1.680000e-52 217.0
9 TraesCS1B01G361200 chr1D 82.941 170 17 7 766 927 435939571 435939406 2.890000e-30 143.0
10 TraesCS1B01G361200 chr1D 90.526 95 6 2 383 476 444854260 444854168 3.760000e-24 122.0
11 TraesCS1B01G361200 chr1D 89.888 89 5 3 2429 2515 435972202 435972116 8.140000e-21 111.0
12 TraesCS1B01G361200 chr1D 89.610 77 5 2 2440 2516 435937887 435937814 8.200000e-16 95.3
13 TraesCS1B01G361200 chr1A 89.328 1265 90 24 557 1802 533213647 533212409 0.000000e+00 1546.0
14 TraesCS1B01G361200 chr1A 88.082 537 36 12 1801 2328 533212326 533211809 1.830000e-171 612.0
15 TraesCS1B01G361200 chr1A 91.787 207 13 2 2572 2778 533211535 533211333 4.530000e-73 285.0
16 TraesCS1B01G361200 chr1A 81.686 344 39 8 978 1321 533168243 533167924 5.900000e-67 265.0
17 TraesCS1B01G361200 chr1A 76.676 343 42 22 212 546 533216617 533216305 3.710000e-34 156.0
18 TraesCS1B01G361200 chr1A 82.065 184 24 7 2591 2769 533167436 533167257 6.200000e-32 148.0
19 TraesCS1B01G361200 chr1A 88.350 103 7 5 377 477 392083016 392082917 4.860000e-23 119.0
20 TraesCS1B01G361200 chr2D 94.318 88 3 1 383 470 509477741 509477656 1.740000e-27 134.0
21 TraesCS1B01G361200 chr7D 91.489 94 5 2 384 476 562392887 562392796 2.910000e-25 126.0
22 TraesCS1B01G361200 chr7D 90.426 94 5 2 383 475 617804790 617804880 1.350000e-23 121.0
23 TraesCS1B01G361200 chr5D 93.182 88 3 2 383 469 196857574 196857659 2.910000e-25 126.0
24 TraesCS1B01G361200 chr6D 90.000 100 5 4 371 469 146072812 146072907 1.050000e-24 124.0
25 TraesCS1B01G361200 chr4D 86.777 121 5 10 364 482 403409632 403409521 1.050000e-24 124.0
26 TraesCS1B01G361200 chr4D 90.526 95 6 2 384 477 333063273 333063365 3.760000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G361200 chr1B 589758171 589760950 2779 True 1750.266667 5134 98.039333 1 2780 3 chr1B.!!$R2 2779
1 TraesCS1B01G361200 chr1D 436022839 436024259 1420 True 1932.000000 1932 91.313000 471 1891 1 chr1D.!!$R3 1420
2 TraesCS1B01G361200 chr1A 533211333 533216617 5284 True 649.750000 1546 86.468250 212 2778 4 chr1A.!!$R3 2566
3 TraesCS1B01G361200 chr1A 533167257 533168243 986 True 206.500000 265 81.875500 978 2769 2 chr1A.!!$R2 1791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.036875 CCACTCCAACCCTTCAGTCC 59.963 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 4741 0.040958 CGGAGCCATAAGATTTGCGC 60.041 55.0 0.0 0.0 0.0 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.591703 TCATGAGCGTGACCACTCC 59.408 57.895 0.00 0.00 31.65 3.85
19 20 1.184970 TCATGAGCGTGACCACTCCA 61.185 55.000 0.00 0.00 31.65 3.86
20 21 0.320683 CATGAGCGTGACCACTCCAA 60.321 55.000 0.00 0.00 31.65 3.53
21 22 0.320771 ATGAGCGTGACCACTCCAAC 60.321 55.000 0.00 0.00 31.65 3.77
22 23 1.668151 GAGCGTGACCACTCCAACC 60.668 63.158 0.00 0.00 0.00 3.77
23 24 2.668550 GCGTGACCACTCCAACCC 60.669 66.667 0.00 0.00 0.00 4.11
24 25 3.148084 CGTGACCACTCCAACCCT 58.852 61.111 0.00 0.00 0.00 4.34
25 26 1.450211 CGTGACCACTCCAACCCTT 59.550 57.895 0.00 0.00 0.00 3.95
26 27 0.602905 CGTGACCACTCCAACCCTTC 60.603 60.000 0.00 0.00 0.00 3.46
27 28 0.472471 GTGACCACTCCAACCCTTCA 59.528 55.000 0.00 0.00 0.00 3.02
28 29 0.764890 TGACCACTCCAACCCTTCAG 59.235 55.000 0.00 0.00 0.00 3.02
29 30 0.765510 GACCACTCCAACCCTTCAGT 59.234 55.000 0.00 0.00 0.00 3.41
30 31 0.765510 ACCACTCCAACCCTTCAGTC 59.234 55.000 0.00 0.00 0.00 3.51
31 32 0.036875 CCACTCCAACCCTTCAGTCC 59.963 60.000 0.00 0.00 0.00 3.85
32 33 1.059913 CACTCCAACCCTTCAGTCCT 58.940 55.000 0.00 0.00 0.00 3.85
33 34 1.421646 CACTCCAACCCTTCAGTCCTT 59.578 52.381 0.00 0.00 0.00 3.36
34 35 2.136026 ACTCCAACCCTTCAGTCCTTT 58.864 47.619 0.00 0.00 0.00 3.11
35 36 2.514160 ACTCCAACCCTTCAGTCCTTTT 59.486 45.455 0.00 0.00 0.00 2.27
36 37 3.720002 ACTCCAACCCTTCAGTCCTTTTA 59.280 43.478 0.00 0.00 0.00 1.52
37 38 4.354087 ACTCCAACCCTTCAGTCCTTTTAT 59.646 41.667 0.00 0.00 0.00 1.40
38 39 5.162980 ACTCCAACCCTTCAGTCCTTTTATT 60.163 40.000 0.00 0.00 0.00 1.40
39 40 5.711698 TCCAACCCTTCAGTCCTTTTATTT 58.288 37.500 0.00 0.00 0.00 1.40
40 41 6.140377 TCCAACCCTTCAGTCCTTTTATTTT 58.860 36.000 0.00 0.00 0.00 1.82
41 42 6.613679 TCCAACCCTTCAGTCCTTTTATTTTT 59.386 34.615 0.00 0.00 0.00 1.94
42 43 6.705825 CCAACCCTTCAGTCCTTTTATTTTTG 59.294 38.462 0.00 0.00 0.00 2.44
43 44 6.419484 ACCCTTCAGTCCTTTTATTTTTGG 57.581 37.500 0.00 0.00 0.00 3.28
44 45 5.221641 ACCCTTCAGTCCTTTTATTTTTGGC 60.222 40.000 0.00 0.00 0.00 4.52
45 46 4.923281 CCTTCAGTCCTTTTATTTTTGGCG 59.077 41.667 0.00 0.00 0.00 5.69
46 47 4.513198 TCAGTCCTTTTATTTTTGGCGG 57.487 40.909 0.00 0.00 0.00 6.13
47 48 3.257127 TCAGTCCTTTTATTTTTGGCGGG 59.743 43.478 0.00 0.00 0.00 6.13
48 49 3.257127 CAGTCCTTTTATTTTTGGCGGGA 59.743 43.478 0.00 0.00 0.00 5.14
49 50 4.081697 CAGTCCTTTTATTTTTGGCGGGAT 60.082 41.667 0.00 0.00 0.00 3.85
50 51 4.159693 AGTCCTTTTATTTTTGGCGGGATC 59.840 41.667 0.00 0.00 0.00 3.36
51 52 3.449377 TCCTTTTATTTTTGGCGGGATCC 59.551 43.478 1.92 1.92 0.00 3.36
52 53 3.196685 CCTTTTATTTTTGGCGGGATCCA 59.803 43.478 15.23 0.00 0.00 3.41
53 54 4.323104 CCTTTTATTTTTGGCGGGATCCAA 60.323 41.667 15.23 0.00 43.84 3.53
54 55 3.878160 TTATTTTTGGCGGGATCCAAC 57.122 42.857 15.23 4.20 45.08 3.77
55 56 0.901827 ATTTTTGGCGGGATCCAACC 59.098 50.000 15.23 14.56 45.08 3.77
56 57 1.188871 TTTTTGGCGGGATCCAACCC 61.189 55.000 15.23 10.67 45.08 4.11
57 58 2.087857 TTTTGGCGGGATCCAACCCT 62.088 55.000 15.23 0.00 45.08 4.34
58 59 2.087857 TTTGGCGGGATCCAACCCTT 62.088 55.000 15.23 0.00 45.08 3.95
59 60 3.958980 TTTGGCGGGATCCAACCCTTC 62.959 57.143 15.23 0.00 45.08 3.46
63 64 3.884226 GGGATCCAACCCTTCAGTC 57.116 57.895 15.23 0.00 45.90 3.51
64 65 0.256177 GGGATCCAACCCTTCAGTCC 59.744 60.000 15.23 0.00 45.90 3.85
65 66 1.290134 GGATCCAACCCTTCAGTCCT 58.710 55.000 6.95 0.00 0.00 3.85
66 67 1.636003 GGATCCAACCCTTCAGTCCTT 59.364 52.381 6.95 0.00 0.00 3.36
67 68 2.619074 GGATCCAACCCTTCAGTCCTTG 60.619 54.545 6.95 0.00 0.00 3.61
68 69 1.518367 TCCAACCCTTCAGTCCTTGT 58.482 50.000 0.00 0.00 0.00 3.16
69 70 2.696775 TCCAACCCTTCAGTCCTTGTA 58.303 47.619 0.00 0.00 0.00 2.41
70 71 2.637872 TCCAACCCTTCAGTCCTTGTAG 59.362 50.000 0.00 0.00 0.00 2.74
71 72 2.372172 CCAACCCTTCAGTCCTTGTAGT 59.628 50.000 0.00 0.00 0.00 2.73
72 73 3.581332 CCAACCCTTCAGTCCTTGTAGTA 59.419 47.826 0.00 0.00 0.00 1.82
73 74 4.562963 CCAACCCTTCAGTCCTTGTAGTAC 60.563 50.000 0.00 0.00 0.00 2.73
74 75 3.171528 ACCCTTCAGTCCTTGTAGTACC 58.828 50.000 0.00 0.00 0.00 3.34
75 76 3.170717 CCCTTCAGTCCTTGTAGTACCA 58.829 50.000 0.00 0.00 0.00 3.25
76 77 3.581332 CCCTTCAGTCCTTGTAGTACCAA 59.419 47.826 0.00 0.00 0.00 3.67
77 78 4.322801 CCCTTCAGTCCTTGTAGTACCAAG 60.323 50.000 0.00 5.22 41.21 3.61
78 79 4.283722 CCTTCAGTCCTTGTAGTACCAAGT 59.716 45.833 9.97 0.00 40.17 3.16
79 80 5.479375 CCTTCAGTCCTTGTAGTACCAAGTA 59.521 44.000 9.97 0.00 40.17 2.24
80 81 6.154706 CCTTCAGTCCTTGTAGTACCAAGTAT 59.845 42.308 9.97 0.00 40.17 2.12
81 82 7.341256 CCTTCAGTCCTTGTAGTACCAAGTATA 59.659 40.741 9.97 0.00 40.17 1.47
82 83 7.876936 TCAGTCCTTGTAGTACCAAGTATAG 57.123 40.000 9.97 0.00 40.17 1.31
83 84 7.408543 TCAGTCCTTGTAGTACCAAGTATAGT 58.591 38.462 9.97 0.00 40.17 2.12
84 85 8.551440 TCAGTCCTTGTAGTACCAAGTATAGTA 58.449 37.037 9.97 0.00 40.17 1.82
85 86 8.838365 CAGTCCTTGTAGTACCAAGTATAGTAG 58.162 40.741 9.97 0.00 40.17 2.57
86 87 8.555729 AGTCCTTGTAGTACCAAGTATAGTAGT 58.444 37.037 9.97 0.00 40.17 2.73
87 88 8.619546 GTCCTTGTAGTACCAAGTATAGTAGTG 58.380 40.741 9.97 0.00 40.17 2.74
88 89 7.284034 TCCTTGTAGTACCAAGTATAGTAGTGC 59.716 40.741 9.97 0.00 40.17 4.40
89 90 6.949352 TGTAGTACCAAGTATAGTAGTGCC 57.051 41.667 0.00 0.00 0.00 5.01
90 91 5.829924 TGTAGTACCAAGTATAGTAGTGCCC 59.170 44.000 0.00 0.00 0.00 5.36
91 92 4.875389 AGTACCAAGTATAGTAGTGCCCA 58.125 43.478 0.00 0.00 0.00 5.36
92 93 4.894114 AGTACCAAGTATAGTAGTGCCCAG 59.106 45.833 0.00 0.00 0.00 4.45
93 94 3.721021 ACCAAGTATAGTAGTGCCCAGT 58.279 45.455 0.00 0.00 0.00 4.00
94 95 4.875389 ACCAAGTATAGTAGTGCCCAGTA 58.125 43.478 0.00 0.00 0.00 2.74
95 96 5.274822 ACCAAGTATAGTAGTGCCCAGTAA 58.725 41.667 0.00 0.00 0.00 2.24
96 97 5.722923 ACCAAGTATAGTAGTGCCCAGTAAA 59.277 40.000 0.00 0.00 0.00 2.01
97 98 6.386050 ACCAAGTATAGTAGTGCCCAGTAAAT 59.614 38.462 0.00 0.00 0.00 1.40
98 99 7.092578 ACCAAGTATAGTAGTGCCCAGTAAATT 60.093 37.037 0.00 0.00 0.00 1.82
99 100 8.426489 CCAAGTATAGTAGTGCCCAGTAAATTA 58.574 37.037 0.00 0.00 0.00 1.40
100 101 9.998106 CAAGTATAGTAGTGCCCAGTAAATTAT 57.002 33.333 0.00 0.00 0.00 1.28
106 107 8.320338 AGTAGTGCCCAGTAAATTATAAGAGT 57.680 34.615 0.00 0.00 0.00 3.24
107 108 9.430399 AGTAGTGCCCAGTAAATTATAAGAGTA 57.570 33.333 0.00 0.00 0.00 2.59
108 109 9.694137 GTAGTGCCCAGTAAATTATAAGAGTAG 57.306 37.037 0.00 0.00 0.00 2.57
109 110 8.548880 AGTGCCCAGTAAATTATAAGAGTAGA 57.451 34.615 0.00 0.00 0.00 2.59
110 111 9.160412 AGTGCCCAGTAAATTATAAGAGTAGAT 57.840 33.333 0.00 0.00 0.00 1.98
111 112 9.780186 GTGCCCAGTAAATTATAAGAGTAGATT 57.220 33.333 0.00 0.00 0.00 2.40
145 146 9.846248 AATATCACTTTGCAAGAATGTCTTAAC 57.154 29.630 0.00 0.00 33.78 2.01
146 147 6.691754 TCACTTTGCAAGAATGTCTTAACA 57.308 33.333 0.00 0.00 33.78 2.41
148 149 7.362662 TCACTTTGCAAGAATGTCTTAACATC 58.637 34.615 0.00 0.00 45.48 3.06
149 150 6.583806 CACTTTGCAAGAATGTCTTAACATCC 59.416 38.462 0.00 0.00 45.48 3.51
150 151 6.491403 ACTTTGCAAGAATGTCTTAACATCCT 59.509 34.615 0.00 0.00 45.48 3.24
151 152 6.899393 TTGCAAGAATGTCTTAACATCCTT 57.101 33.333 0.00 0.00 45.48 3.36
152 153 7.994425 TTGCAAGAATGTCTTAACATCCTTA 57.006 32.000 0.00 0.00 45.48 2.69
153 154 7.994425 TGCAAGAATGTCTTAACATCCTTAA 57.006 32.000 0.00 0.00 45.48 1.85
154 155 8.579850 TGCAAGAATGTCTTAACATCCTTAAT 57.420 30.769 0.00 0.00 45.48 1.40
155 156 9.679661 TGCAAGAATGTCTTAACATCCTTAATA 57.320 29.630 0.00 0.00 45.48 0.98
163 164 8.915036 TGTCTTAACATCCTTAATAGACTCTCC 58.085 37.037 0.00 0.00 0.00 3.71
164 165 8.915036 GTCTTAACATCCTTAATAGACTCTCCA 58.085 37.037 0.00 0.00 0.00 3.86
165 166 9.661954 TCTTAACATCCTTAATAGACTCTCCAT 57.338 33.333 0.00 0.00 0.00 3.41
169 170 8.644374 ACATCCTTAATAGACTCTCCATAGTC 57.356 38.462 0.00 0.00 45.20 2.59
170 171 8.228206 ACATCCTTAATAGACTCTCCATAGTCA 58.772 37.037 6.76 0.00 46.89 3.41
171 172 9.083422 CATCCTTAATAGACTCTCCATAGTCAA 57.917 37.037 6.76 0.00 46.89 3.18
172 173 9.836179 ATCCTTAATAGACTCTCCATAGTCAAT 57.164 33.333 6.76 0.00 46.89 2.57
173 174 9.083422 TCCTTAATAGACTCTCCATAGTCAATG 57.917 37.037 6.76 0.00 46.89 2.82
250 251 7.083858 GCATGTAGCTTTTATGACTTCAACAA 58.916 34.615 0.00 0.00 41.15 2.83
336 337 5.753713 CTAAGTTAGGATGAATCGATGCG 57.246 43.478 0.00 0.00 0.00 4.73
353 360 1.068610 TGCGTTCCTTGCACAATTAGC 60.069 47.619 0.00 0.00 37.44 3.09
359 366 3.076621 TCCTTGCACAATTAGCAGTGAG 58.923 45.455 0.00 1.46 43.75 3.51
360 367 2.415090 CCTTGCACAATTAGCAGTGAGC 60.415 50.000 0.00 0.00 43.75 4.26
370 377 3.664930 GCAGTGAGCGACAAACATC 57.335 52.632 0.00 0.00 0.00 3.06
379 386 6.090898 AGTGAGCGACAAACATCAGTAATAAC 59.909 38.462 0.00 0.00 0.00 1.89
382 389 7.061752 AGCGACAAACATCAGTAATAACTTC 57.938 36.000 0.00 0.00 31.97 3.01
389 406 9.099454 CAAACATCAGTAATAACTTCTACTCCC 57.901 37.037 0.00 0.00 31.97 4.30
396 413 2.903375 AACTTCTACTCCCTCCGTCT 57.097 50.000 0.00 0.00 0.00 4.18
403 420 5.837770 TCTACTCCCTCCGTCTCATAATA 57.162 43.478 0.00 0.00 0.00 0.98
405 422 7.506361 TCTACTCCCTCCGTCTCATAATATA 57.494 40.000 0.00 0.00 0.00 0.86
406 423 7.925622 TCTACTCCCTCCGTCTCATAATATAA 58.074 38.462 0.00 0.00 0.00 0.98
407 424 8.047911 TCTACTCCCTCCGTCTCATAATATAAG 58.952 40.741 0.00 0.00 0.00 1.73
408 425 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
409 426 6.887545 ACTCCCTCCGTCTCATAATATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
411 428 5.449314 CCCTCCGTCTCATAATATAAGAGCG 60.449 48.000 0.00 0.00 0.00 5.03
412 429 4.982999 TCCGTCTCATAATATAAGAGCGC 58.017 43.478 0.00 0.00 32.01 5.92
413 430 3.786576 CCGTCTCATAATATAAGAGCGCG 59.213 47.826 0.00 0.00 32.01 6.86
414 431 4.436986 CCGTCTCATAATATAAGAGCGCGA 60.437 45.833 12.10 0.00 33.06 5.87
415 432 5.267009 CGTCTCATAATATAAGAGCGCGAT 58.733 41.667 12.10 1.23 33.06 4.58
416 433 5.739630 CGTCTCATAATATAAGAGCGCGATT 59.260 40.000 12.10 3.18 33.06 3.34
417 434 6.251589 CGTCTCATAATATAAGAGCGCGATTT 59.748 38.462 12.10 0.00 33.06 2.17
418 435 7.201359 CGTCTCATAATATAAGAGCGCGATTTT 60.201 37.037 12.10 8.17 33.06 1.82
419 436 7.895259 GTCTCATAATATAAGAGCGCGATTTTG 59.105 37.037 12.10 4.43 0.00 2.44
420 437 7.812669 TCTCATAATATAAGAGCGCGATTTTGA 59.187 33.333 12.10 8.68 0.00 2.69
421 438 8.479313 TCATAATATAAGAGCGCGATTTTGAT 57.521 30.769 12.10 0.05 0.00 2.57
422 439 9.581099 TCATAATATAAGAGCGCGATTTTGATA 57.419 29.630 12.10 4.89 0.00 2.15
423 440 9.625009 CATAATATAAGAGCGCGATTTTGATAC 57.375 33.333 12.10 0.00 0.00 2.24
424 441 7.891183 AATATAAGAGCGCGATTTTGATACT 57.109 32.000 12.10 0.00 0.00 2.12
425 442 8.981724 AATATAAGAGCGCGATTTTGATACTA 57.018 30.769 12.10 0.00 0.00 1.82
426 443 6.936222 ATAAGAGCGCGATTTTGATACTAG 57.064 37.500 12.10 0.00 0.00 2.57
427 444 4.308899 AGAGCGCGATTTTGATACTAGT 57.691 40.909 12.10 0.00 0.00 2.57
428 445 4.045104 AGAGCGCGATTTTGATACTAGTG 58.955 43.478 12.10 0.00 0.00 2.74
429 446 3.782046 AGCGCGATTTTGATACTAGTGT 58.218 40.909 12.10 0.00 0.00 3.55
430 447 4.928601 AGCGCGATTTTGATACTAGTGTA 58.071 39.130 12.10 0.00 0.00 2.90
431 448 4.976731 AGCGCGATTTTGATACTAGTGTAG 59.023 41.667 12.10 0.00 31.51 2.74
432 449 4.738740 GCGCGATTTTGATACTAGTGTAGT 59.261 41.667 12.10 0.00 42.68 2.73
433 450 5.331607 GCGCGATTTTGATACTAGTGTAGTG 60.332 44.000 12.10 0.00 39.81 2.74
434 451 5.742453 CGCGATTTTGATACTAGTGTAGTGT 59.258 40.000 0.00 0.00 39.81 3.55
461 478 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
463 480 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
464 481 5.715279 CACTCTTATATTATGGGACGGAGGA 59.285 44.000 0.00 0.00 0.00 3.71
466 483 6.437793 ACTCTTATATTATGGGACGGAGGAAG 59.562 42.308 0.00 0.00 0.00 3.46
467 484 6.320518 TCTTATATTATGGGACGGAGGAAGT 58.679 40.000 0.00 0.00 0.00 3.01
468 485 7.472741 TCTTATATTATGGGACGGAGGAAGTA 58.527 38.462 0.00 0.00 0.00 2.24
469 486 7.614583 TCTTATATTATGGGACGGAGGAAGTAG 59.385 40.741 0.00 0.00 0.00 2.57
567 3231 0.961753 CTTGAAGGTTTGTCAGGGGC 59.038 55.000 0.00 0.00 0.00 5.80
586 3250 3.013219 GGCCAATGTCTCTCTTTTCCTC 58.987 50.000 0.00 0.00 0.00 3.71
593 3257 3.256136 TGTCTCTCTTTTCCTCCGAGAAC 59.744 47.826 0.00 0.00 33.78 3.01
631 3300 9.914131 TCAGCAGTAGTGATGTGTATATATTTC 57.086 33.333 15.11 0.00 41.12 2.17
670 3339 1.340991 GGCATCTAGAAACCTTGCCCA 60.341 52.381 19.50 0.00 45.63 5.36
689 3358 4.746611 GCCCAGATTCAAAGTTTCAAACAG 59.253 41.667 2.41 0.00 0.00 3.16
696 3365 2.341846 AAGTTTCAAACAGGAGCCGA 57.658 45.000 2.41 0.00 0.00 5.54
708 3377 5.353394 ACAGGAGCCGATTATTCTTTGTA 57.647 39.130 0.00 0.00 0.00 2.41
721 3390 8.842358 ATTATTCTTTGTAAGACCGAAGACAA 57.158 30.769 0.00 0.00 37.23 3.18
724 3393 2.427232 TGTAAGACCGAAGACAACCG 57.573 50.000 0.00 0.00 0.00 4.44
726 3395 2.884012 TGTAAGACCGAAGACAACCGTA 59.116 45.455 0.00 0.00 0.00 4.02
728 3397 2.649331 AGACCGAAGACAACCGTATG 57.351 50.000 0.00 0.00 0.00 2.39
730 3399 2.094854 AGACCGAAGACAACCGTATGAC 60.095 50.000 0.00 0.00 0.00 3.06
731 3400 1.891150 ACCGAAGACAACCGTATGACT 59.109 47.619 0.00 0.00 0.00 3.41
733 3402 3.507233 ACCGAAGACAACCGTATGACTAA 59.493 43.478 0.00 0.00 0.00 2.24
736 3405 5.163723 CCGAAGACAACCGTATGACTAACTA 60.164 44.000 0.00 0.00 0.00 2.24
737 3406 6.459298 CCGAAGACAACCGTATGACTAACTAT 60.459 42.308 0.00 0.00 0.00 2.12
738 3407 6.632035 CGAAGACAACCGTATGACTAACTATC 59.368 42.308 0.00 0.00 0.00 2.08
739 3408 7.400599 AAGACAACCGTATGACTAACTATCA 57.599 36.000 0.00 0.00 0.00 2.15
740 3409 6.793349 AGACAACCGTATGACTAACTATCAC 58.207 40.000 0.00 0.00 0.00 3.06
741 3410 6.602406 AGACAACCGTATGACTAACTATCACT 59.398 38.462 0.00 0.00 0.00 3.41
742 3411 6.793349 ACAACCGTATGACTAACTATCACTC 58.207 40.000 0.00 0.00 0.00 3.51
743 3412 6.183360 ACAACCGTATGACTAACTATCACTCC 60.183 42.308 0.00 0.00 0.00 3.85
744 3413 5.692928 ACCGTATGACTAACTATCACTCCT 58.307 41.667 0.00 0.00 0.00 3.69
745 3414 5.764192 ACCGTATGACTAACTATCACTCCTC 59.236 44.000 0.00 0.00 0.00 3.71
746 3415 5.107026 CCGTATGACTAACTATCACTCCTCG 60.107 48.000 0.00 0.00 0.00 4.63
747 3416 5.107026 CGTATGACTAACTATCACTCCTCGG 60.107 48.000 0.00 0.00 0.00 4.63
748 3417 3.552875 TGACTAACTATCACTCCTCGGG 58.447 50.000 0.00 0.00 0.00 5.14
749 3418 3.053842 TGACTAACTATCACTCCTCGGGT 60.054 47.826 0.00 0.00 0.00 5.28
750 3419 3.288964 ACTAACTATCACTCCTCGGGTG 58.711 50.000 0.00 0.00 36.17 4.61
751 3420 0.824759 AACTATCACTCCTCGGGTGC 59.175 55.000 0.00 0.00 34.97 5.01
777 3446 4.203654 GGGTACCGAGAAGAGATGTTTT 57.796 45.455 5.65 0.00 40.86 2.43
778 3447 4.576879 GGGTACCGAGAAGAGATGTTTTT 58.423 43.478 5.65 0.00 40.86 1.94
806 3480 2.802247 TGTGAGTTGCGATCAAAGTCAG 59.198 45.455 13.38 0.00 31.70 3.51
807 3481 2.802816 GTGAGTTGCGATCAAAGTCAGT 59.197 45.455 13.38 0.00 31.70 3.41
808 3482 3.059884 TGAGTTGCGATCAAAGTCAGTC 58.940 45.455 10.27 0.00 33.37 3.51
809 3483 2.061773 AGTTGCGATCAAAGTCAGTCG 58.938 47.619 0.00 0.00 37.17 4.18
810 3484 2.058798 GTTGCGATCAAAGTCAGTCGA 58.941 47.619 0.00 0.00 36.25 4.20
811 3485 2.654749 TGCGATCAAAGTCAGTCGAT 57.345 45.000 0.00 0.00 36.25 3.59
823 3497 1.611977 TCAGTCGATCGTGTCAAACCT 59.388 47.619 15.94 0.00 0.00 3.50
836 3510 5.406649 GTGTCAAACCTGTCACAAATGAAA 58.593 37.500 0.00 0.00 40.18 2.69
840 3514 6.912591 GTCAAACCTGTCACAAATGAAACTAG 59.087 38.462 0.00 0.00 36.31 2.57
843 3517 3.120199 CCTGTCACAAATGAAACTAGGCG 60.120 47.826 0.00 0.00 36.31 5.52
844 3518 2.811431 TGTCACAAATGAAACTAGGCGG 59.189 45.455 0.00 0.00 36.31 6.13
851 3528 1.344065 TGAAACTAGGCGGAACTCCA 58.656 50.000 0.00 0.00 34.29 3.86
853 3530 1.001633 GAAACTAGGCGGAACTCCACA 59.998 52.381 0.00 0.00 34.29 4.17
855 3532 2.154567 ACTAGGCGGAACTCCACATA 57.845 50.000 0.00 0.00 34.29 2.29
910 3592 5.395990 CCCACTTATAAGACCAACACCGTAT 60.396 44.000 19.38 0.00 0.00 3.06
913 3595 6.475727 CACTTATAAGACCAACACCGTATGAG 59.524 42.308 19.38 0.00 0.00 2.90
947 3629 5.513233 AGAATCATGTGGGCTTTTCATACT 58.487 37.500 0.00 0.00 0.00 2.12
957 3639 4.039366 GGGCTTTTCATACTACCGATCTCT 59.961 45.833 0.00 0.00 0.00 3.10
1527 4218 2.089936 GCGCATGAACGTGACGGTA 61.090 57.895 10.66 0.00 34.88 4.02
1538 4229 0.381089 GTGACGGTAGACATCCTCGG 59.619 60.000 0.00 0.00 0.00 4.63
1795 4486 1.065126 GCTGATTAGAGGGTGCCTTGT 60.065 52.381 0.00 0.00 31.76 3.16
1816 4591 7.362056 CCTTGTCAATTAGATGATGGTTTTCGT 60.362 37.037 0.00 0.00 0.00 3.85
1841 4616 5.885912 AGATGTTGCTTCCGTTTTGGTATAT 59.114 36.000 0.00 0.00 39.52 0.86
1842 4617 7.051623 AGATGTTGCTTCCGTTTTGGTATATA 58.948 34.615 0.00 0.00 39.52 0.86
1871 4647 2.095567 AGTACGTCGCGTGTACATTCTT 60.096 45.455 30.78 16.65 43.61 2.52
1913 4689 1.285962 ACCCCCTCATTCTCATGGTTG 59.714 52.381 0.00 0.00 0.00 3.77
1928 4704 4.690748 TCATGGTTGAAAAACGCACAAAAA 59.309 33.333 0.00 0.00 35.09 1.94
1932 4708 5.049405 TGGTTGAAAAACGCACAAAAATTGT 60.049 32.000 0.00 0.00 40.18 2.71
1941 4717 8.635877 AAACGCACAAAAATTGTTGTCTATTA 57.364 26.923 11.20 0.00 43.23 0.98
1942 4718 8.635877 AACGCACAAAAATTGTTGTCTATTAA 57.364 26.923 11.20 0.00 43.23 1.40
1943 4719 8.810652 ACGCACAAAAATTGTTGTCTATTAAT 57.189 26.923 11.20 0.00 43.23 1.40
1944 4720 9.255304 ACGCACAAAAATTGTTGTCTATTAATT 57.745 25.926 11.20 0.00 43.23 1.40
1945 4721 9.726034 CGCACAAAAATTGTTGTCTATTAATTC 57.274 29.630 11.20 0.00 43.23 2.17
1973 4749 6.966021 TCTTAATTAATAGGTGGCGCAAATC 58.034 36.000 10.83 0.00 0.00 2.17
1977 4753 7.524717 AATTAATAGGTGGCGCAAATCTTAT 57.475 32.000 10.83 0.00 0.00 1.73
1978 4754 4.836125 AATAGGTGGCGCAAATCTTATG 57.164 40.909 10.83 0.00 0.00 1.90
2045 4822 8.979574 GTAACAACTCTGGAAGCATATATACAC 58.020 37.037 0.00 0.00 0.00 2.90
2051 4828 8.870116 ACTCTGGAAGCATATATACACATACAA 58.130 33.333 0.00 0.00 0.00 2.41
2073 4850 6.210185 ACAAAGAGGAGCAAGCAATTAAAGAT 59.790 34.615 0.00 0.00 0.00 2.40
2074 4851 5.831702 AGAGGAGCAAGCAATTAAAGATG 57.168 39.130 0.00 0.00 0.00 2.90
2075 4852 5.503927 AGAGGAGCAAGCAATTAAAGATGA 58.496 37.500 0.00 0.00 0.00 2.92
2076 4853 6.127793 AGAGGAGCAAGCAATTAAAGATGAT 58.872 36.000 0.00 0.00 0.00 2.45
2077 4854 7.285566 AGAGGAGCAAGCAATTAAAGATGATA 58.714 34.615 0.00 0.00 0.00 2.15
2078 4855 7.943447 AGAGGAGCAAGCAATTAAAGATGATAT 59.057 33.333 0.00 0.00 0.00 1.63
2079 4856 9.224267 GAGGAGCAAGCAATTAAAGATGATATA 57.776 33.333 0.00 0.00 0.00 0.86
2080 4857 9.750783 AGGAGCAAGCAATTAAAGATGATATAT 57.249 29.630 0.00 0.00 0.00 0.86
2088 4865 9.132521 GCAATTAAAGATGATATATTTGCGCTT 57.867 29.630 9.73 0.00 30.85 4.68
2112 4889 4.957954 AGTACCAGATTGATTACCGTACCA 59.042 41.667 0.00 0.00 0.00 3.25
2122 4899 5.969423 TGATTACCGTACCAGGTTTTCTAG 58.031 41.667 0.00 0.00 43.00 2.43
2147 4924 0.462937 ACAGCAACTACGCCAACACA 60.463 50.000 0.00 0.00 0.00 3.72
2171 4978 6.198029 CAGAAAACGTGTGTTGAAAATGCATA 59.802 34.615 0.00 0.00 38.62 3.14
2217 5024 8.592105 AAATGTTCATGACAATCACGAAAATT 57.408 26.923 0.00 0.00 37.91 1.82
2223 5030 4.484236 TGACAATCACGAAAATTGGCATC 58.516 39.130 11.74 3.80 45.04 3.91
2245 5071 7.615790 CATCAAGAAAACTTTGTTCAAAGCTC 58.384 34.615 20.65 15.46 33.18 4.09
2253 5079 0.934496 TGTTCAAAGCTCGAACCACG 59.066 50.000 20.43 0.00 41.70 4.94
2254 5080 0.234884 GTTCAAAGCTCGAACCACGG 59.765 55.000 15.00 0.00 42.82 4.94
2255 5081 0.179067 TTCAAAGCTCGAACCACGGT 60.179 50.000 0.00 0.00 42.82 4.83
2257 5083 0.788391 CAAAGCTCGAACCACGGTAC 59.212 55.000 0.00 0.00 42.82 3.34
2258 5084 0.320160 AAAGCTCGAACCACGGTACC 60.320 55.000 0.16 0.16 42.82 3.34
2260 5086 1.445582 GCTCGAACCACGGTACCTG 60.446 63.158 10.90 7.32 42.82 4.00
2276 5107 1.412343 ACCTGCAAAAACATGACCCAC 59.588 47.619 0.00 0.00 0.00 4.61
2279 5110 0.943835 GCAAAAACATGACCCACGCC 60.944 55.000 0.00 0.00 0.00 5.68
2318 5150 3.760684 GTGCTGATTTCTCACCCAAAGAT 59.239 43.478 0.00 0.00 0.00 2.40
2321 5153 4.338879 CTGATTTCTCACCCAAAGATGGT 58.661 43.478 0.00 0.00 46.01 3.55
2329 5246 5.187186 TCTCACCCAAAGATGGTACTACTTC 59.813 44.000 0.00 0.00 46.01 3.01
2367 5284 7.254852 TGAAGAAAGTTCAACACATAAACCAC 58.745 34.615 0.00 0.00 0.00 4.16
2387 5304 0.162294 CGGGCGTCGAACACTAAAAC 59.838 55.000 0.00 0.00 42.43 2.43
2391 5308 3.120889 GGGCGTCGAACACTAAAACTAAC 60.121 47.826 0.00 0.00 0.00 2.34
2392 5309 3.120889 GGCGTCGAACACTAAAACTAACC 60.121 47.826 0.00 0.00 0.00 2.85
2402 5319 9.152595 GAACACTAAAACTAACCTATTCCTCTG 57.847 37.037 0.00 0.00 0.00 3.35
2424 5342 3.317150 CTGTCAAACACGCTATCACAGA 58.683 45.455 0.00 0.00 33.10 3.41
2427 5345 3.493129 GTCAAACACGCTATCACAGACAA 59.507 43.478 0.00 0.00 0.00 3.18
2442 5360 2.088423 AGACAAACGTCACTTGGCAAA 58.912 42.857 7.05 0.00 33.96 3.68
2482 5412 3.250762 GCACACAAAGCAATCAGTGAGTA 59.749 43.478 0.00 0.00 35.97 2.59
2483 5413 4.083110 GCACACAAAGCAATCAGTGAGTAT 60.083 41.667 0.00 0.00 35.97 2.12
2484 5414 5.122239 GCACACAAAGCAATCAGTGAGTATA 59.878 40.000 0.00 0.00 35.97 1.47
2485 5415 6.183360 GCACACAAAGCAATCAGTGAGTATAT 60.183 38.462 0.00 0.00 35.97 0.86
2486 5416 7.011389 GCACACAAAGCAATCAGTGAGTATATA 59.989 37.037 0.00 0.00 35.97 0.86
2487 5417 8.882736 CACACAAAGCAATCAGTGAGTATATAA 58.117 33.333 0.00 0.00 35.97 0.98
2516 5448 0.251341 AAAGCTCATTTCCCGCACCT 60.251 50.000 0.00 0.00 0.00 4.00
2517 5449 0.251341 AAGCTCATTTCCCGCACCTT 60.251 50.000 0.00 0.00 0.00 3.50
2518 5450 0.962356 AGCTCATTTCCCGCACCTTG 60.962 55.000 0.00 0.00 0.00 3.61
2519 5451 1.937546 GCTCATTTCCCGCACCTTGG 61.938 60.000 0.00 0.00 0.00 3.61
2522 5454 0.679640 CATTTCCCGCACCTTGGCTA 60.680 55.000 0.00 0.00 0.00 3.93
2523 5455 0.039035 ATTTCCCGCACCTTGGCTAA 59.961 50.000 0.00 0.00 0.00 3.09
2524 5456 0.891904 TTTCCCGCACCTTGGCTAAC 60.892 55.000 0.00 0.00 0.00 2.34
2525 5457 2.750237 CCCGCACCTTGGCTAACC 60.750 66.667 0.00 0.00 0.00 2.85
2538 5470 4.409718 TGGCTAACCATAAACGCTATCA 57.590 40.909 0.00 0.00 42.67 2.15
2539 5471 4.124238 TGGCTAACCATAAACGCTATCAC 58.876 43.478 0.00 0.00 42.67 3.06
2540 5472 4.124238 GGCTAACCATAAACGCTATCACA 58.876 43.478 0.00 0.00 35.26 3.58
2541 5473 4.211374 GGCTAACCATAAACGCTATCACAG 59.789 45.833 0.00 0.00 35.26 3.66
2542 5474 5.047847 GCTAACCATAAACGCTATCACAGA 58.952 41.667 0.00 0.00 0.00 3.41
2543 5475 5.050972 GCTAACCATAAACGCTATCACAGAC 60.051 44.000 0.00 0.00 0.00 3.51
2544 5476 4.465632 ACCATAAACGCTATCACAGACA 57.534 40.909 0.00 0.00 0.00 3.41
2545 5477 4.827692 ACCATAAACGCTATCACAGACAA 58.172 39.130 0.00 0.00 0.00 3.18
2546 5478 5.242434 ACCATAAACGCTATCACAGACAAA 58.758 37.500 0.00 0.00 0.00 2.83
2547 5479 5.121768 ACCATAAACGCTATCACAGACAAAC 59.878 40.000 0.00 0.00 0.00 2.93
2548 5480 3.788434 AAACGCTATCACAGACAAACG 57.212 42.857 0.00 0.00 0.00 3.60
2549 5481 2.433868 ACGCTATCACAGACAAACGT 57.566 45.000 0.00 0.00 0.00 3.99
2550 5482 2.325761 ACGCTATCACAGACAAACGTC 58.674 47.619 0.00 0.00 0.00 4.34
2551 5483 2.287970 ACGCTATCACAGACAAACGTCA 60.288 45.455 0.00 0.00 35.75 4.35
2552 5484 2.090658 CGCTATCACAGACAAACGTCAC 59.909 50.000 0.00 0.00 35.75 3.67
2553 5485 3.318017 GCTATCACAGACAAACGTCACT 58.682 45.455 0.00 0.00 35.75 3.41
2554 5486 3.741344 GCTATCACAGACAAACGTCACTT 59.259 43.478 0.00 0.00 35.75 3.16
2555 5487 4.376413 GCTATCACAGACAAACGTCACTTG 60.376 45.833 0.00 0.00 35.75 3.16
2556 5488 2.276201 TCACAGACAAACGTCACTTGG 58.724 47.619 3.69 0.00 35.75 3.61
2557 5489 1.014352 ACAGACAAACGTCACTTGGC 58.986 50.000 3.69 0.00 35.75 4.52
2558 5490 1.013596 CAGACAAACGTCACTTGGCA 58.986 50.000 7.05 0.00 33.96 4.92
2559 5491 1.400142 CAGACAAACGTCACTTGGCAA 59.600 47.619 7.05 0.00 33.96 4.52
2560 5492 2.088423 AGACAAACGTCACTTGGCAAA 58.912 42.857 7.05 0.00 33.96 3.68
2561 5493 2.159435 AGACAAACGTCACTTGGCAAAC 60.159 45.455 7.05 0.00 33.96 2.93
2562 5494 1.542030 ACAAACGTCACTTGGCAAACA 59.458 42.857 0.00 0.00 0.00 2.83
2563 5495 1.917303 CAAACGTCACTTGGCAAACAC 59.083 47.619 0.00 0.00 0.00 3.32
2564 5496 0.098025 AACGTCACTTGGCAAACACG 59.902 50.000 18.41 18.41 0.00 4.49
2565 5497 1.654137 CGTCACTTGGCAAACACGC 60.654 57.895 0.00 0.00 0.00 5.34
2566 5498 1.727467 GTCACTTGGCAAACACGCT 59.273 52.632 0.00 0.00 0.00 5.07
2567 5499 0.941542 GTCACTTGGCAAACACGCTA 59.058 50.000 0.00 0.00 0.00 4.26
2568 5500 1.535462 GTCACTTGGCAAACACGCTAT 59.465 47.619 0.00 0.00 0.00 2.97
2569 5501 1.804151 TCACTTGGCAAACACGCTATC 59.196 47.619 0.00 0.00 0.00 2.08
2570 5502 1.535028 CACTTGGCAAACACGCTATCA 59.465 47.619 0.00 0.00 0.00 2.15
2589 5521 6.861572 GCTATCACTGGTTCAAACTAAAAACC 59.138 38.462 0.00 0.00 42.28 3.27
2620 5570 9.906660 AAACACGTCACATTTCATAACATATTT 57.093 25.926 0.00 0.00 0.00 1.40
2629 5579 9.656040 ACATTTCATAACATATTTTGCATGTGT 57.344 25.926 0.00 0.00 36.74 3.72
2730 5683 8.024145 ACACAAATAAAAATAACAAGTGGGGA 57.976 30.769 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.426023 GGTTGGAGTGGTCACGCT 59.574 61.111 4.97 0.00 40.91 5.07
6 7 2.668550 GGGTTGGAGTGGTCACGC 60.669 66.667 0.00 0.00 36.20 5.34
7 8 0.602905 GAAGGGTTGGAGTGGTCACG 60.603 60.000 0.00 0.00 36.20 4.35
8 9 0.472471 TGAAGGGTTGGAGTGGTCAC 59.528 55.000 0.00 0.00 0.00 3.67
9 10 0.764890 CTGAAGGGTTGGAGTGGTCA 59.235 55.000 0.00 0.00 0.00 4.02
10 11 0.765510 ACTGAAGGGTTGGAGTGGTC 59.234 55.000 0.00 0.00 0.00 4.02
11 12 0.765510 GACTGAAGGGTTGGAGTGGT 59.234 55.000 0.00 0.00 0.00 4.16
12 13 0.036875 GGACTGAAGGGTTGGAGTGG 59.963 60.000 0.00 0.00 0.00 4.00
13 14 1.059913 AGGACTGAAGGGTTGGAGTG 58.940 55.000 0.00 0.00 0.00 3.51
14 15 1.821088 AAGGACTGAAGGGTTGGAGT 58.179 50.000 0.00 0.00 0.00 3.85
15 16 2.959465 AAAGGACTGAAGGGTTGGAG 57.041 50.000 0.00 0.00 0.00 3.86
16 17 5.333566 AATAAAAGGACTGAAGGGTTGGA 57.666 39.130 0.00 0.00 0.00 3.53
17 18 6.419484 AAAATAAAAGGACTGAAGGGTTGG 57.581 37.500 0.00 0.00 0.00 3.77
18 19 6.705825 CCAAAAATAAAAGGACTGAAGGGTTG 59.294 38.462 0.00 0.00 0.00 3.77
19 20 6.687901 GCCAAAAATAAAAGGACTGAAGGGTT 60.688 38.462 0.00 0.00 0.00 4.11
20 21 5.221641 GCCAAAAATAAAAGGACTGAAGGGT 60.222 40.000 0.00 0.00 0.00 4.34
21 22 5.237815 GCCAAAAATAAAAGGACTGAAGGG 58.762 41.667 0.00 0.00 0.00 3.95
22 23 4.923281 CGCCAAAAATAAAAGGACTGAAGG 59.077 41.667 0.00 0.00 0.00 3.46
23 24 4.923281 CCGCCAAAAATAAAAGGACTGAAG 59.077 41.667 0.00 0.00 0.00 3.02
24 25 4.262249 CCCGCCAAAAATAAAAGGACTGAA 60.262 41.667 0.00 0.00 0.00 3.02
25 26 3.257127 CCCGCCAAAAATAAAAGGACTGA 59.743 43.478 0.00 0.00 0.00 3.41
26 27 3.257127 TCCCGCCAAAAATAAAAGGACTG 59.743 43.478 0.00 0.00 0.00 3.51
27 28 3.502356 TCCCGCCAAAAATAAAAGGACT 58.498 40.909 0.00 0.00 0.00 3.85
28 29 3.945981 TCCCGCCAAAAATAAAAGGAC 57.054 42.857 0.00 0.00 0.00 3.85
29 30 3.449377 GGATCCCGCCAAAAATAAAAGGA 59.551 43.478 0.00 0.00 0.00 3.36
30 31 3.196685 TGGATCCCGCCAAAAATAAAAGG 59.803 43.478 9.90 0.00 34.31 3.11
31 32 4.464069 TGGATCCCGCCAAAAATAAAAG 57.536 40.909 9.90 0.00 34.31 2.27
32 33 4.891992 TTGGATCCCGCCAAAAATAAAA 57.108 36.364 9.90 0.00 44.55 1.52
46 47 1.290134 AGGACTGAAGGGTTGGATCC 58.710 55.000 4.20 4.20 0.00 3.36
47 48 2.040412 ACAAGGACTGAAGGGTTGGATC 59.960 50.000 0.00 0.00 0.00 3.36
48 49 2.065799 ACAAGGACTGAAGGGTTGGAT 58.934 47.619 0.00 0.00 0.00 3.41
49 50 1.518367 ACAAGGACTGAAGGGTTGGA 58.482 50.000 0.00 0.00 0.00 3.53
50 51 2.372172 ACTACAAGGACTGAAGGGTTGG 59.628 50.000 0.00 0.00 0.00 3.77
51 52 3.771577 ACTACAAGGACTGAAGGGTTG 57.228 47.619 0.00 0.00 0.00 3.77
52 53 3.581770 GGTACTACAAGGACTGAAGGGTT 59.418 47.826 0.00 0.00 0.00 4.11
53 54 3.171528 GGTACTACAAGGACTGAAGGGT 58.828 50.000 0.00 0.00 0.00 4.34
54 55 3.170717 TGGTACTACAAGGACTGAAGGG 58.829 50.000 0.00 0.00 0.00 3.95
55 56 4.822026 CTTGGTACTACAAGGACTGAAGG 58.178 47.826 4.45 0.00 43.14 3.46
65 66 6.322201 GGGCACTACTATACTTGGTACTACAA 59.678 42.308 0.00 0.00 0.00 2.41
66 67 5.829924 GGGCACTACTATACTTGGTACTACA 59.170 44.000 0.00 0.00 0.00 2.74
67 68 5.829924 TGGGCACTACTATACTTGGTACTAC 59.170 44.000 0.00 0.00 0.00 2.73
68 69 6.017211 TGGGCACTACTATACTTGGTACTA 57.983 41.667 0.00 0.00 0.00 1.82
69 70 4.875389 TGGGCACTACTATACTTGGTACT 58.125 43.478 0.00 0.00 0.00 2.73
70 71 4.648307 ACTGGGCACTACTATACTTGGTAC 59.352 45.833 0.00 0.00 0.00 3.34
71 72 4.875389 ACTGGGCACTACTATACTTGGTA 58.125 43.478 0.00 0.00 0.00 3.25
72 73 3.721021 ACTGGGCACTACTATACTTGGT 58.279 45.455 0.00 0.00 0.00 3.67
73 74 5.864418 TTACTGGGCACTACTATACTTGG 57.136 43.478 0.00 0.00 0.00 3.61
74 75 9.998106 ATAATTTACTGGGCACTACTATACTTG 57.002 33.333 0.00 0.00 0.00 3.16
80 81 9.430399 ACTCTTATAATTTACTGGGCACTACTA 57.570 33.333 0.00 0.00 0.00 1.82
81 82 8.320338 ACTCTTATAATTTACTGGGCACTACT 57.680 34.615 0.00 0.00 0.00 2.57
82 83 9.694137 CTACTCTTATAATTTACTGGGCACTAC 57.306 37.037 0.00 0.00 0.00 2.73
83 84 9.650714 TCTACTCTTATAATTTACTGGGCACTA 57.349 33.333 0.00 0.00 0.00 2.74
84 85 8.548880 TCTACTCTTATAATTTACTGGGCACT 57.451 34.615 0.00 0.00 0.00 4.40
85 86 9.780186 AATCTACTCTTATAATTTACTGGGCAC 57.220 33.333 0.00 0.00 0.00 5.01
119 120 9.846248 GTTAAGACATTCTTGCAAAGTGATATT 57.154 29.630 0.00 0.00 46.34 1.28
120 121 9.013229 TGTTAAGACATTCTTGCAAAGTGATAT 57.987 29.630 0.00 0.00 46.34 1.63
121 122 8.389779 TGTTAAGACATTCTTGCAAAGTGATA 57.610 30.769 0.00 0.00 46.34 2.15
122 123 7.275888 TGTTAAGACATTCTTGCAAAGTGAT 57.724 32.000 0.00 0.00 46.34 3.06
123 124 6.691754 TGTTAAGACATTCTTGCAAAGTGA 57.308 33.333 0.00 0.00 46.34 3.41
124 125 6.583806 GGATGTTAAGACATTCTTGCAAAGTG 59.416 38.462 0.00 2.19 46.27 3.16
125 126 6.681777 GGATGTTAAGACATTCTTGCAAAGT 58.318 36.000 0.00 0.00 46.27 2.66
137 138 8.915036 GGAGAGTCTATTAAGGATGTTAAGACA 58.085 37.037 0.00 0.00 40.71 3.41
138 139 8.915036 TGGAGAGTCTATTAAGGATGTTAAGAC 58.085 37.037 0.00 0.00 0.00 3.01
139 140 9.661954 ATGGAGAGTCTATTAAGGATGTTAAGA 57.338 33.333 0.00 0.00 0.00 2.10
143 144 9.084533 GACTATGGAGAGTCTATTAAGGATGTT 57.915 37.037 0.00 0.00 42.26 2.71
144 145 8.228206 TGACTATGGAGAGTCTATTAAGGATGT 58.772 37.037 0.00 0.00 45.21 3.06
145 146 8.642935 TGACTATGGAGAGTCTATTAAGGATG 57.357 38.462 0.00 0.00 45.21 3.51
146 147 9.836179 ATTGACTATGGAGAGTCTATTAAGGAT 57.164 33.333 0.00 0.00 45.21 3.24
147 148 9.083422 CATTGACTATGGAGAGTCTATTAAGGA 57.917 37.037 0.00 0.00 45.21 3.36
283 284 9.935682 GCTAACAAATATTGAGATCATTCGAAA 57.064 29.630 0.00 0.00 0.00 3.46
284 285 9.330063 AGCTAACAAATATTGAGATCATTCGAA 57.670 29.630 0.00 0.00 0.00 3.71
285 286 8.893219 AGCTAACAAATATTGAGATCATTCGA 57.107 30.769 0.00 0.00 0.00 3.71
286 287 9.941664 AAAGCTAACAAATATTGAGATCATTCG 57.058 29.630 0.00 0.00 0.00 3.34
314 315 5.223382 ACGCATCGATTCATCCTAACTTAG 58.777 41.667 0.00 0.00 0.00 2.18
326 327 0.726827 TGCAAGGAACGCATCGATTC 59.273 50.000 0.00 0.00 33.55 2.52
328 329 0.673333 TGTGCAAGGAACGCATCGAT 60.673 50.000 0.00 0.00 42.32 3.59
331 332 2.352503 AATTGTGCAAGGAACGCATC 57.647 45.000 0.00 0.00 42.32 3.91
334 335 1.068610 TGCTAATTGTGCAAGGAACGC 60.069 47.619 5.64 0.00 37.51 4.84
336 337 3.253188 TCACTGCTAATTGTGCAAGGAAC 59.747 43.478 8.83 0.00 40.13 3.62
353 360 2.138320 ACTGATGTTTGTCGCTCACTG 58.862 47.619 0.00 0.00 0.00 3.66
359 366 7.061752 AGAAGTTATTACTGATGTTTGTCGC 57.938 36.000 0.00 0.00 34.01 5.19
360 367 9.355215 AGTAGAAGTTATTACTGATGTTTGTCG 57.645 33.333 0.08 0.00 34.01 4.35
370 377 5.593502 ACGGAGGGAGTAGAAGTTATTACTG 59.406 44.000 4.69 0.00 34.01 2.74
379 386 2.421751 TGAGACGGAGGGAGTAGAAG 57.578 55.000 0.00 0.00 0.00 2.85
382 389 8.047911 TCTTATATTATGAGACGGAGGGAGTAG 58.952 40.741 0.00 0.00 0.00 2.57
389 406 5.031578 GCGCTCTTATATTATGAGACGGAG 58.968 45.833 0.00 0.00 34.00 4.63
396 413 7.883229 TCAAAATCGCGCTCTTATATTATGA 57.117 32.000 5.56 0.00 0.00 2.15
403 420 6.363626 CACTAGTATCAAAATCGCGCTCTTAT 59.636 38.462 5.56 0.00 0.00 1.73
405 422 4.504461 CACTAGTATCAAAATCGCGCTCTT 59.496 41.667 5.56 0.00 0.00 2.85
406 423 4.045104 CACTAGTATCAAAATCGCGCTCT 58.955 43.478 5.56 0.00 0.00 4.09
407 424 3.797256 ACACTAGTATCAAAATCGCGCTC 59.203 43.478 5.56 0.00 0.00 5.03
408 425 3.782046 ACACTAGTATCAAAATCGCGCT 58.218 40.909 5.56 0.00 0.00 5.92
409 426 4.738740 ACTACACTAGTATCAAAATCGCGC 59.261 41.667 0.00 0.00 37.23 6.86
411 428 8.624701 TTACACTACACTAGTATCAAAATCGC 57.375 34.615 0.00 0.00 37.23 4.58
434 451 9.550406 CCGTCCCATAATATAAGAGTGTTTTTA 57.450 33.333 0.00 0.00 0.00 1.52
440 457 5.715279 TCCTCCGTCCCATAATATAAGAGTG 59.285 44.000 0.00 0.00 0.00 3.51
441 458 5.900437 TCCTCCGTCCCATAATATAAGAGT 58.100 41.667 0.00 0.00 0.00 3.24
442 459 6.437793 ACTTCCTCCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
448 465 5.070823 ACTACTTCCTCCGTCCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
567 3231 3.055819 TCGGAGGAAAAGAGAGACATTGG 60.056 47.826 0.00 0.00 0.00 3.16
586 3250 1.986378 GACAGACAATCGTGTTCTCGG 59.014 52.381 0.00 0.00 38.41 4.63
631 3300 4.630111 TGCCTATTTTTCTTTGGTTGCAG 58.370 39.130 0.00 0.00 0.00 4.41
670 3339 5.221322 GGCTCCTGTTTGAAACTTTGAATCT 60.221 40.000 9.69 0.00 0.00 2.40
689 3358 5.236695 GGTCTTACAAAGAATAATCGGCTCC 59.763 44.000 0.00 0.00 39.67 4.70
696 3365 8.718734 GTTGTCTTCGGTCTTACAAAGAATAAT 58.281 33.333 0.00 0.00 39.67 1.28
708 3377 2.559668 TCATACGGTTGTCTTCGGTCTT 59.440 45.455 0.00 0.00 0.00 3.01
721 3390 5.692928 AGGAGTGATAGTTAGTCATACGGT 58.307 41.667 0.00 0.00 0.00 4.83
724 3393 5.181622 CCCGAGGAGTGATAGTTAGTCATAC 59.818 48.000 0.00 0.00 0.00 2.39
726 3395 4.145807 CCCGAGGAGTGATAGTTAGTCAT 58.854 47.826 0.00 0.00 0.00 3.06
728 3397 3.315749 CACCCGAGGAGTGATAGTTAGTC 59.684 52.174 5.24 0.00 37.42 2.59
730 3399 2.034812 GCACCCGAGGAGTGATAGTTAG 59.965 54.545 12.71 0.00 37.42 2.34
731 3400 2.029623 GCACCCGAGGAGTGATAGTTA 58.970 52.381 12.71 0.00 37.42 2.24
733 3402 0.324368 TGCACCCGAGGAGTGATAGT 60.324 55.000 12.71 0.00 37.42 2.12
736 3405 1.690219 GGATGCACCCGAGGAGTGAT 61.690 60.000 12.71 5.65 37.42 3.06
737 3406 2.359169 GGATGCACCCGAGGAGTGA 61.359 63.158 12.71 2.12 37.42 3.41
738 3407 2.187946 GGATGCACCCGAGGAGTG 59.812 66.667 0.00 6.44 38.30 3.51
746 3415 4.540735 CGGTACCCGGATGCACCC 62.541 72.222 0.73 0.00 44.15 4.61
756 3425 3.889520 AAACATCTCTTCTCGGTACCC 57.110 47.619 6.25 0.00 0.00 3.69
777 3446 0.103390 TCGCAACTCACACGAGGAAA 59.897 50.000 0.00 0.00 44.17 3.13
778 3447 0.317160 ATCGCAACTCACACGAGGAA 59.683 50.000 0.00 0.00 44.17 3.36
791 3465 2.432206 TCGACTGACTTTGATCGCAA 57.568 45.000 0.00 0.00 34.59 4.85
806 3480 1.719780 GACAGGTTTGACACGATCGAC 59.280 52.381 24.34 12.85 0.00 4.20
807 3481 1.338655 TGACAGGTTTGACACGATCGA 59.661 47.619 24.34 0.00 0.00 3.59
808 3482 1.455786 GTGACAGGTTTGACACGATCG 59.544 52.381 14.88 14.88 39.46 3.69
823 3497 2.811431 CCGCCTAGTTTCATTTGTGACA 59.189 45.455 0.00 0.00 0.00 3.58
836 3510 2.032620 CTATGTGGAGTTCCGCCTAGT 58.967 52.381 9.11 0.00 45.66 2.57
840 3514 2.208527 TCCTATGTGGAGTTCCGCC 58.791 57.895 9.11 0.00 45.66 6.13
851 3528 2.286872 CTGTCCGACGTACTCCTATGT 58.713 52.381 0.00 0.00 0.00 2.29
853 3530 1.134159 AGCTGTCCGACGTACTCCTAT 60.134 52.381 0.00 0.00 0.00 2.57
855 3532 0.608582 AAGCTGTCCGACGTACTCCT 60.609 55.000 0.00 0.00 0.00 3.69
910 3592 3.490439 TGATTCTTGGTGAGTTGCTCA 57.510 42.857 0.00 0.00 38.25 4.26
913 3595 3.366679 CCACATGATTCTTGGTGAGTTGC 60.367 47.826 0.00 0.00 33.16 4.17
947 3629 4.012374 ACTTTGTTCGGTAGAGATCGGTA 58.988 43.478 0.00 0.00 0.00 4.02
957 3639 1.936203 GCGTGCCTACTTTGTTCGGTA 60.936 52.381 0.00 0.00 0.00 4.02
992 3683 2.511600 CGGTTGCCATCGAGGGAC 60.512 66.667 22.53 10.05 37.51 4.46
1594 4285 1.154338 CCGTGTACGTCGTCAGGTC 60.154 63.158 0.00 0.00 37.74 3.85
1763 4454 1.596260 CTAATCAGCTCACATGTGCGG 59.404 52.381 21.38 16.09 39.31 5.69
1795 4486 9.045223 CATCTACGAAAACCATCATCTAATTGA 57.955 33.333 0.00 0.00 0.00 2.57
1816 4591 3.482436 ACCAAAACGGAAGCAACATCTA 58.518 40.909 0.00 0.00 38.63 1.98
1841 4616 1.398041 ACGCGACGTACTAGTGCAATA 59.602 47.619 15.93 0.00 38.73 1.90
1842 4617 0.169672 ACGCGACGTACTAGTGCAAT 59.830 50.000 15.93 0.00 38.73 3.56
1871 4647 4.921515 GTCGAACATACTTACAGCAAGACA 59.078 41.667 0.00 0.00 37.71 3.41
1913 4689 6.303370 AGACAACAATTTTTGTGCGTTTTTC 58.697 32.000 14.46 0.00 44.59 2.29
1941 4717 9.057089 CGCCACCTATTAATTAAGAAGAGAATT 57.943 33.333 3.94 0.00 0.00 2.17
1942 4718 7.173390 GCGCCACCTATTAATTAAGAAGAGAAT 59.827 37.037 0.00 0.00 0.00 2.40
1943 4719 6.482308 GCGCCACCTATTAATTAAGAAGAGAA 59.518 38.462 0.00 0.00 0.00 2.87
1944 4720 5.989777 GCGCCACCTATTAATTAAGAAGAGA 59.010 40.000 0.00 0.00 0.00 3.10
1945 4721 5.758296 TGCGCCACCTATTAATTAAGAAGAG 59.242 40.000 4.18 0.00 0.00 2.85
1962 4738 0.740737 AGCCATAAGATTTGCGCCAC 59.259 50.000 4.18 0.00 0.00 5.01
1963 4739 1.024271 GAGCCATAAGATTTGCGCCA 58.976 50.000 4.18 0.00 0.00 5.69
1965 4741 0.040958 CGGAGCCATAAGATTTGCGC 60.041 55.000 0.00 0.00 0.00 6.09
2045 4822 4.978083 ATTGCTTGCTCCTCTTTGTATG 57.022 40.909 0.00 0.00 0.00 2.39
2051 4828 5.948162 TCATCTTTAATTGCTTGCTCCTCTT 59.052 36.000 0.00 0.00 0.00 2.85
2073 4850 6.988522 TCTGGTACTAAGCGCAAATATATCA 58.011 36.000 11.47 0.64 0.00 2.15
2074 4851 8.383619 CAATCTGGTACTAAGCGCAAATATATC 58.616 37.037 11.47 0.00 0.00 1.63
2075 4852 8.094548 TCAATCTGGTACTAAGCGCAAATATAT 58.905 33.333 11.47 0.00 0.00 0.86
2076 4853 7.438564 TCAATCTGGTACTAAGCGCAAATATA 58.561 34.615 11.47 0.00 0.00 0.86
2077 4854 6.288294 TCAATCTGGTACTAAGCGCAAATAT 58.712 36.000 11.47 0.00 0.00 1.28
2078 4855 5.666462 TCAATCTGGTACTAAGCGCAAATA 58.334 37.500 11.47 0.00 0.00 1.40
2079 4856 4.513442 TCAATCTGGTACTAAGCGCAAAT 58.487 39.130 11.47 0.00 0.00 2.32
2080 4857 3.932822 TCAATCTGGTACTAAGCGCAAA 58.067 40.909 11.47 0.00 0.00 3.68
2088 4865 6.128486 TGGTACGGTAATCAATCTGGTACTA 58.872 40.000 0.00 0.00 0.00 1.82
2112 4889 6.534634 AGTTGCTGTAATCACTAGAAAACCT 58.465 36.000 0.00 0.00 0.00 3.50
2122 4899 2.343101 TGGCGTAGTTGCTGTAATCAC 58.657 47.619 0.00 0.00 34.52 3.06
2147 4924 4.489810 TGCATTTTCAACACACGTTTTCT 58.510 34.783 0.00 0.00 31.13 2.52
2171 4978 9.039165 ACATTTTTGTCAGGGATATTTCTGATT 57.961 29.630 10.72 0.00 41.36 2.57
2217 5024 5.336150 TGAACAAAGTTTTCTTGATGCCA 57.664 34.783 0.00 0.00 40.37 4.92
2245 5071 0.881159 TTTGCAGGTACCGTGGTTCG 60.881 55.000 6.18 0.00 39.52 3.95
2253 5079 2.029380 GGGTCATGTTTTTGCAGGTACC 60.029 50.000 2.73 2.73 0.00 3.34
2254 5080 2.625790 TGGGTCATGTTTTTGCAGGTAC 59.374 45.455 0.00 0.00 0.00 3.34
2255 5081 2.625790 GTGGGTCATGTTTTTGCAGGTA 59.374 45.455 0.00 0.00 0.00 3.08
2257 5083 1.602668 CGTGGGTCATGTTTTTGCAGG 60.603 52.381 0.00 0.00 0.00 4.85
2258 5084 1.769733 CGTGGGTCATGTTTTTGCAG 58.230 50.000 0.00 0.00 0.00 4.41
2260 5086 0.943835 GGCGTGGGTCATGTTTTTGC 60.944 55.000 0.00 0.00 0.00 3.68
2276 5107 3.845775 CACGAAGTAAATTGATTGTGGCG 59.154 43.478 0.00 0.00 41.61 5.69
2279 5110 5.688823 TCAGCACGAAGTAAATTGATTGTG 58.311 37.500 0.00 0.00 41.61 3.33
2318 5150 8.970020 TCAAAATATCTTACCGAAGTAGTACCA 58.030 33.333 0.00 0.00 34.03 3.25
2367 5284 0.945265 TTTTAGTGTTCGACGCCCGG 60.945 55.000 0.00 0.00 39.14 5.73
2387 5304 5.344743 TTGACAGCAGAGGAATAGGTTAG 57.655 43.478 0.00 0.00 0.00 2.34
2391 5308 3.686726 GTGTTTGACAGCAGAGGAATAGG 59.313 47.826 0.00 0.00 0.00 2.57
2392 5309 3.369147 CGTGTTTGACAGCAGAGGAATAG 59.631 47.826 0.00 0.00 0.00 1.73
2402 5319 1.798223 TGTGATAGCGTGTTTGACAGC 59.202 47.619 0.00 0.00 0.00 4.40
2424 5342 3.378742 TGTATTTGCCAAGTGACGTTTGT 59.621 39.130 0.00 0.00 0.00 2.83
2427 5345 3.211045 ACTGTATTTGCCAAGTGACGTT 58.789 40.909 0.00 0.00 0.00 3.99
2442 5360 8.615878 TTGTGTGCTTCTTAACATTACTGTAT 57.384 30.769 0.00 0.00 33.36 2.29
2501 5433 1.937546 GCCAAGGTGCGGGAAATGAG 61.938 60.000 0.00 0.00 0.00 2.90
2518 5450 4.124238 TGTGATAGCGTTTATGGTTAGCC 58.876 43.478 0.00 0.00 0.00 3.93
2519 5451 5.047847 TCTGTGATAGCGTTTATGGTTAGC 58.952 41.667 0.00 0.00 0.00 3.09
2522 5454 4.827692 TGTCTGTGATAGCGTTTATGGTT 58.172 39.130 0.00 0.00 0.00 3.67
2523 5455 4.465632 TGTCTGTGATAGCGTTTATGGT 57.534 40.909 0.00 0.00 0.00 3.55
2524 5456 5.560148 GTTTGTCTGTGATAGCGTTTATGG 58.440 41.667 0.00 0.00 0.00 2.74
2525 5457 5.163992 ACGTTTGTCTGTGATAGCGTTTATG 60.164 40.000 0.00 0.00 0.00 1.90
2526 5458 4.927425 ACGTTTGTCTGTGATAGCGTTTAT 59.073 37.500 0.00 0.00 0.00 1.40
2527 5459 4.300803 ACGTTTGTCTGTGATAGCGTTTA 58.699 39.130 0.00 0.00 0.00 2.01
2528 5460 3.128349 ACGTTTGTCTGTGATAGCGTTT 58.872 40.909 0.00 0.00 0.00 3.60
2529 5461 2.729882 GACGTTTGTCTGTGATAGCGTT 59.270 45.455 0.00 0.00 42.08 4.84
2530 5462 2.287970 TGACGTTTGTCTGTGATAGCGT 60.288 45.455 0.00 0.00 45.70 5.07
2531 5463 2.090658 GTGACGTTTGTCTGTGATAGCG 59.909 50.000 0.00 0.00 45.70 4.26
2532 5464 3.318017 AGTGACGTTTGTCTGTGATAGC 58.682 45.455 0.00 0.00 45.70 2.97
2533 5465 4.150627 CCAAGTGACGTTTGTCTGTGATAG 59.849 45.833 0.00 0.00 45.70 2.08
2534 5466 4.055360 CCAAGTGACGTTTGTCTGTGATA 58.945 43.478 0.00 0.00 45.70 2.15
2535 5467 2.872245 CCAAGTGACGTTTGTCTGTGAT 59.128 45.455 0.00 0.00 45.70 3.06
2536 5468 2.276201 CCAAGTGACGTTTGTCTGTGA 58.724 47.619 0.00 0.00 45.70 3.58
2537 5469 1.268032 GCCAAGTGACGTTTGTCTGTG 60.268 52.381 0.00 0.00 45.70 3.66
2538 5470 1.014352 GCCAAGTGACGTTTGTCTGT 58.986 50.000 0.00 0.00 45.70 3.41
2539 5471 1.013596 TGCCAAGTGACGTTTGTCTG 58.986 50.000 0.00 0.00 45.70 3.51
2540 5472 1.745232 TTGCCAAGTGACGTTTGTCT 58.255 45.000 0.00 0.00 45.70 3.41
2541 5473 2.182014 GTTTGCCAAGTGACGTTTGTC 58.818 47.619 0.00 0.00 45.71 3.18
2542 5474 1.542030 TGTTTGCCAAGTGACGTTTGT 59.458 42.857 0.00 0.00 0.00 2.83
2543 5475 1.917303 GTGTTTGCCAAGTGACGTTTG 59.083 47.619 0.00 0.00 0.00 2.93
2544 5476 1.466697 CGTGTTTGCCAAGTGACGTTT 60.467 47.619 0.00 0.00 0.00 3.60
2545 5477 0.098025 CGTGTTTGCCAAGTGACGTT 59.902 50.000 0.00 0.00 0.00 3.99
2546 5478 1.719117 CGTGTTTGCCAAGTGACGT 59.281 52.632 0.00 0.00 0.00 4.34
2547 5479 1.654137 GCGTGTTTGCCAAGTGACG 60.654 57.895 0.00 0.00 0.00 4.35
2548 5480 0.941542 TAGCGTGTTTGCCAAGTGAC 59.058 50.000 0.00 0.00 34.65 3.67
2549 5481 1.804151 GATAGCGTGTTTGCCAAGTGA 59.196 47.619 0.00 0.00 34.65 3.41
2550 5482 1.535028 TGATAGCGTGTTTGCCAAGTG 59.465 47.619 0.00 0.00 34.65 3.16
2551 5483 1.535462 GTGATAGCGTGTTTGCCAAGT 59.465 47.619 0.00 0.00 34.65 3.16
2552 5484 1.806542 AGTGATAGCGTGTTTGCCAAG 59.193 47.619 0.00 0.00 34.65 3.61
2553 5485 1.535028 CAGTGATAGCGTGTTTGCCAA 59.465 47.619 0.00 0.00 34.65 4.52
2554 5486 1.155889 CAGTGATAGCGTGTTTGCCA 58.844 50.000 0.00 0.00 34.65 4.92
2555 5487 0.447801 CCAGTGATAGCGTGTTTGCC 59.552 55.000 0.00 0.00 34.65 4.52
2556 5488 1.156736 ACCAGTGATAGCGTGTTTGC 58.843 50.000 0.00 0.00 0.00 3.68
2557 5489 2.805671 TGAACCAGTGATAGCGTGTTTG 59.194 45.455 0.00 0.00 0.00 2.93
2558 5490 3.120321 TGAACCAGTGATAGCGTGTTT 57.880 42.857 0.00 0.00 0.00 2.83
2559 5491 2.831685 TGAACCAGTGATAGCGTGTT 57.168 45.000 0.00 0.00 0.00 3.32
2560 5492 2.806244 GTTTGAACCAGTGATAGCGTGT 59.194 45.455 0.00 0.00 0.00 4.49
2561 5493 3.067106 AGTTTGAACCAGTGATAGCGTG 58.933 45.455 0.00 0.00 0.00 5.34
2562 5494 3.402628 AGTTTGAACCAGTGATAGCGT 57.597 42.857 0.00 0.00 0.00 5.07
2563 5495 5.856126 TTTAGTTTGAACCAGTGATAGCG 57.144 39.130 0.00 0.00 0.00 4.26
2564 5496 6.861572 GGTTTTTAGTTTGAACCAGTGATAGC 59.138 38.462 0.00 0.00 41.86 2.97
2565 5497 7.936584 TGGTTTTTAGTTTGAACCAGTGATAG 58.063 34.615 3.24 0.00 45.69 2.08
2566 5498 7.883391 TGGTTTTTAGTTTGAACCAGTGATA 57.117 32.000 3.24 0.00 45.69 2.15
2567 5499 6.783708 TGGTTTTTAGTTTGAACCAGTGAT 57.216 33.333 3.24 0.00 45.69 3.06
2589 5521 7.430793 TGTTATGAAATGTGACGTGTTTCTTTG 59.569 33.333 0.00 0.00 33.99 2.77
2620 5570 2.232208 TGAACACCAACAACACATGCAA 59.768 40.909 0.00 0.00 0.00 4.08
2704 5657 9.144298 TCCCCACTTGTTATTTTTATTTGTGTA 57.856 29.630 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.