Multiple sequence alignment - TraesCS1B01G361100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G361100 chr1B 100.000 1810 0 0 1 1810 589707699 589705890 0.000000e+00 3343.0
1 TraesCS1B01G361100 chr1B 100.000 483 0 0 1977 2459 589705723 589705241 0.000000e+00 893.0
2 TraesCS1B01G361100 chr6A 87.842 987 78 14 704 1671 12227069 12228032 0.000000e+00 1120.0
3 TraesCS1B01G361100 chr6A 78.824 340 53 12 1234 1558 12211574 12211909 6.890000e-51 211.0
4 TraesCS1B01G361100 chr6A 89.916 119 12 0 556 674 14132276 14132394 1.180000e-33 154.0
5 TraesCS1B01G361100 chr6A 88.235 119 14 0 556 674 109777738 109777856 2.550000e-30 143.0
6 TraesCS1B01G361100 chr6A 85.600 125 8 6 1052 1176 12139684 12139798 3.320000e-24 122.0
7 TraesCS1B01G361100 chr6A 97.872 47 0 1 1761 1807 64267257 64267302 2.030000e-11 80.5
8 TraesCS1B01G361100 chr6B 86.992 861 71 14 758 1594 19450995 19450152 0.000000e+00 931.0
9 TraesCS1B01G361100 chr6B 96.763 556 17 1 1 555 531517910 531518465 0.000000e+00 926.0
10 TraesCS1B01G361100 chr6B 90.341 528 41 3 704 1229 19983885 19984404 0.000000e+00 684.0
11 TraesCS1B01G361100 chr6B 89.438 445 46 1 2015 2459 558781699 558781256 5.940000e-156 560.0
12 TraesCS1B01G361100 chr6B 89.213 445 47 1 2015 2459 558864420 558863977 2.760000e-154 555.0
13 TraesCS1B01G361100 chr6B 88.169 355 33 3 1234 1579 19984438 19984792 4.890000e-112 414.0
14 TraesCS1B01G361100 chr6B 85.957 235 11 7 1596 1808 19985520 19985754 5.290000e-57 231.0
15 TraesCS1B01G361100 chr6B 91.824 159 11 2 1596 1752 19450091 19449933 1.140000e-53 220.0
16 TraesCS1B01G361100 chr6B 88.535 157 17 1 1597 1752 19984859 19985015 3.230000e-44 189.0
17 TraesCS1B01G361100 chr6B 94.737 114 6 0 585 698 19451291 19451178 6.990000e-41 178.0
18 TraesCS1B01G361100 chr6B 78.846 104 18 3 1447 1546 19952846 19952949 1.580000e-07 67.6
19 TraesCS1B01G361100 chr6B 95.349 43 1 1 1760 1802 120659836 120659877 1.580000e-07 67.6
20 TraesCS1B01G361100 chr2B 96.774 558 17 1 1 557 739856598 739857155 0.000000e+00 929.0
21 TraesCS1B01G361100 chr2B 96.403 556 18 2 1 555 738271952 738272506 0.000000e+00 915.0
22 TraesCS1B01G361100 chr2B 96.078 561 20 2 1 560 131336858 131336299 0.000000e+00 913.0
23 TraesCS1B01G361100 chr4B 96.763 556 18 0 1 556 611871280 611870725 0.000000e+00 928.0
24 TraesCS1B01G361100 chr4B 91.453 117 10 0 556 672 156529707 156529823 7.040000e-36 161.0
25 TraesCS1B01G361100 chr3B 96.583 556 18 1 1 555 612342089 612341534 0.000000e+00 920.0
26 TraesCS1B01G361100 chr3B 96.403 556 18 2 1 555 674369220 674368666 0.000000e+00 915.0
27 TraesCS1B01G361100 chr3B 90.787 445 31 7 2015 2459 723662862 723662428 9.800000e-164 586.0
28 TraesCS1B01G361100 chr3B 90.598 117 11 0 556 672 386977480 386977596 3.270000e-34 156.0
29 TraesCS1B01G361100 chr7B 96.409 557 19 1 1 556 201471114 201471670 0.000000e+00 917.0
30 TraesCS1B01G361100 chr7B 88.793 116 12 1 553 668 721315148 721315034 9.170000e-30 141.0
31 TraesCS1B01G361100 chr5B 96.403 556 19 1 1 555 466045017 466045572 0.000000e+00 915.0
32 TraesCS1B01G361100 chrUn 86.423 847 79 15 758 1594 385849814 385848994 0.000000e+00 894.0
33 TraesCS1B01G361100 chrUn 92.360 445 33 1 2015 2459 71102425 71102868 1.240000e-177 632.0
34 TraesCS1B01G361100 chrUn 92.360 445 33 1 2015 2459 281490886 281490443 1.240000e-177 632.0
35 TraesCS1B01G361100 chrUn 89.681 407 27 9 2053 2459 300902811 300902420 2.820000e-139 505.0
36 TraesCS1B01G361100 chrUn 85.470 234 12 8 1596 1807 385848934 385848701 8.850000e-55 224.0
37 TraesCS1B01G361100 chrUn 91.870 123 10 0 576 698 385850134 385850012 3.250000e-39 172.0
38 TraesCS1B01G361100 chrUn 88.430 121 7 5 554 674 70550623 70550510 3.300000e-29 139.0
39 TraesCS1B01G361100 chrUn 79.808 104 17 3 1447 1546 237794431 237794534 3.390000e-09 73.1
40 TraesCS1B01G361100 chrUn 86.441 59 4 2 1743 1800 79346885 79346830 7.340000e-06 62.1
41 TraesCS1B01G361100 chr6D 90.667 675 41 8 929 1589 10670850 10671516 0.000000e+00 878.0
42 TraesCS1B01G361100 chr6D 77.320 485 54 30 1052 1496 10666736 10667204 4.090000e-58 235.0
43 TraesCS1B01G361100 chr6D 92.424 66 3 2 1744 1808 43646670 43646606 2.600000e-15 93.5
44 TraesCS1B01G361100 chr6D 92.857 56 1 3 1752 1807 50754948 50754896 7.290000e-11 78.7
45 TraesCS1B01G361100 chr2D 87.359 443 52 4 2015 2456 495397935 495398374 2.820000e-139 505.0
46 TraesCS1B01G361100 chr7A 93.082 318 21 1 2015 2332 51661236 51660920 4.790000e-127 464.0
47 TraesCS1B01G361100 chr3D 91.892 333 26 1 2127 2459 4858185 4857854 4.790000e-127 464.0
48 TraesCS1B01G361100 chr7D 93.939 99 6 0 576 674 220506786 220506884 1.520000e-32 150.0
49 TraesCS1B01G361100 chr4A 95.312 64 2 1 1745 1807 736265872 736265935 1.560000e-17 100.0
50 TraesCS1B01G361100 chr5D 91.045 67 4 2 1743 1808 6051856 6051791 3.370000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G361100 chr1B 589705241 589707699 2458 True 2118.0 3343 100.000000 1 2459 2 chr1B.!!$R1 2458
1 TraesCS1B01G361100 chr6A 12227069 12228032 963 False 1120.0 1120 87.842000 704 1671 1 chr6A.!!$F3 967
2 TraesCS1B01G361100 chr6B 531517910 531518465 555 False 926.0 926 96.763000 1 555 1 chr6B.!!$F3 554
3 TraesCS1B01G361100 chr6B 19449933 19451291 1358 True 443.0 931 91.184333 585 1752 3 chr6B.!!$R3 1167
4 TraesCS1B01G361100 chr6B 19983885 19985754 1869 False 379.5 684 88.250500 704 1808 4 chr6B.!!$F4 1104
5 TraesCS1B01G361100 chr2B 739856598 739857155 557 False 929.0 929 96.774000 1 557 1 chr2B.!!$F2 556
6 TraesCS1B01G361100 chr2B 738271952 738272506 554 False 915.0 915 96.403000 1 555 1 chr2B.!!$F1 554
7 TraesCS1B01G361100 chr2B 131336299 131336858 559 True 913.0 913 96.078000 1 560 1 chr2B.!!$R1 559
8 TraesCS1B01G361100 chr4B 611870725 611871280 555 True 928.0 928 96.763000 1 556 1 chr4B.!!$R1 555
9 TraesCS1B01G361100 chr3B 612341534 612342089 555 True 920.0 920 96.583000 1 555 1 chr3B.!!$R1 554
10 TraesCS1B01G361100 chr3B 674368666 674369220 554 True 915.0 915 96.403000 1 555 1 chr3B.!!$R2 554
11 TraesCS1B01G361100 chr7B 201471114 201471670 556 False 917.0 917 96.409000 1 556 1 chr7B.!!$F1 555
12 TraesCS1B01G361100 chr5B 466045017 466045572 555 False 915.0 915 96.403000 1 555 1 chr5B.!!$F1 554
13 TraesCS1B01G361100 chrUn 385848701 385850134 1433 True 430.0 894 87.921000 576 1807 3 chrUn.!!$R5 1231
14 TraesCS1B01G361100 chr6D 10666736 10671516 4780 False 556.5 878 83.993500 929 1589 2 chr6D.!!$F1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 387 0.320697 GTTCGCACCCCTGTAACTCT 59.679 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 6057 0.032403 TCGTGGTCAACAACGTAGGG 59.968 55.0 9.71 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
386 387 0.320697 GTTCGCACCCCTGTAACTCT 59.679 55.000 0.00 0.00 0.00 3.24
505 506 5.772672 ACAACTACTCCATAGCTAGGATCTG 59.227 44.000 7.04 0.00 33.99 2.90
514 515 1.531739 GCTAGGATCTGGCCTCTCCG 61.532 65.000 3.32 0.00 39.50 4.63
524 526 1.229643 GCCTCTCCGTACCTACCCT 59.770 63.158 0.00 0.00 0.00 4.34
540 542 5.144100 CCTACCCTCATTCTACTGTCAGAT 58.856 45.833 6.91 0.00 0.00 2.90
557 559 2.673368 CAGATTTAGAACCACGACAGGC 59.327 50.000 0.00 0.00 0.00 4.85
559 561 2.922740 TTTAGAACCACGACAGGCTT 57.077 45.000 0.00 0.00 0.00 4.35
560 562 2.922740 TTAGAACCACGACAGGCTTT 57.077 45.000 0.00 0.00 0.00 3.51
561 563 2.163818 TAGAACCACGACAGGCTTTG 57.836 50.000 0.00 0.00 0.00 2.77
562 564 1.166531 AGAACCACGACAGGCTTTGC 61.167 55.000 0.00 0.00 0.00 3.68
607 609 2.730524 GCAGGAGAGGTGGGAGAGC 61.731 68.421 0.00 0.00 0.00 4.09
636 638 4.338710 TTGGCGGCGCTAGGGTTT 62.339 61.111 32.30 0.00 0.00 3.27
678 680 2.358300 GGCGATCCAGGGGAGAGATATA 60.358 54.545 0.00 0.00 34.05 0.86
788 958 8.255206 TGCTGAGAAAATATTTGATGCTGATTT 58.745 29.630 0.39 0.00 0.00 2.17
815 985 5.295950 TGGCACCTAAAATTCATTGTGTTG 58.704 37.500 0.00 0.00 0.00 3.33
948 4135 5.138125 TCTTTTGCACAATCTTCCCAATC 57.862 39.130 0.00 0.00 0.00 2.67
949 4136 3.574284 TTTGCACAATCTTCCCAATCG 57.426 42.857 0.00 0.00 0.00 3.34
952 4139 1.401905 GCACAATCTTCCCAATCGTCC 59.598 52.381 0.00 0.00 0.00 4.79
954 4141 1.916181 ACAATCTTCCCAATCGTCCCT 59.084 47.619 0.00 0.00 0.00 4.20
1079 4266 3.092334 TCGACATCATTCATACCCACG 57.908 47.619 0.00 0.00 0.00 4.94
1080 4267 2.691011 TCGACATCATTCATACCCACGA 59.309 45.455 0.00 0.00 0.00 4.35
1081 4268 3.131400 TCGACATCATTCATACCCACGAA 59.869 43.478 0.00 0.00 0.00 3.85
1082 4269 3.245284 CGACATCATTCATACCCACGAAC 59.755 47.826 0.00 0.00 0.00 3.95
1083 4270 3.541632 ACATCATTCATACCCACGAACC 58.458 45.455 0.00 0.00 0.00 3.62
1084 4271 3.054728 ACATCATTCATACCCACGAACCA 60.055 43.478 0.00 0.00 0.00 3.67
1085 4272 2.980568 TCATTCATACCCACGAACCAC 58.019 47.619 0.00 0.00 0.00 4.16
1108 4295 3.334891 ATAAGCACACGGCCCCCA 61.335 61.111 0.00 0.00 46.50 4.96
1132 4322 2.182030 CGGTCACGCTTCTCCTCC 59.818 66.667 0.00 0.00 0.00 4.30
1186 4380 3.736094 TGTAACAATCCCTCCTGATCCT 58.264 45.455 0.00 0.00 0.00 3.24
1220 4414 1.202604 TGGCGCTGGCTTATAGTTACC 60.203 52.381 7.64 0.00 39.81 2.85
1232 4455 7.927629 TGGCTTATAGTTACCCAATTACTTACG 59.072 37.037 0.00 0.00 0.00 3.18
1274 4497 4.124351 GACCATGGACGACGGCGA 62.124 66.667 22.49 0.00 41.64 5.54
1287 4510 4.005032 GGCGACGAGAAGATCAGC 57.995 61.111 0.00 0.00 0.00 4.26
1353 4576 4.803426 GGCGAGCGCTGCTACTGT 62.803 66.667 18.48 0.00 39.88 3.55
1386 4609 3.365969 CCGTGGAAGTTTGCTATTTGTCC 60.366 47.826 0.00 0.00 0.00 4.02
1496 4733 5.902681 TCTTCCAGACAAGTGTATAATCCG 58.097 41.667 0.00 0.00 0.00 4.18
1516 4753 1.818674 GCCGAGGATGGATGTTTTTGT 59.181 47.619 0.00 0.00 0.00 2.83
1584 4864 2.710971 CGTCGTCAGCTTCTGCACG 61.711 63.158 10.36 10.36 42.74 5.34
1636 5598 1.069765 CCTGTGTTGCTCGGTCACT 59.930 57.895 0.00 0.00 33.82 3.41
1661 5623 7.040473 AGACGTACCTTACTATCAGGAAATG 57.960 40.000 0.00 0.00 35.14 2.32
1672 5634 2.235016 TCAGGAAATGGAACCAAACGG 58.765 47.619 0.00 0.00 0.00 4.44
1688 5650 4.250464 CAAACGGCCAGAGTAAGTCATAA 58.750 43.478 2.24 0.00 0.00 1.90
1718 5680 2.095415 GCCAAACTGGTAATCGAACCAC 60.095 50.000 4.82 0.00 44.68 4.16
1748 5711 3.499537 GTCGATTCAGGTTTTTACCGGTT 59.500 43.478 15.04 0.00 34.28 4.44
1752 5715 3.512219 TCAGGTTTTTACCGGTTGGAT 57.488 42.857 15.04 0.00 39.21 3.41
1753 5716 3.834938 TCAGGTTTTTACCGGTTGGATT 58.165 40.909 15.04 0.00 39.21 3.01
2002 5986 4.764679 TGTGAGTACATTCATTTGCACC 57.235 40.909 0.00 0.00 0.00 5.01
2003 5987 3.505680 TGTGAGTACATTCATTTGCACCC 59.494 43.478 0.00 0.00 0.00 4.61
2004 5988 2.746904 TGAGTACATTCATTTGCACCCG 59.253 45.455 0.00 0.00 0.00 5.28
2005 5989 1.472480 AGTACATTCATTTGCACCCGC 59.528 47.619 0.00 0.00 39.24 6.13
2039 6023 8.470040 AGTACATTCATTTGAAATGACAATGC 57.530 30.769 22.81 14.30 37.61 3.56
2040 6024 8.308931 AGTACATTCATTTGAAATGACAATGCT 58.691 29.630 22.81 15.73 37.61 3.79
2041 6025 9.571810 GTACATTCATTTGAAATGACAATGCTA 57.428 29.630 22.81 15.24 37.61 3.49
2043 6027 8.928733 ACATTCATTTGAAATGACAATGCTAAC 58.071 29.630 22.81 0.00 37.61 2.34
2044 6028 7.887996 TTCATTTGAAATGACAATGCTAACC 57.112 32.000 19.30 0.00 0.00 2.85
2045 6029 7.230849 TCATTTGAAATGACAATGCTAACCT 57.769 32.000 16.04 0.00 0.00 3.50
2046 6030 7.315142 TCATTTGAAATGACAATGCTAACCTC 58.685 34.615 16.04 0.00 0.00 3.85
2047 6031 6.899393 TTTGAAATGACAATGCTAACCTCT 57.101 33.333 0.00 0.00 0.00 3.69
2048 6032 6.899393 TTGAAATGACAATGCTAACCTCTT 57.101 33.333 0.00 0.00 0.00 2.85
2049 6033 6.258230 TGAAATGACAATGCTAACCTCTTG 57.742 37.500 0.00 0.00 0.00 3.02
2050 6034 5.183713 TGAAATGACAATGCTAACCTCTTGG 59.816 40.000 0.00 0.00 39.83 3.61
2051 6035 3.071874 TGACAATGCTAACCTCTTGGG 57.928 47.619 0.00 0.00 41.89 4.12
2052 6036 2.290896 TGACAATGCTAACCTCTTGGGG 60.291 50.000 0.00 0.00 40.03 4.96
2053 6037 1.005924 ACAATGCTAACCTCTTGGGGG 59.994 52.381 0.00 0.00 40.03 5.40
2070 6054 2.252714 GGGGGAATTTGCTAACCAACA 58.747 47.619 0.00 0.00 31.97 3.33
2071 6055 2.635427 GGGGGAATTTGCTAACCAACAA 59.365 45.455 0.00 0.00 31.97 2.83
2072 6056 3.306710 GGGGGAATTTGCTAACCAACAAG 60.307 47.826 0.00 0.00 31.97 3.16
2073 6057 3.325870 GGGAATTTGCTAACCAACAAGC 58.674 45.455 0.00 0.00 39.25 4.01
2074 6058 3.325870 GGAATTTGCTAACCAACAAGCC 58.674 45.455 0.00 0.00 37.97 4.35
2075 6059 3.325870 GAATTTGCTAACCAACAAGCCC 58.674 45.455 0.00 0.00 37.97 5.19
2076 6060 2.080654 TTTGCTAACCAACAAGCCCT 57.919 45.000 0.00 0.00 37.97 5.19
2077 6061 2.961531 TTGCTAACCAACAAGCCCTA 57.038 45.000 0.00 0.00 37.97 3.53
2078 6062 2.194201 TGCTAACCAACAAGCCCTAC 57.806 50.000 0.00 0.00 37.97 3.18
2079 6063 1.084289 GCTAACCAACAAGCCCTACG 58.916 55.000 0.00 0.00 32.40 3.51
2080 6064 1.609841 GCTAACCAACAAGCCCTACGT 60.610 52.381 0.00 0.00 32.40 3.57
2081 6065 2.774687 CTAACCAACAAGCCCTACGTT 58.225 47.619 0.00 0.00 0.00 3.99
2082 6066 1.314730 AACCAACAAGCCCTACGTTG 58.685 50.000 0.00 0.00 39.75 4.10
2083 6067 0.181824 ACCAACAAGCCCTACGTTGT 59.818 50.000 0.00 0.00 38.65 3.32
2084 6068 1.314730 CCAACAAGCCCTACGTTGTT 58.685 50.000 0.00 0.00 45.59 2.83
2086 6070 2.335316 AACAAGCCCTACGTTGTTGA 57.665 45.000 0.00 0.00 43.58 3.18
2087 6071 1.589803 ACAAGCCCTACGTTGTTGAC 58.410 50.000 0.00 0.00 32.93 3.18
2088 6072 0.872388 CAAGCCCTACGTTGTTGACC 59.128 55.000 0.00 0.00 0.00 4.02
2089 6073 0.470766 AAGCCCTACGTTGTTGACCA 59.529 50.000 0.00 0.00 0.00 4.02
2090 6074 0.250166 AGCCCTACGTTGTTGACCAC 60.250 55.000 0.00 0.00 0.00 4.16
2091 6075 1.562575 GCCCTACGTTGTTGACCACG 61.563 60.000 0.00 6.25 0.00 4.94
2092 6076 0.032403 CCCTACGTTGTTGACCACGA 59.968 55.000 13.66 0.00 0.00 4.35
2093 6077 1.134226 CCTACGTTGTTGACCACGAC 58.866 55.000 13.66 0.00 36.50 4.34
2094 6078 1.134226 CTACGTTGTTGACCACGACC 58.866 55.000 13.66 0.00 36.50 4.79
2095 6079 0.249405 TACGTTGTTGACCACGACCC 60.249 55.000 13.66 0.00 36.50 4.46
2096 6080 1.521906 CGTTGTTGACCACGACCCA 60.522 57.895 1.96 0.00 36.50 4.51
2097 6081 0.882927 CGTTGTTGACCACGACCCAT 60.883 55.000 1.96 0.00 36.50 4.00
2098 6082 0.872388 GTTGTTGACCACGACCCATC 59.128 55.000 0.00 0.00 33.94 3.51
2099 6083 0.470341 TTGTTGACCACGACCCATCA 59.530 50.000 0.00 0.00 0.00 3.07
2100 6084 0.250124 TGTTGACCACGACCCATCAC 60.250 55.000 0.00 0.00 0.00 3.06
2101 6085 0.034896 GTTGACCACGACCCATCACT 59.965 55.000 0.00 0.00 0.00 3.41
2102 6086 0.034756 TTGACCACGACCCATCACTG 59.965 55.000 0.00 0.00 0.00 3.66
2103 6087 1.741770 GACCACGACCCATCACTGC 60.742 63.158 0.00 0.00 0.00 4.40
2104 6088 2.436646 CCACGACCCATCACTGCC 60.437 66.667 0.00 0.00 0.00 4.85
2105 6089 2.347114 CACGACCCATCACTGCCA 59.653 61.111 0.00 0.00 0.00 4.92
2106 6090 1.078214 CACGACCCATCACTGCCAT 60.078 57.895 0.00 0.00 0.00 4.40
2107 6091 0.177836 CACGACCCATCACTGCCATA 59.822 55.000 0.00 0.00 0.00 2.74
2108 6092 0.465705 ACGACCCATCACTGCCATAG 59.534 55.000 0.00 0.00 0.00 2.23
2109 6093 0.882042 CGACCCATCACTGCCATAGC 60.882 60.000 0.00 0.00 40.48 2.97
2118 6102 3.516806 TGCCATAGCATGTGCAGC 58.483 55.556 7.83 5.26 46.52 5.25
2119 6103 2.122797 TGCCATAGCATGTGCAGCC 61.123 57.895 7.83 0.00 46.52 4.85
2120 6104 1.826921 GCCATAGCATGTGCAGCCT 60.827 57.895 7.83 0.00 45.16 4.58
2121 6105 1.389609 GCCATAGCATGTGCAGCCTT 61.390 55.000 7.83 0.00 45.16 4.35
2122 6106 1.971481 CCATAGCATGTGCAGCCTTA 58.029 50.000 7.83 0.00 45.16 2.69
2123 6107 2.511659 CCATAGCATGTGCAGCCTTAT 58.488 47.619 7.83 0.00 45.16 1.73
2124 6108 2.889045 CCATAGCATGTGCAGCCTTATT 59.111 45.455 7.83 0.00 45.16 1.40
2125 6109 3.057736 CCATAGCATGTGCAGCCTTATTC 60.058 47.826 7.83 0.00 45.16 1.75
2126 6110 2.431954 AGCATGTGCAGCCTTATTCT 57.568 45.000 7.83 0.00 45.16 2.40
2127 6111 2.022195 AGCATGTGCAGCCTTATTCTG 58.978 47.619 7.83 0.00 45.16 3.02
2128 6112 1.747355 GCATGTGCAGCCTTATTCTGT 59.253 47.619 0.00 0.00 41.59 3.41
2129 6113 2.479049 GCATGTGCAGCCTTATTCTGTG 60.479 50.000 0.00 0.00 41.59 3.66
2130 6114 2.857186 TGTGCAGCCTTATTCTGTGA 57.143 45.000 0.00 0.00 34.21 3.58
2131 6115 3.354948 TGTGCAGCCTTATTCTGTGAT 57.645 42.857 0.00 0.00 34.21 3.06
2132 6116 3.273434 TGTGCAGCCTTATTCTGTGATC 58.727 45.455 0.00 0.00 34.21 2.92
2133 6117 3.054875 TGTGCAGCCTTATTCTGTGATCT 60.055 43.478 0.00 0.00 34.21 2.75
2134 6118 4.162131 TGTGCAGCCTTATTCTGTGATCTA 59.838 41.667 0.00 0.00 34.21 1.98
2135 6119 4.509600 GTGCAGCCTTATTCTGTGATCTAC 59.490 45.833 0.00 0.00 34.21 2.59
2136 6120 4.061596 GCAGCCTTATTCTGTGATCTACC 58.938 47.826 0.00 0.00 34.21 3.18
2137 6121 4.202305 GCAGCCTTATTCTGTGATCTACCT 60.202 45.833 0.00 0.00 34.21 3.08
2138 6122 5.011125 GCAGCCTTATTCTGTGATCTACCTA 59.989 44.000 0.00 0.00 34.21 3.08
2139 6123 6.295575 GCAGCCTTATTCTGTGATCTACCTAT 60.296 42.308 0.00 0.00 34.21 2.57
2140 6124 7.675062 CAGCCTTATTCTGTGATCTACCTATT 58.325 38.462 0.00 0.00 0.00 1.73
2141 6125 8.153550 CAGCCTTATTCTGTGATCTACCTATTT 58.846 37.037 0.00 0.00 0.00 1.40
2142 6126 8.718656 AGCCTTATTCTGTGATCTACCTATTTT 58.281 33.333 0.00 0.00 0.00 1.82
2143 6127 9.343539 GCCTTATTCTGTGATCTACCTATTTTT 57.656 33.333 0.00 0.00 0.00 1.94
2164 6148 7.467557 TTTTTGTGACTTGCATTGATCTTTC 57.532 32.000 0.00 0.00 0.00 2.62
2165 6149 4.408993 TGTGACTTGCATTGATCTTTCG 57.591 40.909 0.00 0.00 0.00 3.46
2166 6150 3.814842 TGTGACTTGCATTGATCTTTCGT 59.185 39.130 0.00 0.00 0.00 3.85
2167 6151 4.153986 GTGACTTGCATTGATCTTTCGTG 58.846 43.478 0.00 0.00 0.00 4.35
2168 6152 3.166657 GACTTGCATTGATCTTTCGTGC 58.833 45.455 0.00 0.00 36.91 5.34
2169 6153 2.553602 ACTTGCATTGATCTTTCGTGCA 59.446 40.909 0.00 0.88 41.47 4.57
2170 6154 3.004629 ACTTGCATTGATCTTTCGTGCAA 59.995 39.130 16.65 16.65 45.66 4.08
2171 6155 2.932498 TGCATTGATCTTTCGTGCAAC 58.068 42.857 0.00 0.00 40.75 4.17
2172 6156 2.292845 TGCATTGATCTTTCGTGCAACA 59.707 40.909 0.00 0.00 40.75 3.33
2173 6157 3.057386 TGCATTGATCTTTCGTGCAACAT 60.057 39.130 0.00 0.00 40.75 2.71
2174 6158 3.545078 GCATTGATCTTTCGTGCAACATC 59.455 43.478 0.00 0.00 36.59 3.06
2175 6159 4.673580 GCATTGATCTTTCGTGCAACATCT 60.674 41.667 0.00 0.00 36.59 2.90
2176 6160 4.668576 TTGATCTTTCGTGCAACATCTC 57.331 40.909 0.00 0.00 35.74 2.75
2177 6161 3.002791 TGATCTTTCGTGCAACATCTCC 58.997 45.455 0.00 0.00 35.74 3.71
2178 6162 1.428448 TCTTTCGTGCAACATCTCCG 58.572 50.000 0.00 0.00 35.74 4.63
2179 6163 1.000394 TCTTTCGTGCAACATCTCCGA 60.000 47.619 0.00 0.00 35.74 4.55
2180 6164 1.126846 CTTTCGTGCAACATCTCCGAC 59.873 52.381 0.00 0.00 35.74 4.79
2181 6165 0.032815 TTCGTGCAACATCTCCGACA 59.967 50.000 0.00 0.00 35.74 4.35
2182 6166 0.666274 TCGTGCAACATCTCCGACAC 60.666 55.000 0.00 0.00 35.74 3.67
2183 6167 1.781555 GTGCAACATCTCCGACACG 59.218 57.895 0.00 0.00 36.32 4.49
2184 6168 1.626654 GTGCAACATCTCCGACACGG 61.627 60.000 3.66 3.66 42.85 4.94
2200 6184 2.676471 GGCCGCCACCTGAAACAT 60.676 61.111 3.91 0.00 0.00 2.71
2201 6185 1.377987 GGCCGCCACCTGAAACATA 60.378 57.895 3.91 0.00 0.00 2.29
2202 6186 0.751643 GGCCGCCACCTGAAACATAT 60.752 55.000 3.91 0.00 0.00 1.78
2203 6187 1.102978 GCCGCCACCTGAAACATATT 58.897 50.000 0.00 0.00 0.00 1.28
2204 6188 1.065551 GCCGCCACCTGAAACATATTC 59.934 52.381 0.00 0.00 0.00 1.75
2205 6189 1.676006 CCGCCACCTGAAACATATTCC 59.324 52.381 0.00 0.00 0.00 3.01
2206 6190 2.643551 CGCCACCTGAAACATATTCCT 58.356 47.619 0.00 0.00 0.00 3.36
2207 6191 3.016736 CGCCACCTGAAACATATTCCTT 58.983 45.455 0.00 0.00 0.00 3.36
2208 6192 3.181497 CGCCACCTGAAACATATTCCTTG 60.181 47.826 0.00 0.00 0.00 3.61
2209 6193 4.016444 GCCACCTGAAACATATTCCTTGA 58.984 43.478 0.00 0.00 0.00 3.02
2210 6194 4.646492 GCCACCTGAAACATATTCCTTGAT 59.354 41.667 0.00 0.00 0.00 2.57
2211 6195 5.221126 GCCACCTGAAACATATTCCTTGATC 60.221 44.000 0.00 0.00 0.00 2.92
2212 6196 6.125029 CCACCTGAAACATATTCCTTGATCT 58.875 40.000 0.00 0.00 0.00 2.75
2213 6197 6.604795 CCACCTGAAACATATTCCTTGATCTT 59.395 38.462 0.00 0.00 0.00 2.40
2214 6198 7.201767 CCACCTGAAACATATTCCTTGATCTTC 60.202 40.741 0.00 0.00 0.00 2.87
2215 6199 6.830838 ACCTGAAACATATTCCTTGATCTTCC 59.169 38.462 0.00 0.00 0.00 3.46
2216 6200 6.264067 CCTGAAACATATTCCTTGATCTTCCC 59.736 42.308 0.00 0.00 0.00 3.97
2217 6201 6.973642 TGAAACATATTCCTTGATCTTCCCT 58.026 36.000 0.00 0.00 0.00 4.20
2218 6202 7.413446 TGAAACATATTCCTTGATCTTCCCTT 58.587 34.615 0.00 0.00 0.00 3.95
2219 6203 7.895429 TGAAACATATTCCTTGATCTTCCCTTT 59.105 33.333 0.00 0.00 0.00 3.11
2220 6204 7.651027 AACATATTCCTTGATCTTCCCTTTG 57.349 36.000 0.00 0.00 0.00 2.77
2221 6205 6.973642 ACATATTCCTTGATCTTCCCTTTGA 58.026 36.000 0.00 0.00 0.00 2.69
2222 6206 7.413446 ACATATTCCTTGATCTTCCCTTTGAA 58.587 34.615 0.00 0.00 0.00 2.69
2223 6207 7.340487 ACATATTCCTTGATCTTCCCTTTGAAC 59.660 37.037 0.00 0.00 0.00 3.18
2224 6208 4.034285 TCCTTGATCTTCCCTTTGAACC 57.966 45.455 0.00 0.00 0.00 3.62
2225 6209 3.657727 TCCTTGATCTTCCCTTTGAACCT 59.342 43.478 0.00 0.00 0.00 3.50
2226 6210 4.849810 TCCTTGATCTTCCCTTTGAACCTA 59.150 41.667 0.00 0.00 0.00 3.08
2227 6211 5.312178 TCCTTGATCTTCCCTTTGAACCTAA 59.688 40.000 0.00 0.00 0.00 2.69
2228 6212 6.011628 TCCTTGATCTTCCCTTTGAACCTAAT 60.012 38.462 0.00 0.00 0.00 1.73
2229 6213 6.665248 CCTTGATCTTCCCTTTGAACCTAATT 59.335 38.462 0.00 0.00 0.00 1.40
2230 6214 7.148000 CCTTGATCTTCCCTTTGAACCTAATTC 60.148 40.741 0.00 0.00 37.88 2.17
2231 6215 6.789268 TGATCTTCCCTTTGAACCTAATTCA 58.211 36.000 0.00 0.00 45.92 2.57
2243 6227 7.206981 TGAACCTAATTCAAGAAGCTTCAAG 57.793 36.000 27.57 18.65 44.59 3.02
2244 6228 6.998074 TGAACCTAATTCAAGAAGCTTCAAGA 59.002 34.615 27.57 20.53 44.59 3.02
2245 6229 7.667219 TGAACCTAATTCAAGAAGCTTCAAGAT 59.333 33.333 27.57 12.87 44.59 2.40
2246 6230 7.622893 ACCTAATTCAAGAAGCTTCAAGATC 57.377 36.000 27.57 0.38 0.00 2.75
2247 6231 7.401246 ACCTAATTCAAGAAGCTTCAAGATCT 58.599 34.615 27.57 15.35 0.00 2.75
2248 6232 7.887495 ACCTAATTCAAGAAGCTTCAAGATCTT 59.113 33.333 27.57 19.50 32.55 2.40
2249 6233 8.397148 CCTAATTCAAGAAGCTTCAAGATCTTC 58.603 37.037 27.57 0.00 37.17 2.87
2250 6234 5.852738 TTCAAGAAGCTTCAAGATCTTCG 57.147 39.130 27.57 7.69 40.65 3.79
2251 6235 3.681897 TCAAGAAGCTTCAAGATCTTCGC 59.318 43.478 27.57 8.74 40.65 4.70
2252 6236 3.325293 AGAAGCTTCAAGATCTTCGCA 57.675 42.857 27.57 0.26 40.65 5.10
2253 6237 3.871485 AGAAGCTTCAAGATCTTCGCAT 58.129 40.909 27.57 9.82 40.65 4.73
2254 6238 5.016051 AGAAGCTTCAAGATCTTCGCATA 57.984 39.130 27.57 0.00 40.65 3.14
2255 6239 5.049167 AGAAGCTTCAAGATCTTCGCATAG 58.951 41.667 27.57 8.32 40.65 2.23
2256 6240 4.399004 AGCTTCAAGATCTTCGCATAGT 57.601 40.909 18.02 1.15 0.00 2.12
2257 6241 4.367450 AGCTTCAAGATCTTCGCATAGTC 58.633 43.478 18.02 5.22 0.00 2.59
2258 6242 4.099266 AGCTTCAAGATCTTCGCATAGTCT 59.901 41.667 18.02 6.73 0.00 3.24
2259 6243 4.208873 GCTTCAAGATCTTCGCATAGTCTG 59.791 45.833 4.57 0.00 0.00 3.51
2260 6244 4.991153 TCAAGATCTTCGCATAGTCTGT 57.009 40.909 4.57 0.00 0.00 3.41
2261 6245 4.926244 TCAAGATCTTCGCATAGTCTGTC 58.074 43.478 4.57 0.00 0.00 3.51
2262 6246 4.642437 TCAAGATCTTCGCATAGTCTGTCT 59.358 41.667 4.57 0.00 0.00 3.41
2263 6247 4.829064 AGATCTTCGCATAGTCTGTCTC 57.171 45.455 0.00 0.00 0.00 3.36
2264 6248 3.568007 AGATCTTCGCATAGTCTGTCTCC 59.432 47.826 0.00 0.00 0.00 3.71
2265 6249 2.723273 TCTTCGCATAGTCTGTCTCCA 58.277 47.619 0.00 0.00 0.00 3.86
2266 6250 2.423892 TCTTCGCATAGTCTGTCTCCAC 59.576 50.000 0.00 0.00 0.00 4.02
2267 6251 1.103803 TCGCATAGTCTGTCTCCACC 58.896 55.000 0.00 0.00 0.00 4.61
2268 6252 1.107114 CGCATAGTCTGTCTCCACCT 58.893 55.000 0.00 0.00 0.00 4.00
2269 6253 1.202348 CGCATAGTCTGTCTCCACCTG 60.202 57.143 0.00 0.00 0.00 4.00
2270 6254 1.137872 GCATAGTCTGTCTCCACCTGG 59.862 57.143 0.00 0.00 0.00 4.45
2271 6255 2.739943 CATAGTCTGTCTCCACCTGGA 58.260 52.381 0.00 0.00 43.08 3.86
2272 6256 3.303938 CATAGTCTGTCTCCACCTGGAT 58.696 50.000 0.00 0.00 44.46 3.41
2273 6257 4.474394 CATAGTCTGTCTCCACCTGGATA 58.526 47.826 0.00 0.00 44.46 2.59
2274 6258 3.025322 AGTCTGTCTCCACCTGGATAG 57.975 52.381 0.00 0.00 44.46 2.08
2284 6268 2.936823 CCTGGATAGGCAAGGGAGT 58.063 57.895 0.00 0.00 37.25 3.85
2285 6269 0.761802 CCTGGATAGGCAAGGGAGTC 59.238 60.000 0.00 0.00 37.25 3.36
2286 6270 1.694048 CCTGGATAGGCAAGGGAGTCT 60.694 57.143 0.00 0.00 37.25 3.24
2287 6271 2.426414 CCTGGATAGGCAAGGGAGTCTA 60.426 54.545 0.00 0.00 37.25 2.59
2288 6272 2.896685 CTGGATAGGCAAGGGAGTCTAG 59.103 54.545 0.00 0.00 0.00 2.43
2289 6273 2.247635 TGGATAGGCAAGGGAGTCTAGT 59.752 50.000 0.00 0.00 0.00 2.57
2290 6274 2.630580 GGATAGGCAAGGGAGTCTAGTG 59.369 54.545 0.00 0.00 0.00 2.74
2291 6275 1.486211 TAGGCAAGGGAGTCTAGTGC 58.514 55.000 4.51 4.51 34.42 4.40
2292 6276 0.545309 AGGCAAGGGAGTCTAGTGCA 60.545 55.000 12.38 0.00 36.93 4.57
2293 6277 0.324943 GGCAAGGGAGTCTAGTGCAA 59.675 55.000 12.38 0.00 36.93 4.08
2294 6278 1.443802 GCAAGGGAGTCTAGTGCAAC 58.556 55.000 0.00 0.00 35.28 4.17
2295 6279 1.714794 CAAGGGAGTCTAGTGCAACG 58.285 55.000 0.00 0.00 45.86 4.10
2296 6280 0.037232 AAGGGAGTCTAGTGCAACGC 60.037 55.000 0.00 0.00 45.86 4.84
2297 6281 1.448013 GGGAGTCTAGTGCAACGCC 60.448 63.158 0.75 0.75 45.86 5.68
2298 6282 1.292223 GGAGTCTAGTGCAACGCCA 59.708 57.895 4.36 0.00 45.86 5.69
2299 6283 0.320421 GGAGTCTAGTGCAACGCCAA 60.320 55.000 4.36 0.00 45.86 4.52
2300 6284 0.790814 GAGTCTAGTGCAACGCCAAC 59.209 55.000 0.00 0.00 45.86 3.77
2301 6285 0.393077 AGTCTAGTGCAACGCCAACT 59.607 50.000 0.00 0.00 45.86 3.16
2302 6286 1.202651 AGTCTAGTGCAACGCCAACTT 60.203 47.619 0.00 0.00 45.86 2.66
2303 6287 1.194772 GTCTAGTGCAACGCCAACTTC 59.805 52.381 0.00 0.00 45.86 3.01
2304 6288 1.202592 TCTAGTGCAACGCCAACTTCA 60.203 47.619 0.00 0.00 45.86 3.02
2305 6289 1.195448 CTAGTGCAACGCCAACTTCAG 59.805 52.381 0.00 0.00 45.86 3.02
2306 6290 1.008538 GTGCAACGCCAACTTCAGG 60.009 57.895 0.00 0.00 0.00 3.86
2314 6298 3.851051 CCAACTTCAGGCTCTCCTC 57.149 57.895 0.00 0.00 41.93 3.71
2315 6299 0.979665 CCAACTTCAGGCTCTCCTCA 59.020 55.000 0.00 0.00 41.93 3.86
2316 6300 1.338579 CCAACTTCAGGCTCTCCTCAC 60.339 57.143 0.00 0.00 41.93 3.51
2317 6301 1.345741 CAACTTCAGGCTCTCCTCACA 59.654 52.381 0.00 0.00 41.93 3.58
2318 6302 0.972883 ACTTCAGGCTCTCCTCACAC 59.027 55.000 0.00 0.00 41.93 3.82
2319 6303 0.108898 CTTCAGGCTCTCCTCACACG 60.109 60.000 0.00 0.00 41.93 4.49
2320 6304 2.125753 CAGGCTCTCCTCACACGC 60.126 66.667 0.00 0.00 41.93 5.34
2321 6305 3.386237 AGGCTCTCCTCACACGCC 61.386 66.667 0.00 0.00 38.72 5.68
2322 6306 4.803426 GGCTCTCCTCACACGCCG 62.803 72.222 0.00 0.00 0.00 6.46
2323 6307 3.749064 GCTCTCCTCACACGCCGA 61.749 66.667 0.00 0.00 0.00 5.54
2324 6308 3.069980 GCTCTCCTCACACGCCGAT 62.070 63.158 0.00 0.00 0.00 4.18
2325 6309 1.725557 GCTCTCCTCACACGCCGATA 61.726 60.000 0.00 0.00 0.00 2.92
2326 6310 0.309302 CTCTCCTCACACGCCGATAG 59.691 60.000 0.00 0.00 0.00 2.08
2327 6311 1.299468 CTCCTCACACGCCGATAGC 60.299 63.158 0.00 0.00 38.52 2.97
2328 6312 1.729470 CTCCTCACACGCCGATAGCT 61.729 60.000 0.00 0.00 40.39 3.32
2329 6313 1.299468 CCTCACACGCCGATAGCTC 60.299 63.158 0.00 0.00 40.39 4.09
2330 6314 1.729470 CCTCACACGCCGATAGCTCT 61.729 60.000 0.00 0.00 40.39 4.09
2331 6315 0.593518 CTCACACGCCGATAGCTCTG 60.594 60.000 0.00 0.00 40.39 3.35
2332 6316 1.139734 CACACGCCGATAGCTCTGT 59.860 57.895 0.00 0.00 40.39 3.41
2333 6317 0.867753 CACACGCCGATAGCTCTGTC 60.868 60.000 0.00 0.00 40.39 3.51
2334 6318 1.032657 ACACGCCGATAGCTCTGTCT 61.033 55.000 0.00 0.00 40.39 3.41
2335 6319 0.317436 CACGCCGATAGCTCTGTCTC 60.317 60.000 0.00 0.00 40.39 3.36
2336 6320 1.284408 CGCCGATAGCTCTGTCTCC 59.716 63.158 0.00 0.00 40.39 3.71
2337 6321 1.448119 CGCCGATAGCTCTGTCTCCA 61.448 60.000 0.00 0.00 40.39 3.86
2338 6322 0.747255 GCCGATAGCTCTGTCTCCAA 59.253 55.000 0.00 0.00 38.99 3.53
2339 6323 1.342819 GCCGATAGCTCTGTCTCCAAT 59.657 52.381 0.00 0.00 38.99 3.16
2340 6324 2.865670 GCCGATAGCTCTGTCTCCAATG 60.866 54.545 0.00 0.00 38.99 2.82
2341 6325 2.402305 CGATAGCTCTGTCTCCAATGC 58.598 52.381 0.00 0.00 0.00 3.56
2342 6326 2.402305 GATAGCTCTGTCTCCAATGCG 58.598 52.381 0.00 0.00 0.00 4.73
2343 6327 0.179100 TAGCTCTGTCTCCAATGCGC 60.179 55.000 0.00 0.00 0.00 6.09
2344 6328 2.467826 GCTCTGTCTCCAATGCGCC 61.468 63.158 4.18 0.00 0.00 6.53
2345 6329 1.817099 CTCTGTCTCCAATGCGCCC 60.817 63.158 4.18 0.00 0.00 6.13
2346 6330 3.197790 CTGTCTCCAATGCGCCCG 61.198 66.667 4.18 0.00 0.00 6.13
2347 6331 4.776322 TGTCTCCAATGCGCCCGG 62.776 66.667 4.18 2.05 0.00 5.73
2362 6346 3.781307 CGGGCAGTTCCGGATCCA 61.781 66.667 13.41 0.00 45.78 3.41
2363 6347 2.919043 GGGCAGTTCCGGATCCAT 59.081 61.111 13.41 0.00 34.94 3.41
2364 6348 1.227973 GGGCAGTTCCGGATCCATC 60.228 63.158 13.41 0.00 34.94 3.51
2365 6349 1.700042 GGGCAGTTCCGGATCCATCT 61.700 60.000 13.41 0.88 34.94 2.90
2366 6350 0.533755 GGCAGTTCCGGATCCATCTG 60.534 60.000 13.41 13.93 0.00 2.90
2367 6351 1.162800 GCAGTTCCGGATCCATCTGC 61.163 60.000 22.29 22.29 40.66 4.26
2368 6352 0.178767 CAGTTCCGGATCCATCTGCA 59.821 55.000 13.41 0.00 31.76 4.41
2369 6353 1.135094 AGTTCCGGATCCATCTGCAT 58.865 50.000 13.41 0.00 31.76 3.96
2370 6354 1.202734 AGTTCCGGATCCATCTGCATG 60.203 52.381 13.41 0.00 31.76 4.06
2371 6355 0.535780 TTCCGGATCCATCTGCATGC 60.536 55.000 11.82 11.82 31.76 4.06
2372 6356 1.072678 CCGGATCCATCTGCATGCT 59.927 57.895 20.33 0.00 31.76 3.79
2373 6357 1.235281 CCGGATCCATCTGCATGCTG 61.235 60.000 20.33 18.97 31.76 4.41
2374 6358 1.853114 CGGATCCATCTGCATGCTGC 61.853 60.000 20.33 4.24 45.29 5.25
2385 6369 0.508641 GCATGCTGCGTAGATAACCG 59.491 55.000 11.37 0.00 31.71 4.44
2394 6378 2.536365 CGTAGATAACCGCACATGTGT 58.464 47.619 26.01 9.67 0.00 3.72
2407 6391 3.616956 ACATGTGTGATCACGAAGGAT 57.383 42.857 20.54 5.38 46.49 3.24
2408 6392 3.525537 ACATGTGTGATCACGAAGGATC 58.474 45.455 20.54 0.00 46.49 3.36
2414 6398 3.643159 TGATCACGAAGGATCATACCG 57.357 47.619 12.69 0.00 46.46 4.02
2415 6399 2.296190 TGATCACGAAGGATCATACCGG 59.704 50.000 0.00 0.00 46.46 5.28
2416 6400 0.387929 TCACGAAGGATCATACCGGC 59.612 55.000 0.00 0.00 34.73 6.13
2417 6401 0.104120 CACGAAGGATCATACCGGCA 59.896 55.000 0.00 0.00 34.73 5.69
2418 6402 1.048601 ACGAAGGATCATACCGGCAT 58.951 50.000 0.00 0.00 34.73 4.40
2419 6403 1.000955 ACGAAGGATCATACCGGCATC 59.999 52.381 0.00 0.00 34.73 3.91
2420 6404 1.714794 GAAGGATCATACCGGCATCG 58.285 55.000 0.00 0.00 34.73 3.84
2421 6405 1.000955 GAAGGATCATACCGGCATCGT 59.999 52.381 0.00 0.00 34.73 3.73
2422 6406 0.603569 AGGATCATACCGGCATCGTC 59.396 55.000 0.00 0.00 34.73 4.20
2423 6407 0.389948 GGATCATACCGGCATCGTCC 60.390 60.000 0.00 0.00 33.95 4.79
2430 6414 2.202878 CGGCATCGTCCGTTCCAT 60.203 61.111 5.59 0.00 44.18 3.41
2431 6415 2.237751 CGGCATCGTCCGTTCCATC 61.238 63.158 5.59 0.00 44.18 3.51
2432 6416 1.144057 GGCATCGTCCGTTCCATCT 59.856 57.895 0.00 0.00 0.00 2.90
2433 6417 0.387929 GGCATCGTCCGTTCCATCTA 59.612 55.000 0.00 0.00 0.00 1.98
2434 6418 1.488527 GCATCGTCCGTTCCATCTAC 58.511 55.000 0.00 0.00 0.00 2.59
2435 6419 1.868519 GCATCGTCCGTTCCATCTACC 60.869 57.143 0.00 0.00 0.00 3.18
2436 6420 1.681793 CATCGTCCGTTCCATCTACCT 59.318 52.381 0.00 0.00 0.00 3.08
2437 6421 1.100510 TCGTCCGTTCCATCTACCTG 58.899 55.000 0.00 0.00 0.00 4.00
2438 6422 0.815734 CGTCCGTTCCATCTACCTGT 59.184 55.000 0.00 0.00 0.00 4.00
2439 6423 2.019249 CGTCCGTTCCATCTACCTGTA 58.981 52.381 0.00 0.00 0.00 2.74
2440 6424 2.223433 CGTCCGTTCCATCTACCTGTAC 60.223 54.545 0.00 0.00 0.00 2.90
2441 6425 2.756760 GTCCGTTCCATCTACCTGTACA 59.243 50.000 0.00 0.00 0.00 2.90
2442 6426 3.194116 GTCCGTTCCATCTACCTGTACAA 59.806 47.826 0.00 0.00 0.00 2.41
2443 6427 3.833650 TCCGTTCCATCTACCTGTACAAA 59.166 43.478 0.00 0.00 0.00 2.83
2444 6428 3.930848 CCGTTCCATCTACCTGTACAAAC 59.069 47.826 0.00 0.00 0.00 2.93
2445 6429 3.611113 CGTTCCATCTACCTGTACAAACG 59.389 47.826 8.68 8.68 0.00 3.60
2446 6430 4.616604 CGTTCCATCTACCTGTACAAACGA 60.617 45.833 15.09 2.89 39.27 3.85
2447 6431 5.232463 GTTCCATCTACCTGTACAAACGAA 58.768 41.667 0.00 0.00 0.00 3.85
2448 6432 4.813027 TCCATCTACCTGTACAAACGAAC 58.187 43.478 0.00 0.00 0.00 3.95
2449 6433 3.930848 CCATCTACCTGTACAAACGAACC 59.069 47.826 0.00 0.00 0.00 3.62
2450 6434 3.287312 TCTACCTGTACAAACGAACCG 57.713 47.619 0.00 0.00 0.00 4.44
2451 6435 2.622942 TCTACCTGTACAAACGAACCGT 59.377 45.455 0.00 0.00 43.97 4.83
2452 6436 1.574134 ACCTGTACAAACGAACCGTG 58.426 50.000 0.00 0.00 39.99 4.94
2453 6437 1.136695 ACCTGTACAAACGAACCGTGA 59.863 47.619 0.00 0.00 39.99 4.35
2454 6438 2.203401 CCTGTACAAACGAACCGTGAA 58.797 47.619 0.00 0.00 39.99 3.18
2455 6439 2.608546 CCTGTACAAACGAACCGTGAAA 59.391 45.455 0.00 0.00 39.99 2.69
2456 6440 3.063725 CCTGTACAAACGAACCGTGAAAA 59.936 43.478 0.00 0.00 39.99 2.29
2457 6441 4.260866 CCTGTACAAACGAACCGTGAAAAT 60.261 41.667 0.00 0.00 39.99 1.82
2458 6442 5.232610 TGTACAAACGAACCGTGAAAATT 57.767 34.783 0.00 0.00 39.99 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 291 6.616577 ACCCTCAGTTATGAAGGGTTTAAAA 58.383 36.000 6.49 0.00 46.46 1.52
301 302 1.688311 CCCTCCGACCCTCAGTTATGA 60.688 57.143 0.00 0.00 0.00 2.15
386 387 4.616604 CGGTCGACTGGTTTCTGTGTATAA 60.617 45.833 16.99 0.00 0.00 0.98
505 506 1.831726 GGGTAGGTACGGAGAGGCC 60.832 68.421 0.00 0.00 0.00 5.19
514 515 5.198965 TGACAGTAGAATGAGGGTAGGTAC 58.801 45.833 0.00 0.00 0.00 3.34
524 526 8.035394 GTGGTTCTAAATCTGACAGTAGAATGA 58.965 37.037 13.96 5.04 35.60 2.57
540 542 2.875933 CAAAGCCTGTCGTGGTTCTAAA 59.124 45.455 0.00 0.00 0.00 1.85
607 609 2.202492 CGCCAAGTCCTCGACTCG 60.202 66.667 0.00 0.00 42.59 4.18
662 664 4.353191 ACTTACGTATATCTCTCCCCTGGA 59.647 45.833 0.00 0.00 0.00 3.86
741 911 7.333174 TCAGCATTAATCGTGATTTACTTGTCA 59.667 33.333 0.00 0.00 32.50 3.58
788 958 6.164876 CACAATGAATTTTAGGTGCCAATCA 58.835 36.000 0.00 0.00 0.00 2.57
815 985 2.286772 CGTTGTAAGGGCCGCAAATATC 60.287 50.000 11.57 1.47 0.00 1.63
948 4135 5.404946 TCGTGATTTACTTTTCTAGGGACG 58.595 41.667 0.00 0.00 0.00 4.79
949 4136 7.039882 TGATCGTGATTTACTTTTCTAGGGAC 58.960 38.462 0.00 0.00 0.00 4.46
952 4139 9.967346 TCTATGATCGTGATTTACTTTTCTAGG 57.033 33.333 0.00 0.00 0.00 3.02
1026 4213 2.404995 GGCAGTGCTGTGAGATGGC 61.405 63.158 16.11 0.00 0.00 4.40
1079 4266 2.351726 GTGTGCTTATCCATCGTGGTTC 59.648 50.000 4.33 0.00 39.03 3.62
1080 4267 2.356135 GTGTGCTTATCCATCGTGGTT 58.644 47.619 4.33 0.00 39.03 3.67
1081 4268 1.739035 CGTGTGCTTATCCATCGTGGT 60.739 52.381 4.33 0.00 39.03 4.16
1082 4269 0.930310 CGTGTGCTTATCCATCGTGG 59.070 55.000 0.00 0.00 39.43 4.94
1083 4270 0.930310 CCGTGTGCTTATCCATCGTG 59.070 55.000 0.00 0.00 0.00 4.35
1084 4271 0.810031 GCCGTGTGCTTATCCATCGT 60.810 55.000 0.00 0.00 36.87 3.73
1085 4272 1.498865 GGCCGTGTGCTTATCCATCG 61.499 60.000 0.00 0.00 40.92 3.84
1132 4322 1.549620 AGCGAGGAGGCATATGATGAG 59.450 52.381 6.97 0.00 34.64 2.90
1186 4380 1.815003 CGCCATGATCAACGAGGCA 60.815 57.895 23.07 0.00 45.47 4.75
1220 4414 4.634004 TGGCAACAGATCGTAAGTAATTGG 59.366 41.667 0.00 0.00 46.17 3.16
1256 4479 4.129737 CGCCGTCGTCCATGGTCT 62.130 66.667 12.58 0.00 32.89 3.85
1274 4497 0.107945 GGGCAAGCTGATCTTCTCGT 60.108 55.000 0.00 0.00 31.27 4.18
1386 4609 1.423721 CCGTCATGCACTCGTCCATG 61.424 60.000 0.00 0.00 40.05 3.66
1496 4733 1.818674 ACAAAAACATCCATCCTCGGC 59.181 47.619 0.00 0.00 0.00 5.54
1516 4753 8.880750 CCAGTGATCGATACTCGTATCTTATTA 58.119 37.037 13.45 3.73 41.35 0.98
1570 4814 1.719600 AAGATCGTGCAGAAGCTGAC 58.280 50.000 0.00 0.00 42.74 3.51
1572 4816 2.071540 TCAAAGATCGTGCAGAAGCTG 58.928 47.619 0.00 0.00 42.74 4.24
1584 4864 4.505922 CGAAGCAGTAGGTGATCAAAGATC 59.494 45.833 0.00 0.15 0.00 2.75
1636 5598 7.230108 CCATTTCCTGATAGTAAGGTACGTCTA 59.770 40.741 0.00 0.00 36.14 2.59
1661 5623 0.035739 TACTCTGGCCGTTTGGTTCC 59.964 55.000 0.00 0.00 37.67 3.62
1672 5634 9.290483 GCTTTTTAAATTATGACTTACTCTGGC 57.710 33.333 0.00 0.00 0.00 4.85
1688 5650 7.662897 TCGATTACCAGTTTGGCTTTTTAAAT 58.337 30.769 0.00 0.00 42.67 1.40
1717 5679 0.246635 CCTGAATCGACGACCTTGGT 59.753 55.000 0.00 0.00 0.00 3.67
1718 5680 0.246635 ACCTGAATCGACGACCTTGG 59.753 55.000 0.00 3.46 0.00 3.61
1748 5711 9.698309 TTTTATTGCTTAAAAATCGACAATCCA 57.302 25.926 0.00 0.00 36.95 3.41
1981 5965 3.505680 GGGTGCAAATGAATGTACTCACA 59.494 43.478 0.00 0.00 36.53 3.58
1982 5966 3.426159 CGGGTGCAAATGAATGTACTCAC 60.426 47.826 0.00 0.00 36.32 3.51
1983 5967 2.746904 CGGGTGCAAATGAATGTACTCA 59.253 45.455 0.00 0.00 36.32 3.41
1984 5968 2.477863 GCGGGTGCAAATGAATGTACTC 60.478 50.000 0.00 0.00 42.15 2.59
1985 5969 1.472480 GCGGGTGCAAATGAATGTACT 59.528 47.619 0.00 0.00 42.15 2.73
1986 5970 1.908065 GCGGGTGCAAATGAATGTAC 58.092 50.000 0.00 0.00 42.15 2.90
2013 5997 8.928733 GCATTGTCATTTCAAATGAATGTACTT 58.071 29.630 14.56 0.00 33.54 2.24
2014 5998 8.308931 AGCATTGTCATTTCAAATGAATGTACT 58.691 29.630 14.56 7.28 33.54 2.73
2015 5999 8.470040 AGCATTGTCATTTCAAATGAATGTAC 57.530 30.769 14.56 3.38 33.54 2.90
2017 6001 8.928733 GTTAGCATTGTCATTTCAAATGAATGT 58.071 29.630 14.56 8.90 33.54 2.71
2018 6002 8.385111 GGTTAGCATTGTCATTTCAAATGAATG 58.615 33.333 14.56 15.46 33.54 2.67
2019 6003 8.316214 AGGTTAGCATTGTCATTTCAAATGAAT 58.684 29.630 14.56 3.05 33.54 2.57
2020 6004 7.669427 AGGTTAGCATTGTCATTTCAAATGAA 58.331 30.769 14.56 0.53 0.00 2.57
2021 6005 7.177216 AGAGGTTAGCATTGTCATTTCAAATGA 59.823 33.333 8.85 8.85 0.00 2.57
2022 6006 7.318141 AGAGGTTAGCATTGTCATTTCAAATG 58.682 34.615 3.46 3.46 0.00 2.32
2023 6007 7.472334 AGAGGTTAGCATTGTCATTTCAAAT 57.528 32.000 0.00 0.00 0.00 2.32
2024 6008 6.899393 AGAGGTTAGCATTGTCATTTCAAA 57.101 33.333 0.00 0.00 0.00 2.69
2025 6009 6.294675 CCAAGAGGTTAGCATTGTCATTTCAA 60.295 38.462 0.00 0.00 0.00 2.69
2026 6010 5.183713 CCAAGAGGTTAGCATTGTCATTTCA 59.816 40.000 0.00 0.00 0.00 2.69
2027 6011 5.393461 CCCAAGAGGTTAGCATTGTCATTTC 60.393 44.000 0.00 0.00 0.00 2.17
2028 6012 4.463891 CCCAAGAGGTTAGCATTGTCATTT 59.536 41.667 0.00 0.00 0.00 2.32
2029 6013 4.019174 CCCAAGAGGTTAGCATTGTCATT 58.981 43.478 0.00 0.00 0.00 2.57
2030 6014 3.624777 CCCAAGAGGTTAGCATTGTCAT 58.375 45.455 0.00 0.00 0.00 3.06
2031 6015 2.290896 CCCCAAGAGGTTAGCATTGTCA 60.291 50.000 0.00 0.00 0.00 3.58
2032 6016 2.369394 CCCCAAGAGGTTAGCATTGTC 58.631 52.381 0.00 0.00 0.00 3.18
2033 6017 1.005924 CCCCCAAGAGGTTAGCATTGT 59.994 52.381 0.00 0.00 0.00 2.71
2034 6018 1.767759 CCCCCAAGAGGTTAGCATTG 58.232 55.000 0.00 0.00 0.00 2.82
2050 6034 2.252714 TGTTGGTTAGCAAATTCCCCC 58.747 47.619 0.00 0.00 0.00 5.40
2051 6035 3.864540 GCTTGTTGGTTAGCAAATTCCCC 60.865 47.826 0.00 0.00 37.35 4.81
2052 6036 3.325870 GCTTGTTGGTTAGCAAATTCCC 58.674 45.455 0.00 0.00 37.35 3.97
2053 6037 3.325870 GGCTTGTTGGTTAGCAAATTCC 58.674 45.455 0.00 0.00 39.15 3.01
2054 6038 3.006859 AGGGCTTGTTGGTTAGCAAATTC 59.993 43.478 0.00 0.00 39.15 2.17
2055 6039 2.972021 AGGGCTTGTTGGTTAGCAAATT 59.028 40.909 0.00 0.00 39.15 1.82
2056 6040 2.608623 AGGGCTTGTTGGTTAGCAAAT 58.391 42.857 0.00 0.00 39.15 2.32
2057 6041 2.080654 AGGGCTTGTTGGTTAGCAAA 57.919 45.000 0.00 0.00 39.15 3.68
2058 6042 2.510613 GTAGGGCTTGTTGGTTAGCAA 58.489 47.619 0.00 0.00 39.15 3.91
2059 6043 1.609580 CGTAGGGCTTGTTGGTTAGCA 60.610 52.381 0.00 0.00 39.15 3.49
2060 6044 1.084289 CGTAGGGCTTGTTGGTTAGC 58.916 55.000 0.00 0.00 36.66 3.09
2061 6045 2.467566 ACGTAGGGCTTGTTGGTTAG 57.532 50.000 0.00 0.00 0.00 2.34
2062 6046 2.158784 ACAACGTAGGGCTTGTTGGTTA 60.159 45.455 8.90 0.00 45.48 2.85
2063 6047 1.314730 CAACGTAGGGCTTGTTGGTT 58.685 50.000 0.00 0.00 39.36 3.67
2064 6048 0.181824 ACAACGTAGGGCTTGTTGGT 59.818 50.000 8.90 0.00 45.48 3.67
2065 6049 1.314730 AACAACGTAGGGCTTGTTGG 58.685 50.000 8.90 0.00 45.48 3.77
2066 6050 2.399396 CAACAACGTAGGGCTTGTTG 57.601 50.000 12.59 12.59 46.45 3.33
2067 6051 1.944709 GTCAACAACGTAGGGCTTGTT 59.055 47.619 0.00 0.00 40.47 2.83
2068 6052 1.589803 GTCAACAACGTAGGGCTTGT 58.410 50.000 0.00 0.00 31.76 3.16
2069 6053 0.872388 GGTCAACAACGTAGGGCTTG 59.128 55.000 0.00 0.00 0.00 4.01
2070 6054 0.470766 TGGTCAACAACGTAGGGCTT 59.529 50.000 0.00 0.00 0.00 4.35
2071 6055 0.250166 GTGGTCAACAACGTAGGGCT 60.250 55.000 0.00 0.00 0.00 5.19
2072 6056 1.562575 CGTGGTCAACAACGTAGGGC 61.563 60.000 1.85 0.00 0.00 5.19
2073 6057 0.032403 TCGTGGTCAACAACGTAGGG 59.968 55.000 9.71 0.00 0.00 3.53
2074 6058 1.134226 GTCGTGGTCAACAACGTAGG 58.866 55.000 9.71 0.00 0.00 3.18
2075 6059 1.134226 GGTCGTGGTCAACAACGTAG 58.866 55.000 9.71 0.00 0.00 3.51
2076 6060 0.249405 GGGTCGTGGTCAACAACGTA 60.249 55.000 9.71 0.00 0.00 3.57
2077 6061 1.522130 GGGTCGTGGTCAACAACGT 60.522 57.895 9.71 0.00 0.00 3.99
2078 6062 0.882927 ATGGGTCGTGGTCAACAACG 60.883 55.000 3.64 3.64 0.00 4.10
2079 6063 0.872388 GATGGGTCGTGGTCAACAAC 59.128 55.000 0.00 0.00 0.00 3.32
2080 6064 0.470341 TGATGGGTCGTGGTCAACAA 59.530 50.000 0.00 0.00 0.00 2.83
2081 6065 0.250124 GTGATGGGTCGTGGTCAACA 60.250 55.000 0.00 0.00 0.00 3.33
2082 6066 0.034896 AGTGATGGGTCGTGGTCAAC 59.965 55.000 0.00 0.00 0.00 3.18
2083 6067 0.034756 CAGTGATGGGTCGTGGTCAA 59.965 55.000 0.00 0.00 0.00 3.18
2084 6068 1.671166 CAGTGATGGGTCGTGGTCA 59.329 57.895 0.00 0.00 0.00 4.02
2085 6069 1.741770 GCAGTGATGGGTCGTGGTC 60.742 63.158 0.00 0.00 0.00 4.02
2086 6070 2.347490 GCAGTGATGGGTCGTGGT 59.653 61.111 0.00 0.00 0.00 4.16
2087 6071 2.436646 GGCAGTGATGGGTCGTGG 60.437 66.667 0.00 0.00 0.00 4.94
2088 6072 0.177836 TATGGCAGTGATGGGTCGTG 59.822 55.000 0.00 0.00 0.00 4.35
2089 6073 0.465705 CTATGGCAGTGATGGGTCGT 59.534 55.000 0.00 0.00 0.00 4.34
2090 6074 0.882042 GCTATGGCAGTGATGGGTCG 60.882 60.000 0.00 0.00 38.54 4.79
2091 6075 0.181114 TGCTATGGCAGTGATGGGTC 59.819 55.000 0.00 0.00 44.28 4.46
2092 6076 2.310251 TGCTATGGCAGTGATGGGT 58.690 52.632 0.00 0.00 44.28 4.51
2102 6086 1.389609 AAGGCTGCACATGCTATGGC 61.390 55.000 5.31 7.77 42.66 4.40
2103 6087 1.971481 TAAGGCTGCACATGCTATGG 58.029 50.000 5.31 0.00 42.66 2.74
2104 6088 3.819337 AGAATAAGGCTGCACATGCTATG 59.181 43.478 5.31 0.00 42.66 2.23
2105 6089 3.819337 CAGAATAAGGCTGCACATGCTAT 59.181 43.478 5.31 0.00 42.66 2.97
2106 6090 3.208594 CAGAATAAGGCTGCACATGCTA 58.791 45.455 5.31 0.00 42.66 3.49
2107 6091 2.022195 CAGAATAAGGCTGCACATGCT 58.978 47.619 5.31 0.00 42.66 3.79
2108 6092 1.747355 ACAGAATAAGGCTGCACATGC 59.253 47.619 0.50 0.00 42.50 4.06
2109 6093 3.011818 TCACAGAATAAGGCTGCACATG 58.988 45.455 0.50 0.00 36.86 3.21
2110 6094 3.354948 TCACAGAATAAGGCTGCACAT 57.645 42.857 0.50 0.00 36.86 3.21
2111 6095 2.857186 TCACAGAATAAGGCTGCACA 57.143 45.000 0.50 0.00 36.86 4.57
2112 6096 3.539604 AGATCACAGAATAAGGCTGCAC 58.460 45.455 0.50 0.00 36.86 4.57
2113 6097 3.920231 AGATCACAGAATAAGGCTGCA 57.080 42.857 0.50 0.00 36.86 4.41
2114 6098 4.061596 GGTAGATCACAGAATAAGGCTGC 58.938 47.826 0.00 0.00 36.86 5.25
2115 6099 5.543507 AGGTAGATCACAGAATAAGGCTG 57.456 43.478 0.00 0.00 39.26 4.85
2116 6100 7.863901 AATAGGTAGATCACAGAATAAGGCT 57.136 36.000 0.00 0.00 0.00 4.58
2117 6101 8.910351 AAAATAGGTAGATCACAGAATAAGGC 57.090 34.615 0.00 0.00 0.00 4.35
2140 6124 6.198778 CGAAAGATCAATGCAAGTCACAAAAA 59.801 34.615 0.00 0.00 0.00 1.94
2141 6125 5.686841 CGAAAGATCAATGCAAGTCACAAAA 59.313 36.000 0.00 0.00 0.00 2.44
2142 6126 5.214417 CGAAAGATCAATGCAAGTCACAAA 58.786 37.500 0.00 0.00 0.00 2.83
2143 6127 4.275689 ACGAAAGATCAATGCAAGTCACAA 59.724 37.500 0.00 0.00 0.00 3.33
2144 6128 3.814842 ACGAAAGATCAATGCAAGTCACA 59.185 39.130 0.00 0.00 0.00 3.58
2145 6129 4.153986 CACGAAAGATCAATGCAAGTCAC 58.846 43.478 0.00 0.00 0.00 3.67
2146 6130 3.365264 GCACGAAAGATCAATGCAAGTCA 60.365 43.478 0.00 0.00 37.31 3.41
2147 6131 3.166657 GCACGAAAGATCAATGCAAGTC 58.833 45.455 0.00 0.00 37.31 3.01
2148 6132 2.553602 TGCACGAAAGATCAATGCAAGT 59.446 40.909 0.00 0.00 41.70 3.16
2149 6133 3.206034 TGCACGAAAGATCAATGCAAG 57.794 42.857 0.00 0.00 41.70 4.01
2150 6134 3.243334 TGTTGCACGAAAGATCAATGCAA 60.243 39.130 14.30 14.30 46.72 4.08
2151 6135 2.292845 TGTTGCACGAAAGATCAATGCA 59.707 40.909 0.00 0.00 42.47 3.96
2152 6136 2.932498 TGTTGCACGAAAGATCAATGC 58.068 42.857 0.00 0.00 37.67 3.56
2153 6137 4.978186 AGATGTTGCACGAAAGATCAATG 58.022 39.130 0.00 0.00 33.41 2.82
2154 6138 4.095483 GGAGATGTTGCACGAAAGATCAAT 59.905 41.667 0.00 0.00 33.41 2.57
2155 6139 3.436704 GGAGATGTTGCACGAAAGATCAA 59.563 43.478 0.00 0.00 33.41 2.57
2156 6140 3.002791 GGAGATGTTGCACGAAAGATCA 58.997 45.455 0.00 0.00 33.41 2.92
2157 6141 2.029728 CGGAGATGTTGCACGAAAGATC 59.970 50.000 0.00 0.00 31.62 2.75
2158 6142 2.002586 CGGAGATGTTGCACGAAAGAT 58.997 47.619 0.00 0.00 0.00 2.40
2159 6143 1.000394 TCGGAGATGTTGCACGAAAGA 60.000 47.619 0.00 0.00 0.00 2.52
2160 6144 1.126846 GTCGGAGATGTTGCACGAAAG 59.873 52.381 0.00 0.00 40.67 2.62
2161 6145 1.144969 GTCGGAGATGTTGCACGAAA 58.855 50.000 0.00 0.00 40.67 3.46
2162 6146 0.032815 TGTCGGAGATGTTGCACGAA 59.967 50.000 0.00 0.00 40.67 3.85
2163 6147 0.666274 GTGTCGGAGATGTTGCACGA 60.666 55.000 0.00 0.00 40.67 4.35
2164 6148 1.781555 GTGTCGGAGATGTTGCACG 59.218 57.895 0.00 0.00 40.67 5.34
2165 6149 1.781555 CGTGTCGGAGATGTTGCAC 59.218 57.895 0.00 0.00 40.67 4.57
2166 6150 4.260194 CGTGTCGGAGATGTTGCA 57.740 55.556 0.00 0.00 40.67 4.08
2183 6167 0.751643 ATATGTTTCAGGTGGCGGCC 60.752 55.000 13.32 13.32 0.00 6.13
2184 6168 1.065551 GAATATGTTTCAGGTGGCGGC 59.934 52.381 0.00 0.00 0.00 6.53
2185 6169 1.676006 GGAATATGTTTCAGGTGGCGG 59.324 52.381 0.00 0.00 0.00 6.13
2186 6170 2.643551 AGGAATATGTTTCAGGTGGCG 58.356 47.619 0.00 0.00 0.00 5.69
2187 6171 4.016444 TCAAGGAATATGTTTCAGGTGGC 58.984 43.478 0.00 0.00 0.00 5.01
2188 6172 6.125029 AGATCAAGGAATATGTTTCAGGTGG 58.875 40.000 0.00 0.00 0.00 4.61
2189 6173 7.201767 GGAAGATCAAGGAATATGTTTCAGGTG 60.202 40.741 0.00 0.00 0.00 4.00
2190 6174 6.830838 GGAAGATCAAGGAATATGTTTCAGGT 59.169 38.462 0.00 0.00 0.00 4.00
2191 6175 6.264067 GGGAAGATCAAGGAATATGTTTCAGG 59.736 42.308 0.00 0.00 0.00 3.86
2192 6176 7.059156 AGGGAAGATCAAGGAATATGTTTCAG 58.941 38.462 0.00 0.00 0.00 3.02
2193 6177 6.973642 AGGGAAGATCAAGGAATATGTTTCA 58.026 36.000 0.00 0.00 0.00 2.69
2194 6178 7.888250 AAGGGAAGATCAAGGAATATGTTTC 57.112 36.000 0.00 0.00 0.00 2.78
2195 6179 7.895429 TCAAAGGGAAGATCAAGGAATATGTTT 59.105 33.333 0.00 0.00 0.00 2.83
2196 6180 7.413446 TCAAAGGGAAGATCAAGGAATATGTT 58.587 34.615 0.00 0.00 0.00 2.71
2197 6181 6.973642 TCAAAGGGAAGATCAAGGAATATGT 58.026 36.000 0.00 0.00 0.00 2.29
2198 6182 7.201857 GGTTCAAAGGGAAGATCAAGGAATATG 60.202 40.741 0.00 0.00 35.82 1.78
2199 6183 6.836007 GGTTCAAAGGGAAGATCAAGGAATAT 59.164 38.462 0.00 0.00 35.82 1.28
2200 6184 6.011628 AGGTTCAAAGGGAAGATCAAGGAATA 60.012 38.462 0.00 0.00 35.82 1.75
2201 6185 5.019470 GGTTCAAAGGGAAGATCAAGGAAT 58.981 41.667 0.00 0.00 35.82 3.01
2202 6186 4.106341 AGGTTCAAAGGGAAGATCAAGGAA 59.894 41.667 0.00 0.00 35.82 3.36
2203 6187 3.657727 AGGTTCAAAGGGAAGATCAAGGA 59.342 43.478 0.00 0.00 35.82 3.36
2204 6188 4.039603 AGGTTCAAAGGGAAGATCAAGG 57.960 45.455 0.00 0.00 35.82 3.61
2205 6189 7.394359 TGAATTAGGTTCAAAGGGAAGATCAAG 59.606 37.037 0.00 0.00 43.64 3.02
2206 6190 7.237982 TGAATTAGGTTCAAAGGGAAGATCAA 58.762 34.615 0.00 0.00 43.64 2.57
2207 6191 6.789268 TGAATTAGGTTCAAAGGGAAGATCA 58.211 36.000 0.00 0.00 43.64 2.92
2220 6204 7.440523 TCTTGAAGCTTCTTGAATTAGGTTC 57.559 36.000 26.09 9.24 43.25 3.62
2221 6205 7.887495 AGATCTTGAAGCTTCTTGAATTAGGTT 59.113 33.333 26.09 8.14 32.77 3.50
2222 6206 7.401246 AGATCTTGAAGCTTCTTGAATTAGGT 58.599 34.615 26.09 8.92 0.00 3.08
2223 6207 7.862512 AGATCTTGAAGCTTCTTGAATTAGG 57.137 36.000 26.09 5.81 0.00 2.69
2224 6208 8.115520 CGAAGATCTTGAAGCTTCTTGAATTAG 58.884 37.037 26.09 16.78 46.12 1.73
2225 6209 7.413438 GCGAAGATCTTGAAGCTTCTTGAATTA 60.413 37.037 26.09 2.03 46.12 1.40
2226 6210 6.622462 GCGAAGATCTTGAAGCTTCTTGAATT 60.622 38.462 26.09 19.56 46.12 2.17
2227 6211 5.163774 GCGAAGATCTTGAAGCTTCTTGAAT 60.164 40.000 26.09 14.31 46.12 2.57
2228 6212 4.153117 GCGAAGATCTTGAAGCTTCTTGAA 59.847 41.667 26.09 12.14 46.12 2.69
2229 6213 3.681897 GCGAAGATCTTGAAGCTTCTTGA 59.318 43.478 26.09 22.03 46.12 3.02
2230 6214 3.434641 TGCGAAGATCTTGAAGCTTCTTG 59.565 43.478 26.09 17.99 46.12 3.02
2231 6215 3.668447 TGCGAAGATCTTGAAGCTTCTT 58.332 40.909 26.09 11.71 46.12 2.52
2232 6216 3.325293 TGCGAAGATCTTGAAGCTTCT 57.675 42.857 26.09 6.84 46.12 2.85
2233 6217 4.808364 ACTATGCGAAGATCTTGAAGCTTC 59.192 41.667 19.89 19.89 45.10 3.86
2234 6218 4.764172 ACTATGCGAAGATCTTGAAGCTT 58.236 39.130 14.00 14.75 35.97 3.74
2235 6219 4.099266 AGACTATGCGAAGATCTTGAAGCT 59.901 41.667 14.00 8.11 0.00 3.74
2236 6220 4.208873 CAGACTATGCGAAGATCTTGAAGC 59.791 45.833 14.00 15.30 0.00 3.86
2237 6221 5.347342 ACAGACTATGCGAAGATCTTGAAG 58.653 41.667 14.00 5.29 0.00 3.02
2238 6222 5.126222 AGACAGACTATGCGAAGATCTTGAA 59.874 40.000 14.00 0.13 0.00 2.69
2239 6223 4.642437 AGACAGACTATGCGAAGATCTTGA 59.358 41.667 14.00 0.00 0.00 3.02
2240 6224 4.930963 AGACAGACTATGCGAAGATCTTG 58.069 43.478 14.00 6.62 0.00 3.02
2241 6225 4.037446 GGAGACAGACTATGCGAAGATCTT 59.963 45.833 7.95 7.95 0.00 2.40
2242 6226 3.568007 GGAGACAGACTATGCGAAGATCT 59.432 47.826 0.00 0.00 0.00 2.75
2243 6227 3.316588 TGGAGACAGACTATGCGAAGATC 59.683 47.826 0.00 0.00 35.01 2.75
2244 6228 3.067461 GTGGAGACAGACTATGCGAAGAT 59.933 47.826 0.00 0.00 44.46 2.40
2245 6229 2.423892 GTGGAGACAGACTATGCGAAGA 59.576 50.000 0.00 0.00 44.46 2.87
2246 6230 2.480416 GGTGGAGACAGACTATGCGAAG 60.480 54.545 0.00 0.00 44.46 3.79
2247 6231 1.476891 GGTGGAGACAGACTATGCGAA 59.523 52.381 0.00 0.00 44.46 4.70
2248 6232 1.103803 GGTGGAGACAGACTATGCGA 58.896 55.000 0.00 0.00 44.46 5.10
2249 6233 1.107114 AGGTGGAGACAGACTATGCG 58.893 55.000 0.00 0.00 44.46 4.73
2250 6234 1.137872 CCAGGTGGAGACAGACTATGC 59.862 57.143 0.00 0.00 44.46 3.14
2251 6235 2.739943 TCCAGGTGGAGACAGACTATG 58.260 52.381 0.00 0.00 44.46 2.23
2263 6247 0.988145 TCCCTTGCCTATCCAGGTGG 60.988 60.000 0.00 0.00 44.68 4.61
2264 6248 0.471617 CTCCCTTGCCTATCCAGGTG 59.528 60.000 0.00 0.00 44.68 4.00
2265 6249 0.044855 ACTCCCTTGCCTATCCAGGT 59.955 55.000 0.00 0.00 44.68 4.00
2266 6250 0.761802 GACTCCCTTGCCTATCCAGG 59.238 60.000 0.00 0.00 45.77 4.45
2267 6251 1.799933 AGACTCCCTTGCCTATCCAG 58.200 55.000 0.00 0.00 0.00 3.86
2268 6252 2.247635 ACTAGACTCCCTTGCCTATCCA 59.752 50.000 0.00 0.00 0.00 3.41
2269 6253 2.630580 CACTAGACTCCCTTGCCTATCC 59.369 54.545 0.00 0.00 0.00 2.59
2270 6254 2.036604 GCACTAGACTCCCTTGCCTATC 59.963 54.545 0.00 0.00 0.00 2.08
2271 6255 2.043227 GCACTAGACTCCCTTGCCTAT 58.957 52.381 0.00 0.00 0.00 2.57
2272 6256 1.273041 TGCACTAGACTCCCTTGCCTA 60.273 52.381 0.00 0.00 29.63 3.93
2273 6257 0.545309 TGCACTAGACTCCCTTGCCT 60.545 55.000 0.00 0.00 29.63 4.75
2274 6258 0.324943 TTGCACTAGACTCCCTTGCC 59.675 55.000 0.00 0.00 29.63 4.52
2275 6259 1.443802 GTTGCACTAGACTCCCTTGC 58.556 55.000 0.00 0.00 0.00 4.01
2276 6260 1.714794 CGTTGCACTAGACTCCCTTG 58.285 55.000 0.00 0.00 0.00 3.61
2277 6261 0.037232 GCGTTGCACTAGACTCCCTT 60.037 55.000 0.00 0.00 0.00 3.95
2278 6262 1.592223 GCGTTGCACTAGACTCCCT 59.408 57.895 0.00 0.00 0.00 4.20
2279 6263 1.448013 GGCGTTGCACTAGACTCCC 60.448 63.158 0.00 0.00 0.00 4.30
2280 6264 0.320421 TTGGCGTTGCACTAGACTCC 60.320 55.000 0.00 0.00 0.00 3.85
2281 6265 0.790814 GTTGGCGTTGCACTAGACTC 59.209 55.000 0.00 0.00 0.00 3.36
2282 6266 0.393077 AGTTGGCGTTGCACTAGACT 59.607 50.000 0.00 0.00 0.00 3.24
2283 6267 1.194772 GAAGTTGGCGTTGCACTAGAC 59.805 52.381 0.00 0.00 0.00 2.59
2284 6268 1.202592 TGAAGTTGGCGTTGCACTAGA 60.203 47.619 0.00 0.00 0.00 2.43
2285 6269 1.195448 CTGAAGTTGGCGTTGCACTAG 59.805 52.381 0.00 0.00 0.00 2.57
2286 6270 1.225855 CTGAAGTTGGCGTTGCACTA 58.774 50.000 0.00 0.00 0.00 2.74
2287 6271 1.447317 CCTGAAGTTGGCGTTGCACT 61.447 55.000 0.00 0.00 0.00 4.40
2288 6272 1.008538 CCTGAAGTTGGCGTTGCAC 60.009 57.895 0.00 0.00 0.00 4.57
2289 6273 2.844451 GCCTGAAGTTGGCGTTGCA 61.844 57.895 0.00 0.00 41.03 4.08
2290 6274 2.050077 GCCTGAAGTTGGCGTTGC 60.050 61.111 0.00 0.00 41.03 4.17
2305 6289 4.803426 CGGCGTGTGAGGAGAGCC 62.803 72.222 0.00 0.00 44.00 4.70
2306 6290 1.725557 TATCGGCGTGTGAGGAGAGC 61.726 60.000 6.85 0.00 0.00 4.09
2307 6291 0.309302 CTATCGGCGTGTGAGGAGAG 59.691 60.000 6.85 0.00 0.00 3.20
2308 6292 1.725557 GCTATCGGCGTGTGAGGAGA 61.726 60.000 6.85 0.00 0.00 3.71
2309 6293 1.299468 GCTATCGGCGTGTGAGGAG 60.299 63.158 6.85 0.00 0.00 3.69
2310 6294 2.805546 GCTATCGGCGTGTGAGGA 59.194 61.111 6.85 0.00 0.00 3.71
2318 6302 1.448119 TGGAGACAGAGCTATCGGCG 61.448 60.000 0.00 0.00 40.32 6.46
2319 6303 0.747255 TTGGAGACAGAGCTATCGGC 59.253 55.000 0.00 0.00 44.54 5.54
2320 6304 2.865670 GCATTGGAGACAGAGCTATCGG 60.866 54.545 0.00 0.00 44.54 4.18
2321 6305 2.402305 GCATTGGAGACAGAGCTATCG 58.598 52.381 0.00 0.00 44.54 2.92
2322 6306 2.402305 CGCATTGGAGACAGAGCTATC 58.598 52.381 0.00 0.00 44.54 2.08
2323 6307 1.539929 GCGCATTGGAGACAGAGCTAT 60.540 52.381 0.30 0.00 44.54 2.97
2324 6308 0.179100 GCGCATTGGAGACAGAGCTA 60.179 55.000 0.30 0.00 44.54 3.32
2325 6309 1.449246 GCGCATTGGAGACAGAGCT 60.449 57.895 0.30 0.00 44.54 4.09
2326 6310 2.467826 GGCGCATTGGAGACAGAGC 61.468 63.158 10.83 0.00 44.54 4.09
2327 6311 1.817099 GGGCGCATTGGAGACAGAG 60.817 63.158 10.83 0.00 44.54 3.35
2328 6312 2.268920 GGGCGCATTGGAGACAGA 59.731 61.111 10.83 0.00 44.54 3.41
2329 6313 3.197790 CGGGCGCATTGGAGACAG 61.198 66.667 10.83 0.00 44.54 3.51
2330 6314 4.776322 CCGGGCGCATTGGAGACA 62.776 66.667 10.83 0.00 39.83 3.41
2346 6330 1.227973 GATGGATCCGGAACTGCCC 60.228 63.158 9.01 5.74 0.00 5.36
2347 6331 0.533755 CAGATGGATCCGGAACTGCC 60.534 60.000 9.01 8.73 0.00 4.85
2348 6332 1.162800 GCAGATGGATCCGGAACTGC 61.163 60.000 24.87 24.87 42.44 4.40
2349 6333 0.178767 TGCAGATGGATCCGGAACTG 59.821 55.000 9.01 13.97 0.00 3.16
2350 6334 1.135094 ATGCAGATGGATCCGGAACT 58.865 50.000 9.01 0.00 0.00 3.01
2351 6335 1.233019 CATGCAGATGGATCCGGAAC 58.767 55.000 9.01 5.41 0.00 3.62
2352 6336 0.535780 GCATGCAGATGGATCCGGAA 60.536 55.000 14.21 0.00 0.00 4.30
2353 6337 1.071987 GCATGCAGATGGATCCGGA 59.928 57.895 14.21 6.61 0.00 5.14
2354 6338 1.072678 AGCATGCAGATGGATCCGG 59.927 57.895 21.98 0.00 0.00 5.14
2355 6339 2.244946 CAGCATGCAGATGGATCCG 58.755 57.895 21.98 0.00 0.00 4.18
2374 6358 2.281498 CACACATGTGCGGTTATCTACG 59.719 50.000 25.68 0.00 39.39 3.51
2375 6359 3.517602 TCACACATGTGCGGTTATCTAC 58.482 45.455 25.68 0.00 45.25 2.59
2376 6360 3.878160 TCACACATGTGCGGTTATCTA 57.122 42.857 25.68 0.00 45.25 1.98
2377 6361 2.760634 TCACACATGTGCGGTTATCT 57.239 45.000 25.68 0.17 45.25 1.98
2378 6362 2.935849 TGATCACACATGTGCGGTTATC 59.064 45.455 25.68 18.85 45.25 1.75
2379 6363 2.677836 GTGATCACACATGTGCGGTTAT 59.322 45.455 25.68 11.56 45.25 1.89
2380 6364 2.073056 GTGATCACACATGTGCGGTTA 58.927 47.619 25.68 6.63 45.25 2.85
2381 6365 0.874390 GTGATCACACATGTGCGGTT 59.126 50.000 25.68 12.86 45.25 4.44
2382 6366 1.291184 CGTGATCACACATGTGCGGT 61.291 55.000 25.68 13.16 46.20 5.68
2383 6367 1.013524 TCGTGATCACACATGTGCGG 61.014 55.000 25.68 17.67 46.20 5.69
2384 6368 0.789601 TTCGTGATCACACATGTGCG 59.210 50.000 25.68 16.84 46.20 5.34
2385 6369 1.129251 CCTTCGTGATCACACATGTGC 59.871 52.381 25.68 9.88 46.20 4.57
2386 6370 2.687370 TCCTTCGTGATCACACATGTG 58.313 47.619 24.25 24.25 46.20 3.21
2387 6371 3.055891 TGATCCTTCGTGATCACACATGT 60.056 43.478 24.93 6.51 44.65 3.21
2388 6372 3.524541 TGATCCTTCGTGATCACACATG 58.475 45.455 24.93 12.39 44.65 3.21
2389 6373 3.893326 TGATCCTTCGTGATCACACAT 57.107 42.857 24.93 8.84 44.65 3.21
2395 6379 2.927014 GCCGGTATGATCCTTCGTGATC 60.927 54.545 1.90 5.71 41.27 2.92
2396 6380 1.000955 GCCGGTATGATCCTTCGTGAT 59.999 52.381 1.90 0.00 0.00 3.06
2397 6381 0.387929 GCCGGTATGATCCTTCGTGA 59.612 55.000 1.90 0.00 0.00 4.35
2398 6382 0.104120 TGCCGGTATGATCCTTCGTG 59.896 55.000 1.90 0.00 0.00 4.35
2399 6383 1.000955 GATGCCGGTATGATCCTTCGT 59.999 52.381 10.77 0.00 0.00 3.85
2400 6384 1.714794 GATGCCGGTATGATCCTTCG 58.285 55.000 10.77 0.00 0.00 3.79
2401 6385 1.000955 ACGATGCCGGTATGATCCTTC 59.999 52.381 10.77 0.00 40.78 3.46
2402 6386 1.000955 GACGATGCCGGTATGATCCTT 59.999 52.381 10.77 0.00 40.78 3.36
2403 6387 0.603569 GACGATGCCGGTATGATCCT 59.396 55.000 10.77 0.00 40.78 3.24
2404 6388 0.389948 GGACGATGCCGGTATGATCC 60.390 60.000 10.77 12.66 40.78 3.36
2405 6389 3.123674 GGACGATGCCGGTATGATC 57.876 57.895 10.77 6.92 40.78 2.92
2414 6398 0.387929 TAGATGGAACGGACGATGCC 59.612 55.000 0.00 0.00 0.00 4.40
2415 6399 1.488527 GTAGATGGAACGGACGATGC 58.511 55.000 0.00 0.00 0.00 3.91
2416 6400 1.681793 AGGTAGATGGAACGGACGATG 59.318 52.381 0.00 0.00 0.00 3.84
2417 6401 1.681793 CAGGTAGATGGAACGGACGAT 59.318 52.381 0.00 0.00 0.00 3.73
2418 6402 1.100510 CAGGTAGATGGAACGGACGA 58.899 55.000 0.00 0.00 0.00 4.20
2419 6403 0.815734 ACAGGTAGATGGAACGGACG 59.184 55.000 0.00 0.00 0.00 4.79
2420 6404 2.756760 TGTACAGGTAGATGGAACGGAC 59.243 50.000 0.00 0.00 0.00 4.79
2421 6405 3.090210 TGTACAGGTAGATGGAACGGA 57.910 47.619 0.00 0.00 0.00 4.69
2422 6406 3.880047 TTGTACAGGTAGATGGAACGG 57.120 47.619 0.00 0.00 0.00 4.44
2423 6407 3.611113 CGTTTGTACAGGTAGATGGAACG 59.389 47.826 8.68 8.68 0.00 3.95
2424 6408 4.813027 TCGTTTGTACAGGTAGATGGAAC 58.187 43.478 0.00 0.00 0.00 3.62
2425 6409 5.232463 GTTCGTTTGTACAGGTAGATGGAA 58.768 41.667 0.00 0.00 0.00 3.53
2426 6410 4.322198 GGTTCGTTTGTACAGGTAGATGGA 60.322 45.833 0.00 0.00 0.00 3.41
2427 6411 3.930848 GGTTCGTTTGTACAGGTAGATGG 59.069 47.826 0.00 0.00 0.00 3.51
2428 6412 3.611113 CGGTTCGTTTGTACAGGTAGATG 59.389 47.826 0.00 0.00 0.00 2.90
2429 6413 3.256631 ACGGTTCGTTTGTACAGGTAGAT 59.743 43.478 0.00 0.00 36.35 1.98
2430 6414 2.622942 ACGGTTCGTTTGTACAGGTAGA 59.377 45.455 0.00 0.00 36.35 2.59
2431 6415 2.727798 CACGGTTCGTTTGTACAGGTAG 59.272 50.000 0.00 0.00 38.32 3.18
2432 6416 2.360483 TCACGGTTCGTTTGTACAGGTA 59.640 45.455 0.00 0.00 38.32 3.08
2433 6417 1.136695 TCACGGTTCGTTTGTACAGGT 59.863 47.619 0.00 0.00 38.32 4.00
2434 6418 1.855513 TCACGGTTCGTTTGTACAGG 58.144 50.000 0.00 0.00 38.32 4.00
2435 6419 3.929417 TTTCACGGTTCGTTTGTACAG 57.071 42.857 0.00 0.00 38.32 2.74
2436 6420 4.879104 ATTTTCACGGTTCGTTTGTACA 57.121 36.364 0.00 0.00 38.32 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.