Multiple sequence alignment - TraesCS1B01G360900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G360900 chr1B 100.000 3422 0 0 1 3422 589226984 589223563 0.000000e+00 6320.0
1 TraesCS1B01G360900 chr1B 88.008 1501 174 5 964 2459 457024855 457026354 0.000000e+00 1770.0
2 TraesCS1B01G360900 chr1D 94.318 1707 74 5 986 2673 435926692 435928394 0.000000e+00 2593.0
3 TraesCS1B01G360900 chr1D 88.290 1503 165 7 967 2459 341373564 341375065 0.000000e+00 1790.0
4 TraesCS1B01G360900 chr1D 89.526 401 31 6 1 397 363731287 363730894 6.590000e-137 497.0
5 TraesCS1B01G360900 chr1D 78.283 594 89 14 2833 3422 435924685 435924128 2.530000e-91 346.0
6 TraesCS1B01G360900 chr1D 92.405 158 9 3 687 844 435926478 435926632 4.440000e-54 222.0
7 TraesCS1B01G360900 chr1D 84.091 176 20 7 2569 2744 435925613 435925446 2.730000e-36 163.0
8 TraesCS1B01G360900 chr1A 90.789 1748 86 19 982 2699 533155904 533154202 0.000000e+00 2266.0
9 TraesCS1B01G360900 chr1A 88.267 1500 167 8 968 2459 441032329 441033827 0.000000e+00 1786.0
10 TraesCS1B01G360900 chr1A 89.824 737 63 8 2696 3422 533154157 533153423 0.000000e+00 935.0
11 TraesCS1B01G360900 chr1A 91.696 289 12 6 687 972 533156987 533156708 1.150000e-104 390.0
12 TraesCS1B01G360900 chr7B 78.683 1412 258 28 1010 2398 45176949 45175558 0.000000e+00 900.0
13 TraesCS1B01G360900 chr7B 88.537 410 38 6 1 407 438940604 438941007 3.970000e-134 488.0
14 TraesCS1B01G360900 chr7B 88.350 412 39 5 1 409 74298517 74298112 1.430000e-133 486.0
15 TraesCS1B01G360900 chr2A 76.689 1214 229 38 1196 2388 722061987 722060807 2.900000e-175 625.0
16 TraesCS1B01G360900 chr2D 76.471 1224 238 38 1184 2388 587186367 587185175 1.350000e-173 619.0
17 TraesCS1B01G360900 chr2B 75.572 1224 249 36 1184 2388 708994229 708993037 2.980000e-155 558.0
18 TraesCS1B01G360900 chr4A 90.732 410 28 5 1 408 698002865 698002464 3.890000e-149 538.0
19 TraesCS1B01G360900 chr7D 90.842 404 25 6 1 401 255781498 255781104 6.500000e-147 531.0
20 TraesCS1B01G360900 chr5D 89.877 405 30 6 1 401 389029248 389028851 8.470000e-141 510.0
21 TraesCS1B01G360900 chr7A 88.861 404 35 5 1 401 75208880 75209276 3.970000e-134 488.0
22 TraesCS1B01G360900 chr5A 89.223 399 30 6 1 395 687862660 687863049 1.430000e-133 486.0
23 TraesCS1B01G360900 chr4D 88.452 407 35 6 1 401 386468080 386467680 6.640000e-132 481.0
24 TraesCS1B01G360900 chr6B 90.196 51 5 0 1781 1831 56006754 56006704 2.200000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G360900 chr1B 589223563 589226984 3421 True 6320.0 6320 100.000000 1 3422 1 chr1B.!!$R1 3421
1 TraesCS1B01G360900 chr1B 457024855 457026354 1499 False 1770.0 1770 88.008000 964 2459 1 chr1B.!!$F1 1495
2 TraesCS1B01G360900 chr1D 341373564 341375065 1501 False 1790.0 1790 88.290000 967 2459 1 chr1D.!!$F1 1492
3 TraesCS1B01G360900 chr1D 435926478 435928394 1916 False 1407.5 2593 93.361500 687 2673 2 chr1D.!!$F2 1986
4 TraesCS1B01G360900 chr1D 435924128 435925613 1485 True 254.5 346 81.187000 2569 3422 2 chr1D.!!$R2 853
5 TraesCS1B01G360900 chr1A 441032329 441033827 1498 False 1786.0 1786 88.267000 968 2459 1 chr1A.!!$F1 1491
6 TraesCS1B01G360900 chr1A 533153423 533156987 3564 True 1197.0 2266 90.769667 687 3422 3 chr1A.!!$R1 2735
7 TraesCS1B01G360900 chr7B 45175558 45176949 1391 True 900.0 900 78.683000 1010 2398 1 chr7B.!!$R1 1388
8 TraesCS1B01G360900 chr2A 722060807 722061987 1180 True 625.0 625 76.689000 1196 2388 1 chr2A.!!$R1 1192
9 TraesCS1B01G360900 chr2D 587185175 587186367 1192 True 619.0 619 76.471000 1184 2388 1 chr2D.!!$R1 1204
10 TraesCS1B01G360900 chr2B 708993037 708994229 1192 True 558.0 558 75.572000 1184 2388 1 chr2B.!!$R1 1204

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.034059 CCGCCGATCTAAAGCCAGAT 59.966 55.0 0.0 0.0 37.99 2.90 F
643 644 0.034337 TTCACTGTTACGCCTCACCC 59.966 55.0 0.0 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 2312 0.841961 CCATGCCTTCCATCTCCTCA 59.158 55.0 0.0 0.0 29.71 3.86 R
2574 3464 0.104409 ACCAGGTCAGGAGAAAGGGT 60.104 55.0 0.0 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.201523 TGGCTACACCGACCAGAA 57.798 55.556 0.00 0.00 43.94 3.02
18 19 1.669440 TGGCTACACCGACCAGAAC 59.331 57.895 0.00 0.00 43.94 3.01
19 20 1.116536 TGGCTACACCGACCAGAACA 61.117 55.000 0.00 0.00 43.94 3.18
20 21 0.389948 GGCTACACCGACCAGAACAG 60.390 60.000 0.00 0.00 0.00 3.16
21 22 0.601558 GCTACACCGACCAGAACAGA 59.398 55.000 0.00 0.00 0.00 3.41
22 23 1.204941 GCTACACCGACCAGAACAGAT 59.795 52.381 0.00 0.00 0.00 2.90
23 24 2.353803 GCTACACCGACCAGAACAGATT 60.354 50.000 0.00 0.00 0.00 2.40
24 25 2.930826 ACACCGACCAGAACAGATTT 57.069 45.000 0.00 0.00 0.00 2.17
25 26 2.494059 ACACCGACCAGAACAGATTTG 58.506 47.619 0.00 0.00 0.00 2.32
26 27 1.197721 CACCGACCAGAACAGATTTGC 59.802 52.381 0.00 0.00 0.00 3.68
27 28 0.804989 CCGACCAGAACAGATTTGCC 59.195 55.000 0.00 0.00 0.00 4.52
28 29 1.522668 CGACCAGAACAGATTTGCCA 58.477 50.000 0.00 0.00 0.00 4.92
29 30 2.086869 CGACCAGAACAGATTTGCCAT 58.913 47.619 0.00 0.00 0.00 4.40
30 31 2.159476 CGACCAGAACAGATTTGCCATG 60.159 50.000 0.00 0.00 0.00 3.66
31 32 2.165030 GACCAGAACAGATTTGCCATGG 59.835 50.000 7.63 7.63 0.00 3.66
32 33 1.479323 CCAGAACAGATTTGCCATGGG 59.521 52.381 15.13 0.00 0.00 4.00
33 34 2.173519 CAGAACAGATTTGCCATGGGT 58.826 47.619 15.13 0.00 0.00 4.51
34 35 2.094390 CAGAACAGATTTGCCATGGGTG 60.094 50.000 15.13 0.00 0.00 4.61
35 36 0.609662 AACAGATTTGCCATGGGTGC 59.390 50.000 15.13 0.00 0.00 5.01
36 37 1.259840 ACAGATTTGCCATGGGTGCC 61.260 55.000 15.13 0.00 0.00 5.01
37 38 2.053865 AGATTTGCCATGGGTGCCG 61.054 57.895 15.13 0.00 0.00 5.69
38 39 3.721557 GATTTGCCATGGGTGCCGC 62.722 63.158 15.13 0.00 0.00 6.53
52 53 4.641645 CCGCCAAGCAGTCCACCA 62.642 66.667 0.00 0.00 0.00 4.17
53 54 2.594303 CGCCAAGCAGTCCACCAA 60.594 61.111 0.00 0.00 0.00 3.67
54 55 2.620112 CGCCAAGCAGTCCACCAAG 61.620 63.158 0.00 0.00 0.00 3.61
55 56 2.924105 GCCAAGCAGTCCACCAAGC 61.924 63.158 0.00 0.00 0.00 4.01
56 57 2.270986 CCAAGCAGTCCACCAAGCC 61.271 63.158 0.00 0.00 0.00 4.35
57 58 2.116125 AAGCAGTCCACCAAGCCC 59.884 61.111 0.00 0.00 0.00 5.19
58 59 2.464403 AAGCAGTCCACCAAGCCCT 61.464 57.895 0.00 0.00 0.00 5.19
59 60 2.011617 AAGCAGTCCACCAAGCCCTT 62.012 55.000 0.00 0.00 0.00 3.95
60 61 2.270986 GCAGTCCACCAAGCCCTTG 61.271 63.158 1.05 1.05 40.13 3.61
61 62 1.455849 CAGTCCACCAAGCCCTTGA 59.544 57.895 9.50 0.00 42.93 3.02
62 63 0.890996 CAGTCCACCAAGCCCTTGAC 60.891 60.000 9.50 0.30 42.93 3.18
63 64 1.966451 GTCCACCAAGCCCTTGACG 60.966 63.158 9.50 0.56 42.93 4.35
64 65 3.365265 CCACCAAGCCCTTGACGC 61.365 66.667 9.50 0.00 42.93 5.19
65 66 3.365265 CACCAAGCCCTTGACGCC 61.365 66.667 9.50 0.00 42.93 5.68
80 81 3.338676 GCCGCCGCCGATCTAAAG 61.339 66.667 0.00 0.00 36.29 1.85
81 82 3.338676 CCGCCGCCGATCTAAAGC 61.339 66.667 0.00 0.00 36.29 3.51
82 83 3.338676 CGCCGCCGATCTAAAGCC 61.339 66.667 0.00 0.00 36.29 4.35
83 84 2.203015 GCCGCCGATCTAAAGCCA 60.203 61.111 0.00 0.00 0.00 4.75
84 85 2.247437 GCCGCCGATCTAAAGCCAG 61.247 63.158 0.00 0.00 0.00 4.85
85 86 1.441729 CCGCCGATCTAAAGCCAGA 59.558 57.895 0.00 0.00 0.00 3.86
86 87 0.034059 CCGCCGATCTAAAGCCAGAT 59.966 55.000 0.00 0.00 37.99 2.90
87 88 1.143305 CGCCGATCTAAAGCCAGATG 58.857 55.000 0.00 0.00 35.37 2.90
88 89 1.269778 CGCCGATCTAAAGCCAGATGA 60.270 52.381 0.00 0.00 35.37 2.92
89 90 2.139118 GCCGATCTAAAGCCAGATGAC 58.861 52.381 0.00 0.00 35.37 3.06
90 91 2.483714 GCCGATCTAAAGCCAGATGACA 60.484 50.000 0.00 0.00 35.37 3.58
91 92 3.805108 GCCGATCTAAAGCCAGATGACAT 60.805 47.826 0.00 0.00 35.37 3.06
92 93 3.744942 CCGATCTAAAGCCAGATGACATG 59.255 47.826 0.00 0.00 35.37 3.21
93 94 3.186001 CGATCTAAAGCCAGATGACATGC 59.814 47.826 0.00 0.00 35.37 4.06
94 95 2.923121 TCTAAAGCCAGATGACATGCC 58.077 47.619 0.00 0.00 0.00 4.40
95 96 1.600957 CTAAAGCCAGATGACATGCCG 59.399 52.381 0.00 0.00 0.00 5.69
96 97 1.660560 AAAGCCAGATGACATGCCGC 61.661 55.000 0.00 0.00 0.00 6.53
97 98 3.589881 GCCAGATGACATGCCGCC 61.590 66.667 0.00 0.00 0.00 6.13
98 99 3.274586 CCAGATGACATGCCGCCG 61.275 66.667 0.00 0.00 0.00 6.46
99 100 2.202919 CAGATGACATGCCGCCGA 60.203 61.111 0.00 0.00 0.00 5.54
100 101 2.202932 AGATGACATGCCGCCGAC 60.203 61.111 0.00 0.00 0.00 4.79
101 102 3.272334 GATGACATGCCGCCGACC 61.272 66.667 0.00 0.00 0.00 4.79
133 134 4.598894 CCCGATCCAGGCGAGCTG 62.599 72.222 0.00 0.00 0.00 4.24
163 164 3.470888 CCCCGTGGCCTGAGGTAG 61.471 72.222 3.32 0.00 0.00 3.18
171 172 3.155167 CCTGAGGTAGGGCCGACC 61.155 72.222 26.63 26.63 43.33 4.79
172 173 3.528370 CTGAGGTAGGGCCGACCG 61.528 72.222 27.24 11.95 46.96 4.79
198 199 3.774702 GTCGAAGCCAACGCCGTC 61.775 66.667 0.00 0.00 34.57 4.79
205 206 2.735478 CCAACGCCGTCGCTTGTA 60.735 61.111 0.00 0.00 39.84 2.41
206 207 2.726691 CCAACGCCGTCGCTTGTAG 61.727 63.158 0.00 0.00 39.84 2.74
207 208 1.731613 CAACGCCGTCGCTTGTAGA 60.732 57.895 0.00 0.00 39.84 2.59
208 209 1.076533 CAACGCCGTCGCTTGTAGAT 61.077 55.000 0.00 0.00 39.84 1.98
209 210 0.389426 AACGCCGTCGCTTGTAGATT 60.389 50.000 0.00 0.00 39.84 2.40
210 211 1.076533 ACGCCGTCGCTTGTAGATTG 61.077 55.000 0.00 0.00 39.84 2.67
211 212 1.752501 CGCCGTCGCTTGTAGATTGG 61.753 60.000 0.00 0.00 0.00 3.16
212 213 2.006772 CCGTCGCTTGTAGATTGGC 58.993 57.895 0.00 0.00 0.00 4.52
213 214 1.429148 CCGTCGCTTGTAGATTGGCC 61.429 60.000 0.00 0.00 0.00 5.36
214 215 0.460284 CGTCGCTTGTAGATTGGCCT 60.460 55.000 3.32 0.00 0.00 5.19
215 216 1.291132 GTCGCTTGTAGATTGGCCTC 58.709 55.000 3.32 0.00 0.00 4.70
216 217 0.901827 TCGCTTGTAGATTGGCCTCA 59.098 50.000 3.32 0.00 0.00 3.86
217 218 1.009829 CGCTTGTAGATTGGCCTCAC 58.990 55.000 3.32 0.00 0.00 3.51
218 219 1.383523 GCTTGTAGATTGGCCTCACC 58.616 55.000 3.32 0.00 39.84 4.02
219 220 1.065126 GCTTGTAGATTGGCCTCACCT 60.065 52.381 3.32 0.00 40.22 4.00
220 221 2.911484 CTTGTAGATTGGCCTCACCTC 58.089 52.381 3.32 0.00 40.22 3.85
221 222 1.204146 TGTAGATTGGCCTCACCTCC 58.796 55.000 3.32 0.00 40.22 4.30
222 223 1.204146 GTAGATTGGCCTCACCTCCA 58.796 55.000 3.32 0.00 40.22 3.86
223 224 1.134371 GTAGATTGGCCTCACCTCCAC 60.134 57.143 3.32 0.00 40.22 4.02
224 225 1.450312 GATTGGCCTCACCTCCACG 60.450 63.158 3.32 0.00 40.22 4.94
225 226 3.628646 ATTGGCCTCACCTCCACGC 62.629 63.158 3.32 0.00 40.22 5.34
227 228 4.101448 GGCCTCACCTCCACGCAT 62.101 66.667 0.00 0.00 34.51 4.73
228 229 2.821366 GCCTCACCTCCACGCATG 60.821 66.667 0.00 0.00 0.00 4.06
229 230 2.665000 CCTCACCTCCACGCATGT 59.335 61.111 0.00 0.00 0.00 3.21
230 231 1.003355 CCTCACCTCCACGCATGTT 60.003 57.895 0.00 0.00 0.00 2.71
231 232 1.300971 CCTCACCTCCACGCATGTTG 61.301 60.000 0.00 0.00 0.00 3.33
232 233 1.300971 CTCACCTCCACGCATGTTGG 61.301 60.000 8.76 8.76 0.00 3.77
233 234 2.034066 ACCTCCACGCATGTTGGG 59.966 61.111 13.70 4.38 36.28 4.12
234 235 2.751436 CCTCCACGCATGTTGGGG 60.751 66.667 13.70 11.01 34.28 4.96
235 236 2.034066 CTCCACGCATGTTGGGGT 59.966 61.111 13.70 0.00 34.28 4.95
236 237 2.033448 TCCACGCATGTTGGGGTC 59.967 61.111 13.70 0.00 34.28 4.46
237 238 3.061848 CCACGCATGTTGGGGTCC 61.062 66.667 7.44 0.00 34.28 4.46
238 239 3.061848 CACGCATGTTGGGGTCCC 61.062 66.667 0.00 0.00 34.28 4.46
239 240 4.715523 ACGCATGTTGGGGTCCCG 62.716 66.667 0.48 0.00 39.42 5.14
242 243 4.358841 CATGTTGGGGTCCCGCCA 62.359 66.667 0.48 0.00 44.70 5.69
243 244 4.360405 ATGTTGGGGTCCCGCCAC 62.360 66.667 0.48 0.00 46.01 5.01
270 271 3.855853 GCGGGAGGGAGGAAGAGC 61.856 72.222 0.00 0.00 0.00 4.09
271 272 3.157949 CGGGAGGGAGGAAGAGCC 61.158 72.222 0.00 0.00 0.00 4.70
272 273 2.770475 GGGAGGGAGGAAGAGCCC 60.770 72.222 0.00 0.00 45.04 5.19
273 274 2.770475 GGAGGGAGGAAGAGCCCC 60.770 72.222 0.00 0.00 45.89 5.80
274 275 2.770475 GAGGGAGGAAGAGCCCCC 60.770 72.222 0.00 0.00 45.89 5.40
275 276 4.806339 AGGGAGGAAGAGCCCCCG 62.806 72.222 0.00 0.00 46.35 5.73
280 281 4.570874 GGAAGAGCCCCCGCCATC 62.571 72.222 0.00 0.00 34.57 3.51
281 282 4.918201 GAAGAGCCCCCGCCATCG 62.918 72.222 0.00 0.00 34.57 3.84
325 326 2.683933 GGCGTCAGGAGGAGGGAA 60.684 66.667 0.00 0.00 32.04 3.97
326 327 2.726351 GGCGTCAGGAGGAGGGAAG 61.726 68.421 0.00 0.00 32.04 3.46
327 328 2.726351 GCGTCAGGAGGAGGGAAGG 61.726 68.421 0.00 0.00 32.04 3.46
328 329 1.000486 CGTCAGGAGGAGGGAAGGA 60.000 63.158 0.00 0.00 0.00 3.36
329 330 1.040339 CGTCAGGAGGAGGGAAGGAG 61.040 65.000 0.00 0.00 0.00 3.69
330 331 0.689412 GTCAGGAGGAGGGAAGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
331 332 0.855855 TCAGGAGGAGGGAAGGAGGA 60.856 60.000 0.00 0.00 0.00 3.71
332 333 0.267356 CAGGAGGAGGGAAGGAGGAT 59.733 60.000 0.00 0.00 0.00 3.24
333 334 0.267356 AGGAGGAGGGAAGGAGGATG 59.733 60.000 0.00 0.00 0.00 3.51
334 335 0.766288 GGAGGAGGGAAGGAGGATGG 60.766 65.000 0.00 0.00 0.00 3.51
335 336 0.766288 GAGGAGGGAAGGAGGATGGG 60.766 65.000 0.00 0.00 0.00 4.00
336 337 2.456443 GGAGGGAAGGAGGATGGGC 61.456 68.421 0.00 0.00 0.00 5.36
337 338 1.385206 GAGGGAAGGAGGATGGGCT 60.385 63.158 0.00 0.00 0.00 5.19
338 339 0.104934 GAGGGAAGGAGGATGGGCTA 60.105 60.000 0.00 0.00 0.00 3.93
339 340 0.104725 AGGGAAGGAGGATGGGCTAG 60.105 60.000 0.00 0.00 0.00 3.42
340 341 1.130678 GGGAAGGAGGATGGGCTAGG 61.131 65.000 0.00 0.00 0.00 3.02
341 342 1.757949 GAAGGAGGATGGGCTAGGC 59.242 63.158 8.00 8.00 0.00 3.93
351 352 4.577246 GGCTAGGCCTCGACAGCG 62.577 72.222 9.68 0.00 46.69 5.18
352 353 4.577246 GCTAGGCCTCGACAGCGG 62.577 72.222 9.68 0.00 38.28 5.52
353 354 2.829003 CTAGGCCTCGACAGCGGA 60.829 66.667 9.68 0.00 38.28 5.54
354 355 2.829003 TAGGCCTCGACAGCGGAG 60.829 66.667 9.68 0.00 38.28 4.63
367 368 4.530857 CGGAGCGGCTAGGGTTGG 62.531 72.222 0.60 0.00 0.00 3.77
368 369 4.176752 GGAGCGGCTAGGGTTGGG 62.177 72.222 0.60 0.00 0.00 4.12
369 370 4.176752 GAGCGGCTAGGGTTGGGG 62.177 72.222 0.60 0.00 0.00 4.96
370 371 4.733725 AGCGGCTAGGGTTGGGGA 62.734 66.667 0.00 0.00 0.00 4.81
371 372 4.176752 GCGGCTAGGGTTGGGGAG 62.177 72.222 0.00 0.00 0.00 4.30
372 373 4.176752 CGGCTAGGGTTGGGGAGC 62.177 72.222 0.00 0.00 0.00 4.70
412 413 2.026879 GGCGACCTGAGCGAGATC 59.973 66.667 0.00 0.00 35.00 2.75
413 414 2.352915 GCGACCTGAGCGAGATCG 60.353 66.667 0.00 0.00 43.27 3.69
414 415 2.329690 CGACCTGAGCGAGATCGG 59.670 66.667 4.18 0.00 40.23 4.18
431 432 9.570488 GCGAGATCGGTCTAAATACTAATTATT 57.430 33.333 0.00 0.00 40.23 1.40
460 461 9.749490 ACATTAAAACGTGTTTAGATACATTCG 57.251 29.630 0.00 0.00 31.63 3.34
461 462 9.749490 CATTAAAACGTGTTTAGATACATTCGT 57.251 29.630 0.00 0.00 33.78 3.85
462 463 9.749490 ATTAAAACGTGTTTAGATACATTCGTG 57.251 29.630 0.00 0.00 33.04 4.35
463 464 6.774354 AAACGTGTTTAGATACATTCGTGT 57.226 33.333 0.00 0.00 33.04 4.49
464 465 6.385537 AACGTGTTTAGATACATTCGTGTC 57.614 37.500 0.00 0.00 33.04 3.67
465 466 4.860907 ACGTGTTTAGATACATTCGTGTCC 59.139 41.667 0.00 0.00 33.96 4.02
466 467 4.860352 CGTGTTTAGATACATTCGTGTCCA 59.140 41.667 0.00 0.00 33.96 4.02
467 468 5.220154 CGTGTTTAGATACATTCGTGTCCAC 60.220 44.000 0.00 0.00 33.96 4.02
468 469 5.636121 GTGTTTAGATACATTCGTGTCCACA 59.364 40.000 0.00 0.00 33.96 4.17
469 470 5.636121 TGTTTAGATACATTCGTGTCCACAC 59.364 40.000 0.00 0.00 43.15 3.82
470 471 3.953712 AGATACATTCGTGTCCACACA 57.046 42.857 10.39 0.00 46.75 3.72
471 472 4.265904 AGATACATTCGTGTCCACACAA 57.734 40.909 10.39 4.37 46.75 3.33
472 473 4.637276 AGATACATTCGTGTCCACACAAA 58.363 39.130 10.39 0.00 46.75 2.83
473 474 5.245531 AGATACATTCGTGTCCACACAAAT 58.754 37.500 10.39 0.47 46.75 2.32
475 476 2.318578 CATTCGTGTCCACACAAATGC 58.681 47.619 9.90 0.00 42.17 3.56
476 477 0.665835 TTCGTGTCCACACAAATGCC 59.334 50.000 10.39 0.00 46.75 4.40
477 478 0.464554 TCGTGTCCACACAAATGCCA 60.465 50.000 10.39 0.00 46.75 4.92
478 479 0.040157 CGTGTCCACACAAATGCCAG 60.040 55.000 10.39 0.00 46.75 4.85
479 480 1.317613 GTGTCCACACAAATGCCAGA 58.682 50.000 4.92 0.00 45.75 3.86
480 481 1.888512 GTGTCCACACAAATGCCAGAT 59.111 47.619 4.92 0.00 45.75 2.90
481 482 3.081061 GTGTCCACACAAATGCCAGATA 58.919 45.455 4.92 0.00 45.75 1.98
482 483 3.505680 GTGTCCACACAAATGCCAGATAA 59.494 43.478 4.92 0.00 45.75 1.75
483 484 3.758023 TGTCCACACAAATGCCAGATAAG 59.242 43.478 0.00 0.00 0.00 1.73
484 485 3.758554 GTCCACACAAATGCCAGATAAGT 59.241 43.478 0.00 0.00 0.00 2.24
485 486 4.941263 GTCCACACAAATGCCAGATAAGTA 59.059 41.667 0.00 0.00 0.00 2.24
486 487 5.414454 GTCCACACAAATGCCAGATAAGTAA 59.586 40.000 0.00 0.00 0.00 2.24
487 488 6.095440 GTCCACACAAATGCCAGATAAGTAAT 59.905 38.462 0.00 0.00 0.00 1.89
488 489 6.663093 TCCACACAAATGCCAGATAAGTAATT 59.337 34.615 0.00 0.00 0.00 1.40
489 490 6.974622 CCACACAAATGCCAGATAAGTAATTC 59.025 38.462 0.00 0.00 0.00 2.17
490 491 6.688385 CACACAAATGCCAGATAAGTAATTCG 59.312 38.462 0.00 0.00 0.00 3.34
491 492 6.183360 ACACAAATGCCAGATAAGTAATTCGG 60.183 38.462 0.00 0.00 0.00 4.30
492 493 5.299279 ACAAATGCCAGATAAGTAATTCGGG 59.701 40.000 0.00 0.00 0.00 5.14
493 494 4.974645 ATGCCAGATAAGTAATTCGGGA 57.025 40.909 0.00 0.00 29.75 5.14
494 495 4.336889 TGCCAGATAAGTAATTCGGGAG 57.663 45.455 0.00 0.00 29.75 4.30
495 496 3.071023 TGCCAGATAAGTAATTCGGGAGG 59.929 47.826 0.00 0.00 29.75 4.30
496 497 3.557264 GCCAGATAAGTAATTCGGGAGGG 60.557 52.174 0.00 0.00 29.75 4.30
497 498 3.901844 CCAGATAAGTAATTCGGGAGGGA 59.098 47.826 0.00 0.00 29.75 4.20
498 499 4.021016 CCAGATAAGTAATTCGGGAGGGAG 60.021 50.000 0.00 0.00 29.75 4.30
499 500 4.021016 CAGATAAGTAATTCGGGAGGGAGG 60.021 50.000 0.00 0.00 0.00 4.30
500 501 2.563039 AAGTAATTCGGGAGGGAGGA 57.437 50.000 0.00 0.00 0.00 3.71
501 502 2.563039 AGTAATTCGGGAGGGAGGAA 57.437 50.000 0.00 0.00 0.00 3.36
502 503 2.399580 AGTAATTCGGGAGGGAGGAAG 58.600 52.381 0.00 0.00 0.00 3.46
503 504 2.117051 GTAATTCGGGAGGGAGGAAGT 58.883 52.381 0.00 0.00 0.00 3.01
504 505 1.205055 AATTCGGGAGGGAGGAAGTC 58.795 55.000 0.00 0.00 0.00 3.01
505 506 0.691413 ATTCGGGAGGGAGGAAGTCC 60.691 60.000 0.00 0.00 46.10 3.85
515 516 3.331252 AGGAAGTCCTAGCATGGCT 57.669 52.632 0.00 0.00 46.48 4.75
516 517 0.835941 AGGAAGTCCTAGCATGGCTG 59.164 55.000 0.00 0.00 46.48 4.85
517 518 3.196469 AGGAAGTCCTAGCATGGCTGC 62.196 57.143 0.00 0.00 46.48 5.25
538 539 3.297134 ACGGAGTGGAATTATGGCATT 57.703 42.857 4.78 0.00 42.51 3.56
539 540 3.631250 ACGGAGTGGAATTATGGCATTT 58.369 40.909 4.78 0.00 42.51 2.32
540 541 4.023291 ACGGAGTGGAATTATGGCATTTT 58.977 39.130 4.78 0.00 42.51 1.82
541 542 4.097892 ACGGAGTGGAATTATGGCATTTTC 59.902 41.667 4.78 9.63 42.51 2.29
542 543 4.097741 CGGAGTGGAATTATGGCATTTTCA 59.902 41.667 4.78 0.00 0.00 2.69
543 544 5.221303 CGGAGTGGAATTATGGCATTTTCAT 60.221 40.000 4.78 0.44 0.00 2.57
544 545 6.218746 GGAGTGGAATTATGGCATTTTCATC 58.781 40.000 4.78 8.75 0.00 2.92
545 546 5.835257 AGTGGAATTATGGCATTTTCATCG 58.165 37.500 4.78 0.00 0.00 3.84
546 547 4.445385 GTGGAATTATGGCATTTTCATCGC 59.555 41.667 4.78 1.86 0.00 4.58
547 548 4.099113 TGGAATTATGGCATTTTCATCGCA 59.901 37.500 4.78 1.07 0.00 5.10
548 549 4.445385 GGAATTATGGCATTTTCATCGCAC 59.555 41.667 4.78 0.00 0.00 5.34
549 550 4.924305 ATTATGGCATTTTCATCGCACT 57.076 36.364 4.78 0.00 0.00 4.40
550 551 6.389830 AATTATGGCATTTTCATCGCACTA 57.610 33.333 4.78 0.00 0.00 2.74
551 552 3.698029 ATGGCATTTTCATCGCACTAC 57.302 42.857 0.00 0.00 0.00 2.73
552 553 2.431454 TGGCATTTTCATCGCACTACA 58.569 42.857 0.00 0.00 0.00 2.74
553 554 2.816672 TGGCATTTTCATCGCACTACAA 59.183 40.909 0.00 0.00 0.00 2.41
554 555 3.254411 TGGCATTTTCATCGCACTACAAA 59.746 39.130 0.00 0.00 0.00 2.83
555 556 4.233789 GGCATTTTCATCGCACTACAAAA 58.766 39.130 0.00 0.00 0.00 2.44
556 557 4.683781 GGCATTTTCATCGCACTACAAAAA 59.316 37.500 0.00 0.00 0.00 1.94
557 558 5.164061 GGCATTTTCATCGCACTACAAAAAG 60.164 40.000 0.00 0.00 0.00 2.27
558 559 5.629020 GCATTTTCATCGCACTACAAAAAGA 59.371 36.000 0.00 0.00 0.00 2.52
559 560 6.308766 GCATTTTCATCGCACTACAAAAAGAT 59.691 34.615 0.00 0.00 0.00 2.40
560 561 7.484641 GCATTTTCATCGCACTACAAAAAGATA 59.515 33.333 0.00 0.00 0.00 1.98
561 562 8.788813 CATTTTCATCGCACTACAAAAAGATAC 58.211 33.333 0.00 0.00 0.00 2.24
562 563 5.696260 TCATCGCACTACAAAAAGATACG 57.304 39.130 0.00 0.00 0.00 3.06
563 564 5.404096 TCATCGCACTACAAAAAGATACGA 58.596 37.500 0.00 0.00 0.00 3.43
564 565 6.040247 TCATCGCACTACAAAAAGATACGAT 58.960 36.000 0.00 0.00 38.17 3.73
565 566 6.533723 TCATCGCACTACAAAAAGATACGATT 59.466 34.615 0.00 0.00 35.74 3.34
566 567 6.327177 TCGCACTACAAAAAGATACGATTC 57.673 37.500 0.00 0.00 0.00 2.52
567 568 5.865013 TCGCACTACAAAAAGATACGATTCA 59.135 36.000 0.00 0.00 0.00 2.57
568 569 5.952064 CGCACTACAAAAAGATACGATTCAC 59.048 40.000 0.00 0.00 0.00 3.18
570 571 6.183360 GCACTACAAAAAGATACGATTCACGA 60.183 38.462 0.00 0.00 45.77 4.35
571 572 7.464178 GCACTACAAAAAGATACGATTCACGAT 60.464 37.037 0.00 0.00 45.77 3.73
572 573 8.380644 CACTACAAAAAGATACGATTCACGATT 58.619 33.333 0.00 0.00 45.77 3.34
573 574 8.932791 ACTACAAAAAGATACGATTCACGATTT 58.067 29.630 0.00 0.00 45.77 2.17
574 575 9.755064 CTACAAAAAGATACGATTCACGATTTT 57.245 29.630 0.00 0.00 45.77 1.82
575 576 8.434870 ACAAAAAGATACGATTCACGATTTTG 57.565 30.769 0.00 0.00 45.77 2.44
576 577 8.073768 ACAAAAAGATACGATTCACGATTTTGT 58.926 29.630 6.90 6.90 45.77 2.83
577 578 9.536558 CAAAAAGATACGATTCACGATTTTGTA 57.463 29.630 0.00 0.00 45.77 2.41
584 585 7.561237 ACGATTCACGATTTTGTAAAATTGG 57.439 32.000 17.28 9.85 45.77 3.16
585 586 6.088883 ACGATTCACGATTTTGTAAAATTGGC 59.911 34.615 17.28 1.47 45.77 4.52
586 587 5.814314 TTCACGATTTTGTAAAATTGGCG 57.186 34.783 17.28 12.41 41.83 5.69
587 588 3.670991 TCACGATTTTGTAAAATTGGCGC 59.329 39.130 17.28 0.00 41.83 6.53
588 589 3.426859 CACGATTTTGTAAAATTGGCGCA 59.573 39.130 10.83 0.00 41.83 6.09
589 590 4.091220 CACGATTTTGTAAAATTGGCGCAT 59.909 37.500 10.83 0.00 41.83 4.73
590 591 4.091220 ACGATTTTGTAAAATTGGCGCATG 59.909 37.500 10.83 0.00 41.83 4.06
591 592 4.091220 CGATTTTGTAAAATTGGCGCATGT 59.909 37.500 10.83 0.00 38.64 3.21
592 593 5.287274 CGATTTTGTAAAATTGGCGCATGTA 59.713 36.000 10.83 0.00 38.64 2.29
593 594 6.019961 CGATTTTGTAAAATTGGCGCATGTAT 60.020 34.615 10.83 0.00 38.64 2.29
594 595 7.166638 CGATTTTGTAAAATTGGCGCATGTATA 59.833 33.333 10.83 0.00 38.64 1.47
595 596 8.885494 ATTTTGTAAAATTGGCGCATGTATAT 57.115 26.923 10.83 0.00 35.16 0.86
596 597 8.709386 TTTTGTAAAATTGGCGCATGTATATT 57.291 26.923 10.83 0.00 0.00 1.28
597 598 8.709386 TTTGTAAAATTGGCGCATGTATATTT 57.291 26.923 10.83 3.44 0.00 1.40
598 599 7.922505 TGTAAAATTGGCGCATGTATATTTC 57.077 32.000 10.83 0.00 0.00 2.17
599 600 7.711846 TGTAAAATTGGCGCATGTATATTTCT 58.288 30.769 10.83 0.56 0.00 2.52
600 601 7.860373 TGTAAAATTGGCGCATGTATATTTCTC 59.140 33.333 10.83 3.55 0.00 2.87
601 602 6.389830 AAATTGGCGCATGTATATTTCTCA 57.610 33.333 10.83 0.00 0.00 3.27
602 603 6.389830 AATTGGCGCATGTATATTTCTCAA 57.610 33.333 10.83 0.00 0.00 3.02
603 604 6.579666 ATTGGCGCATGTATATTTCTCAAT 57.420 33.333 10.83 1.51 0.00 2.57
604 605 5.611796 TGGCGCATGTATATTTCTCAATC 57.388 39.130 10.83 0.00 0.00 2.67
605 606 4.455533 TGGCGCATGTATATTTCTCAATCC 59.544 41.667 10.83 0.00 0.00 3.01
606 607 4.455533 GGCGCATGTATATTTCTCAATCCA 59.544 41.667 10.83 0.00 0.00 3.41
607 608 5.385617 GCGCATGTATATTTCTCAATCCAC 58.614 41.667 0.30 0.00 0.00 4.02
608 609 5.180117 GCGCATGTATATTTCTCAATCCACT 59.820 40.000 0.30 0.00 0.00 4.00
609 610 6.596703 CGCATGTATATTTCTCAATCCACTG 58.403 40.000 0.00 0.00 0.00 3.66
610 611 6.424812 CGCATGTATATTTCTCAATCCACTGA 59.575 38.462 0.00 0.00 0.00 3.41
611 612 7.570140 CGCATGTATATTTCTCAATCCACTGAC 60.570 40.741 0.00 0.00 0.00 3.51
612 613 7.443575 GCATGTATATTTCTCAATCCACTGACT 59.556 37.037 0.00 0.00 0.00 3.41
613 614 9.334947 CATGTATATTTCTCAATCCACTGACTT 57.665 33.333 0.00 0.00 0.00 3.01
614 615 8.948631 TGTATATTTCTCAATCCACTGACTTC 57.051 34.615 0.00 0.00 0.00 3.01
615 616 7.706607 TGTATATTTCTCAATCCACTGACTTCG 59.293 37.037 0.00 0.00 0.00 3.79
616 617 4.336889 TTTCTCAATCCACTGACTTCGT 57.663 40.909 0.00 0.00 0.00 3.85
617 618 3.303881 TCTCAATCCACTGACTTCGTG 57.696 47.619 0.00 0.00 0.00 4.35
618 619 2.628178 TCTCAATCCACTGACTTCGTGT 59.372 45.455 0.00 0.00 0.00 4.49
619 620 3.069586 TCTCAATCCACTGACTTCGTGTT 59.930 43.478 0.00 0.00 0.00 3.32
620 621 3.804036 TCAATCCACTGACTTCGTGTTT 58.196 40.909 0.00 0.00 0.00 2.83
621 622 3.559655 TCAATCCACTGACTTCGTGTTTG 59.440 43.478 0.00 0.00 0.00 2.93
622 623 2.684001 TCCACTGACTTCGTGTTTGT 57.316 45.000 0.00 0.00 0.00 2.83
623 624 3.804786 TCCACTGACTTCGTGTTTGTA 57.195 42.857 0.00 0.00 0.00 2.41
624 625 4.330944 TCCACTGACTTCGTGTTTGTAT 57.669 40.909 0.00 0.00 0.00 2.29
625 626 4.699637 TCCACTGACTTCGTGTTTGTATT 58.300 39.130 0.00 0.00 0.00 1.89
626 627 4.748102 TCCACTGACTTCGTGTTTGTATTC 59.252 41.667 0.00 0.00 0.00 1.75
627 628 4.509970 CCACTGACTTCGTGTTTGTATTCA 59.490 41.667 0.00 0.00 0.00 2.57
628 629 5.432157 CACTGACTTCGTGTTTGTATTCAC 58.568 41.667 0.00 0.00 0.00 3.18
629 630 5.234329 CACTGACTTCGTGTTTGTATTCACT 59.766 40.000 0.00 0.00 33.07 3.41
630 631 5.234329 ACTGACTTCGTGTTTGTATTCACTG 59.766 40.000 0.00 0.00 33.07 3.66
631 632 5.113383 TGACTTCGTGTTTGTATTCACTGT 58.887 37.500 0.00 0.00 33.07 3.55
632 633 5.583061 TGACTTCGTGTTTGTATTCACTGTT 59.417 36.000 0.00 0.00 33.07 3.16
633 634 6.757478 TGACTTCGTGTTTGTATTCACTGTTA 59.243 34.615 0.00 0.00 33.07 2.41
634 635 6.940714 ACTTCGTGTTTGTATTCACTGTTAC 58.059 36.000 0.00 0.00 33.07 2.50
635 636 5.564213 TCGTGTTTGTATTCACTGTTACG 57.436 39.130 0.00 0.00 33.07 3.18
636 637 4.084952 TCGTGTTTGTATTCACTGTTACGC 60.085 41.667 0.00 0.00 33.07 4.42
637 638 4.460505 GTGTTTGTATTCACTGTTACGCC 58.539 43.478 0.00 0.00 0.00 5.68
638 639 4.212636 GTGTTTGTATTCACTGTTACGCCT 59.787 41.667 0.00 0.00 0.00 5.52
639 640 4.449743 TGTTTGTATTCACTGTTACGCCTC 59.550 41.667 0.00 0.00 0.00 4.70
640 641 3.945981 TGTATTCACTGTTACGCCTCA 57.054 42.857 0.00 0.00 0.00 3.86
641 642 3.581755 TGTATTCACTGTTACGCCTCAC 58.418 45.455 0.00 0.00 0.00 3.51
642 643 2.094762 ATTCACTGTTACGCCTCACC 57.905 50.000 0.00 0.00 0.00 4.02
643 644 0.034337 TTCACTGTTACGCCTCACCC 59.966 55.000 0.00 0.00 0.00 4.61
644 645 1.116536 TCACTGTTACGCCTCACCCA 61.117 55.000 0.00 0.00 0.00 4.51
645 646 0.949105 CACTGTTACGCCTCACCCAC 60.949 60.000 0.00 0.00 0.00 4.61
646 647 1.119574 ACTGTTACGCCTCACCCACT 61.120 55.000 0.00 0.00 0.00 4.00
647 648 0.389948 CTGTTACGCCTCACCCACTC 60.390 60.000 0.00 0.00 0.00 3.51
648 649 1.445582 GTTACGCCTCACCCACTCG 60.446 63.158 0.00 0.00 0.00 4.18
649 650 2.642254 TTACGCCTCACCCACTCGG 61.642 63.158 0.00 0.00 37.81 4.63
650 651 3.572447 TACGCCTCACCCACTCGGA 62.572 63.158 0.00 0.00 34.64 4.55
651 652 4.436998 CGCCTCACCCACTCGGAC 62.437 72.222 0.00 0.00 34.64 4.79
652 653 4.083862 GCCTCACCCACTCGGACC 62.084 72.222 0.00 0.00 34.64 4.46
653 654 2.283966 CCTCACCCACTCGGACCT 60.284 66.667 0.00 0.00 34.64 3.85
654 655 1.000019 CCTCACCCACTCGGACCTA 60.000 63.158 0.00 0.00 34.64 3.08
655 656 1.038130 CCTCACCCACTCGGACCTAG 61.038 65.000 0.00 0.00 34.64 3.02
656 657 0.034380 CTCACCCACTCGGACCTAGA 60.034 60.000 0.00 0.00 34.64 2.43
657 658 0.629596 TCACCCACTCGGACCTAGAT 59.370 55.000 0.00 0.00 34.64 1.98
658 659 1.006758 TCACCCACTCGGACCTAGATT 59.993 52.381 0.00 0.00 34.64 2.40
659 660 1.137086 CACCCACTCGGACCTAGATTG 59.863 57.143 0.00 0.00 34.64 2.67
660 661 1.006758 ACCCACTCGGACCTAGATTGA 59.993 52.381 0.00 0.00 34.64 2.57
661 662 1.409427 CCCACTCGGACCTAGATTGAC 59.591 57.143 0.00 0.00 0.00 3.18
662 663 2.100197 CCACTCGGACCTAGATTGACA 58.900 52.381 0.00 0.00 0.00 3.58
663 664 2.159226 CCACTCGGACCTAGATTGACAC 60.159 54.545 0.00 0.00 0.00 3.67
664 665 2.100989 ACTCGGACCTAGATTGACACC 58.899 52.381 0.00 0.00 0.00 4.16
665 666 1.409427 CTCGGACCTAGATTGACACCC 59.591 57.143 0.00 0.00 0.00 4.61
666 667 1.006758 TCGGACCTAGATTGACACCCT 59.993 52.381 0.00 0.00 0.00 4.34
667 668 1.831736 CGGACCTAGATTGACACCCTT 59.168 52.381 0.00 0.00 0.00 3.95
668 669 2.236395 CGGACCTAGATTGACACCCTTT 59.764 50.000 0.00 0.00 0.00 3.11
669 670 3.307480 CGGACCTAGATTGACACCCTTTT 60.307 47.826 0.00 0.00 0.00 2.27
670 671 4.663334 GGACCTAGATTGACACCCTTTTT 58.337 43.478 0.00 0.00 0.00 1.94
837 841 2.477825 CACCGCACCTATTCATCAGAG 58.522 52.381 0.00 0.00 0.00 3.35
841 845 4.191544 CCGCACCTATTCATCAGAGAAAA 58.808 43.478 0.00 0.00 0.00 2.29
842 846 4.818546 CCGCACCTATTCATCAGAGAAAAT 59.181 41.667 0.00 0.00 0.00 1.82
844 848 6.483307 CCGCACCTATTCATCAGAGAAAATAA 59.517 38.462 0.00 0.00 0.00 1.40
845 849 7.173907 CCGCACCTATTCATCAGAGAAAATAAT 59.826 37.037 0.00 0.00 0.00 1.28
846 850 9.208022 CGCACCTATTCATCAGAGAAAATAATA 57.792 33.333 0.00 0.00 0.00 0.98
870 874 1.786049 GAAGGAAATCCGCCGCATCC 61.786 60.000 0.00 0.00 42.08 3.51
914 919 3.815401 CCACCGTATCATTCCCTCATTTC 59.185 47.826 0.00 0.00 0.00 2.17
922 927 0.404040 TTCCCTCATTTCGCCCAACT 59.596 50.000 0.00 0.00 0.00 3.16
924 929 1.631388 TCCCTCATTTCGCCCAACTTA 59.369 47.619 0.00 0.00 0.00 2.24
930 935 1.061546 TTTCGCCCAACTTACTCCCT 58.938 50.000 0.00 0.00 0.00 4.20
976 987 1.663074 GCGAGCATCATCCGAGACC 60.663 63.158 0.00 0.00 33.17 3.85
1482 2312 2.342648 GAGGTGGCCGTCGAGTTT 59.657 61.111 0.00 0.00 0.00 2.66
1580 2413 2.289195 ACAAGAAGCACCCGAATTACGA 60.289 45.455 0.00 0.00 45.77 3.43
1581 2414 2.739913 CAAGAAGCACCCGAATTACGAA 59.260 45.455 0.00 0.00 45.77 3.85
2166 3019 3.426568 GAGCAGCACCTGAACGCC 61.427 66.667 0.00 0.00 32.44 5.68
2372 3228 1.686110 AGGGCGGGTCCTCTTACTG 60.686 63.158 0.00 0.00 29.56 2.74
2410 3266 1.071228 CCGAGGAGATGATCAATGGCA 59.929 52.381 0.00 0.00 0.00 4.92
2446 3328 2.223971 ACGAACACGGAGATGAACTTGT 60.224 45.455 0.00 0.00 0.00 3.16
2510 3398 3.372514 GGCTCTTTCTCCATTTCGAGTTC 59.627 47.826 0.00 0.00 0.00 3.01
2511 3399 4.249661 GCTCTTTCTCCATTTCGAGTTCT 58.750 43.478 0.00 0.00 0.00 3.01
2512 3400 4.328712 GCTCTTTCTCCATTTCGAGTTCTC 59.671 45.833 0.00 0.00 0.00 2.87
2532 3420 1.073199 CTCTTTGGGACTTGCGGGT 59.927 57.895 0.00 0.00 0.00 5.28
2545 3433 4.821589 CGGGTGGCTTCTCTCCGC 62.822 72.222 0.00 0.00 34.17 5.54
2549 3437 0.466124 GGTGGCTTCTCTCCGCTTAT 59.534 55.000 0.00 0.00 34.64 1.73
2565 3453 4.615541 CCGCTTATTTTTCCGTTCTTGTTC 59.384 41.667 0.00 0.00 0.00 3.18
2567 3455 5.209977 GCTTATTTTTCCGTTCTTGTTCGT 58.790 37.500 0.00 0.00 0.00 3.85
2574 3464 3.992643 TCCGTTCTTGTTCGTTCCATTA 58.007 40.909 0.00 0.00 0.00 1.90
2592 3482 1.952621 TACCCTTTCTCCTGACCTGG 58.047 55.000 0.00 0.00 0.00 4.45
2652 3542 3.464720 TCCCAATAAAATCACCTGCCA 57.535 42.857 0.00 0.00 0.00 4.92
2653 3543 3.992999 TCCCAATAAAATCACCTGCCAT 58.007 40.909 0.00 0.00 0.00 4.40
2676 3566 7.201767 CCATTTGTTTGGTCTGATCCTATCTTC 60.202 40.741 0.00 0.00 31.74 2.87
2677 3567 6.627087 TTGTTTGGTCTGATCCTATCTTCT 57.373 37.500 0.00 0.00 0.00 2.85
2684 3574 8.046867 TGGTCTGATCCTATCTTCTTACTCTA 57.953 38.462 0.00 0.00 0.00 2.43
2685 3575 8.674173 TGGTCTGATCCTATCTTCTTACTCTAT 58.326 37.037 0.00 0.00 0.00 1.98
2749 3877 8.682936 AATCAAACTCCTATATGATTGACCAC 57.317 34.615 0.00 0.00 40.11 4.16
2917 4535 6.533730 ACTGTGTTCTAGGTCATTTGAATCA 58.466 36.000 0.00 0.00 0.00 2.57
2960 4578 6.619801 ATGTTCTTAATTTAGGACATCCGC 57.380 37.500 11.78 0.00 39.65 5.54
2993 4611 3.527533 TCTCGTGTTGCCAATATACCAC 58.472 45.455 0.00 0.00 0.00 4.16
2995 4613 3.676093 TCGTGTTGCCAATATACCACAA 58.324 40.909 0.00 0.00 0.00 3.33
2998 4616 3.508012 GTGTTGCCAATATACCACAACCA 59.492 43.478 0.00 0.00 39.83 3.67
2999 4617 4.159506 GTGTTGCCAATATACCACAACCAT 59.840 41.667 0.00 0.00 39.83 3.55
3051 4669 3.142838 GCCCAACAGCCGCATGAT 61.143 61.111 0.00 0.00 0.00 2.45
3072 4690 0.457851 CTCCTCCTTCTACACCGCAG 59.542 60.000 0.00 0.00 0.00 5.18
3079 4697 2.725203 TTCTACACCGCAGCCGCTTT 62.725 55.000 0.00 0.00 35.30 3.51
3126 4744 4.579384 CAACCACCACGGCCACCT 62.579 66.667 2.24 0.00 39.03 4.00
3166 4784 3.995526 TCCACGAGGATGATGATGC 57.004 52.632 0.00 0.00 39.61 3.91
3181 4799 3.033368 TGATGCGTAGTGTGTGCTTAA 57.967 42.857 0.00 0.00 0.00 1.85
3195 4813 2.802816 GTGCTTAATAGTGAGCCCATCG 59.197 50.000 4.39 0.00 35.52 3.84
3228 4846 7.282332 TCATAGTGAGTCTACCATGATTGAG 57.718 40.000 0.00 0.00 0.00 3.02
3233 4851 7.551585 AGTGAGTCTACCATGATTGAGTTTAG 58.448 38.462 0.00 0.00 0.00 1.85
3235 4853 8.200792 GTGAGTCTACCATGATTGAGTTTAGAT 58.799 37.037 0.00 0.00 0.00 1.98
3349 4968 5.036117 TCTGGTGCCTATTTTACATCCTC 57.964 43.478 0.00 0.00 0.00 3.71
3355 4974 5.467063 GTGCCTATTTTACATCCTCTGCTAC 59.533 44.000 0.00 0.00 0.00 3.58
3406 5025 1.286553 ACCCACTTTTTGGTGTCCTGA 59.713 47.619 0.00 0.00 45.25 3.86
3409 5028 4.148838 CCCACTTTTTGGTGTCCTGATTA 58.851 43.478 0.00 0.00 45.25 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.116536 TGTTCTGGTCGGTGTAGCCA 61.117 55.000 0.00 0.00 36.97 4.75
1 2 0.389948 CTGTTCTGGTCGGTGTAGCC 60.390 60.000 0.00 0.00 0.00 3.93
2 3 0.601558 TCTGTTCTGGTCGGTGTAGC 59.398 55.000 0.00 0.00 0.00 3.58
4 5 3.659786 CAAATCTGTTCTGGTCGGTGTA 58.340 45.455 0.00 0.00 0.00 2.90
6 7 1.197721 GCAAATCTGTTCTGGTCGGTG 59.802 52.381 0.00 0.00 0.00 4.94
7 8 1.523758 GCAAATCTGTTCTGGTCGGT 58.476 50.000 0.00 0.00 0.00 4.69
8 9 0.804989 GGCAAATCTGTTCTGGTCGG 59.195 55.000 0.00 0.00 0.00 4.79
9 10 1.522668 TGGCAAATCTGTTCTGGTCG 58.477 50.000 0.00 0.00 0.00 4.79
10 11 2.165030 CCATGGCAAATCTGTTCTGGTC 59.835 50.000 0.00 0.00 0.00 4.02
11 12 2.173519 CCATGGCAAATCTGTTCTGGT 58.826 47.619 0.00 0.00 0.00 4.00
12 13 1.479323 CCCATGGCAAATCTGTTCTGG 59.521 52.381 6.09 0.00 0.00 3.86
13 14 2.094390 CACCCATGGCAAATCTGTTCTG 60.094 50.000 6.09 0.00 0.00 3.02
14 15 2.173519 CACCCATGGCAAATCTGTTCT 58.826 47.619 6.09 0.00 0.00 3.01
15 16 1.404583 GCACCCATGGCAAATCTGTTC 60.405 52.381 6.09 0.00 0.00 3.18
16 17 0.609662 GCACCCATGGCAAATCTGTT 59.390 50.000 6.09 0.00 0.00 3.16
17 18 2.279842 GCACCCATGGCAAATCTGT 58.720 52.632 6.09 0.00 0.00 3.41
35 36 4.641645 TGGTGGACTGCTTGGCGG 62.642 66.667 0.00 0.00 41.29 6.13
36 37 2.594303 TTGGTGGACTGCTTGGCG 60.594 61.111 0.00 0.00 0.00 5.69
37 38 2.924105 GCTTGGTGGACTGCTTGGC 61.924 63.158 0.00 0.00 0.00 4.52
38 39 2.270986 GGCTTGGTGGACTGCTTGG 61.271 63.158 0.00 0.00 0.00 3.61
39 40 2.270986 GGGCTTGGTGGACTGCTTG 61.271 63.158 0.00 0.00 0.00 4.01
40 41 2.011617 AAGGGCTTGGTGGACTGCTT 62.012 55.000 0.00 0.00 0.00 3.91
41 42 2.464403 AAGGGCTTGGTGGACTGCT 61.464 57.895 0.00 0.00 0.00 4.24
42 43 2.116125 AAGGGCTTGGTGGACTGC 59.884 61.111 0.00 0.00 0.00 4.40
43 44 0.890996 GTCAAGGGCTTGGTGGACTG 60.891 60.000 0.00 0.00 40.78 3.51
44 45 1.456287 GTCAAGGGCTTGGTGGACT 59.544 57.895 0.00 0.00 40.78 3.85
45 46 1.966451 CGTCAAGGGCTTGGTGGAC 60.966 63.158 0.00 0.00 40.78 4.02
46 47 2.429930 CGTCAAGGGCTTGGTGGA 59.570 61.111 0.00 0.00 40.78 4.02
47 48 3.365265 GCGTCAAGGGCTTGGTGG 61.365 66.667 0.00 0.00 40.78 4.61
48 49 3.365265 GGCGTCAAGGGCTTGGTG 61.365 66.667 0.00 0.00 40.78 4.17
63 64 3.338676 CTTTAGATCGGCGGCGGC 61.339 66.667 31.73 24.75 38.90 6.53
64 65 3.338676 GCTTTAGATCGGCGGCGG 61.339 66.667 31.73 14.27 0.00 6.13
65 66 3.338676 GGCTTTAGATCGGCGGCG 61.339 66.667 27.15 27.15 0.00 6.46
66 67 2.203015 TGGCTTTAGATCGGCGGC 60.203 61.111 7.21 0.00 0.00 6.53
67 68 0.034059 ATCTGGCTTTAGATCGGCGG 59.966 55.000 7.21 0.00 31.97 6.13
68 69 1.143305 CATCTGGCTTTAGATCGGCG 58.857 55.000 0.00 0.00 35.28 6.46
69 70 2.139118 GTCATCTGGCTTTAGATCGGC 58.861 52.381 0.00 0.00 35.28 5.54
70 71 3.459232 TGTCATCTGGCTTTAGATCGG 57.541 47.619 0.00 0.00 35.28 4.18
71 72 3.186001 GCATGTCATCTGGCTTTAGATCG 59.814 47.826 0.00 0.00 35.28 3.69
72 73 3.501445 GGCATGTCATCTGGCTTTAGATC 59.499 47.826 0.00 0.00 35.28 2.75
73 74 3.484407 GGCATGTCATCTGGCTTTAGAT 58.516 45.455 0.00 0.00 37.90 1.98
74 75 2.742856 CGGCATGTCATCTGGCTTTAGA 60.743 50.000 0.00 0.00 37.06 2.10
75 76 1.600957 CGGCATGTCATCTGGCTTTAG 59.399 52.381 0.00 0.00 37.06 1.85
76 77 1.667236 CGGCATGTCATCTGGCTTTA 58.333 50.000 0.00 0.00 37.06 1.85
77 78 1.660560 GCGGCATGTCATCTGGCTTT 61.661 55.000 0.00 0.00 37.06 3.51
78 79 2.117156 GCGGCATGTCATCTGGCTT 61.117 57.895 0.00 0.00 37.06 4.35
79 80 2.515523 GCGGCATGTCATCTGGCT 60.516 61.111 0.00 0.00 37.06 4.75
80 81 3.589881 GGCGGCATGTCATCTGGC 61.590 66.667 3.07 0.00 35.94 4.85
81 82 3.274586 CGGCGGCATGTCATCTGG 61.275 66.667 10.53 0.00 0.00 3.86
82 83 2.202919 TCGGCGGCATGTCATCTG 60.203 61.111 10.53 0.00 0.00 2.90
83 84 2.202932 GTCGGCGGCATGTCATCT 60.203 61.111 6.63 0.00 0.00 2.90
84 85 3.272334 GGTCGGCGGCATGTCATC 61.272 66.667 15.59 0.00 0.00 2.92
116 117 4.598894 CAGCTCGCCTGGATCGGG 62.599 72.222 0.00 0.00 37.93 5.14
146 147 3.470888 CTACCTCAGGCCACGGGG 61.471 72.222 5.01 7.71 37.18 5.73
147 148 3.470888 CCTACCTCAGGCCACGGG 61.471 72.222 5.01 5.87 37.70 5.28
148 149 3.470888 CCCTACCTCAGGCCACGG 61.471 72.222 5.01 4.19 43.98 4.94
149 150 4.162690 GCCCTACCTCAGGCCACG 62.163 72.222 5.01 0.00 43.98 4.94
154 155 3.155167 GGTCGGCCCTACCTCAGG 61.155 72.222 13.61 0.00 45.07 3.86
155 156 3.528370 CGGTCGGCCCTACCTCAG 61.528 72.222 17.58 1.56 34.66 3.35
181 182 3.774702 GACGGCGTTGGCTTCGAC 61.775 66.667 16.19 0.00 39.81 4.20
188 189 2.726691 CTACAAGCGACGGCGTTGG 61.727 63.158 27.17 14.88 46.35 3.77
189 190 1.076533 ATCTACAAGCGACGGCGTTG 61.077 55.000 22.69 22.69 46.35 4.10
190 191 0.389426 AATCTACAAGCGACGGCGTT 60.389 50.000 16.19 1.65 46.35 4.84
191 192 1.076533 CAATCTACAAGCGACGGCGT 61.077 55.000 14.65 14.65 46.35 5.68
192 193 1.631072 CAATCTACAAGCGACGGCG 59.369 57.895 6.12 6.12 46.35 6.46
193 194 2.006772 CCAATCTACAAGCGACGGC 58.993 57.895 0.00 0.00 40.37 5.68
194 195 1.429148 GGCCAATCTACAAGCGACGG 61.429 60.000 0.00 0.00 0.00 4.79
195 196 0.460284 AGGCCAATCTACAAGCGACG 60.460 55.000 5.01 0.00 0.00 5.12
196 197 1.291132 GAGGCCAATCTACAAGCGAC 58.709 55.000 5.01 0.00 0.00 5.19
197 198 0.901827 TGAGGCCAATCTACAAGCGA 59.098 50.000 5.01 0.00 0.00 4.93
198 199 1.009829 GTGAGGCCAATCTACAAGCG 58.990 55.000 5.01 0.00 0.00 4.68
199 200 1.065126 AGGTGAGGCCAATCTACAAGC 60.065 52.381 5.01 0.00 40.61 4.01
200 201 2.420687 GGAGGTGAGGCCAATCTACAAG 60.421 54.545 5.01 0.00 40.61 3.16
201 202 1.559682 GGAGGTGAGGCCAATCTACAA 59.440 52.381 5.01 0.00 40.61 2.41
202 203 1.204146 GGAGGTGAGGCCAATCTACA 58.796 55.000 5.01 0.00 40.61 2.74
203 204 1.134371 GTGGAGGTGAGGCCAATCTAC 60.134 57.143 5.01 0.00 40.61 2.59
204 205 1.204146 GTGGAGGTGAGGCCAATCTA 58.796 55.000 5.01 0.00 40.61 1.98
205 206 1.903877 CGTGGAGGTGAGGCCAATCT 61.904 60.000 5.01 0.00 40.61 2.40
206 207 1.450312 CGTGGAGGTGAGGCCAATC 60.450 63.158 5.01 0.00 40.61 2.67
207 208 2.671070 CGTGGAGGTGAGGCCAAT 59.329 61.111 5.01 0.00 40.61 3.16
208 209 4.329545 GCGTGGAGGTGAGGCCAA 62.330 66.667 5.01 0.00 40.61 4.52
210 211 4.101448 ATGCGTGGAGGTGAGGCC 62.101 66.667 0.00 0.00 37.58 5.19
211 212 2.821366 CATGCGTGGAGGTGAGGC 60.821 66.667 0.00 0.00 0.00 4.70
212 213 1.003355 AACATGCGTGGAGGTGAGG 60.003 57.895 11.36 0.00 0.00 3.86
213 214 1.300971 CCAACATGCGTGGAGGTGAG 61.301 60.000 11.36 0.00 0.00 3.51
214 215 1.302431 CCAACATGCGTGGAGGTGA 60.302 57.895 11.36 0.00 0.00 4.02
215 216 2.334946 CCCAACATGCGTGGAGGTG 61.335 63.158 15.96 2.78 0.00 4.00
216 217 2.034066 CCCAACATGCGTGGAGGT 59.966 61.111 15.96 0.00 0.00 3.85
217 218 2.751436 CCCCAACATGCGTGGAGG 60.751 66.667 15.96 11.12 0.00 4.30
218 219 2.034066 ACCCCAACATGCGTGGAG 59.966 61.111 15.96 6.77 0.00 3.86
219 220 2.033448 GACCCCAACATGCGTGGA 59.967 61.111 15.96 0.00 0.00 4.02
220 221 3.061848 GGACCCCAACATGCGTGG 61.062 66.667 11.36 8.74 0.00 4.94
221 222 3.061848 GGGACCCCAACATGCGTG 61.062 66.667 3.82 3.82 35.81 5.34
222 223 4.715523 CGGGACCCCAACATGCGT 62.716 66.667 4.46 0.00 35.37 5.24
225 226 4.358841 TGGCGGGACCCCAACATG 62.359 66.667 4.46 0.00 37.83 3.21
226 227 4.360405 GTGGCGGGACCCCAACAT 62.360 66.667 4.46 0.00 37.83 2.71
246 247 3.522731 CTCCCTCCCGCGTCTCAG 61.523 72.222 4.92 0.00 0.00 3.35
248 249 4.816984 TCCTCCCTCCCGCGTCTC 62.817 72.222 4.92 0.00 0.00 3.36
249 250 4.377760 TTCCTCCCTCCCGCGTCT 62.378 66.667 4.92 0.00 0.00 4.18
250 251 3.839432 CTTCCTCCCTCCCGCGTC 61.839 72.222 4.92 0.00 0.00 5.19
251 252 4.377760 TCTTCCTCCCTCCCGCGT 62.378 66.667 4.92 0.00 0.00 6.01
252 253 3.532155 CTCTTCCTCCCTCCCGCG 61.532 72.222 0.00 0.00 0.00 6.46
253 254 3.855853 GCTCTTCCTCCCTCCCGC 61.856 72.222 0.00 0.00 0.00 6.13
254 255 3.157949 GGCTCTTCCTCCCTCCCG 61.158 72.222 0.00 0.00 0.00 5.14
255 256 2.770475 GGGCTCTTCCTCCCTCCC 60.770 72.222 0.00 0.00 39.46 4.30
256 257 2.770475 GGGGCTCTTCCTCCCTCC 60.770 72.222 0.00 0.00 42.25 4.30
263 264 4.570874 GATGGCGGGGGCTCTTCC 62.571 72.222 0.00 0.00 0.00 3.46
264 265 4.918201 CGATGGCGGGGGCTCTTC 62.918 72.222 0.00 0.00 0.00 2.87
308 309 2.683933 TTCCCTCCTCCTGACGCC 60.684 66.667 0.00 0.00 0.00 5.68
309 310 2.726351 CCTTCCCTCCTCCTGACGC 61.726 68.421 0.00 0.00 0.00 5.19
310 311 1.000486 TCCTTCCCTCCTCCTGACG 60.000 63.158 0.00 0.00 0.00 4.35
311 312 0.689412 CCTCCTTCCCTCCTCCTGAC 60.689 65.000 0.00 0.00 0.00 3.51
312 313 0.855855 TCCTCCTTCCCTCCTCCTGA 60.856 60.000 0.00 0.00 0.00 3.86
313 314 0.267356 ATCCTCCTTCCCTCCTCCTG 59.733 60.000 0.00 0.00 0.00 3.86
314 315 0.267356 CATCCTCCTTCCCTCCTCCT 59.733 60.000 0.00 0.00 0.00 3.69
315 316 0.766288 CCATCCTCCTTCCCTCCTCC 60.766 65.000 0.00 0.00 0.00 4.30
316 317 0.766288 CCCATCCTCCTTCCCTCCTC 60.766 65.000 0.00 0.00 0.00 3.71
317 318 1.319799 CCCATCCTCCTTCCCTCCT 59.680 63.158 0.00 0.00 0.00 3.69
318 319 2.456443 GCCCATCCTCCTTCCCTCC 61.456 68.421 0.00 0.00 0.00 4.30
319 320 0.104934 TAGCCCATCCTCCTTCCCTC 60.105 60.000 0.00 0.00 0.00 4.30
320 321 0.104725 CTAGCCCATCCTCCTTCCCT 60.105 60.000 0.00 0.00 0.00 4.20
321 322 1.130678 CCTAGCCCATCCTCCTTCCC 61.131 65.000 0.00 0.00 0.00 3.97
322 323 1.773856 GCCTAGCCCATCCTCCTTCC 61.774 65.000 0.00 0.00 0.00 3.46
323 324 1.757949 GCCTAGCCCATCCTCCTTC 59.242 63.158 0.00 0.00 0.00 3.46
324 325 1.772156 GGCCTAGCCCATCCTCCTT 60.772 63.158 0.00 0.00 44.06 3.36
325 326 2.122189 GGCCTAGCCCATCCTCCT 60.122 66.667 0.00 0.00 44.06 3.69
335 336 4.577246 CCGCTGTCGAGGCCTAGC 62.577 72.222 14.30 14.30 38.10 3.42
336 337 2.829003 TCCGCTGTCGAGGCCTAG 60.829 66.667 4.42 5.63 38.10 3.02
337 338 2.829003 CTCCGCTGTCGAGGCCTA 60.829 66.667 4.42 0.00 38.10 3.93
344 345 4.914420 CTAGCCGCTCCGCTGTCG 62.914 72.222 0.00 0.00 40.08 4.35
345 346 4.577246 CCTAGCCGCTCCGCTGTC 62.577 72.222 0.00 0.00 40.08 3.51
350 351 4.530857 CCAACCCTAGCCGCTCCG 62.531 72.222 0.00 0.00 0.00 4.63
351 352 4.176752 CCCAACCCTAGCCGCTCC 62.177 72.222 0.00 0.00 0.00 4.70
352 353 4.176752 CCCCAACCCTAGCCGCTC 62.177 72.222 0.00 0.00 0.00 5.03
353 354 4.733725 TCCCCAACCCTAGCCGCT 62.734 66.667 0.00 0.00 0.00 5.52
354 355 4.176752 CTCCCCAACCCTAGCCGC 62.177 72.222 0.00 0.00 0.00 6.53
355 356 4.176752 GCTCCCCAACCCTAGCCG 62.177 72.222 0.00 0.00 0.00 5.52
357 358 3.015145 TGGCTCCCCAACCCTAGC 61.015 66.667 0.00 0.00 38.46 3.42
358 359 2.680370 GGTGGCTCCCCAACCCTAG 61.680 68.421 0.00 0.00 43.39 3.02
359 360 2.612746 GGTGGCTCCCCAACCCTA 60.613 66.667 0.00 0.00 43.39 3.53
394 395 3.492311 GATCTCGCTCAGGTCGCCC 62.492 68.421 0.00 0.00 0.00 6.13
395 396 2.026879 GATCTCGCTCAGGTCGCC 59.973 66.667 0.00 0.00 0.00 5.54
398 399 1.357334 GACCGATCTCGCTCAGGTC 59.643 63.158 0.00 0.00 43.55 3.85
399 400 0.180642 TAGACCGATCTCGCTCAGGT 59.819 55.000 0.00 0.00 36.29 4.00
400 401 1.309950 TTAGACCGATCTCGCTCAGG 58.690 55.000 0.00 0.00 36.29 3.86
401 402 3.634568 ATTTAGACCGATCTCGCTCAG 57.365 47.619 0.00 0.00 36.29 3.35
402 403 4.135306 AGTATTTAGACCGATCTCGCTCA 58.865 43.478 0.00 0.00 36.29 4.26
403 404 4.752661 AGTATTTAGACCGATCTCGCTC 57.247 45.455 0.00 0.00 36.29 5.03
404 405 6.821031 ATTAGTATTTAGACCGATCTCGCT 57.179 37.500 0.00 0.00 36.29 4.93
405 406 9.570488 AATAATTAGTATTTAGACCGATCTCGC 57.430 33.333 0.00 0.00 36.29 5.03
434 435 9.749490 CGAATGTATCTAAACACGTTTTAATGT 57.251 29.630 0.00 0.00 34.23 2.71
435 436 9.749490 ACGAATGTATCTAAACACGTTTTAATG 57.251 29.630 0.00 0.00 30.66 1.90
436 437 9.749490 CACGAATGTATCTAAACACGTTTTAAT 57.251 29.630 0.00 0.00 31.96 1.40
437 438 8.763356 ACACGAATGTATCTAAACACGTTTTAA 58.237 29.630 0.00 0.00 37.26 1.52
438 439 8.296799 ACACGAATGTATCTAAACACGTTTTA 57.703 30.769 0.00 0.00 37.26 1.52
439 440 7.181143 ACACGAATGTATCTAAACACGTTTT 57.819 32.000 0.00 0.00 37.26 2.43
440 441 6.128742 GGACACGAATGTATCTAAACACGTTT 60.129 38.462 0.22 0.22 39.95 3.60
441 442 5.346822 GGACACGAATGTATCTAAACACGTT 59.653 40.000 0.00 0.00 39.95 3.99
442 443 4.860907 GGACACGAATGTATCTAAACACGT 59.139 41.667 0.00 0.00 39.95 4.49
443 444 4.860352 TGGACACGAATGTATCTAAACACG 59.140 41.667 0.00 0.00 39.95 4.49
444 445 5.636121 TGTGGACACGAATGTATCTAAACAC 59.364 40.000 0.00 0.00 39.95 3.32
445 446 5.636121 GTGTGGACACGAATGTATCTAAACA 59.364 40.000 0.00 0.00 39.95 2.83
446 447 6.091123 GTGTGGACACGAATGTATCTAAAC 57.909 41.667 0.00 0.00 39.95 2.01
460 461 1.317613 TCTGGCATTTGTGTGGACAC 58.682 50.000 2.81 2.81 46.59 3.67
461 462 2.291209 ATCTGGCATTTGTGTGGACA 57.709 45.000 0.00 0.00 0.00 4.02
462 463 3.758554 ACTTATCTGGCATTTGTGTGGAC 59.241 43.478 0.00 0.00 0.00 4.02
463 464 4.032960 ACTTATCTGGCATTTGTGTGGA 57.967 40.909 0.00 0.00 0.00 4.02
464 465 5.895636 TTACTTATCTGGCATTTGTGTGG 57.104 39.130 0.00 0.00 0.00 4.17
465 466 6.688385 CGAATTACTTATCTGGCATTTGTGTG 59.312 38.462 0.00 0.00 0.00 3.82
466 467 6.183360 CCGAATTACTTATCTGGCATTTGTGT 60.183 38.462 0.00 0.00 0.00 3.72
467 468 6.201517 CCGAATTACTTATCTGGCATTTGTG 58.798 40.000 0.00 0.00 0.00 3.33
468 469 5.299279 CCCGAATTACTTATCTGGCATTTGT 59.701 40.000 0.00 0.00 0.00 2.83
469 470 5.530915 TCCCGAATTACTTATCTGGCATTTG 59.469 40.000 0.00 0.00 0.00 2.32
470 471 5.690865 TCCCGAATTACTTATCTGGCATTT 58.309 37.500 0.00 0.00 0.00 2.32
471 472 5.304686 TCCCGAATTACTTATCTGGCATT 57.695 39.130 0.00 0.00 0.00 3.56
472 473 4.263068 CCTCCCGAATTACTTATCTGGCAT 60.263 45.833 0.00 0.00 0.00 4.40
473 474 3.071023 CCTCCCGAATTACTTATCTGGCA 59.929 47.826 0.00 0.00 0.00 4.92
474 475 3.557264 CCCTCCCGAATTACTTATCTGGC 60.557 52.174 0.00 0.00 0.00 4.85
475 476 3.901844 TCCCTCCCGAATTACTTATCTGG 59.098 47.826 0.00 0.00 0.00 3.86
476 477 4.021016 CCTCCCTCCCGAATTACTTATCTG 60.021 50.000 0.00 0.00 0.00 2.90
477 478 4.140758 TCCTCCCTCCCGAATTACTTATCT 60.141 45.833 0.00 0.00 0.00 1.98
478 479 4.158015 TCCTCCCTCCCGAATTACTTATC 58.842 47.826 0.00 0.00 0.00 1.75
479 480 4.209154 TCCTCCCTCCCGAATTACTTAT 57.791 45.455 0.00 0.00 0.00 1.73
480 481 3.693526 TCCTCCCTCCCGAATTACTTA 57.306 47.619 0.00 0.00 0.00 2.24
481 482 2.563039 TCCTCCCTCCCGAATTACTT 57.437 50.000 0.00 0.00 0.00 2.24
482 483 2.292984 ACTTCCTCCCTCCCGAATTACT 60.293 50.000 0.00 0.00 0.00 2.24
483 484 2.102757 GACTTCCTCCCTCCCGAATTAC 59.897 54.545 0.00 0.00 0.00 1.89
484 485 2.395619 GACTTCCTCCCTCCCGAATTA 58.604 52.381 0.00 0.00 0.00 1.40
485 486 1.205055 GACTTCCTCCCTCCCGAATT 58.795 55.000 0.00 0.00 0.00 2.17
486 487 0.691413 GGACTTCCTCCCTCCCGAAT 60.691 60.000 0.00 0.00 31.83 3.34
487 488 1.305887 GGACTTCCTCCCTCCCGAA 60.306 63.158 0.00 0.00 31.83 4.30
488 489 0.922738 TAGGACTTCCTCCCTCCCGA 60.923 60.000 0.00 0.00 44.77 5.14
489 490 0.468400 CTAGGACTTCCTCCCTCCCG 60.468 65.000 0.00 0.00 44.77 5.14
490 491 0.761323 GCTAGGACTTCCTCCCTCCC 60.761 65.000 0.00 0.00 44.77 4.30
491 492 0.032017 TGCTAGGACTTCCTCCCTCC 60.032 60.000 0.00 0.00 44.77 4.30
492 493 1.691434 CATGCTAGGACTTCCTCCCTC 59.309 57.143 0.00 0.00 44.77 4.30
493 494 1.694048 CCATGCTAGGACTTCCTCCCT 60.694 57.143 0.00 0.00 44.77 4.20
494 495 0.761802 CCATGCTAGGACTTCCTCCC 59.238 60.000 0.00 0.00 44.77 4.30
495 496 0.107643 GCCATGCTAGGACTTCCTCC 59.892 60.000 0.00 0.00 44.77 4.30
496 497 1.127343 AGCCATGCTAGGACTTCCTC 58.873 55.000 0.00 0.00 44.77 3.71
498 499 3.393472 CAGCCATGCTAGGACTTCC 57.607 57.895 0.00 0.00 36.40 3.46
509 510 3.129502 CCACTCCGTGCAGCCATG 61.130 66.667 0.00 0.00 31.34 3.66
510 511 2.202236 ATTCCACTCCGTGCAGCCAT 62.202 55.000 0.00 0.00 31.34 4.40
511 512 2.410322 AATTCCACTCCGTGCAGCCA 62.410 55.000 0.00 0.00 31.34 4.75
512 513 0.392461 TAATTCCACTCCGTGCAGCC 60.392 55.000 0.00 0.00 31.34 4.85
513 514 1.331756 CATAATTCCACTCCGTGCAGC 59.668 52.381 0.00 0.00 31.34 5.25
514 515 1.942657 CCATAATTCCACTCCGTGCAG 59.057 52.381 0.00 0.00 31.34 4.41
515 516 2.016604 GCCATAATTCCACTCCGTGCA 61.017 52.381 0.00 0.00 31.34 4.57
516 517 0.663153 GCCATAATTCCACTCCGTGC 59.337 55.000 0.00 0.00 31.34 5.34
517 518 2.036958 TGCCATAATTCCACTCCGTG 57.963 50.000 0.00 0.00 0.00 4.94
518 519 3.297134 AATGCCATAATTCCACTCCGT 57.703 42.857 0.00 0.00 0.00 4.69
519 520 4.097741 TGAAAATGCCATAATTCCACTCCG 59.902 41.667 1.94 0.00 0.00 4.63
520 521 5.596836 TGAAAATGCCATAATTCCACTCC 57.403 39.130 1.94 0.00 0.00 3.85
521 522 5.916883 CGATGAAAATGCCATAATTCCACTC 59.083 40.000 1.94 0.00 0.00 3.51
522 523 5.737063 GCGATGAAAATGCCATAATTCCACT 60.737 40.000 0.00 0.00 0.00 4.00
523 524 4.445385 GCGATGAAAATGCCATAATTCCAC 59.555 41.667 0.00 0.00 0.00 4.02
524 525 4.099113 TGCGATGAAAATGCCATAATTCCA 59.901 37.500 0.00 0.00 0.00 3.53
525 526 4.445385 GTGCGATGAAAATGCCATAATTCC 59.555 41.667 0.00 0.00 0.00 3.01
526 527 5.284079 AGTGCGATGAAAATGCCATAATTC 58.716 37.500 0.00 0.00 0.00 2.17
527 528 5.266733 AGTGCGATGAAAATGCCATAATT 57.733 34.783 0.00 0.00 0.00 1.40
528 529 4.924305 AGTGCGATGAAAATGCCATAAT 57.076 36.364 0.00 0.00 0.00 1.28
529 530 4.637977 TGTAGTGCGATGAAAATGCCATAA 59.362 37.500 0.00 0.00 0.00 1.90
530 531 4.195416 TGTAGTGCGATGAAAATGCCATA 58.805 39.130 0.00 0.00 0.00 2.74
531 532 3.016031 TGTAGTGCGATGAAAATGCCAT 58.984 40.909 0.00 0.00 0.00 4.40
532 533 2.431454 TGTAGTGCGATGAAAATGCCA 58.569 42.857 0.00 0.00 0.00 4.92
533 534 3.485947 TTGTAGTGCGATGAAAATGCC 57.514 42.857 0.00 0.00 0.00 4.40
534 535 5.629020 TCTTTTTGTAGTGCGATGAAAATGC 59.371 36.000 0.00 0.00 0.00 3.56
535 536 7.801547 ATCTTTTTGTAGTGCGATGAAAATG 57.198 32.000 0.00 0.00 0.00 2.32
536 537 7.692291 CGTATCTTTTTGTAGTGCGATGAAAAT 59.308 33.333 0.00 0.00 0.00 1.82
537 538 7.012943 CGTATCTTTTTGTAGTGCGATGAAAA 58.987 34.615 0.00 0.00 0.00 2.29
538 539 6.366604 TCGTATCTTTTTGTAGTGCGATGAAA 59.633 34.615 0.00 0.00 0.00 2.69
539 540 5.865013 TCGTATCTTTTTGTAGTGCGATGAA 59.135 36.000 0.00 0.00 0.00 2.57
540 541 5.404096 TCGTATCTTTTTGTAGTGCGATGA 58.596 37.500 0.00 0.00 0.00 2.92
541 542 5.696260 TCGTATCTTTTTGTAGTGCGATG 57.304 39.130 0.00 0.00 0.00 3.84
542 543 6.533723 TGAATCGTATCTTTTTGTAGTGCGAT 59.466 34.615 0.00 0.00 38.03 4.58
543 544 5.865013 TGAATCGTATCTTTTTGTAGTGCGA 59.135 36.000 0.00 0.00 0.00 5.10
544 545 5.952064 GTGAATCGTATCTTTTTGTAGTGCG 59.048 40.000 0.00 0.00 0.00 5.34
545 546 5.952064 CGTGAATCGTATCTTTTTGTAGTGC 59.048 40.000 0.00 0.00 34.52 4.40
546 547 7.273188 TCGTGAATCGTATCTTTTTGTAGTG 57.727 36.000 0.00 0.00 40.80 2.74
547 548 8.475331 AATCGTGAATCGTATCTTTTTGTAGT 57.525 30.769 0.00 0.00 40.80 2.73
548 549 9.755064 AAAATCGTGAATCGTATCTTTTTGTAG 57.245 29.630 0.00 0.00 40.80 2.74
549 550 9.536558 CAAAATCGTGAATCGTATCTTTTTGTA 57.463 29.630 0.00 0.00 40.80 2.41
550 551 8.073768 ACAAAATCGTGAATCGTATCTTTTTGT 58.926 29.630 0.00 0.00 40.80 2.83
551 552 8.434870 ACAAAATCGTGAATCGTATCTTTTTG 57.565 30.769 0.00 0.00 40.80 2.44
558 559 9.284594 CCAATTTTACAAAATCGTGAATCGTAT 57.715 29.630 0.63 0.00 37.62 3.06
559 560 7.271653 GCCAATTTTACAAAATCGTGAATCGTA 59.728 33.333 0.63 0.00 37.62 3.43
560 561 6.088883 GCCAATTTTACAAAATCGTGAATCGT 59.911 34.615 0.63 0.00 37.62 3.73
561 562 6.457676 GCCAATTTTACAAAATCGTGAATCG 58.542 36.000 0.63 0.00 37.62 3.34
562 563 6.457676 CGCCAATTTTACAAAATCGTGAATC 58.542 36.000 0.63 0.00 37.62 2.52
563 564 5.164002 GCGCCAATTTTACAAAATCGTGAAT 60.164 36.000 0.00 0.00 37.62 2.57
564 565 4.149046 GCGCCAATTTTACAAAATCGTGAA 59.851 37.500 0.00 0.00 37.62 3.18
565 566 3.670991 GCGCCAATTTTACAAAATCGTGA 59.329 39.130 0.00 0.00 37.62 4.35
566 567 3.426859 TGCGCCAATTTTACAAAATCGTG 59.573 39.130 4.18 3.09 37.62 4.35
567 568 3.643763 TGCGCCAATTTTACAAAATCGT 58.356 36.364 4.18 0.00 37.62 3.73
568 569 4.091220 ACATGCGCCAATTTTACAAAATCG 59.909 37.500 4.18 2.48 37.62 3.34
569 570 5.529014 ACATGCGCCAATTTTACAAAATC 57.471 34.783 4.18 0.00 37.62 2.17
570 571 8.885494 ATATACATGCGCCAATTTTACAAAAT 57.115 26.923 4.18 0.00 40.15 1.82
571 572 8.709386 AATATACATGCGCCAATTTTACAAAA 57.291 26.923 4.18 0.00 0.00 2.44
572 573 8.709386 AAATATACATGCGCCAATTTTACAAA 57.291 26.923 4.18 0.00 0.00 2.83
573 574 8.194104 AGAAATATACATGCGCCAATTTTACAA 58.806 29.630 4.18 0.00 0.00 2.41
574 575 7.711846 AGAAATATACATGCGCCAATTTTACA 58.288 30.769 4.18 0.00 0.00 2.41
575 576 7.860373 TGAGAAATATACATGCGCCAATTTTAC 59.140 33.333 4.18 2.03 0.00 2.01
576 577 7.935520 TGAGAAATATACATGCGCCAATTTTA 58.064 30.769 4.18 0.00 0.00 1.52
577 578 6.804677 TGAGAAATATACATGCGCCAATTTT 58.195 32.000 4.18 0.00 0.00 1.82
578 579 6.389830 TGAGAAATATACATGCGCCAATTT 57.610 33.333 4.18 1.69 0.00 1.82
579 580 6.389830 TTGAGAAATATACATGCGCCAATT 57.610 33.333 4.18 0.00 0.00 2.32
580 581 6.349611 GGATTGAGAAATATACATGCGCCAAT 60.350 38.462 4.18 1.80 0.00 3.16
581 582 5.048782 GGATTGAGAAATATACATGCGCCAA 60.049 40.000 4.18 0.00 0.00 4.52
582 583 4.455533 GGATTGAGAAATATACATGCGCCA 59.544 41.667 4.18 0.00 0.00 5.69
583 584 4.455533 TGGATTGAGAAATATACATGCGCC 59.544 41.667 4.18 0.00 0.00 6.53
584 585 5.180117 AGTGGATTGAGAAATATACATGCGC 59.820 40.000 0.00 0.00 0.00 6.09
585 586 6.424812 TCAGTGGATTGAGAAATATACATGCG 59.575 38.462 0.00 0.00 0.00 4.73
586 587 7.443575 AGTCAGTGGATTGAGAAATATACATGC 59.556 37.037 0.00 0.00 0.00 4.06
587 588 8.899427 AGTCAGTGGATTGAGAAATATACATG 57.101 34.615 0.00 0.00 0.00 3.21
588 589 9.553064 GAAGTCAGTGGATTGAGAAATATACAT 57.447 33.333 0.00 0.00 0.00 2.29
589 590 7.706607 CGAAGTCAGTGGATTGAGAAATATACA 59.293 37.037 0.00 0.00 0.00 2.29
590 591 7.707035 ACGAAGTCAGTGGATTGAGAAATATAC 59.293 37.037 0.00 0.00 29.74 1.47
591 592 7.706607 CACGAAGTCAGTGGATTGAGAAATATA 59.293 37.037 0.00 0.00 41.61 0.86
592 593 6.536582 CACGAAGTCAGTGGATTGAGAAATAT 59.463 38.462 0.00 0.00 41.61 1.28
593 594 5.869344 CACGAAGTCAGTGGATTGAGAAATA 59.131 40.000 0.00 0.00 41.61 1.40
594 595 4.692625 CACGAAGTCAGTGGATTGAGAAAT 59.307 41.667 0.00 0.00 41.61 2.17
595 596 4.058124 CACGAAGTCAGTGGATTGAGAAA 58.942 43.478 0.00 0.00 41.61 2.52
596 597 3.069586 ACACGAAGTCAGTGGATTGAGAA 59.930 43.478 0.00 0.00 41.61 2.87
597 598 2.628178 ACACGAAGTCAGTGGATTGAGA 59.372 45.455 0.00 0.00 41.61 3.27
598 599 3.032017 ACACGAAGTCAGTGGATTGAG 57.968 47.619 0.00 0.00 41.61 3.02
599 600 3.469008 AACACGAAGTCAGTGGATTGA 57.531 42.857 0.00 0.00 41.61 2.57
600 601 3.312421 ACAAACACGAAGTCAGTGGATTG 59.688 43.478 12.30 12.30 41.61 2.67
601 602 3.541632 ACAAACACGAAGTCAGTGGATT 58.458 40.909 0.00 0.00 41.61 3.01
602 603 3.194005 ACAAACACGAAGTCAGTGGAT 57.806 42.857 0.00 0.00 41.61 3.41
603 604 2.684001 ACAAACACGAAGTCAGTGGA 57.316 45.000 0.00 0.00 41.61 4.02
604 605 4.509970 TGAATACAAACACGAAGTCAGTGG 59.490 41.667 0.00 0.00 41.61 4.00
605 606 5.234329 AGTGAATACAAACACGAAGTCAGTG 59.766 40.000 0.00 0.00 41.61 3.66
606 607 5.234329 CAGTGAATACAAACACGAAGTCAGT 59.766 40.000 0.00 0.00 41.61 3.41
607 608 5.234329 ACAGTGAATACAAACACGAAGTCAG 59.766 40.000 0.00 0.00 41.61 3.51
608 609 5.113383 ACAGTGAATACAAACACGAAGTCA 58.887 37.500 0.00 0.00 41.61 3.41
609 610 5.652744 ACAGTGAATACAAACACGAAGTC 57.347 39.130 0.00 0.00 41.61 3.01
611 612 6.062646 CGTAACAGTGAATACAAACACGAAG 58.937 40.000 0.00 0.00 41.22 3.79
612 613 5.556758 GCGTAACAGTGAATACAAACACGAA 60.557 40.000 0.00 0.00 41.22 3.85
613 614 4.084952 GCGTAACAGTGAATACAAACACGA 60.085 41.667 0.00 0.00 41.22 4.35
614 615 4.138817 GCGTAACAGTGAATACAAACACG 58.861 43.478 0.00 0.00 41.22 4.49
615 616 4.212636 AGGCGTAACAGTGAATACAAACAC 59.787 41.667 0.00 0.00 37.30 3.32
616 617 4.382291 AGGCGTAACAGTGAATACAAACA 58.618 39.130 0.00 0.00 0.00 2.83
617 618 4.449743 TGAGGCGTAACAGTGAATACAAAC 59.550 41.667 0.00 0.00 0.00 2.93
618 619 4.449743 GTGAGGCGTAACAGTGAATACAAA 59.550 41.667 0.00 0.00 0.00 2.83
619 620 3.991773 GTGAGGCGTAACAGTGAATACAA 59.008 43.478 0.00 0.00 0.00 2.41
620 621 3.581755 GTGAGGCGTAACAGTGAATACA 58.418 45.455 0.00 0.00 0.00 2.29
621 622 2.928116 GGTGAGGCGTAACAGTGAATAC 59.072 50.000 0.00 0.00 0.00 1.89
622 623 2.093869 GGGTGAGGCGTAACAGTGAATA 60.094 50.000 0.00 0.00 0.00 1.75
623 624 1.338769 GGGTGAGGCGTAACAGTGAAT 60.339 52.381 0.00 0.00 0.00 2.57
624 625 0.034337 GGGTGAGGCGTAACAGTGAA 59.966 55.000 0.00 0.00 0.00 3.18
625 626 1.116536 TGGGTGAGGCGTAACAGTGA 61.117 55.000 0.00 0.00 0.00 3.41
626 627 0.949105 GTGGGTGAGGCGTAACAGTG 60.949 60.000 0.00 0.00 0.00 3.66
627 628 1.119574 AGTGGGTGAGGCGTAACAGT 61.120 55.000 0.00 0.00 0.00 3.55
628 629 0.389948 GAGTGGGTGAGGCGTAACAG 60.390 60.000 0.00 0.00 0.00 3.16
629 630 1.669440 GAGTGGGTGAGGCGTAACA 59.331 57.895 0.00 0.00 0.00 2.41
630 631 1.445582 CGAGTGGGTGAGGCGTAAC 60.446 63.158 0.00 0.00 0.00 2.50
631 632 2.642254 CCGAGTGGGTGAGGCGTAA 61.642 63.158 0.00 0.00 0.00 3.18
632 633 3.066190 CCGAGTGGGTGAGGCGTA 61.066 66.667 0.00 0.00 0.00 4.42
633 634 4.988716 TCCGAGTGGGTGAGGCGT 62.989 66.667 0.00 0.00 37.00 5.68
634 635 4.436998 GTCCGAGTGGGTGAGGCG 62.437 72.222 0.00 0.00 37.00 5.52
635 636 4.083862 GGTCCGAGTGGGTGAGGC 62.084 72.222 0.00 0.00 37.00 4.70
636 637 1.000019 TAGGTCCGAGTGGGTGAGG 60.000 63.158 0.00 0.00 37.00 3.86
637 638 0.034380 TCTAGGTCCGAGTGGGTGAG 60.034 60.000 0.00 0.00 37.00 3.51
638 639 0.629596 ATCTAGGTCCGAGTGGGTGA 59.370 55.000 0.00 0.00 37.00 4.02
639 640 1.137086 CAATCTAGGTCCGAGTGGGTG 59.863 57.143 0.00 0.00 37.00 4.61
640 641 1.006758 TCAATCTAGGTCCGAGTGGGT 59.993 52.381 0.00 0.00 37.00 4.51
641 642 1.409427 GTCAATCTAGGTCCGAGTGGG 59.591 57.143 0.00 0.00 35.24 4.61
642 643 2.100197 TGTCAATCTAGGTCCGAGTGG 58.900 52.381 0.00 0.00 0.00 4.00
643 644 2.159226 GGTGTCAATCTAGGTCCGAGTG 60.159 54.545 0.00 0.00 0.00 3.51
644 645 2.100989 GGTGTCAATCTAGGTCCGAGT 58.899 52.381 0.00 0.00 0.00 4.18
645 646 1.409427 GGGTGTCAATCTAGGTCCGAG 59.591 57.143 0.00 0.00 0.00 4.63
646 647 1.006758 AGGGTGTCAATCTAGGTCCGA 59.993 52.381 0.00 0.00 0.00 4.55
647 648 1.486211 AGGGTGTCAATCTAGGTCCG 58.514 55.000 0.00 0.00 0.00 4.79
648 649 4.302559 AAAAGGGTGTCAATCTAGGTCC 57.697 45.455 0.00 0.00 0.00 4.46
704 705 3.896133 GATCGCCGCGTGGGACTA 61.896 66.667 18.41 0.00 38.94 2.59
837 841 9.031360 GCGGATTTCCTTCCTTTTATTATTTTC 57.969 33.333 0.00 0.00 33.30 2.29
841 845 5.240844 CGGCGGATTTCCTTCCTTTTATTAT 59.759 40.000 0.00 0.00 33.30 1.28
842 846 4.577283 CGGCGGATTTCCTTCCTTTTATTA 59.423 41.667 0.00 0.00 33.30 0.98
844 848 2.949644 CGGCGGATTTCCTTCCTTTTAT 59.050 45.455 0.00 0.00 33.30 1.40
845 849 2.361789 CGGCGGATTTCCTTCCTTTTA 58.638 47.619 0.00 0.00 33.30 1.52
846 850 1.173913 CGGCGGATTTCCTTCCTTTT 58.826 50.000 0.00 0.00 33.30 2.27
847 851 1.313091 GCGGCGGATTTCCTTCCTTT 61.313 55.000 9.78 0.00 33.30 3.11
848 852 1.749258 GCGGCGGATTTCCTTCCTT 60.749 57.895 9.78 0.00 33.30 3.36
849 853 2.124695 GCGGCGGATTTCCTTCCT 60.125 61.111 9.78 0.00 33.30 3.36
850 854 1.786049 GATGCGGCGGATTTCCTTCC 61.786 60.000 16.75 0.00 0.00 3.46
851 855 1.649267 GATGCGGCGGATTTCCTTC 59.351 57.895 16.75 0.00 0.00 3.46
914 919 0.541863 ATGAGGGAGTAAGTTGGGCG 59.458 55.000 0.00 0.00 0.00 6.13
922 927 3.371917 CCTGGCATCAAATGAGGGAGTAA 60.372 47.826 0.00 0.00 0.00 2.24
924 929 1.064166 CCTGGCATCAAATGAGGGAGT 60.064 52.381 0.00 0.00 0.00 3.85
930 935 1.927487 ACTTGCCTGGCATCAAATGA 58.073 45.000 24.03 4.31 38.76 2.57
976 987 4.301027 GGTGGCGATCGGCTAGGG 62.301 72.222 36.77 0.00 42.94 3.53
1482 2312 0.841961 CCATGCCTTCCATCTCCTCA 59.158 55.000 0.00 0.00 29.71 3.86
2085 2938 0.978146 CCTCCAGGGTCGAGTTCCAT 60.978 60.000 0.00 0.00 0.00 3.41
2292 3148 2.038975 TCCCTCACCTTCCTCCCG 59.961 66.667 0.00 0.00 0.00 5.14
2367 3223 0.323360 GCCTCCCCAATGCACAGTAA 60.323 55.000 0.00 0.00 0.00 2.24
2372 3228 1.452833 GAGAGCCTCCCCAATGCAC 60.453 63.158 0.00 0.00 0.00 4.57
2410 3266 4.317558 CGTGTTCGTCAATTACTTGTTCGT 60.318 41.667 10.59 0.00 34.83 3.85
2446 3328 1.884579 GACGGGAACACTCACACTCTA 59.115 52.381 0.00 0.00 0.00 2.43
2510 3398 1.674221 CCGCAAGTCCCAAAGAGAGAG 60.674 57.143 0.00 0.00 0.00 3.20
2511 3399 0.321671 CCGCAAGTCCCAAAGAGAGA 59.678 55.000 0.00 0.00 0.00 3.10
2512 3400 0.674895 CCCGCAAGTCCCAAAGAGAG 60.675 60.000 0.00 0.00 0.00 3.20
2532 3420 3.350219 AAAATAAGCGGAGAGAAGCCA 57.650 42.857 0.00 0.00 0.00 4.75
2545 3433 6.358822 GGAACGAACAAGAACGGAAAAATAAG 59.641 38.462 0.00 0.00 0.00 1.73
2549 3437 3.439476 TGGAACGAACAAGAACGGAAAAA 59.561 39.130 0.00 0.00 0.00 1.94
2565 3453 3.055385 TCAGGAGAAAGGGTAATGGAACG 60.055 47.826 0.00 0.00 0.00 3.95
2567 3455 3.265995 GGTCAGGAGAAAGGGTAATGGAA 59.734 47.826 0.00 0.00 0.00 3.53
2574 3464 0.104409 ACCAGGTCAGGAGAAAGGGT 60.104 55.000 0.00 0.00 0.00 4.34
2592 3482 5.106948 CGATATGTTGGCATGATTACCAGAC 60.107 44.000 0.00 0.00 37.24 3.51
2652 3542 7.637511 AGAAGATAGGATCAGACCAAACAAAT 58.362 34.615 0.00 0.00 0.00 2.32
2653 3543 7.020827 AGAAGATAGGATCAGACCAAACAAA 57.979 36.000 0.00 0.00 0.00 2.83
2783 3911 3.119637 GCCCGCTTTGCTTCTTTTGTATA 60.120 43.478 0.00 0.00 0.00 1.47
2784 3912 2.352715 GCCCGCTTTGCTTCTTTTGTAT 60.353 45.455 0.00 0.00 0.00 2.29
2787 3924 0.249405 TGCCCGCTTTGCTTCTTTTG 60.249 50.000 0.00 0.00 0.00 2.44
2926 4544 7.333423 CCTAAATTAAGAACATCTGTCGAACCA 59.667 37.037 0.00 0.00 0.00 3.67
2928 4546 8.381387 GTCCTAAATTAAGAACATCTGTCGAAC 58.619 37.037 0.00 0.00 0.00 3.95
2960 4578 2.868583 CAACACGAGAGGCCAAGATATG 59.131 50.000 5.01 0.00 0.00 1.78
2995 4613 0.538516 TTTTGTGGCAGCCGTATGGT 60.539 50.000 7.03 0.00 37.67 3.55
2998 4616 1.323412 TTGTTTTGTGGCAGCCGTAT 58.677 45.000 7.03 0.00 0.00 3.06
2999 4617 1.103803 TTTGTTTTGTGGCAGCCGTA 58.896 45.000 7.03 0.00 0.00 4.02
3044 4662 3.570125 TGTAGAAGGAGGAGTATCATGCG 59.430 47.826 0.00 0.00 43.88 4.73
3051 4669 1.005097 TGCGGTGTAGAAGGAGGAGTA 59.995 52.381 0.00 0.00 0.00 2.59
3072 4690 2.256461 CAAGGCAGTGAAAGCGGC 59.744 61.111 0.00 0.00 0.00 6.53
3094 4712 1.262950 TGGTTGAATTCGACAGCAACG 59.737 47.619 24.11 0.00 41.00 4.10
3164 4782 3.924073 CACTATTAAGCACACACTACGCA 59.076 43.478 0.00 0.00 0.00 5.24
3166 4784 4.265556 GCTCACTATTAAGCACACACTACG 59.734 45.833 0.00 0.00 38.42 3.51
3181 4799 4.101645 AGTACTACGATGGGCTCACTAT 57.898 45.455 0.00 0.00 0.00 2.12
3195 4813 8.503458 TGGTAGACTCACTATGAAAGTACTAC 57.497 38.462 0.00 0.00 35.76 2.73
3235 4853 9.442047 AACCAAATGTTCAAACTTAAACATGAA 57.558 25.926 0.00 0.00 43.45 2.57
3281 4900 7.929159 TGCATCGTAATAAACATGATCATTGT 58.071 30.769 5.16 5.26 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.