Multiple sequence alignment - TraesCS1B01G360700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G360700 chr1B 100.000 4789 0 0 1 4789 589074583 589069795 0.000000e+00 8844.0
1 TraesCS1B01G360700 chr1B 77.632 152 29 5 4490 4639 78455148 78455296 2.370000e-13 87.9
2 TraesCS1B01G360700 chr1B 93.878 49 2 1 4723 4770 589069967 589069919 6.650000e-09 73.1
3 TraesCS1B01G360700 chr1B 92.500 40 3 0 4643 4682 245953922 245953883 1.860000e-04 58.4
4 TraesCS1B01G360700 chr1D 91.579 4109 137 71 635 4639 435759547 435755544 0.000000e+00 5478.0
5 TraesCS1B01G360700 chr1D 92.055 579 19 10 86 644 435760149 435759578 0.000000e+00 789.0
6 TraesCS1B01G360700 chr1D 92.857 70 5 0 4643 4712 435755204 435755135 8.480000e-18 102.0
7 TraesCS1B01G360700 chr1D 93.617 47 2 1 1 47 435760596 435760551 8.600000e-08 69.4
8 TraesCS1B01G360700 chr4D 89.314 2639 135 48 96 2632 138697404 138699997 0.000000e+00 3175.0
9 TraesCS1B01G360700 chr4D 88.617 1309 90 34 2723 4008 138700022 138701294 0.000000e+00 1537.0
10 TraesCS1B01G360700 chr4D 93.699 492 20 5 4001 4489 138703558 138704041 0.000000e+00 726.0
11 TraesCS1B01G360700 chr4D 90.370 135 11 2 4509 4641 362219639 362219773 4.930000e-40 176.0
12 TraesCS1B01G360700 chr4D 97.674 43 1 0 1 43 138697054 138697096 1.850000e-09 75.0
13 TraesCS1B01G360700 chr4D 94.444 36 2 0 4655 4690 85007168 85007133 6.700000e-04 56.5
14 TraesCS1B01G360700 chr4A 89.168 997 58 16 1071 2038 415866093 415865118 0.000000e+00 1197.0
15 TraesCS1B01G360700 chr4A 89.091 715 51 13 3223 3933 415859044 415858353 0.000000e+00 863.0
16 TraesCS1B01G360700 chr4A 94.253 522 28 2 2112 2632 415862481 415861961 0.000000e+00 797.0
17 TraesCS1B01G360700 chr4A 84.976 832 51 40 184 971 415866924 415866123 0.000000e+00 776.0
18 TraesCS1B01G360700 chr4A 94.428 341 13 2 4150 4490 415857674 415857340 1.980000e-143 520.0
19 TraesCS1B01G360700 chr4A 84.692 503 41 20 2754 3231 415861904 415861413 2.020000e-128 470.0
20 TraesCS1B01G360700 chr4A 91.716 338 21 3 3917 4251 415858051 415857718 3.380000e-126 462.0
21 TraesCS1B01G360700 chr4A 92.157 102 7 1 4150 4251 415857746 415857646 5.000000e-30 143.0
22 TraesCS1B01G360700 chr4A 94.737 57 3 0 1 57 415881255 415881199 6.600000e-14 89.8
23 TraesCS1B01G360700 chr4B 87.119 722 61 20 1655 2371 227248311 227249005 0.000000e+00 789.0
24 TraesCS1B01G360700 chr4B 88.035 677 64 6 3394 4067 227283867 227284529 0.000000e+00 785.0
25 TraesCS1B01G360700 chr4B 87.910 488 33 8 1183 1653 227244359 227244837 7.000000e-153 551.0
26 TraesCS1B01G360700 chr4B 84.865 555 55 15 641 1179 227242540 227243081 2.540000e-147 532.0
27 TraesCS1B01G360700 chr4B 92.857 266 18 1 2367 2632 227270174 227270438 7.520000e-103 385.0
28 TraesCS1B01G360700 chr4B 78.378 703 67 38 1 644 227241826 227242502 1.260000e-100 377.0
29 TraesCS1B01G360700 chr4B 87.725 334 26 8 2754 3085 227270562 227270882 4.520000e-100 375.0
30 TraesCS1B01G360700 chr4B 89.583 48 5 0 4643 4690 122218115 122218068 1.440000e-05 62.1
31 TraesCS1B01G360700 chr2D 93.130 131 9 0 4509 4639 218046973 218046843 4.890000e-45 193.0
32 TraesCS1B01G360700 chr2D 91.603 131 11 0 4509 4639 299891700 299891570 1.060000e-41 182.0
33 TraesCS1B01G360700 chr2D 95.238 42 2 0 4646 4687 372929862 372929903 3.090000e-07 67.6
34 TraesCS1B01G360700 chr2A 93.130 131 9 0 4509 4639 324614940 324615070 4.890000e-45 193.0
35 TraesCS1B01G360700 chr2A 83.117 154 18 6 4490 4639 116706021 116705872 3.010000e-27 134.0
36 TraesCS1B01G360700 chr2A 95.122 41 2 0 4647 4687 504339115 504339075 1.110000e-06 65.8
37 TraesCS1B01G360700 chrUn 90.370 135 11 2 4509 4641 468072490 468072624 4.930000e-40 176.0
38 TraesCS1B01G360700 chr6D 90.370 135 11 2 4509 4641 441944539 441944673 4.930000e-40 176.0
39 TraesCS1B01G360700 chr6D 97.727 44 1 0 4643 4686 61192469 61192512 5.140000e-10 76.8
40 TraesCS1B01G360700 chr6D 90.476 42 4 0 4645 4686 81743055 81743014 6.700000e-04 56.5
41 TraesCS1B01G360700 chr5D 90.370 135 11 2 4509 4641 471161300 471161434 4.930000e-40 176.0
42 TraesCS1B01G360700 chr5B 90.299 134 12 1 4507 4639 554821180 554821047 1.770000e-39 174.0
43 TraesCS1B01G360700 chr5B 83.553 152 21 4 4490 4639 630071560 630071709 6.460000e-29 139.0
44 TraesCS1B01G360700 chr5B 95.652 46 1 1 2052 2096 53659775 53659820 6.650000e-09 73.1
45 TraesCS1B01G360700 chr6B 83.974 156 21 4 4490 4642 112883214 112883060 3.860000e-31 147.0
46 TraesCS1B01G360700 chr3B 83.553 152 19 6 4490 4639 438319546 438319399 2.320000e-28 137.0
47 TraesCS1B01G360700 chr3B 97.826 46 1 0 2051 2096 680423292 680423337 3.970000e-11 80.5
48 TraesCS1B01G360700 chr5A 82.237 152 23 4 4490 4639 380307899 380307750 1.400000e-25 128.0
49 TraesCS1B01G360700 chr5A 95.652 46 1 1 2052 2096 40100264 40100309 6.650000e-09 73.1
50 TraesCS1B01G360700 chr7B 87.500 104 11 2 4489 4590 384850595 384850492 8.420000e-23 119.0
51 TraesCS1B01G360700 chr7B 84.848 66 6 4 4628 4690 15038118 15038182 4.000000e-06 63.9
52 TraesCS1B01G360700 chr2B 82.692 104 16 2 4489 4590 151714804 151714701 1.840000e-14 91.6
53 TraesCS1B01G360700 chr2B 88.136 59 6 1 2039 2096 763631610 763631552 8.600000e-08 69.4
54 TraesCS1B01G360700 chr7D 97.561 41 1 0 2057 2097 21789208 21789168 2.390000e-08 71.3
55 TraesCS1B01G360700 chr1A 95.455 44 2 0 2053 2096 379498265 379498308 2.390000e-08 71.3
56 TraesCS1B01G360700 chr7A 84.615 65 8 2 4628 4690 77202159 77202223 4.000000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G360700 chr1B 589069795 589074583 4788 True 8844.00 8844 100.000000 1 4789 1 chr1B.!!$R2 4788
1 TraesCS1B01G360700 chr1D 435755135 435760596 5461 True 1609.60 5478 92.527000 1 4712 4 chr1D.!!$R1 4711
2 TraesCS1B01G360700 chr4D 138697054 138704041 6987 False 1378.25 3175 92.326000 1 4489 4 chr4D.!!$F2 4488
3 TraesCS1B01G360700 chr4A 415857340 415866924 9584 True 653.50 1197 90.060125 184 4490 8 chr4A.!!$R2 4306
4 TraesCS1B01G360700 chr4B 227283867 227284529 662 False 785.00 785 88.035000 3394 4067 1 chr4B.!!$F1 673
5 TraesCS1B01G360700 chr4B 227241826 227249005 7179 False 562.25 789 84.568000 1 2371 4 chr4B.!!$F2 2370
6 TraesCS1B01G360700 chr4B 227270174 227270882 708 False 380.00 385 90.291000 2367 3085 2 chr4B.!!$F3 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 837 0.035056 GCTGCATTGTAGTGAGGGGT 60.035 55.0 3.64 0.00 0.0 4.95 F
1144 1651 0.040499 AGACCACCACTCTCCTCTCC 59.960 60.0 0.00 0.00 0.0 3.71 F
2337 10249 0.320421 CACTGGTGGGTTGGTCTACG 60.320 60.0 0.00 0.00 0.0 3.51 F
3377 13807 0.535780 ATGTTGATGATGCCGCGGAT 60.536 50.0 33.48 19.72 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2337 10249 1.006922 GCACAAGCTGAAACCCTGC 60.007 57.895 0.00 0.0 39.67 4.85 R
3083 11101 0.264657 AGTGGGGCCTTTGGTTCTTT 59.735 50.000 0.84 0.0 0.00 2.52 R
3530 13960 0.039074 CGCCGGGCTTAGATGAGTAG 60.039 60.000 18.34 0.0 0.00 2.57 R
4301 17495 1.821759 CCAACACTTGTGCGGTCCA 60.822 57.895 0.10 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.896465 ACTGTCTCTTGCCTGGACTAC 59.104 52.381 0.00 0.00 0.00 2.73
52 53 0.321034 TGCAGCAGTAGCAGACTTGG 60.321 55.000 0.00 0.00 45.49 3.61
57 58 1.719600 CAGTAGCAGACTTGGAGTGC 58.280 55.000 0.00 0.00 35.64 4.40
71 99 1.956477 GGAGTGCTCCTCTCTCTCATC 59.044 57.143 10.80 0.00 46.16 2.92
74 102 0.105760 TGCTCCTCTCTCTCATCCCC 60.106 60.000 0.00 0.00 0.00 4.81
78 368 2.433970 CTCCTCTCTCTCATCCCCAAAC 59.566 54.545 0.00 0.00 0.00 2.93
79 369 2.191400 CCTCTCTCTCATCCCCAAACA 58.809 52.381 0.00 0.00 0.00 2.83
80 370 2.573462 CCTCTCTCTCATCCCCAAACAA 59.427 50.000 0.00 0.00 0.00 2.83
81 371 3.604582 CTCTCTCTCATCCCCAAACAAC 58.395 50.000 0.00 0.00 0.00 3.32
82 372 2.978978 TCTCTCTCATCCCCAAACAACA 59.021 45.455 0.00 0.00 0.00 3.33
83 373 3.008375 TCTCTCTCATCCCCAAACAACAG 59.992 47.826 0.00 0.00 0.00 3.16
84 374 2.711009 TCTCTCATCCCCAAACAACAGT 59.289 45.455 0.00 0.00 0.00 3.55
246 614 1.536709 CCTTTGCTTGTGTGCTGTTCC 60.537 52.381 0.00 0.00 0.00 3.62
291 659 2.360165 GCATTCTTGTGGCTTGGGATAG 59.640 50.000 0.00 0.00 0.00 2.08
402 774 3.564644 CAGCTTTAGCCATCAAGATCCAG 59.435 47.826 0.00 0.00 43.38 3.86
403 775 2.292845 GCTTTAGCCATCAAGATCCAGC 59.707 50.000 0.00 0.00 34.31 4.85
413 796 2.297033 TCAAGATCCAGCACCAAAAAGC 59.703 45.455 0.00 0.00 0.00 3.51
437 836 0.254178 AGCTGCATTGTAGTGAGGGG 59.746 55.000 1.02 0.00 0.00 4.79
438 837 0.035056 GCTGCATTGTAGTGAGGGGT 60.035 55.000 3.64 0.00 0.00 4.95
439 838 1.614317 GCTGCATTGTAGTGAGGGGTT 60.614 52.381 3.64 0.00 0.00 4.11
440 839 2.086869 CTGCATTGTAGTGAGGGGTTG 58.913 52.381 0.00 0.00 0.00 3.77
441 840 1.423541 TGCATTGTAGTGAGGGGTTGT 59.576 47.619 0.00 0.00 0.00 3.32
442 841 2.084546 GCATTGTAGTGAGGGGTTGTC 58.915 52.381 0.00 0.00 0.00 3.18
497 921 7.177568 TCCTCATATTATCTGTCCTTACTCTGC 59.822 40.741 0.00 0.00 0.00 4.26
499 923 7.013220 TCATATTATCTGTCCTTACTCTGCCT 58.987 38.462 0.00 0.00 0.00 4.75
600 1026 4.638421 CAGACTCTCCTCAAGGTACTAGTG 59.362 50.000 5.39 0.00 38.49 2.74
601 1027 3.358118 ACTCTCCTCAAGGTACTAGTGC 58.642 50.000 5.39 3.50 38.49 4.40
609 1035 7.779073 TCCTCAAGGTACTAGTGCTAAATTAC 58.221 38.462 10.95 0.00 38.49 1.89
694 1163 6.274672 TCCTATATTAATTGGGTCCAAGAGGG 59.725 42.308 8.49 2.92 39.47 4.30
699 1168 1.205460 TTGGGTCCAAGAGGGGCTAC 61.205 60.000 0.00 0.00 42.62 3.58
731 1200 9.956720 CAACAATCATAAGGTATTGGAGAAATC 57.043 33.333 0.00 0.00 37.40 2.17
765 1234 6.569127 TGTTATTTAGCTGGGTAGATTCCA 57.431 37.500 0.00 0.00 0.00 3.53
780 1249 7.990886 GGGTAGATTCCATTTGAAGTACACATA 59.009 37.037 0.00 0.00 36.14 2.29
781 1250 9.561069 GGTAGATTCCATTTGAAGTACACATAT 57.439 33.333 0.00 0.00 36.14 1.78
784 1253 9.685276 AGATTCCATTTGAAGTACACATATTGA 57.315 29.630 0.00 0.00 36.14 2.57
808 1277 2.202987 GATGTCCTCCTGCCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
830 1299 0.745486 GGGCCAATCATTGCAAAGGC 60.745 55.000 4.39 16.86 41.29 4.35
963 1443 3.451902 AGATGAAGCTTCTCTGAGGAAGG 59.548 47.826 26.09 0.00 41.93 3.46
964 1444 2.894731 TGAAGCTTCTCTGAGGAAGGA 58.105 47.619 26.09 0.00 41.93 3.36
965 1445 3.242867 TGAAGCTTCTCTGAGGAAGGAA 58.757 45.455 26.09 0.00 41.93 3.36
966 1446 3.260380 TGAAGCTTCTCTGAGGAAGGAAG 59.740 47.826 26.09 2.28 41.93 3.46
967 1447 2.187100 AGCTTCTCTGAGGAAGGAAGG 58.813 52.381 4.59 0.00 41.93 3.46
968 1448 2.183679 GCTTCTCTGAGGAAGGAAGGA 58.816 52.381 4.59 0.00 41.93 3.36
969 1449 2.569404 GCTTCTCTGAGGAAGGAAGGAA 59.431 50.000 4.59 0.00 41.93 3.36
970 1450 3.369366 GCTTCTCTGAGGAAGGAAGGAAG 60.369 52.174 4.59 0.00 41.93 3.46
971 1451 2.826488 TCTCTGAGGAAGGAAGGAAGG 58.174 52.381 4.59 0.00 0.00 3.46
972 1452 2.383683 TCTCTGAGGAAGGAAGGAAGGA 59.616 50.000 4.59 0.00 0.00 3.36
973 1453 3.177228 CTCTGAGGAAGGAAGGAAGGAA 58.823 50.000 0.00 0.00 0.00 3.36
974 1454 3.177228 TCTGAGGAAGGAAGGAAGGAAG 58.823 50.000 0.00 0.00 0.00 3.46
975 1455 3.177228 CTGAGGAAGGAAGGAAGGAAGA 58.823 50.000 0.00 0.00 0.00 2.87
976 1456 3.584848 CTGAGGAAGGAAGGAAGGAAGAA 59.415 47.826 0.00 0.00 0.00 2.52
1141 1648 1.273886 GTTGAGACCACCACTCTCCTC 59.726 57.143 0.00 0.00 34.33 3.71
1142 1649 0.780637 TGAGACCACCACTCTCCTCT 59.219 55.000 0.00 0.00 34.33 3.69
1143 1650 1.272203 TGAGACCACCACTCTCCTCTC 60.272 57.143 0.00 0.00 34.33 3.20
1144 1651 0.040499 AGACCACCACTCTCCTCTCC 59.960 60.000 0.00 0.00 0.00 3.71
1145 1652 0.040499 GACCACCACTCTCCTCTCCT 59.960 60.000 0.00 0.00 0.00 3.69
1188 2969 5.748592 GTGATGATTCACCGGCTAAATAAC 58.251 41.667 0.00 0.00 45.45 1.89
1191 2972 4.116961 TGATTCACCGGCTAAATAACTCG 58.883 43.478 0.00 0.00 0.00 4.18
1259 3040 1.144936 GAGGCATCTCAACCGGAGG 59.855 63.158 9.46 0.00 46.92 4.30
1484 3283 3.654414 ACTGTCGAACAAGAGAACATCC 58.346 45.455 0.00 0.00 0.00 3.51
1537 3336 2.813754 CAGTGTTGATCGGGTGTTTGAT 59.186 45.455 0.00 0.00 0.00 2.57
1592 3397 1.508632 TCACTACCTTTTCACTGCGC 58.491 50.000 0.00 0.00 0.00 6.09
1612 3417 5.024555 GCGCATCTATCTTTTTCAAGTGTC 58.975 41.667 0.30 0.00 0.00 3.67
1789 7088 6.839124 TTGAATTCAAGGCAATGTCTGTAT 57.161 33.333 16.91 0.00 0.00 2.29
1824 7123 2.226674 GTCCTTGGAAACTGCTAACTGC 59.773 50.000 0.00 0.00 43.25 4.40
1825 7124 2.106511 TCCTTGGAAACTGCTAACTGCT 59.893 45.455 0.00 0.00 43.37 4.24
1826 7125 2.227388 CCTTGGAAACTGCTAACTGCTG 59.773 50.000 0.00 0.00 44.70 4.41
1887 7186 1.285578 GAGCGATTCAGGAGCTGTTC 58.714 55.000 0.00 0.00 41.84 3.18
1947 7246 2.617308 CTCCATAAGCATGCTTGAGGTG 59.383 50.000 37.21 30.81 37.47 4.00
2049 9945 0.813184 GACCCATCAATGCACCTGTG 59.187 55.000 0.00 0.00 0.00 3.66
2055 9951 4.342951 CCCATCAATGCACCTGTGAATTAT 59.657 41.667 3.20 0.00 36.72 1.28
2239 10151 1.404315 GCAGTACCGGACCTCAAGAAG 60.404 57.143 9.46 0.00 0.00 2.85
2337 10249 0.320421 CACTGGTGGGTTGGTCTACG 60.320 60.000 0.00 0.00 0.00 3.51
2341 10253 1.375523 GTGGGTTGGTCTACGCAGG 60.376 63.158 3.04 0.00 40.97 4.85
2363 10275 3.558505 GTTTCAGCTTGTGCAGTATGTG 58.441 45.455 0.00 0.00 42.74 3.21
2712 10628 6.016192 CGGACTAGCAGTTCCTTCATATCTTA 60.016 42.308 0.00 0.00 0.00 2.10
2748 10664 5.356882 TTTTGATGCTTCAAGTTACCTCG 57.643 39.130 13.97 0.00 42.60 4.63
2817 10822 2.941720 CAAGCTTACCCAGATTCTCAGC 59.058 50.000 0.00 0.00 0.00 4.26
2881 10899 5.048083 TGAAGCATCAAATGTGGAAACCTAC 60.048 40.000 0.00 0.00 30.99 3.18
3067 11085 8.887264 TTCAGAGGTAAGAAGAAGACTAAGAT 57.113 34.615 0.00 0.00 0.00 2.40
3068 11086 8.514330 TCAGAGGTAAGAAGAAGACTAAGATC 57.486 38.462 0.00 0.00 0.00 2.75
3070 11088 7.281324 CAGAGGTAAGAAGAAGACTAAGATCGA 59.719 40.741 0.00 0.00 0.00 3.59
3071 11089 7.497909 AGAGGTAAGAAGAAGACTAAGATCGAG 59.502 40.741 0.00 0.00 0.00 4.04
3072 11090 6.544564 AGGTAAGAAGAAGACTAAGATCGAGG 59.455 42.308 0.00 0.00 0.00 4.63
3073 11091 5.845391 AAGAAGAAGACTAAGATCGAGGG 57.155 43.478 0.00 0.00 0.00 4.30
3074 11092 4.862371 AGAAGAAGACTAAGATCGAGGGT 58.138 43.478 0.00 0.00 0.00 4.34
3075 11093 4.642885 AGAAGAAGACTAAGATCGAGGGTG 59.357 45.833 0.00 0.00 0.00 4.61
3076 11094 4.237976 AGAAGACTAAGATCGAGGGTGA 57.762 45.455 0.00 0.00 0.00 4.02
3077 11095 4.601084 AGAAGACTAAGATCGAGGGTGAA 58.399 43.478 0.00 0.00 0.00 3.18
3082 11100 5.068460 AGACTAAGATCGAGGGTGAATGAAG 59.932 44.000 0.00 0.00 0.00 3.02
3083 11101 4.956700 ACTAAGATCGAGGGTGAATGAAGA 59.043 41.667 0.00 0.00 0.00 2.87
3109 11162 1.474330 CAAAGGCCCCACTATTCACC 58.526 55.000 0.00 0.00 0.00 4.02
3239 13669 0.539051 AGCTCGGGGTTCTGAATGAG 59.461 55.000 0.00 1.06 0.00 2.90
3251 13681 5.449725 GGTTCTGAATGAGCAAATAAGGAGC 60.450 44.000 0.00 0.00 0.00 4.70
3262 13692 2.061182 ATAAGGAGCGCCGAGACGTC 62.061 60.000 7.70 7.70 39.96 4.34
3300 13730 1.720694 GAAGCTCTCTCCCTCCGTCG 61.721 65.000 0.00 0.00 0.00 5.12
3301 13731 3.894947 GCTCTCTCCCTCCGTCGC 61.895 72.222 0.00 0.00 0.00 5.19
3302 13732 3.213402 CTCTCTCCCTCCGTCGCC 61.213 72.222 0.00 0.00 0.00 5.54
3359 13789 0.682209 GCATTCTGGTGTCAGGGCAT 60.682 55.000 0.00 0.00 41.23 4.40
3360 13790 1.100510 CATTCTGGTGTCAGGGCATG 58.899 55.000 0.00 0.00 41.23 4.06
3367 13797 1.614051 GGTGTCAGGGCATGTTGATGA 60.614 52.381 0.00 0.00 0.00 2.92
3368 13798 2.372264 GTGTCAGGGCATGTTGATGAT 58.628 47.619 0.00 0.00 0.00 2.45
3369 13799 2.098607 GTGTCAGGGCATGTTGATGATG 59.901 50.000 0.00 0.00 0.00 3.07
3377 13807 0.535780 ATGTTGATGATGCCGCGGAT 60.536 50.000 33.48 19.72 0.00 4.18
3414 13844 1.617536 AGGGCCAAGAGCAGGATGA 60.618 57.895 6.18 0.00 46.50 2.92
3415 13845 0.992431 AGGGCCAAGAGCAGGATGAT 60.992 55.000 6.18 0.00 46.50 2.45
3416 13846 0.822532 GGGCCAAGAGCAGGATGATG 60.823 60.000 4.39 0.00 46.50 3.07
3473 13903 2.639286 GTGTGCAGCCGTCAAAGG 59.361 61.111 0.00 0.00 0.00 3.11
3530 13960 1.795768 TGACAAGATCAGTGAACGCC 58.204 50.000 0.00 0.00 31.91 5.68
3548 13978 0.318762 CCTACTCATCTAAGCCCGGC 59.681 60.000 0.00 0.00 0.00 6.13
3593 14023 0.249073 CATCCAAGGCTAGGTCGTCG 60.249 60.000 0.00 0.00 0.00 5.12
3644 14074 6.317857 GCTGAAATACTTGTCTGTCAAATCC 58.682 40.000 0.00 0.00 35.48 3.01
3719 14149 4.168291 CCTCGGCCAAGGGAGAGC 62.168 72.222 0.00 0.00 32.35 4.09
3829 14269 6.665465 CATACAGATTGCATACCACTGATTG 58.335 40.000 0.00 0.00 33.53 2.67
3848 14288 1.203523 TGTGACTTGTTGTTTGGTGGC 59.796 47.619 0.00 0.00 0.00 5.01
3861 14301 1.500474 TGGTGGCCAAATGTTTTGGA 58.500 45.000 20.36 0.46 42.06 3.53
3864 14304 2.616376 GGTGGCCAAATGTTTTGGAAAC 59.384 45.455 20.36 15.88 42.06 2.78
3865 14305 3.540617 GTGGCCAAATGTTTTGGAAACT 58.459 40.909 20.36 0.00 42.06 2.66
3866 14306 4.443598 GGTGGCCAAATGTTTTGGAAACTA 60.444 41.667 20.36 1.17 42.06 2.24
3867 14307 4.509970 GTGGCCAAATGTTTTGGAAACTAC 59.490 41.667 20.36 8.83 42.06 2.73
3887 14327 4.292186 ACCATGTCTACAGCTGTTTGAT 57.708 40.909 27.06 9.45 0.00 2.57
3888 14328 5.420725 ACCATGTCTACAGCTGTTTGATA 57.579 39.130 27.06 20.59 0.00 2.15
3889 14329 5.804639 ACCATGTCTACAGCTGTTTGATAA 58.195 37.500 27.06 15.36 0.00 1.75
3890 14330 5.877012 ACCATGTCTACAGCTGTTTGATAAG 59.123 40.000 27.06 15.18 0.00 1.73
4019 17058 9.487790 AAATGTTGTAACTGTAATTGGATTTGG 57.512 29.630 0.00 0.00 0.00 3.28
4025 17064 9.030452 TGTAACTGTAATTGGATTTGGCTAATT 57.970 29.630 0.00 0.00 34.10 1.40
4073 17118 9.780413 TGTAATTTGAAAAGGAAAAACAAATGC 57.220 25.926 0.00 0.00 39.81 3.56
4168 17285 6.100279 TGCATGGATTATCCTAGGGTCATATC 59.900 42.308 12.91 6.09 37.46 1.63
4209 17331 6.780457 AAAATATTCCAGGGTCACATTCTG 57.220 37.500 0.00 0.00 0.00 3.02
4301 17495 4.351874 TTTAGCTGCACCTCAGTTTACT 57.648 40.909 1.02 0.00 44.66 2.24
4342 17536 5.635700 GGATGTCACTACTCTTTCACTGAAC 59.364 44.000 0.00 0.00 0.00 3.18
4363 17557 4.514401 ACCTGCATACCTTAGTTGCTAAC 58.486 43.478 0.00 0.00 37.28 2.34
4493 17687 4.035208 GCAAGTATATGCAACTGGGTGTAC 59.965 45.833 0.00 0.00 45.70 2.90
4503 17697 4.934989 GGGTGTACTACTGCAGCC 57.065 61.111 15.27 4.52 44.42 4.85
4504 17698 1.221021 GGGTGTACTACTGCAGCCC 59.779 63.158 15.27 10.74 44.78 5.19
4505 17699 1.550130 GGGTGTACTACTGCAGCCCA 61.550 60.000 15.27 0.12 44.78 5.36
4506 17700 0.391263 GGTGTACTACTGCAGCCCAC 60.391 60.000 15.27 12.71 0.00 4.61
4507 17701 0.608640 GTGTACTACTGCAGCCCACT 59.391 55.000 15.27 0.00 0.00 4.00
4516 17735 7.079451 ACTACTGCAGCCCACTTAAATATAT 57.921 36.000 15.27 0.00 0.00 0.86
4521 17740 6.364701 TGCAGCCCACTTAAATATATGTCTT 58.635 36.000 0.00 0.00 0.00 3.01
4550 17769 6.952358 AGAGACTACAAAAGGGACTACATACA 59.048 38.462 0.00 0.00 38.49 2.29
4551 17770 7.620094 AGAGACTACAAAAGGGACTACATACAT 59.380 37.037 0.00 0.00 38.49 2.29
4565 17784 7.710907 GGACTACATACATAGCAAAATGAGTGA 59.289 37.037 1.26 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.725686 GTCTGCTACTGCTGCATGTG 59.274 55.000 1.31 0.00 39.86 3.21
52 53 1.956477 GGATGAGAGAGAGGAGCACTC 59.044 57.143 0.53 0.53 46.98 3.51
57 58 2.433970 GTTTGGGGATGAGAGAGAGGAG 59.566 54.545 0.00 0.00 0.00 3.69
71 99 1.688197 AGATGCAACTGTTGTTTGGGG 59.312 47.619 20.57 0.00 33.52 4.96
74 102 3.847037 GCAAGATGCAACTGTTGTTTG 57.153 42.857 20.57 18.37 44.26 2.93
206 574 1.791204 GTAAGCTATACGCCGGAAAGC 59.209 52.381 5.05 5.67 40.39 3.51
226 594 1.536709 GGAACAGCACACAAGCAAAGG 60.537 52.381 0.00 0.00 36.85 3.11
246 614 2.941720 GCTCTGGCTTTATTCCACTCAG 59.058 50.000 0.00 0.00 35.22 3.35
262 630 0.167470 CCACAAGAATGCACGCTCTG 59.833 55.000 0.00 0.00 0.00 3.35
402 774 2.904664 GCTCAAGGCTTTTTGGTGC 58.095 52.632 0.00 0.00 38.06 5.01
413 796 2.676839 CTCACTACAATGCAGCTCAAGG 59.323 50.000 0.00 0.00 0.00 3.61
437 836 2.427506 CAAGCTAGGGGACAAGACAAC 58.572 52.381 0.00 0.00 0.00 3.32
438 837 1.351017 CCAAGCTAGGGGACAAGACAA 59.649 52.381 0.00 0.00 0.00 3.18
439 838 0.984230 CCAAGCTAGGGGACAAGACA 59.016 55.000 0.00 0.00 0.00 3.41
440 839 0.393132 GCCAAGCTAGGGGACAAGAC 60.393 60.000 6.49 0.00 0.00 3.01
441 840 0.547712 AGCCAAGCTAGGGGACAAGA 60.548 55.000 6.49 0.00 36.99 3.02
442 841 0.107459 GAGCCAAGCTAGGGGACAAG 60.107 60.000 6.49 0.00 39.88 3.16
497 921 5.353678 GTGTTCTTGATCTTTGATCTGGAGG 59.646 44.000 8.71 0.00 0.00 4.30
499 923 5.868454 TGTGTTCTTGATCTTTGATCTGGA 58.132 37.500 8.71 4.69 0.00 3.86
581 1006 3.626930 AGCACTAGTACCTTGAGGAGAG 58.373 50.000 3.59 0.00 38.94 3.20
600 1026 3.625764 TCACCAATCCAGCGTAATTTAGC 59.374 43.478 0.00 0.00 0.00 3.09
601 1027 5.760253 AGATCACCAATCCAGCGTAATTTAG 59.240 40.000 0.00 0.00 34.67 1.85
609 1035 2.636830 AGAAAGATCACCAATCCAGCG 58.363 47.619 0.00 0.00 34.67 5.18
694 1163 5.278169 CCTTATGATTGTTGCATCTGTAGCC 60.278 44.000 0.00 0.00 0.00 3.93
699 1168 7.013559 TCCAATACCTTATGATTGTTGCATCTG 59.986 37.037 0.00 0.00 32.22 2.90
731 1200 9.120538 ACCCAGCTAAATAACATTAAGTACATG 57.879 33.333 0.00 0.00 0.00 3.21
780 1249 5.537674 GGCAGGAGGACATCAATAATTCAAT 59.462 40.000 0.00 0.00 0.00 2.57
781 1250 4.889409 GGCAGGAGGACATCAATAATTCAA 59.111 41.667 0.00 0.00 0.00 2.69
782 1251 4.166725 AGGCAGGAGGACATCAATAATTCA 59.833 41.667 0.00 0.00 0.00 2.57
783 1252 4.518211 CAGGCAGGAGGACATCAATAATTC 59.482 45.833 0.00 0.00 0.00 2.17
784 1253 4.467769 CAGGCAGGAGGACATCAATAATT 58.532 43.478 0.00 0.00 0.00 1.40
787 1256 1.141657 GCAGGCAGGAGGACATCAATA 59.858 52.381 0.00 0.00 0.00 1.90
808 1277 2.159057 CCTTTGCAATGATTGGCCCTAC 60.159 50.000 13.58 0.00 0.00 3.18
963 1443 4.905429 AGCTTCTTCTTCTTCCTTCCTTC 58.095 43.478 0.00 0.00 0.00 3.46
964 1444 4.597075 AGAGCTTCTTCTTCTTCCTTCCTT 59.403 41.667 0.00 0.00 0.00 3.36
965 1445 4.167319 AGAGCTTCTTCTTCTTCCTTCCT 58.833 43.478 0.00 0.00 0.00 3.36
966 1446 4.551702 AGAGCTTCTTCTTCTTCCTTCC 57.448 45.455 0.00 0.00 0.00 3.46
967 1447 5.546526 TCAAGAGCTTCTTCTTCTTCCTTC 58.453 41.667 0.00 0.00 33.78 3.46
968 1448 5.559148 TCAAGAGCTTCTTCTTCTTCCTT 57.441 39.130 0.00 0.00 33.78 3.36
969 1449 5.760484 ATCAAGAGCTTCTTCTTCTTCCT 57.240 39.130 0.00 0.00 33.78 3.36
970 1450 6.654582 AGAAATCAAGAGCTTCTTCTTCTTCC 59.345 38.462 0.00 0.00 33.78 3.46
971 1451 7.671495 AGAAATCAAGAGCTTCTTCTTCTTC 57.329 36.000 0.00 0.00 33.78 2.87
972 1452 8.351461 CAAAGAAATCAAGAGCTTCTTCTTCTT 58.649 33.333 9.20 13.91 38.21 2.52
973 1453 7.521910 GCAAAGAAATCAAGAGCTTCTTCTTCT 60.522 37.037 9.20 0.00 38.21 2.85
974 1454 6.581919 GCAAAGAAATCAAGAGCTTCTTCTTC 59.418 38.462 9.20 0.00 38.21 2.87
975 1455 6.040166 TGCAAAGAAATCAAGAGCTTCTTCTT 59.960 34.615 9.20 0.00 38.21 2.52
976 1456 5.533903 TGCAAAGAAATCAAGAGCTTCTTCT 59.466 36.000 9.20 0.00 38.21 2.85
1135 1637 5.780282 TGAACTGAATAAACAGGAGAGGAGA 59.220 40.000 0.00 0.00 41.59 3.71
1141 1648 7.966753 CACATGAATGAACTGAATAAACAGGAG 59.033 37.037 0.00 0.00 41.59 3.69
1142 1649 7.665145 TCACATGAATGAACTGAATAAACAGGA 59.335 33.333 0.00 0.00 41.59 3.86
1143 1650 7.819644 TCACATGAATGAACTGAATAAACAGG 58.180 34.615 0.00 0.00 41.59 4.00
1144 1651 9.285770 CATCACATGAATGAACTGAATAAACAG 57.714 33.333 0.00 0.00 42.78 3.16
1145 1652 9.012161 TCATCACATGAATGAACTGAATAAACA 57.988 29.630 0.00 0.00 36.11 2.83
1188 2969 4.052229 ACCACCGAGCCGAACGAG 62.052 66.667 0.00 0.00 0.00 4.18
1191 2972 1.838568 GAAACACCACCGAGCCGAAC 61.839 60.000 0.00 0.00 0.00 3.95
1259 3040 3.749064 TCCAGCGCCTCACGTCTC 61.749 66.667 2.29 0.00 46.11 3.36
1484 3283 1.338136 ATCCCCACTGCCCGAACTAG 61.338 60.000 0.00 0.00 0.00 2.57
1537 3336 1.272490 CTACCTTGCGTTGACTCCTGA 59.728 52.381 0.00 0.00 0.00 3.86
1592 3397 7.412346 CCGACTGACACTTGAAAAAGATAGATG 60.412 40.741 0.00 0.00 0.00 2.90
1612 3417 3.002042 GCATCATCAACAAGATCCGACTG 59.998 47.826 0.00 0.00 33.72 3.51
1782 7078 5.091261 ACAGGTGAGATGGAAATACAGAC 57.909 43.478 0.00 0.00 0.00 3.51
1789 7088 2.040278 CCAAGGACAGGTGAGATGGAAA 59.960 50.000 0.00 0.00 0.00 3.13
1824 7123 2.354259 CTAGTTCCTTCCTGCAAGCAG 58.646 52.381 14.91 14.91 43.26 4.24
1825 7124 1.611673 GCTAGTTCCTTCCTGCAAGCA 60.612 52.381 0.00 0.00 0.00 3.91
1826 7125 1.090728 GCTAGTTCCTTCCTGCAAGC 58.909 55.000 0.00 0.00 0.00 4.01
1887 7186 4.325028 AGTATCTTGAGCAGCATGAGAG 57.675 45.455 0.00 0.00 39.69 3.20
1947 7246 2.168728 GTCCCTGAGACTTCCCATGTAC 59.831 54.545 0.00 0.00 42.69 2.90
2146 10057 6.648879 ATGCTGAGGTTACTAAAAGCAAAA 57.351 33.333 0.00 0.00 39.61 2.44
2147 10058 6.490040 AGAATGCTGAGGTTACTAAAAGCAAA 59.510 34.615 0.00 0.00 39.61 3.68
2148 10059 6.003950 AGAATGCTGAGGTTACTAAAAGCAA 58.996 36.000 0.00 0.00 39.61 3.91
2149 10060 5.560724 AGAATGCTGAGGTTACTAAAAGCA 58.439 37.500 0.00 0.00 40.12 3.91
2150 10061 6.238239 GCTAGAATGCTGAGGTTACTAAAAGC 60.238 42.308 0.00 0.00 0.00 3.51
2151 10062 6.818644 TGCTAGAATGCTGAGGTTACTAAAAG 59.181 38.462 0.00 0.00 0.00 2.27
2152 10063 6.707290 TGCTAGAATGCTGAGGTTACTAAAA 58.293 36.000 0.00 0.00 0.00 1.52
2153 10064 6.294361 TGCTAGAATGCTGAGGTTACTAAA 57.706 37.500 0.00 0.00 0.00 1.85
2154 10065 5.932619 TGCTAGAATGCTGAGGTTACTAA 57.067 39.130 0.00 0.00 0.00 2.24
2337 10249 1.006922 GCACAAGCTGAAACCCTGC 60.007 57.895 0.00 0.00 39.67 4.85
2341 10253 2.554032 ACATACTGCACAAGCTGAAACC 59.446 45.455 0.00 0.00 41.71 3.27
2363 10275 5.473066 TGGGTACTGTTCAAGTTACTACC 57.527 43.478 0.00 0.00 40.56 3.18
2712 10628 9.995003 TGAAGCATCAAAATTAATTAACCTGTT 57.005 25.926 0.01 0.00 30.99 3.16
2777 10782 4.565564 GCTTGCTATTTCTGCAGAATTTGG 59.434 41.667 28.89 20.77 41.71 3.28
2911 10929 1.810151 TGAGCCATCGCCTGTTTTTAC 59.190 47.619 0.00 0.00 34.57 2.01
2970 10988 0.953960 AAATTGTCTCGCCCACGTCC 60.954 55.000 0.00 0.00 41.18 4.79
3067 11085 4.315803 GTTCTTTCTTCATTCACCCTCGA 58.684 43.478 0.00 0.00 0.00 4.04
3068 11086 3.437049 GGTTCTTTCTTCATTCACCCTCG 59.563 47.826 0.00 0.00 0.00 4.63
3070 11088 4.453480 TGGTTCTTTCTTCATTCACCCT 57.547 40.909 0.00 0.00 0.00 4.34
3071 11089 5.509670 CCTTTGGTTCTTTCTTCATTCACCC 60.510 44.000 0.00 0.00 0.00 4.61
3072 11090 5.532557 CCTTTGGTTCTTTCTTCATTCACC 58.467 41.667 0.00 0.00 0.00 4.02
3073 11091 4.984785 GCCTTTGGTTCTTTCTTCATTCAC 59.015 41.667 0.00 0.00 0.00 3.18
3074 11092 4.039124 GGCCTTTGGTTCTTTCTTCATTCA 59.961 41.667 0.00 0.00 0.00 2.57
3075 11093 4.560128 GGCCTTTGGTTCTTTCTTCATTC 58.440 43.478 0.00 0.00 0.00 2.67
3076 11094 3.324846 GGGCCTTTGGTTCTTTCTTCATT 59.675 43.478 0.84 0.00 0.00 2.57
3077 11095 2.899900 GGGCCTTTGGTTCTTTCTTCAT 59.100 45.455 0.84 0.00 0.00 2.57
3082 11100 0.679505 GTGGGGCCTTTGGTTCTTTC 59.320 55.000 0.84 0.00 0.00 2.62
3083 11101 0.264657 AGTGGGGCCTTTGGTTCTTT 59.735 50.000 0.84 0.00 0.00 2.52
3109 11162 7.226325 ACGCCTTTACTACATGTACTACTCTAG 59.774 40.741 0.08 0.00 0.00 2.43
3185 11238 0.174389 GCATCTCCTTGTCGAGCTCA 59.826 55.000 15.40 0.00 0.00 4.26
3191 11244 2.202610 TCGCGCATCTCCTTGTCG 60.203 61.111 8.75 0.00 0.00 4.35
3239 13669 0.810031 TCTCGGCGCTCCTTATTTGC 60.810 55.000 7.64 0.00 0.00 3.68
3264 13694 4.214327 CTTCCTCTCCTCCGCCGC 62.214 72.222 0.00 0.00 0.00 6.53
3301 13731 2.183811 CGCTGAGAGCCTGACAGG 59.816 66.667 17.83 17.83 38.18 4.00
3302 13732 1.153862 GTCGCTGAGAGCCTGACAG 60.154 63.158 0.00 0.00 38.18 3.51
3351 13781 1.395635 GCATCATCAACATGCCCTGA 58.604 50.000 0.00 0.00 40.79 3.86
3359 13789 0.105778 TATCCGCGGCATCATCAACA 59.894 50.000 23.51 0.00 0.00 3.33
3360 13790 0.792640 CTATCCGCGGCATCATCAAC 59.207 55.000 23.51 0.00 0.00 3.18
3367 13797 4.008933 GAGGGCTATCCGCGGCAT 62.009 66.667 23.51 17.29 41.52 4.40
3369 13799 4.671569 CTGAGGGCTATCCGCGGC 62.672 72.222 23.51 8.68 41.52 6.53
3414 13844 1.492176 GACTGACCCATGATGGACCAT 59.508 52.381 14.26 6.71 40.96 3.55
3415 13845 0.911769 GACTGACCCATGATGGACCA 59.088 55.000 14.26 9.15 40.96 4.02
3416 13846 0.181350 GGACTGACCCATGATGGACC 59.819 60.000 14.26 4.57 40.96 4.46
3428 13858 2.354203 GGACATGAAGTGAGGGACTGAC 60.354 54.545 0.00 0.00 44.82 3.51
3530 13960 0.039074 CGCCGGGCTTAGATGAGTAG 60.039 60.000 18.34 0.00 0.00 2.57
3548 13978 2.125912 CTGAACGACTGGCTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
3593 14023 1.097547 CACCGGATGAGAATGCCACC 61.098 60.000 9.46 0.00 0.00 4.61
3644 14074 2.217393 GCTGCTTACGTTGATCTGATCG 59.783 50.000 12.65 4.61 0.00 3.69
3719 14149 1.659794 CACCGGCCTGGAAACAAAG 59.340 57.895 18.74 0.00 42.06 2.77
3829 14269 1.470805 GGCCACCAAACAACAAGTCAC 60.471 52.381 0.00 0.00 0.00 3.67
3848 14288 6.287525 ACATGGTAGTTTCCAAAACATTTGG 58.712 36.000 14.31 14.31 41.09 3.28
3861 14301 4.891992 ACAGCTGTAGACATGGTAGTTT 57.108 40.909 20.16 0.00 0.00 2.66
3864 14304 4.820897 TCAAACAGCTGTAGACATGGTAG 58.179 43.478 22.01 1.12 0.00 3.18
3865 14305 4.882842 TCAAACAGCTGTAGACATGGTA 57.117 40.909 22.01 0.00 0.00 3.25
3866 14306 3.769739 TCAAACAGCTGTAGACATGGT 57.230 42.857 22.01 0.00 0.00 3.55
3867 14307 5.877012 ACTTATCAAACAGCTGTAGACATGG 59.123 40.000 22.01 11.21 0.00 3.66
3887 14327 8.452534 CACAAGTTAACACAACCAAACTACTTA 58.547 33.333 8.61 0.00 32.09 2.24
3888 14328 7.040271 ACACAAGTTAACACAACCAAACTACTT 60.040 33.333 8.61 0.00 32.09 2.24
3889 14329 6.431852 ACACAAGTTAACACAACCAAACTACT 59.568 34.615 8.61 0.00 32.09 2.57
3890 14330 6.614160 ACACAAGTTAACACAACCAAACTAC 58.386 36.000 8.61 0.00 32.09 2.73
3978 14743 3.553828 ACATTTACCATACCCCTCACG 57.446 47.619 0.00 0.00 0.00 4.35
4019 17058 7.086376 TCAACAGAGCAATCAAAAGAATTAGC 58.914 34.615 0.00 0.00 0.00 3.09
4025 17064 6.808829 ACAATTCAACAGAGCAATCAAAAGA 58.191 32.000 0.00 0.00 0.00 2.52
4106 17151 8.757982 ACAATCATATCTGTTTTCATAGCCTT 57.242 30.769 0.00 0.00 0.00 4.35
4301 17495 1.821759 CCAACACTTGTGCGGTCCA 60.822 57.895 0.10 0.00 0.00 4.02
4342 17536 4.572389 CAGTTAGCAACTAAGGTATGCAGG 59.428 45.833 0.00 0.00 40.46 4.85
4363 17557 7.254795 CCAAGTTGAAACTTAACTACACCTCAG 60.255 40.741 3.87 0.00 46.89 3.35
4388 17582 3.338249 TGCAATGCACTACTTCTCTTCC 58.662 45.455 2.72 0.00 31.71 3.46
4493 17687 6.936900 ACATATATTTAAGTGGGCTGCAGTAG 59.063 38.462 16.64 0.00 0.00 2.57
4516 17735 6.781014 TCCCTTTTGTAGTCTCTAGAAAGACA 59.219 38.462 13.05 4.20 46.65 3.41
4521 17740 7.236529 TGTAGTCCCTTTTGTAGTCTCTAGAA 58.763 38.462 0.00 0.00 0.00 2.10
4530 17749 7.497595 TGCTATGTATGTAGTCCCTTTTGTAG 58.502 38.462 0.00 0.00 0.00 2.74
4532 17751 6.308015 TGCTATGTATGTAGTCCCTTTTGT 57.692 37.500 0.00 0.00 0.00 2.83
4539 17758 7.710907 TCACTCATTTTGCTATGTATGTAGTCC 59.289 37.037 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.