Multiple sequence alignment - TraesCS1B01G360400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G360400 chr1B 100.000 4816 0 0 1 4816 589049658 589054473 0.000000e+00 8894
1 TraesCS1B01G360400 chr1B 97.460 630 13 1 1 627 60588510 60587881 0.000000e+00 1072
2 TraesCS1B01G360400 chr1B 91.045 201 15 1 4549 4749 589054158 589054355 7.940000e-68 268
3 TraesCS1B01G360400 chr1B 91.045 201 15 1 4501 4698 589054206 589054406 7.940000e-68 268
4 TraesCS1B01G360400 chr1D 90.925 2876 217 18 1853 4698 435738673 435741534 0.000000e+00 3825
5 TraesCS1B01G360400 chr1D 94.486 798 36 3 827 1623 435737632 435738422 0.000000e+00 1223
6 TraesCS1B01G360400 chr1D 99.535 215 1 0 1641 1855 435738406 435738620 4.520000e-105 392
7 TraesCS1B01G360400 chr1D 91.575 273 19 2 4545 4816 435741332 435741601 1.640000e-99 374
8 TraesCS1B01G360400 chr1D 94.853 136 6 1 703 837 349564134 349563999 1.360000e-50 211
9 TraesCS1B01G360400 chr1D 94.872 78 4 0 628 705 435737557 435737634 6.550000e-24 122
10 TraesCS1B01G360400 chrUn 97.953 635 8 3 1 632 463817723 463818355 0.000000e+00 1096
11 TraesCS1B01G360400 chr7A 97.937 630 10 1 1 627 734991545 734992174 0.000000e+00 1088
12 TraesCS1B01G360400 chr3B 97.623 631 14 1 1 631 793111694 793111065 0.000000e+00 1081
13 TraesCS1B01G360400 chr3B 96.269 134 3 2 701 832 50421204 50421337 8.120000e-53 219
14 TraesCS1B01G360400 chr2B 97.615 629 15 0 1 629 174782120 174781492 0.000000e+00 1079
15 TraesCS1B01G360400 chr2B 92.414 145 10 1 697 840 440816113 440816257 6.320000e-49 206
16 TraesCS1B01G360400 chr5B 97.619 630 12 1 1 627 109102987 109102358 0.000000e+00 1077
17 TraesCS1B01G360400 chr5B 97.464 631 13 1 1 628 257006264 257005634 0.000000e+00 1074
18 TraesCS1B01G360400 chr4A 97.619 630 12 1 1 627 648653559 648654188 0.000000e+00 1077
19 TraesCS1B01G360400 chr4A 76.622 1279 229 41 2090 3313 697764397 697765660 4.060000e-180 641
20 TraesCS1B01G360400 chr4A 75.506 445 102 7 3622 4062 697765999 697766440 1.360000e-50 211
21 TraesCS1B01G360400 chr3A 97.615 629 12 2 1 629 9390272 9389647 0.000000e+00 1075
22 TraesCS1B01G360400 chr3A 95.489 133 4 2 698 828 511599995 511600127 1.360000e-50 211
23 TraesCS1B01G360400 chr7B 79.601 1152 201 27 2183 3319 579349255 579348123 0.000000e+00 795
24 TraesCS1B01G360400 chr7B 78.371 712 128 20 927 1623 579350761 579350061 5.720000e-119 438
25 TraesCS1B01G360400 chr7B 94.815 135 5 2 700 832 678632355 678632489 4.880000e-50 209
26 TraesCS1B01G360400 chr7D 95.489 133 4 2 700 830 447766698 447766830 1.360000e-50 211
27 TraesCS1B01G360400 chr7D 92.308 143 9 2 696 836 161488865 161488723 8.170000e-48 202
28 TraesCS1B01G360400 chr5A 94.776 134 6 1 700 832 607836806 607836673 1.760000e-49 207
29 TraesCS1B01G360400 chr4B 95.385 130 5 1 703 831 492222909 492222780 6.320000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G360400 chr1B 589049658 589054473 4815 False 3143.333333 8894 94.0300 1 4816 3 chr1B.!!$F1 4815
1 TraesCS1B01G360400 chr1B 60587881 60588510 629 True 1072.000000 1072 97.4600 1 627 1 chr1B.!!$R1 626
2 TraesCS1B01G360400 chr1D 435737557 435741601 4044 False 1187.200000 3825 94.2786 628 4816 5 chr1D.!!$F1 4188
3 TraesCS1B01G360400 chrUn 463817723 463818355 632 False 1096.000000 1096 97.9530 1 632 1 chrUn.!!$F1 631
4 TraesCS1B01G360400 chr7A 734991545 734992174 629 False 1088.000000 1088 97.9370 1 627 1 chr7A.!!$F1 626
5 TraesCS1B01G360400 chr3B 793111065 793111694 629 True 1081.000000 1081 97.6230 1 631 1 chr3B.!!$R1 630
6 TraesCS1B01G360400 chr2B 174781492 174782120 628 True 1079.000000 1079 97.6150 1 629 1 chr2B.!!$R1 628
7 TraesCS1B01G360400 chr5B 109102358 109102987 629 True 1077.000000 1077 97.6190 1 627 1 chr5B.!!$R1 626
8 TraesCS1B01G360400 chr5B 257005634 257006264 630 True 1074.000000 1074 97.4640 1 628 1 chr5B.!!$R2 627
9 TraesCS1B01G360400 chr4A 648653559 648654188 629 False 1077.000000 1077 97.6190 1 627 1 chr4A.!!$F1 626
10 TraesCS1B01G360400 chr4A 697764397 697766440 2043 False 426.000000 641 76.0640 2090 4062 2 chr4A.!!$F2 1972
11 TraesCS1B01G360400 chr3A 9389647 9390272 625 True 1075.000000 1075 97.6150 1 629 1 chr3A.!!$R1 628
12 TraesCS1B01G360400 chr7B 579348123 579350761 2638 True 616.500000 795 78.9860 927 3319 2 chr7B.!!$R1 2392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 691 0.963962 TCTTCGCCGTTAGTCAACCT 59.036 50.0 0.00 0.0 0.00 3.50 F
1105 1118 0.890996 CCGGCTCAAAGTCAAAGGCT 60.891 55.0 0.00 0.0 33.72 4.58 F
2141 2459 0.109458 AGCAAATGTCACTGCATGCG 60.109 50.0 14.09 10.5 41.17 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2056 2145 0.271927 ATAGCCATCCCTCCCAAGGA 59.728 55.0 0.00 0.0 46.67 3.36 R
2471 2790 1.095807 GTGGTAGGCCCTCGCATTTC 61.096 60.0 0.00 0.0 36.38 2.17 R
3969 4416 0.443869 GCACTTGACGCCATGTACAG 59.556 55.0 0.33 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
319 320 3.352338 GACGCTCCGTGTCCCGATT 62.352 63.158 0.00 0.00 41.37 3.34
323 324 3.309436 CTCCGTGTCCCGATTGGCA 62.309 63.158 0.00 0.00 39.56 4.92
553 558 1.987855 CCGGCACAACCCTCTAGGA 60.988 63.158 0.00 0.00 39.89 2.94
649 654 1.337447 TGGAGTTAGTTGCGTGGCTAC 60.337 52.381 0.00 0.00 34.77 3.58
685 690 1.659098 CATCTTCGCCGTTAGTCAACC 59.341 52.381 0.00 0.00 0.00 3.77
686 691 0.963962 TCTTCGCCGTTAGTCAACCT 59.036 50.000 0.00 0.00 0.00 3.50
702 707 1.734655 ACCTGTGGATGGAGTCAACT 58.265 50.000 0.00 0.00 31.55 3.16
703 708 2.902608 ACCTGTGGATGGAGTCAACTA 58.097 47.619 0.00 0.00 31.55 2.24
704 709 2.567615 ACCTGTGGATGGAGTCAACTAC 59.432 50.000 0.00 0.00 31.55 2.73
705 710 2.834549 CCTGTGGATGGAGTCAACTACT 59.165 50.000 0.00 0.00 42.80 2.57
715 720 2.169330 AGTCAACTACTCCCTTCGTCC 58.831 52.381 0.00 0.00 30.33 4.79
716 721 1.204231 GTCAACTACTCCCTTCGTCCC 59.796 57.143 0.00 0.00 0.00 4.46
717 722 1.203087 TCAACTACTCCCTTCGTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
718 723 1.621814 CAACTACTCCCTTCGTCCCAA 59.378 52.381 0.00 0.00 0.00 4.12
719 724 2.019807 ACTACTCCCTTCGTCCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
720 725 2.332117 ACTACTCCCTTCGTCCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
721 726 2.707257 ACTACTCCCTTCGTCCCAAAAA 59.293 45.455 0.00 0.00 0.00 1.94
722 727 2.971901 ACTCCCTTCGTCCCAAAAAT 57.028 45.000 0.00 0.00 0.00 1.82
723 728 3.238788 ACTCCCTTCGTCCCAAAAATT 57.761 42.857 0.00 0.00 0.00 1.82
724 729 3.572642 ACTCCCTTCGTCCCAAAAATTT 58.427 40.909 0.00 0.00 0.00 1.82
725 730 3.320826 ACTCCCTTCGTCCCAAAAATTTG 59.679 43.478 0.00 0.00 37.90 2.32
726 731 3.301274 TCCCTTCGTCCCAAAAATTTGT 58.699 40.909 5.27 0.00 36.45 2.83
727 732 3.319689 TCCCTTCGTCCCAAAAATTTGTC 59.680 43.478 5.27 0.00 36.45 3.18
728 733 3.320826 CCCTTCGTCCCAAAAATTTGTCT 59.679 43.478 5.27 0.00 36.45 3.41
729 734 4.202212 CCCTTCGTCCCAAAAATTTGTCTT 60.202 41.667 5.27 0.00 36.45 3.01
730 735 5.010213 CCCTTCGTCCCAAAAATTTGTCTTA 59.990 40.000 5.27 0.00 36.45 2.10
731 736 6.149633 CCTTCGTCCCAAAAATTTGTCTTAG 58.850 40.000 5.27 0.00 36.45 2.18
732 737 6.016610 CCTTCGTCCCAAAAATTTGTCTTAGA 60.017 38.462 5.27 0.00 36.45 2.10
733 738 7.309194 CCTTCGTCCCAAAAATTTGTCTTAGAT 60.309 37.037 5.27 0.00 36.45 1.98
734 739 7.519032 TCGTCCCAAAAATTTGTCTTAGATT 57.481 32.000 5.27 0.00 36.45 2.40
735 740 7.590279 TCGTCCCAAAAATTTGTCTTAGATTC 58.410 34.615 5.27 0.00 36.45 2.52
736 741 6.523201 CGTCCCAAAAATTTGTCTTAGATTCG 59.477 38.462 5.27 0.00 36.45 3.34
737 742 7.368059 GTCCCAAAAATTTGTCTTAGATTCGT 58.632 34.615 5.27 0.00 36.45 3.85
738 743 7.537649 GTCCCAAAAATTTGTCTTAGATTCGTC 59.462 37.037 5.27 0.00 36.45 4.20
739 744 7.447238 TCCCAAAAATTTGTCTTAGATTCGTCT 59.553 33.333 5.27 0.00 36.45 4.18
740 745 8.726988 CCCAAAAATTTGTCTTAGATTCGTCTA 58.273 33.333 5.27 0.00 36.45 2.59
741 746 9.760660 CCAAAAATTTGTCTTAGATTCGTCTAG 57.239 33.333 5.27 0.00 36.45 2.43
746 751 9.666626 AATTTGTCTTAGATTCGTCTAGATACG 57.333 33.333 0.00 0.00 44.19 3.06
747 752 6.782298 TGTCTTAGATTCGTCTAGATACGG 57.218 41.667 0.00 0.00 43.05 4.02
748 753 6.519382 TGTCTTAGATTCGTCTAGATACGGA 58.481 40.000 0.00 0.00 43.05 4.69
749 754 7.160049 TGTCTTAGATTCGTCTAGATACGGAT 58.840 38.462 0.00 0.00 43.73 4.18
750 755 7.117956 TGTCTTAGATTCGTCTAGATACGGATG 59.882 40.741 2.64 0.00 41.14 3.51
751 756 7.118101 GTCTTAGATTCGTCTAGATACGGATGT 59.882 40.741 2.64 1.92 41.14 3.06
752 757 8.309656 TCTTAGATTCGTCTAGATACGGATGTA 58.690 37.037 2.64 1.02 41.14 2.29
753 758 9.100554 CTTAGATTCGTCTAGATACGGATGTAT 57.899 37.037 2.64 0.00 41.14 2.29
783 788 7.539712 ACTAAAACATGACTTGATACATCCG 57.460 36.000 0.00 0.00 0.00 4.18
784 789 7.103641 ACTAAAACATGACTTGATACATCCGT 58.896 34.615 0.00 0.00 0.00 4.69
785 790 8.255206 ACTAAAACATGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 0.00 4.02
786 791 9.261180 CTAAAACATGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
787 792 8.506168 AAAACATGACTTGATACATCCGTATT 57.494 30.769 0.00 0.00 38.48 1.89
788 793 8.506168 AAACATGACTTGATACATCCGTATTT 57.494 30.769 0.00 0.00 38.48 1.40
789 794 9.607988 AAACATGACTTGATACATCCGTATTTA 57.392 29.630 0.00 0.00 38.48 1.40
790 795 8.818141 ACATGACTTGATACATCCGTATTTAG 57.182 34.615 0.00 0.00 38.48 1.85
791 796 8.638873 ACATGACTTGATACATCCGTATTTAGA 58.361 33.333 0.00 0.00 38.48 2.10
792 797 9.645059 CATGACTTGATACATCCGTATTTAGAT 57.355 33.333 0.00 0.00 38.48 1.98
818 823 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
819 824 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
820 825 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
821 826 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
822 827 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
823 828 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
824 829 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
825 830 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
846 851 5.179452 AGTACATAAAAGCATGGTCCTGT 57.821 39.130 0.00 2.61 0.00 4.00
857 863 4.649218 AGCATGGTCCTGTTTAACAAAACT 59.351 37.500 0.00 0.00 33.95 2.66
858 864 5.128663 AGCATGGTCCTGTTTAACAAAACTT 59.871 36.000 0.00 0.00 33.95 2.66
870 876 3.271055 ACAAAACTTGGTCGTGTAGGT 57.729 42.857 0.00 0.00 34.12 3.08
871 877 4.405116 ACAAAACTTGGTCGTGTAGGTA 57.595 40.909 0.00 0.00 34.12 3.08
932 938 1.202818 GGTGTCCTTGTTTGCCTCTCT 60.203 52.381 0.00 0.00 0.00 3.10
935 941 2.155279 GTCCTTGTTTGCCTCTCTTCC 58.845 52.381 0.00 0.00 0.00 3.46
947 953 1.067821 CTCTCTTCCCACGCTATCACC 59.932 57.143 0.00 0.00 0.00 4.02
966 972 3.072476 CACCTCACTTTTACCTTCCTCCA 59.928 47.826 0.00 0.00 0.00 3.86
992 998 8.994429 ATATCCAGAAATTTCAGATAGTAGCG 57.006 34.615 23.87 5.49 32.12 4.26
997 1003 6.201806 CAGAAATTTCAGATAGTAGCGGAAGG 59.798 42.308 19.99 0.00 0.00 3.46
1020 1033 2.753029 GAGGCTGCTCTTGTGGGT 59.247 61.111 0.00 0.00 0.00 4.51
1052 1065 1.989508 TGATGAAGCCGCTCCTGGA 60.990 57.895 0.00 0.00 0.00 3.86
1053 1066 1.227497 GATGAAGCCGCTCCTGGAG 60.227 63.158 19.55 19.55 0.00 3.86
1094 1107 2.221906 GAAGAGTACGCCCGGCTCAA 62.222 60.000 8.05 0.00 0.00 3.02
1095 1108 1.823169 AAGAGTACGCCCGGCTCAAA 61.823 55.000 8.05 0.00 0.00 2.69
1096 1109 1.810030 GAGTACGCCCGGCTCAAAG 60.810 63.158 8.05 0.00 0.00 2.77
1097 1110 2.047560 GTACGCCCGGCTCAAAGT 60.048 61.111 8.05 0.00 0.00 2.66
1098 1111 2.098831 GTACGCCCGGCTCAAAGTC 61.099 63.158 8.05 0.00 0.00 3.01
1099 1112 2.575893 TACGCCCGGCTCAAAGTCA 61.576 57.895 8.05 0.00 0.00 3.41
1105 1118 0.890996 CCGGCTCAAAGTCAAAGGCT 60.891 55.000 0.00 0.00 33.72 4.58
1108 1121 1.000171 GGCTCAAAGTCAAAGGCTTGG 60.000 52.381 0.00 0.00 33.01 3.61
1109 1122 1.603931 GCTCAAAGTCAAAGGCTTGGC 60.604 52.381 0.00 0.00 37.43 4.52
1155 1168 3.117175 GATGTGCAGCATGACGGCC 62.117 63.158 0.00 0.00 39.69 6.13
1218 1231 1.481871 TGATACCTTGGAGGGACGAC 58.518 55.000 0.00 0.00 40.58 4.34
1252 1265 2.499693 TCCTACGACATGGAAGATTGCA 59.500 45.455 0.00 0.00 0.00 4.08
1265 1278 5.106038 TGGAAGATTGCATTGATGACTTCAC 60.106 40.000 0.00 0.00 35.48 3.18
1416 1429 1.443802 GCAAGAGGCACAAGAGGTAC 58.556 55.000 0.00 0.00 43.97 3.34
1493 1509 3.574284 TGCACTTTATGTGGATGTTGC 57.426 42.857 0.56 0.00 46.27 4.17
1563 1579 7.254137 GGCTCAAGAATGAAGATTTTTCTACC 58.746 38.462 0.00 0.00 34.49 3.18
1621 1637 4.680407 TCTTGGTAAGACTACCCTAGCAA 58.320 43.478 0.00 0.00 46.39 3.91
1622 1638 5.088730 TCTTGGTAAGACTACCCTAGCAAA 58.911 41.667 0.00 0.00 46.39 3.68
1623 1639 5.544948 TCTTGGTAAGACTACCCTAGCAAAA 59.455 40.000 0.00 0.00 46.39 2.44
1624 1640 5.156608 TGGTAAGACTACCCTAGCAAAAC 57.843 43.478 0.00 0.00 46.39 2.43
1625 1641 4.019950 TGGTAAGACTACCCTAGCAAAACC 60.020 45.833 0.00 0.00 46.39 3.27
1626 1642 4.224594 GGTAAGACTACCCTAGCAAAACCT 59.775 45.833 0.00 0.00 41.77 3.50
1627 1643 4.995624 AAGACTACCCTAGCAAAACCTT 57.004 40.909 0.00 0.00 0.00 3.50
1628 1644 4.995624 AGACTACCCTAGCAAAACCTTT 57.004 40.909 0.00 0.00 0.00 3.11
1629 1645 4.907809 AGACTACCCTAGCAAAACCTTTC 58.092 43.478 0.00 0.00 0.00 2.62
1630 1646 4.349930 AGACTACCCTAGCAAAACCTTTCA 59.650 41.667 0.00 0.00 0.00 2.69
1631 1647 5.056553 ACTACCCTAGCAAAACCTTTCAA 57.943 39.130 0.00 0.00 0.00 2.69
1632 1648 5.451354 ACTACCCTAGCAAAACCTTTCAAA 58.549 37.500 0.00 0.00 0.00 2.69
1633 1649 5.894964 ACTACCCTAGCAAAACCTTTCAAAA 59.105 36.000 0.00 0.00 0.00 2.44
1634 1650 5.685520 ACCCTAGCAAAACCTTTCAAAAA 57.314 34.783 0.00 0.00 0.00 1.94
1855 1871 4.642429 ACGAAAAGTAAGCCTCATGTTCT 58.358 39.130 0.00 0.00 0.00 3.01
1856 1872 5.790593 ACGAAAAGTAAGCCTCATGTTCTA 58.209 37.500 0.00 0.00 0.00 2.10
1884 1955 1.314730 TGTTCTTCCAAAGGAACGCC 58.685 50.000 0.00 0.00 43.10 5.68
1940 2029 7.324935 TGCAATATTCTGAAGCACATGATTTT 58.675 30.769 0.00 0.00 0.00 1.82
2010 2099 7.668525 AGTAACAGTAAGTAATCAAGTTGGC 57.331 36.000 2.34 0.00 0.00 4.52
2028 2117 6.407202 AGTTGGCTGACTAGTAAACTAATGG 58.593 40.000 0.00 0.00 33.09 3.16
2030 2119 3.802685 GGCTGACTAGTAAACTAATGGCG 59.197 47.826 0.00 0.00 0.00 5.69
2056 2145 4.093011 TGGCAACTAGTTAAATGGCCAAT 58.907 39.130 26.05 0.00 46.01 3.16
2141 2459 0.109458 AGCAAATGTCACTGCATGCG 60.109 50.000 14.09 10.50 41.17 4.73
2168 2487 4.940654 GCAATCTTATATGGCTTCCCTCTC 59.059 45.833 0.00 0.00 0.00 3.20
2174 2493 4.803329 ATATGGCTTCCCTCTCAAATGT 57.197 40.909 0.00 0.00 0.00 2.71
2180 2499 7.574021 TGGCTTCCCTCTCAAATGTATATAT 57.426 36.000 0.00 0.00 0.00 0.86
2265 2584 1.704641 GGAAACCATAAGGGATGCCC 58.295 55.000 0.00 0.00 45.90 5.36
2285 2604 5.073554 TGCCCTACTGAATAATGATCATGGT 59.926 40.000 9.46 0.00 0.00 3.55
2328 2647 5.575606 ACACGTAATAGTACAGTTGCATCAC 59.424 40.000 0.78 0.00 0.00 3.06
2393 2712 0.390998 GTCCTGCTGACTCCAGAAGC 60.391 60.000 0.00 0.00 43.48 3.86
2400 2719 2.620585 GCTGACTCCAGAAGCTTGTTTT 59.379 45.455 2.10 0.00 43.02 2.43
2458 2777 2.159476 CGCATCTGGAAAATGTGTCTGG 60.159 50.000 0.00 0.00 31.51 3.86
2471 2790 2.171237 TGTGTCTGGAGGGATATTGCAG 59.829 50.000 0.00 0.00 35.58 4.41
2477 2797 3.225104 TGGAGGGATATTGCAGAAATGC 58.775 45.455 0.00 0.00 0.00 3.56
2604 2924 1.133853 AGGAATCTCATGCTGAAGCCC 60.134 52.381 0.00 0.00 41.18 5.19
2773 3093 0.875908 CCACATCGGAGTGCATACGG 60.876 60.000 7.60 2.02 38.18 4.02
2902 3234 1.179152 TTCATCACATGCAAGGCCAG 58.821 50.000 5.01 0.00 0.00 4.85
2989 3324 2.816672 TCTCTGTCATGAGCCGCTATAG 59.183 50.000 0.00 0.00 34.29 1.31
2990 3325 1.270826 TCTGTCATGAGCCGCTATAGC 59.729 52.381 15.09 15.09 37.78 2.97
3006 3344 1.647545 TAGCGAAATGGCTGCTGTGC 61.648 55.000 0.00 0.00 44.50 4.57
3153 3515 8.416329 GCCATCTGACAAATATTGGAAAGTTAT 58.584 33.333 0.00 0.00 34.12 1.89
3204 3572 9.282569 GATCAGATAAAATAACAGAGCTTCCAT 57.717 33.333 0.00 0.00 0.00 3.41
3230 3598 8.461222 TGTAAAATTGGAGATCTGCAGTATTTG 58.539 33.333 20.87 0.00 31.08 2.32
3236 3604 5.189180 GGAGATCTGCAGTATTTGGAAACT 58.811 41.667 14.67 0.00 0.00 2.66
3245 3613 5.880332 GCAGTATTTGGAAACTCTGGACATA 59.120 40.000 0.00 0.00 0.00 2.29
3247 3615 7.094377 GCAGTATTTGGAAACTCTGGACATAAA 60.094 37.037 0.00 0.00 0.00 1.40
3248 3616 8.454106 CAGTATTTGGAAACTCTGGACATAAAG 58.546 37.037 0.00 0.00 0.00 1.85
3251 3619 3.017442 GGAAACTCTGGACATAAAGGGC 58.983 50.000 0.00 0.00 0.00 5.19
3272 3643 3.739519 GCACCACAATTGCAAAACTACCA 60.740 43.478 1.71 0.00 39.93 3.25
3323 3694 6.085555 ACCCGTCTATATGTTGACTACATG 57.914 41.667 12.08 0.00 46.81 3.21
3351 3722 2.807967 TCAGAGTCAATGGAAAACTGCG 59.192 45.455 0.00 0.00 0.00 5.18
3354 3725 2.742053 GAGTCAATGGAAAACTGCGCTA 59.258 45.455 9.73 0.00 0.00 4.26
3398 3769 4.310769 GACAGTTGCAGAGCTTAGAAGAA 58.689 43.478 0.00 0.00 0.00 2.52
3418 3789 8.034215 AGAAGAACTAGAGAATGTTCATGTCTG 58.966 37.037 0.00 3.01 43.38 3.51
3422 3793 2.019984 GAGAATGTTCATGTCTGCCCC 58.980 52.381 0.00 0.00 0.00 5.80
3427 3798 3.664025 TTCATGTCTGCCCCTCGCG 62.664 63.158 0.00 0.00 42.08 5.87
3438 3809 0.868406 CCCCTCGCGAATAAAGATGC 59.132 55.000 11.33 0.00 0.00 3.91
3439 3810 0.868406 CCCTCGCGAATAAAGATGCC 59.132 55.000 11.33 0.00 0.00 4.40
3444 3815 1.528586 CGCGAATAAAGATGCCTCTGG 59.471 52.381 0.00 0.00 0.00 3.86
3445 3816 2.565841 GCGAATAAAGATGCCTCTGGT 58.434 47.619 0.00 0.00 0.00 4.00
3455 3826 1.032657 TGCCTCTGGTAGAGCTCGAC 61.033 60.000 17.76 17.76 40.98 4.20
3456 3827 1.032657 GCCTCTGGTAGAGCTCGACA 61.033 60.000 25.52 16.34 40.98 4.35
3491 3862 7.081526 TCTAAGGACGTTGAGTGTAAGTATC 57.918 40.000 0.00 0.00 0.00 2.24
3502 3873 4.471548 AGTGTAAGTATCCTGTATCCGCT 58.528 43.478 0.00 0.00 0.00 5.52
3509 3880 5.542779 AGTATCCTGTATCCGCTTCATTTC 58.457 41.667 0.00 0.00 0.00 2.17
3525 3896 4.196971 TCATTTCTGTCATGCTGATGGAG 58.803 43.478 0.00 0.00 0.00 3.86
3538 3909 2.943690 CTGATGGAGCTGAAGATGTTGG 59.056 50.000 0.00 0.00 0.00 3.77
3539 3910 2.295885 GATGGAGCTGAAGATGTTGGG 58.704 52.381 0.00 0.00 0.00 4.12
3553 3924 4.728860 AGATGTTGGGAGATTTGTAGGGAT 59.271 41.667 0.00 0.00 0.00 3.85
3587 3958 4.992951 TCATGCAATCTTCATCATCTACGG 59.007 41.667 0.00 0.00 0.00 4.02
3590 3961 5.614308 TGCAATCTTCATCATCTACGGATT 58.386 37.500 0.00 0.00 0.00 3.01
3600 3971 9.822185 TTCATCATCTACGGATTGATTATATGG 57.178 33.333 0.00 0.00 0.00 2.74
3601 3972 7.928167 TCATCATCTACGGATTGATTATATGGC 59.072 37.037 0.00 0.00 0.00 4.40
3606 3977 7.097192 TCTACGGATTGATTATATGGCTGAAC 58.903 38.462 0.00 0.00 0.00 3.18
3607 3978 5.869579 ACGGATTGATTATATGGCTGAACT 58.130 37.500 0.00 0.00 0.00 3.01
3609 3980 7.450074 ACGGATTGATTATATGGCTGAACTTA 58.550 34.615 0.00 0.00 0.00 2.24
3610 3981 7.387948 ACGGATTGATTATATGGCTGAACTTAC 59.612 37.037 0.00 0.00 0.00 2.34
3642 4088 0.257039 ACTGTCCCTGGAATCATGGC 59.743 55.000 0.00 0.00 0.00 4.40
3648 4094 1.451504 CTGGAATCATGGCGCCCTA 59.548 57.895 26.77 6.41 0.00 3.53
3667 4113 4.166531 CCCTACTACTCCTTCTGTACTCCT 59.833 50.000 0.00 0.00 0.00 3.69
3701 4147 6.315144 CCATCACTAATTACCACATCGACAAA 59.685 38.462 0.00 0.00 0.00 2.83
3724 4170 1.699634 TCCGAATTGGATGATCTCCCC 59.300 52.381 8.25 1.35 43.74 4.81
3914 4361 4.574599 ATCTTTCTTTGTGGAACTGCAC 57.425 40.909 0.00 0.00 38.04 4.57
3924 4371 0.951040 GGAACTGCACTGGAGTTCGG 60.951 60.000 27.50 0.35 46.98 4.30
3949 4396 2.225467 GGATCAATGCCTAAGCTGGAC 58.775 52.381 0.00 0.00 40.80 4.02
3952 4399 1.565759 TCAATGCCTAAGCTGGACCAT 59.434 47.619 0.00 0.00 40.80 3.55
3964 4411 2.825532 GCTGGACCATTTGGAGCTTAAA 59.174 45.455 3.01 0.00 38.94 1.52
3969 4416 4.141937 GGACCATTTGGAGCTTAAATTCCC 60.142 45.833 3.01 8.74 38.94 3.97
3972 4419 4.467438 CCATTTGGAGCTTAAATTCCCTGT 59.533 41.667 7.04 0.00 37.39 4.00
3973 4420 5.656416 CCATTTGGAGCTTAAATTCCCTGTA 59.344 40.000 7.04 0.00 37.39 2.74
3978 4425 4.580580 GGAGCTTAAATTCCCTGTACATGG 59.419 45.833 10.73 10.73 0.00 3.66
4003 4450 0.534877 AGTGCGTGAATGGTGCTTCA 60.535 50.000 0.00 0.00 32.84 3.02
4033 4480 2.667418 CAGCACCTCTCCACCCTG 59.333 66.667 0.00 0.00 0.00 4.45
4036 4483 2.217038 GCACCTCTCCACCCTGACA 61.217 63.158 0.00 0.00 0.00 3.58
4038 4485 0.322975 CACCTCTCCACCCTGACAAG 59.677 60.000 0.00 0.00 0.00 3.16
4050 4497 1.625315 CCTGACAAGACTGGATGTCCA 59.375 52.381 1.17 1.17 46.46 4.02
4055 4502 3.679389 ACAAGACTGGATGTCCACATTC 58.321 45.455 0.00 0.00 46.46 2.67
4067 4514 2.357009 GTCCACATTCATGGCTTAGCTG 59.643 50.000 3.59 0.00 39.85 4.24
4082 4529 6.867662 GCTTAGCTGCCTATCTTATCAAAA 57.132 37.500 0.00 0.00 0.00 2.44
4083 4530 7.264373 GCTTAGCTGCCTATCTTATCAAAAA 57.736 36.000 0.00 0.00 0.00 1.94
4106 4553 5.774498 AGTACCCAAGCTTTCAAAAGAAG 57.226 39.130 6.67 0.00 38.28 2.85
4108 4555 4.655762 ACCCAAGCTTTCAAAAGAAGAC 57.344 40.909 6.67 0.00 38.28 3.01
4118 4565 6.964934 GCTTTCAAAAGAAGACGACTTTGTAA 59.035 34.615 6.67 0.00 38.28 2.41
4119 4566 7.483691 GCTTTCAAAAGAAGACGACTTTGTAAA 59.516 33.333 6.67 0.00 38.28 2.01
4126 4573 8.672823 AAGAAGACGACTTTGTAAATAAGGTT 57.327 30.769 0.83 0.00 36.39 3.50
4128 4575 9.768662 AGAAGACGACTTTGTAAATAAGGTTAA 57.231 29.630 0.83 0.00 36.39 2.01
4154 4601 3.524541 CTTATCAAAATTGCAGTGGGGC 58.475 45.455 0.00 0.00 0.00 5.80
4164 4611 1.391157 GCAGTGGGGCAACTTCACAA 61.391 55.000 0.00 0.00 41.05 3.33
4178 4625 3.070446 ACTTCACAATCGTCCCACTTACA 59.930 43.478 0.00 0.00 0.00 2.41
4190 4637 4.151157 GTCCCACTTACACATTTACACGTC 59.849 45.833 0.00 0.00 0.00 4.34
4194 4641 5.575606 CCACTTACACATTTACACGTCCTAG 59.424 44.000 0.00 0.00 0.00 3.02
4274 4721 9.630098 CACTGCTGATGTTGATTACTTTATTTT 57.370 29.630 0.00 0.00 0.00 1.82
4292 4739 9.804758 CTTTATTTTACCCTCTGAGTACTACTG 57.195 37.037 3.66 0.00 0.00 2.74
4317 4767 6.139169 GCTATTGTTATTTCTTTCATCACGCG 59.861 38.462 3.53 3.53 0.00 6.01
4324 4774 4.584029 TTCTTTCATCACGCGAATTCTC 57.416 40.909 15.93 0.00 0.00 2.87
4325 4775 3.584834 TCTTTCATCACGCGAATTCTCA 58.415 40.909 15.93 0.00 0.00 3.27
4369 4819 8.940952 GTTTATTCAGTAATCTCTTGTTGCTCT 58.059 33.333 0.00 0.00 0.00 4.09
4373 4823 6.291377 TCAGTAATCTCTTGTTGCTCTGTTT 58.709 36.000 0.00 0.00 0.00 2.83
4424 4874 4.887748 TGTGTTTTGGCAGTTCAAGAAAA 58.112 34.783 0.00 0.00 0.00 2.29
4440 4890 9.660180 GTTCAAGAAAAAGTATGGAGATCTAGT 57.340 33.333 0.00 0.00 0.00 2.57
4452 4902 4.202274 TGGAGATCTAGTCAGGAGTAGTCG 60.202 50.000 10.18 0.00 36.12 4.18
4453 4903 4.202284 GGAGATCTAGTCAGGAGTAGTCGT 60.202 50.000 10.18 0.00 36.12 4.34
4458 4908 4.936411 TCTAGTCAGGAGTAGTCGTCAAAG 59.064 45.833 10.18 0.00 36.12 2.77
4471 4921 4.511826 AGTCGTCAAAGTGGAGAAAATGTC 59.488 41.667 0.00 0.00 0.00 3.06
4476 4926 6.751888 CGTCAAAGTGGAGAAAATGTCTTTTT 59.248 34.615 0.00 0.00 40.25 1.94
4477 4927 7.253750 CGTCAAAGTGGAGAAAATGTCTTTTTG 60.254 37.037 1.43 0.00 37.65 2.44
4614 5064 9.053840 TCAGAATGAAGAGATAAATCAAGATGC 57.946 33.333 0.00 0.00 45.97 3.91
4615 5065 9.058174 CAGAATGAAGAGATAAATCAAGATGCT 57.942 33.333 0.00 0.00 39.69 3.79
4616 5066 9.275398 AGAATGAAGAGATAAATCAAGATGCTC 57.725 33.333 0.00 0.00 0.00 4.26
4617 5067 7.982761 ATGAAGAGATAAATCAAGATGCTCC 57.017 36.000 0.00 0.00 0.00 4.70
4618 5068 5.987953 TGAAGAGATAAATCAAGATGCTCCG 59.012 40.000 0.00 0.00 0.00 4.63
4619 5069 5.543507 AGAGATAAATCAAGATGCTCCGT 57.456 39.130 0.00 0.00 0.00 4.69
4620 5070 5.923204 AGAGATAAATCAAGATGCTCCGTT 58.077 37.500 0.00 0.00 0.00 4.44
4621 5071 7.055667 AGAGATAAATCAAGATGCTCCGTTA 57.944 36.000 0.00 0.00 0.00 3.18
4622 5072 7.500992 AGAGATAAATCAAGATGCTCCGTTAA 58.499 34.615 0.00 0.00 0.00 2.01
4623 5073 7.655328 AGAGATAAATCAAGATGCTCCGTTAAG 59.345 37.037 0.00 0.00 0.00 1.85
4624 5074 7.500992 AGATAAATCAAGATGCTCCGTTAAGA 58.499 34.615 0.00 0.00 0.00 2.10
4625 5075 7.987458 AGATAAATCAAGATGCTCCGTTAAGAA 59.013 33.333 0.00 0.00 0.00 2.52
4626 5076 6.428385 AAATCAAGATGCTCCGTTAAGAAG 57.572 37.500 0.00 0.00 0.00 2.85
4627 5077 3.861840 TCAAGATGCTCCGTTAAGAAGG 58.138 45.455 0.00 0.00 0.00 3.46
4628 5078 3.260884 TCAAGATGCTCCGTTAAGAAGGT 59.739 43.478 0.00 0.00 0.00 3.50
4629 5079 3.252974 AGATGCTCCGTTAAGAAGGTG 57.747 47.619 0.00 0.00 0.00 4.00
4630 5080 2.567615 AGATGCTCCGTTAAGAAGGTGT 59.432 45.455 0.00 0.00 0.00 4.16
4631 5081 2.163818 TGCTCCGTTAAGAAGGTGTG 57.836 50.000 0.00 0.00 0.00 3.82
4632 5082 1.414919 TGCTCCGTTAAGAAGGTGTGT 59.585 47.619 0.00 0.00 0.00 3.72
4633 5083 2.067013 GCTCCGTTAAGAAGGTGTGTC 58.933 52.381 0.00 0.00 0.00 3.67
4634 5084 2.547218 GCTCCGTTAAGAAGGTGTGTCA 60.547 50.000 0.00 0.00 0.00 3.58
4635 5085 3.057734 CTCCGTTAAGAAGGTGTGTCAC 58.942 50.000 0.00 0.00 0.00 3.67
4636 5086 1.790623 CCGTTAAGAAGGTGTGTCACG 59.209 52.381 0.00 0.00 34.83 4.35
4637 5087 1.191647 CGTTAAGAAGGTGTGTCACGC 59.808 52.381 8.06 8.06 34.83 5.34
4638 5088 2.480845 GTTAAGAAGGTGTGTCACGCT 58.519 47.619 15.81 0.00 34.83 5.07
4639 5089 2.870411 GTTAAGAAGGTGTGTCACGCTT 59.130 45.455 15.81 5.88 34.83 4.68
4640 5090 1.583054 AAGAAGGTGTGTCACGCTTC 58.417 50.000 15.81 15.48 39.54 3.86
4641 5091 0.464036 AGAAGGTGTGTCACGCTTCA 59.536 50.000 15.81 0.00 40.56 3.02
4642 5092 1.134521 AGAAGGTGTGTCACGCTTCAA 60.135 47.619 15.81 0.00 40.56 2.69
4643 5093 1.668751 GAAGGTGTGTCACGCTTCAAA 59.331 47.619 15.81 0.00 39.31 2.69
4644 5094 1.745232 AGGTGTGTCACGCTTCAAAA 58.255 45.000 15.81 0.00 34.83 2.44
4645 5095 1.670811 AGGTGTGTCACGCTTCAAAAG 59.329 47.619 15.81 0.00 34.83 2.27
4646 5096 1.268539 GGTGTGTCACGCTTCAAAAGG 60.269 52.381 15.81 0.00 34.83 3.11
4647 5097 1.668751 GTGTGTCACGCTTCAAAAGGA 59.331 47.619 9.33 0.00 0.00 3.36
4648 5098 2.096819 GTGTGTCACGCTTCAAAAGGAA 59.903 45.455 9.33 0.00 0.00 3.36
4665 5115 7.335422 TCAAAAGGAAGAGACTAATCAAGATGC 59.665 37.037 0.00 0.00 0.00 3.91
4669 5119 4.582701 AGAGACTAATCAAGATGCTCCG 57.417 45.455 0.00 0.00 0.00 4.63
4732 5182 2.567615 AGATGCTCCGTTAAGAAGGTGT 59.432 45.455 0.00 0.00 0.00 4.16
4733 5183 2.450609 TGCTCCGTTAAGAAGGTGTC 57.549 50.000 0.00 0.00 0.00 3.67
4744 5194 1.412710 AGAAGGTGTCTCACGCTTCAA 59.587 47.619 21.02 0.00 40.56 2.69
4761 5211 4.810491 GCTTCAAAATGTTGTGTCATGGTT 59.190 37.500 0.00 0.00 36.07 3.67
4792 5242 3.770040 CGCATCTGGACCGGACCA 61.770 66.667 24.32 24.32 38.33 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
319 320 3.650950 GCCTCCCTTCAGGTGCCA 61.651 66.667 0.00 0.00 35.72 4.92
629 634 0.970640 TAGCCACGCAACTAACTCCA 59.029 50.000 0.00 0.00 0.00 3.86
649 654 1.002366 GATGGCGTGTCAGCTAACTG 58.998 55.000 0.00 0.00 45.95 3.16
702 707 4.376225 AATTTTTGGGACGAAGGGAGTA 57.624 40.909 0.00 0.00 0.00 2.59
703 708 2.971901 ATTTTTGGGACGAAGGGAGT 57.028 45.000 0.00 0.00 0.00 3.85
704 709 3.320826 ACAAATTTTTGGGACGAAGGGAG 59.679 43.478 7.85 0.00 42.34 4.30
705 710 3.301274 ACAAATTTTTGGGACGAAGGGA 58.699 40.909 7.85 0.00 42.34 4.20
706 711 3.320826 AGACAAATTTTTGGGACGAAGGG 59.679 43.478 7.85 0.00 42.34 3.95
707 712 4.584327 AGACAAATTTTTGGGACGAAGG 57.416 40.909 7.85 0.00 42.34 3.46
708 713 6.966021 TCTAAGACAAATTTTTGGGACGAAG 58.034 36.000 7.85 0.00 42.34 3.79
709 714 6.945938 TCTAAGACAAATTTTTGGGACGAA 57.054 33.333 7.85 0.00 42.34 3.85
710 715 7.519032 AATCTAAGACAAATTTTTGGGACGA 57.481 32.000 7.85 0.00 42.34 4.20
711 716 6.523201 CGAATCTAAGACAAATTTTTGGGACG 59.477 38.462 7.85 0.00 42.34 4.79
712 717 7.368059 ACGAATCTAAGACAAATTTTTGGGAC 58.632 34.615 7.85 0.06 42.34 4.46
713 718 7.447238 AGACGAATCTAAGACAAATTTTTGGGA 59.553 33.333 7.85 0.00 36.54 4.37
714 719 7.593825 AGACGAATCTAAGACAAATTTTTGGG 58.406 34.615 7.85 0.00 36.54 4.12
715 720 9.760660 CTAGACGAATCTAAGACAAATTTTTGG 57.239 33.333 7.85 0.00 38.43 3.28
720 725 9.666626 CGTATCTAGACGAATCTAAGACAAATT 57.333 33.333 0.00 0.00 45.82 1.82
721 726 8.291032 CCGTATCTAGACGAATCTAAGACAAAT 58.709 37.037 5.60 0.00 45.82 2.32
722 727 7.496920 TCCGTATCTAGACGAATCTAAGACAAA 59.503 37.037 5.60 0.00 45.82 2.83
723 728 6.988580 TCCGTATCTAGACGAATCTAAGACAA 59.011 38.462 5.60 0.00 45.82 3.18
724 729 6.519382 TCCGTATCTAGACGAATCTAAGACA 58.481 40.000 5.60 0.00 45.82 3.41
725 730 7.118101 ACATCCGTATCTAGACGAATCTAAGAC 59.882 40.741 5.60 0.00 45.82 3.01
726 731 7.160049 ACATCCGTATCTAGACGAATCTAAGA 58.840 38.462 5.60 0.00 45.82 2.10
727 732 7.367159 ACATCCGTATCTAGACGAATCTAAG 57.633 40.000 5.60 0.00 45.82 2.18
757 762 9.261180 CGGATGTATCAAGTCATGTTTTAGTAT 57.739 33.333 0.00 0.00 0.00 2.12
758 763 8.255206 ACGGATGTATCAAGTCATGTTTTAGTA 58.745 33.333 0.00 0.00 0.00 1.82
759 764 7.103641 ACGGATGTATCAAGTCATGTTTTAGT 58.896 34.615 0.00 0.00 0.00 2.24
760 765 7.539712 ACGGATGTATCAAGTCATGTTTTAG 57.460 36.000 0.00 0.00 0.00 1.85
761 766 9.607988 AATACGGATGTATCAAGTCATGTTTTA 57.392 29.630 0.00 0.00 40.42 1.52
762 767 8.506168 AATACGGATGTATCAAGTCATGTTTT 57.494 30.769 0.00 0.00 40.42 2.43
763 768 8.506168 AAATACGGATGTATCAAGTCATGTTT 57.494 30.769 0.00 0.00 40.42 2.83
764 769 9.261180 CTAAATACGGATGTATCAAGTCATGTT 57.739 33.333 0.00 0.00 40.42 2.71
765 770 8.638873 TCTAAATACGGATGTATCAAGTCATGT 58.361 33.333 0.00 0.00 40.42 3.21
766 771 9.645059 ATCTAAATACGGATGTATCAAGTCATG 57.355 33.333 0.00 0.00 40.42 3.07
792 797 8.726988 CGTCCCAAAATTCTTGTCTTAGATTTA 58.273 33.333 0.00 0.00 0.00 1.40
793 798 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
794 799 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
795 800 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
796 801 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
797 802 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
798 803 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
799 804 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
800 805 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
801 806 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
802 807 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
803 808 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
804 809 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
805 810 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
806 811 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
807 812 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
808 813 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
809 814 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
810 815 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
811 816 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
812 817 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
813 818 2.077687 TTATGTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
814 819 3.740452 GCTTTTATGTACTCCCTCCGTCC 60.740 52.174 0.00 0.00 0.00 4.79
815 820 3.118884 TGCTTTTATGTACTCCCTCCGTC 60.119 47.826 0.00 0.00 0.00 4.79
816 821 2.835764 TGCTTTTATGTACTCCCTCCGT 59.164 45.455 0.00 0.00 0.00 4.69
817 822 3.536956 TGCTTTTATGTACTCCCTCCG 57.463 47.619 0.00 0.00 0.00 4.63
818 823 4.137543 CCATGCTTTTATGTACTCCCTCC 58.862 47.826 0.00 0.00 0.00 4.30
819 824 4.781934 ACCATGCTTTTATGTACTCCCTC 58.218 43.478 0.00 0.00 0.00 4.30
820 825 4.385310 GGACCATGCTTTTATGTACTCCCT 60.385 45.833 0.00 0.00 0.00 4.20
821 826 3.883489 GGACCATGCTTTTATGTACTCCC 59.117 47.826 0.00 0.00 0.00 4.30
822 827 4.576463 CAGGACCATGCTTTTATGTACTCC 59.424 45.833 0.00 0.00 0.00 3.85
823 828 5.186198 ACAGGACCATGCTTTTATGTACTC 58.814 41.667 0.00 0.00 0.00 2.59
824 829 5.179452 ACAGGACCATGCTTTTATGTACT 57.821 39.130 0.00 0.00 0.00 2.73
825 830 5.897377 AACAGGACCATGCTTTTATGTAC 57.103 39.130 0.00 0.00 0.00 2.90
846 851 5.647225 ACCTACACGACCAAGTTTTGTTAAA 59.353 36.000 0.00 0.00 0.00 1.52
857 863 4.618927 GCACTGTAATACCTACACGACCAA 60.619 45.833 0.00 0.00 35.50 3.67
858 864 3.119388 GCACTGTAATACCTACACGACCA 60.119 47.826 0.00 0.00 35.50 4.02
870 876 6.878923 AGTTGAGCTACATTTGCACTGTAATA 59.121 34.615 9.06 0.00 0.00 0.98
871 877 5.707298 AGTTGAGCTACATTTGCACTGTAAT 59.293 36.000 9.06 2.57 0.00 1.89
932 938 0.535335 GTGAGGTGATAGCGTGGGAA 59.465 55.000 0.00 0.00 0.00 3.97
935 941 2.386661 AAAGTGAGGTGATAGCGTGG 57.613 50.000 0.00 0.00 0.00 4.94
947 953 6.768381 GGATATTGGAGGAAGGTAAAAGTGAG 59.232 42.308 0.00 0.00 0.00 3.51
966 972 9.429359 CGCTACTATCTGAAATTTCTGGATATT 57.571 33.333 20.84 19.35 0.00 1.28
992 998 2.203126 CAGCCTCCATCGCCTTCC 60.203 66.667 0.00 0.00 0.00 3.46
997 1003 2.178890 CAAGAGCAGCCTCCATCGC 61.179 63.158 0.00 0.00 38.96 4.58
999 1012 0.747283 CCACAAGAGCAGCCTCCATC 60.747 60.000 0.00 0.00 38.96 3.51
1020 1033 3.575247 ATCACCCCCACGCCAACA 61.575 61.111 0.00 0.00 0.00 3.33
1069 1082 1.751927 GGGCGTACTCTTCCTCCGA 60.752 63.158 0.00 0.00 0.00 4.55
1094 1107 0.179018 ACGAGCCAAGCCTTTGACTT 60.179 50.000 0.00 0.00 36.36 3.01
1095 1108 0.603975 GACGAGCCAAGCCTTTGACT 60.604 55.000 0.00 0.00 36.36 3.41
1096 1109 0.884704 TGACGAGCCAAGCCTTTGAC 60.885 55.000 0.00 0.00 36.36 3.18
1097 1110 0.603707 CTGACGAGCCAAGCCTTTGA 60.604 55.000 0.00 0.00 36.36 2.69
1098 1111 1.580845 CCTGACGAGCCAAGCCTTTG 61.581 60.000 0.00 0.00 0.00 2.77
1099 1112 1.302832 CCTGACGAGCCAAGCCTTT 60.303 57.895 0.00 0.00 0.00 3.11
1105 1118 1.289066 CTTCGACCTGACGAGCCAA 59.711 57.895 0.00 0.00 43.04 4.52
1108 1121 2.507324 GGCTTCGACCTGACGAGC 60.507 66.667 0.00 0.00 43.04 5.03
1109 1122 1.444553 GTGGCTTCGACCTGACGAG 60.445 63.158 0.00 0.00 43.04 4.18
1218 1231 3.506096 TAGGACAGCTCGCGGACG 61.506 66.667 6.13 0.00 42.01 4.79
1252 1265 1.066858 ACGAGCCGTGAAGTCATCAAT 60.067 47.619 0.00 0.00 40.50 2.57
1265 1278 2.805353 CGTGGTCAAGACGAGCCG 60.805 66.667 0.00 0.00 41.69 5.52
1363 1376 1.234615 CGGGCCTTGAGCTTTTCGAA 61.235 55.000 0.84 0.00 43.05 3.71
1416 1429 5.736951 TGGGTATTGGGAAGTCATTTTTG 57.263 39.130 0.00 0.00 0.00 2.44
1493 1509 1.942657 CGTCCATGCCCACAATCTTAG 59.057 52.381 0.00 0.00 0.00 2.18
1563 1579 2.317609 CGACACCACTTGAAGCGGG 61.318 63.158 4.07 3.14 0.00 6.13
1637 1653 5.076873 TGCATTTGCTAGGGTAGTCTTTTT 58.923 37.500 3.94 0.00 42.66 1.94
1638 1654 4.662278 TGCATTTGCTAGGGTAGTCTTTT 58.338 39.130 3.94 0.00 42.66 2.27
1639 1655 4.263506 ACTGCATTTGCTAGGGTAGTCTTT 60.264 41.667 3.94 0.00 42.66 2.52
1640 1656 3.264450 ACTGCATTTGCTAGGGTAGTCTT 59.736 43.478 3.94 0.00 42.66 3.01
1641 1657 2.840651 ACTGCATTTGCTAGGGTAGTCT 59.159 45.455 3.94 0.00 42.66 3.24
1642 1658 3.118592 AGACTGCATTTGCTAGGGTAGTC 60.119 47.826 3.94 7.14 42.66 2.59
1643 1659 2.840651 AGACTGCATTTGCTAGGGTAGT 59.159 45.455 3.94 0.00 42.66 2.73
1644 1660 3.550437 AGACTGCATTTGCTAGGGTAG 57.450 47.619 3.94 0.00 42.66 3.18
1645 1661 3.134081 GGTAGACTGCATTTGCTAGGGTA 59.866 47.826 3.94 0.00 42.66 3.69
1646 1662 2.092914 GGTAGACTGCATTTGCTAGGGT 60.093 50.000 3.94 0.00 42.66 4.34
1647 1663 2.092968 TGGTAGACTGCATTTGCTAGGG 60.093 50.000 3.94 0.00 42.66 3.53
1648 1664 3.266510 TGGTAGACTGCATTTGCTAGG 57.733 47.619 3.94 0.00 42.66 3.02
1649 1665 3.064545 GCTTGGTAGACTGCATTTGCTAG 59.935 47.826 3.94 2.79 42.66 3.42
1650 1666 3.009723 GCTTGGTAGACTGCATTTGCTA 58.990 45.455 3.94 0.00 42.66 3.49
1651 1667 1.815003 GCTTGGTAGACTGCATTTGCT 59.185 47.619 3.94 0.00 42.66 3.91
1652 1668 1.135286 GGCTTGGTAGACTGCATTTGC 60.135 52.381 0.00 0.00 42.50 3.68
1653 1669 2.161855 TGGCTTGGTAGACTGCATTTG 58.838 47.619 0.00 0.00 0.00 2.32
1654 1670 2.584835 TGGCTTGGTAGACTGCATTT 57.415 45.000 0.00 0.00 0.00 2.32
1856 1872 8.028938 CGTTCCTTTGGAAGAACATTTCAATAT 58.971 33.333 0.00 0.00 42.88 1.28
1884 1955 5.921962 AATTAAAGCCCTTTCTAGCCAAG 57.078 39.130 0.00 0.00 34.23 3.61
1991 2080 5.934625 AGTCAGCCAACTTGATTACTTACTG 59.065 40.000 0.00 0.00 0.00 2.74
1992 2081 6.115448 AGTCAGCCAACTTGATTACTTACT 57.885 37.500 0.00 0.00 0.00 2.24
1993 2082 7.097834 ACTAGTCAGCCAACTTGATTACTTAC 58.902 38.462 0.00 0.00 0.00 2.34
1994 2083 7.241042 ACTAGTCAGCCAACTTGATTACTTA 57.759 36.000 0.00 0.00 0.00 2.24
2003 2092 6.879458 CCATTAGTTTACTAGTCAGCCAACTT 59.121 38.462 0.00 0.00 32.33 2.66
2009 2098 4.679662 TCGCCATTAGTTTACTAGTCAGC 58.320 43.478 0.00 0.00 0.00 4.26
2010 2099 6.199154 CACATCGCCATTAGTTTACTAGTCAG 59.801 42.308 0.00 0.00 0.00 3.51
2028 2117 4.342772 CATTTAACTAGTTGCCACATCGC 58.657 43.478 18.56 0.00 0.00 4.58
2030 2119 4.440112 GGCCATTTAACTAGTTGCCACATC 60.440 45.833 22.55 6.89 37.36 3.06
2056 2145 0.271927 ATAGCCATCCCTCCCAAGGA 59.728 55.000 0.00 0.00 46.67 3.36
2141 2459 6.241645 AGGGAAGCCATATAAGATTGCTTAC 58.758 40.000 0.00 0.00 41.97 2.34
2180 2499 5.757320 CCTGCCACATGATTTTTAACAAACA 59.243 36.000 0.00 0.00 0.00 2.83
2265 2584 8.309656 TCTGCTACCATGATCATTATTCAGTAG 58.690 37.037 5.16 10.80 30.69 2.57
2285 2604 6.627243 ACGTGTTGTAGTGATAATTCTGCTA 58.373 36.000 0.00 0.00 0.00 3.49
2328 2647 1.953686 ACCGGTTCCAGAACAACAATG 59.046 47.619 0.00 0.00 42.85 2.82
2471 2790 1.095807 GTGGTAGGCCCTCGCATTTC 61.096 60.000 0.00 0.00 36.38 2.17
2477 2797 4.162690 GCCAGTGGTAGGCCCTCG 62.163 72.222 11.74 0.00 46.50 4.63
2773 3093 7.803131 ACCATAAAAATAACTCTCCCCTACTC 58.197 38.462 0.00 0.00 0.00 2.59
2828 3148 2.872245 CACCTGGCCATACTTTATGTCG 59.128 50.000 5.51 0.00 34.36 4.35
2831 3151 3.136443 TCTCCACCTGGCCATACTTTATG 59.864 47.826 5.51 0.00 35.94 1.90
2832 3152 3.136626 GTCTCCACCTGGCCATACTTTAT 59.863 47.826 5.51 0.00 34.44 1.40
2902 3234 9.499585 CATATGTTGTCATGAAATTCTCTTCAC 57.500 33.333 0.00 0.00 38.12 3.18
2989 3324 2.505557 GCACAGCAGCCATTTCGC 60.506 61.111 0.00 0.00 0.00 4.70
3006 3344 2.100128 ACATGAGAGAGATCCCCTGG 57.900 55.000 0.00 0.00 0.00 4.45
3204 3572 8.461222 CAAATACTGCAGATCTCCAATTTTACA 58.539 33.333 23.35 0.00 0.00 2.41
3230 3598 3.017442 GCCCTTTATGTCCAGAGTTTCC 58.983 50.000 0.00 0.00 0.00 3.13
3236 3604 1.004277 GTGGTGCCCTTTATGTCCAGA 59.996 52.381 0.00 0.00 0.00 3.86
3245 3613 0.835941 TTGCAATTGTGGTGCCCTTT 59.164 45.000 7.40 0.00 41.49 3.11
3247 3615 0.835941 TTTTGCAATTGTGGTGCCCT 59.164 45.000 7.40 0.00 41.49 5.19
3248 3616 0.943673 GTTTTGCAATTGTGGTGCCC 59.056 50.000 7.40 0.00 41.49 5.36
3251 3619 4.052159 TGGTAGTTTTGCAATTGTGGTG 57.948 40.909 7.40 0.00 0.00 4.17
3256 3624 8.761575 AATAGTTGATGGTAGTTTTGCAATTG 57.238 30.769 0.00 0.00 0.00 2.32
3262 3630 7.461107 CCGTGTAATAGTTGATGGTAGTTTTG 58.539 38.462 0.00 0.00 0.00 2.44
3272 3643 6.170506 TCTTTGAAGCCGTGTAATAGTTGAT 58.829 36.000 0.00 0.00 0.00 2.57
3327 3698 4.380233 GCAGTTTTCCATTGACTCTGATGG 60.380 45.833 0.00 5.93 43.36 3.51
3329 3700 3.438087 CGCAGTTTTCCATTGACTCTGAT 59.562 43.478 0.00 0.00 0.00 2.90
3332 3703 1.537202 GCGCAGTTTTCCATTGACTCT 59.463 47.619 0.30 0.00 0.00 3.24
3346 3717 4.960938 TCCATCAGATAAATTAGCGCAGT 58.039 39.130 11.47 0.00 0.00 4.40
3347 3718 5.929697 TTCCATCAGATAAATTAGCGCAG 57.070 39.130 11.47 0.00 0.00 5.18
3398 3769 4.383552 GGGCAGACATGAACATTCTCTAGT 60.384 45.833 0.00 0.00 0.00 2.57
3418 3789 0.868406 CATCTTTATTCGCGAGGGGC 59.132 55.000 9.59 0.00 38.69 5.80
3422 3793 2.474359 CAGAGGCATCTTTATTCGCGAG 59.526 50.000 9.59 0.00 31.64 5.03
3427 3798 4.994217 GCTCTACCAGAGGCATCTTTATTC 59.006 45.833 0.00 0.00 42.54 1.75
3438 3809 1.403679 CTTGTCGAGCTCTACCAGAGG 59.596 57.143 15.18 0.00 42.54 3.69
3439 3810 2.088423 ACTTGTCGAGCTCTACCAGAG 58.912 52.381 21.81 15.57 45.04 3.35
3444 3815 4.170292 TGGTTAACTTGTCGAGCTCTAC 57.830 45.455 12.85 12.03 0.00 2.59
3445 3816 4.859304 TTGGTTAACTTGTCGAGCTCTA 57.141 40.909 12.85 0.00 0.00 2.43
3455 3826 6.425721 TCAACGTCCTTAGATTGGTTAACTTG 59.574 38.462 5.42 0.00 0.00 3.16
3456 3827 6.527423 TCAACGTCCTTAGATTGGTTAACTT 58.473 36.000 5.42 0.00 0.00 2.66
3491 3862 3.535561 ACAGAAATGAAGCGGATACAGG 58.464 45.455 0.00 0.00 0.00 4.00
3525 3896 3.760684 ACAAATCTCCCAACATCTTCAGC 59.239 43.478 0.00 0.00 0.00 4.26
3530 3901 4.111577 TCCCTACAAATCTCCCAACATCT 58.888 43.478 0.00 0.00 0.00 2.90
3568 3939 5.698089 TCAATCCGTAGATGATGAAGATTGC 59.302 40.000 0.00 0.00 39.15 3.56
3600 3971 2.353704 GGCCCCAAATTGTAAGTTCAGC 60.354 50.000 0.00 0.00 0.00 4.26
3601 3972 3.165071 AGGCCCCAAATTGTAAGTTCAG 58.835 45.455 0.00 0.00 0.00 3.02
3606 3977 3.694566 GACAGTAGGCCCCAAATTGTAAG 59.305 47.826 0.00 0.00 0.00 2.34
3607 3978 3.562609 GGACAGTAGGCCCCAAATTGTAA 60.563 47.826 0.00 0.00 0.00 2.41
3609 3980 1.272480 GGACAGTAGGCCCCAAATTGT 60.272 52.381 0.00 0.00 0.00 2.71
3610 3981 1.474330 GGACAGTAGGCCCCAAATTG 58.526 55.000 0.00 0.00 0.00 2.32
3615 3986 2.285368 CAGGGACAGTAGGCCCCA 60.285 66.667 1.94 0.00 45.89 4.96
3616 3987 3.090532 CCAGGGACAGTAGGCCCC 61.091 72.222 1.94 0.00 45.89 5.80
3642 4088 1.765230 ACAGAAGGAGTAGTAGGGCG 58.235 55.000 0.00 0.00 0.00 6.13
3648 4094 3.592427 TCCAGGAGTACAGAAGGAGTAGT 59.408 47.826 0.00 0.00 0.00 2.73
3724 4170 4.113354 GTCTAACGCCCTAAGATTCACAG 58.887 47.826 0.00 0.00 0.00 3.66
3893 4340 4.037208 CAGTGCAGTTCCACAAAGAAAGAT 59.963 41.667 0.00 0.00 38.18 2.40
3914 4361 1.036707 GATCCCTCTCCGAACTCCAG 58.963 60.000 0.00 0.00 0.00 3.86
3924 4371 2.371510 AGCTTAGGCATTGATCCCTCTC 59.628 50.000 0.00 0.00 41.70 3.20
3946 4393 4.141937 GGGAATTTAAGCTCCAAATGGTCC 60.142 45.833 12.18 12.18 36.34 4.46
3949 4396 4.467438 ACAGGGAATTTAAGCTCCAAATGG 59.533 41.667 6.94 0.00 32.95 3.16
3952 4399 5.636123 TGTACAGGGAATTTAAGCTCCAAA 58.364 37.500 0.00 0.00 32.95 3.28
3964 4411 0.908910 TGACGCCATGTACAGGGAAT 59.091 50.000 29.94 16.23 33.27 3.01
3969 4416 0.443869 GCACTTGACGCCATGTACAG 59.556 55.000 0.33 0.00 0.00 2.74
3972 4419 1.005512 ACGCACTTGACGCCATGTA 60.006 52.632 0.00 0.00 0.00 2.29
3973 4420 2.280797 ACGCACTTGACGCCATGT 60.281 55.556 0.00 0.00 0.00 3.21
3978 4425 1.154413 CCATTCACGCACTTGACGC 60.154 57.895 0.00 0.00 0.00 5.19
4003 4450 1.188863 GGTGCTGGATGCCAAAATCT 58.811 50.000 0.00 0.00 42.00 2.40
4082 4529 6.379988 TCTTCTTTTGAAAGCTTGGGTACTTT 59.620 34.615 0.00 0.00 38.07 2.66
4083 4530 5.891551 TCTTCTTTTGAAAGCTTGGGTACTT 59.108 36.000 0.00 0.00 38.07 2.24
4087 4534 3.066760 CGTCTTCTTTTGAAAGCTTGGGT 59.933 43.478 0.00 0.00 38.07 4.51
4088 4535 3.315191 TCGTCTTCTTTTGAAAGCTTGGG 59.685 43.478 0.00 0.00 38.07 4.12
4089 4536 4.035675 AGTCGTCTTCTTTTGAAAGCTTGG 59.964 41.667 0.00 0.00 38.07 3.61
4090 4537 5.162000 AGTCGTCTTCTTTTGAAAGCTTG 57.838 39.130 0.00 0.00 38.07 4.01
4091 4538 5.819825 AAGTCGTCTTCTTTTGAAAGCTT 57.180 34.783 0.00 0.00 38.07 3.74
4092 4539 5.123979 ACAAAGTCGTCTTCTTTTGAAAGCT 59.876 36.000 0.00 0.00 38.07 3.74
4093 4540 5.332707 ACAAAGTCGTCTTCTTTTGAAAGC 58.667 37.500 0.00 0.00 38.07 3.51
4094 4541 8.889849 TTTACAAAGTCGTCTTCTTTTGAAAG 57.110 30.769 0.00 0.00 38.07 2.62
4098 4545 9.382244 CCTTATTTACAAAGTCGTCTTCTTTTG 57.618 33.333 0.00 0.00 33.58 2.44
4106 4553 9.911980 GCTATTAACCTTATTTACAAAGTCGTC 57.088 33.333 0.00 0.00 0.00 4.20
4108 4555 9.106070 AGGCTATTAACCTTATTTACAAAGTCG 57.894 33.333 0.00 0.00 31.87 4.18
4126 4573 7.201902 CCCACTGCAATTTTGATAAGGCTATTA 60.202 37.037 0.00 0.00 0.00 0.98
4128 4575 5.069516 CCCACTGCAATTTTGATAAGGCTAT 59.930 40.000 0.00 0.00 0.00 2.97
4154 4601 2.494059 AGTGGGACGATTGTGAAGTTG 58.506 47.619 0.00 0.00 0.00 3.16
4164 4611 4.933400 GTGTAAATGTGTAAGTGGGACGAT 59.067 41.667 0.00 0.00 0.00 3.73
4190 4637 5.202004 ACAACCTGTAGTGTATCCTCTAGG 58.798 45.833 0.00 0.00 0.00 3.02
4194 4641 4.381718 GGTGACAACCTGTAGTGTATCCTC 60.382 50.000 0.00 0.00 43.84 3.71
4248 4695 9.630098 AAAATAAAGTAATCAACATCAGCAGTG 57.370 29.630 0.00 0.00 0.00 3.66
4274 4721 5.908562 ATAGCAGTAGTACTCAGAGGGTA 57.091 43.478 0.00 0.00 0.00 3.69
4292 4739 6.139169 CGCGTGATGAAAGAAATAACAATAGC 59.861 38.462 0.00 0.00 0.00 2.97
4305 4755 3.997319 TGAGAATTCGCGTGATGAAAG 57.003 42.857 5.77 0.00 0.00 2.62
4314 4764 7.186804 AGTAAATAATTGGTTGAGAATTCGCG 58.813 34.615 0.00 0.00 0.00 5.87
4346 4796 7.615403 ACAGAGCAACAAGAGATTACTGAATA 58.385 34.615 0.00 0.00 0.00 1.75
4387 4837 8.999431 TGCCAAAACACAGTAAATTAAAACAAA 58.001 25.926 0.00 0.00 0.00 2.83
4389 4839 7.819900 ACTGCCAAAACACAGTAAATTAAAACA 59.180 29.630 0.00 0.00 45.09 2.83
4395 4845 5.971763 TGAACTGCCAAAACACAGTAAATT 58.028 33.333 0.00 0.00 46.17 1.82
4408 4858 5.596361 TCCATACTTTTTCTTGAACTGCCAA 59.404 36.000 0.00 0.00 0.00 4.52
4409 4859 5.136828 TCCATACTTTTTCTTGAACTGCCA 58.863 37.500 0.00 0.00 0.00 4.92
4424 4874 6.274322 ACTCCTGACTAGATCTCCATACTT 57.726 41.667 0.00 0.00 0.00 2.24
4440 4890 2.557056 CCACTTTGACGACTACTCCTGA 59.443 50.000 0.00 0.00 0.00 3.86
4452 4902 7.545615 ACAAAAAGACATTTTCTCCACTTTGAC 59.454 33.333 0.00 0.00 39.20 3.18
4453 4903 7.610865 ACAAAAAGACATTTTCTCCACTTTGA 58.389 30.769 0.00 0.00 39.20 2.69
4458 4908 6.149129 AGGACAAAAAGACATTTTCTCCAC 57.851 37.500 11.26 0.00 44.26 4.02
4499 4949 7.991460 TGACATAGCATCTTGATCAATCTCTTT 59.009 33.333 8.96 0.00 0.00 2.52
4603 5053 5.355350 CCTTCTTAACGGAGCATCTTGATTT 59.645 40.000 0.00 0.00 33.73 2.17
4604 5054 4.878397 CCTTCTTAACGGAGCATCTTGATT 59.122 41.667 0.00 0.00 33.73 2.57
4605 5055 4.080863 ACCTTCTTAACGGAGCATCTTGAT 60.081 41.667 0.00 0.00 33.73 2.57
4606 5056 3.260884 ACCTTCTTAACGGAGCATCTTGA 59.739 43.478 0.00 0.00 33.73 3.02
4607 5057 3.372206 CACCTTCTTAACGGAGCATCTTG 59.628 47.826 0.00 0.00 33.73 3.02
4608 5058 3.008049 ACACCTTCTTAACGGAGCATCTT 59.992 43.478 0.00 0.00 33.73 2.40
4609 5059 2.567615 ACACCTTCTTAACGGAGCATCT 59.432 45.455 0.00 0.00 33.73 2.90
4610 5060 2.673368 CACACCTTCTTAACGGAGCATC 59.327 50.000 0.00 0.00 0.00 3.91
4611 5061 2.038557 ACACACCTTCTTAACGGAGCAT 59.961 45.455 0.00 0.00 0.00 3.79
4612 5062 1.414919 ACACACCTTCTTAACGGAGCA 59.585 47.619 0.00 0.00 0.00 4.26
4613 5063 2.067013 GACACACCTTCTTAACGGAGC 58.933 52.381 0.00 0.00 0.00 4.70
4614 5064 3.057734 GTGACACACCTTCTTAACGGAG 58.942 50.000 0.00 0.00 0.00 4.63
4615 5065 2.544277 CGTGACACACCTTCTTAACGGA 60.544 50.000 6.37 0.00 0.00 4.69
4616 5066 1.790623 CGTGACACACCTTCTTAACGG 59.209 52.381 6.37 0.00 0.00 4.44
4617 5067 1.191647 GCGTGACACACCTTCTTAACG 59.808 52.381 6.37 0.00 0.00 3.18
4618 5068 2.480845 AGCGTGACACACCTTCTTAAC 58.519 47.619 6.37 0.00 0.00 2.01
4619 5069 2.902705 AGCGTGACACACCTTCTTAA 57.097 45.000 6.37 0.00 0.00 1.85
4620 5070 2.101750 TGAAGCGTGACACACCTTCTTA 59.898 45.455 24.67 11.77 39.73 2.10
4621 5071 1.134521 TGAAGCGTGACACACCTTCTT 60.135 47.619 24.67 12.58 39.73 2.52
4622 5072 0.464036 TGAAGCGTGACACACCTTCT 59.536 50.000 24.67 6.54 39.73 2.85
4623 5073 1.295792 TTGAAGCGTGACACACCTTC 58.704 50.000 20.76 20.76 39.61 3.46
4624 5074 1.745232 TTTGAAGCGTGACACACCTT 58.255 45.000 6.37 7.26 31.32 3.50
4625 5075 1.670811 CTTTTGAAGCGTGACACACCT 59.329 47.619 6.37 0.00 0.00 4.00
4626 5076 1.268539 CCTTTTGAAGCGTGACACACC 60.269 52.381 6.37 0.00 0.00 4.16
4627 5077 1.668751 TCCTTTTGAAGCGTGACACAC 59.331 47.619 6.37 0.00 0.00 3.82
4628 5078 2.031258 TCCTTTTGAAGCGTGACACA 57.969 45.000 6.37 0.00 0.00 3.72
4629 5079 2.987046 CTTCCTTTTGAAGCGTGACAC 58.013 47.619 0.00 0.00 43.79 3.67
4638 5088 9.224267 CATCTTGATTAGTCTCTTCCTTTTGAA 57.776 33.333 0.00 0.00 0.00 2.69
4639 5089 7.335422 GCATCTTGATTAGTCTCTTCCTTTTGA 59.665 37.037 0.00 0.00 0.00 2.69
4640 5090 7.336427 AGCATCTTGATTAGTCTCTTCCTTTTG 59.664 37.037 0.00 0.00 0.00 2.44
4641 5091 7.401246 AGCATCTTGATTAGTCTCTTCCTTTT 58.599 34.615 0.00 0.00 0.00 2.27
4642 5092 6.956497 AGCATCTTGATTAGTCTCTTCCTTT 58.044 36.000 0.00 0.00 0.00 3.11
4643 5093 6.407979 GGAGCATCTTGATTAGTCTCTTCCTT 60.408 42.308 0.00 0.00 33.73 3.36
4644 5094 5.070313 GGAGCATCTTGATTAGTCTCTTCCT 59.930 44.000 0.00 0.00 33.73 3.36
4645 5095 5.296748 GGAGCATCTTGATTAGTCTCTTCC 58.703 45.833 0.00 0.00 33.73 3.46
4646 5096 4.981674 CGGAGCATCTTGATTAGTCTCTTC 59.018 45.833 0.00 0.00 33.73 2.87
4647 5097 4.404073 ACGGAGCATCTTGATTAGTCTCTT 59.596 41.667 0.00 0.00 33.73 2.85
4648 5098 3.957497 ACGGAGCATCTTGATTAGTCTCT 59.043 43.478 0.00 0.00 33.73 3.10
4649 5099 4.314740 ACGGAGCATCTTGATTAGTCTC 57.685 45.455 0.00 0.00 33.73 3.36
4650 5100 4.744795 AACGGAGCATCTTGATTAGTCT 57.255 40.909 0.00 0.00 33.73 3.24
4651 5101 6.273825 TCTTAACGGAGCATCTTGATTAGTC 58.726 40.000 0.00 0.00 33.73 2.59
4652 5102 6.222038 TCTTAACGGAGCATCTTGATTAGT 57.778 37.500 0.00 0.00 33.73 2.24
4653 5103 6.201806 CCTTCTTAACGGAGCATCTTGATTAG 59.798 42.308 0.00 0.00 33.73 1.73
4665 5115 3.057734 GTGACACACCTTCTTAACGGAG 58.942 50.000 0.00 0.00 0.00 4.63
4669 5119 2.480845 AGCGTGACACACCTTCTTAAC 58.519 47.619 6.37 0.00 0.00 2.01
4716 5166 3.576648 GTGAGACACCTTCTTAACGGAG 58.423 50.000 0.00 0.00 33.22 4.63
4732 5182 3.376859 ACACAACATTTTGAAGCGTGAGA 59.623 39.130 0.00 0.00 36.48 3.27
4733 5183 3.694734 ACACAACATTTTGAAGCGTGAG 58.305 40.909 0.00 0.00 36.48 3.51
4744 5194 6.127479 ACACAGTAAACCATGACACAACATTT 60.127 34.615 0.00 0.00 0.00 2.32
4792 5242 3.152341 CCACTTGATGAAGGAGTTTGCT 58.848 45.455 0.00 0.00 32.95 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.