Multiple sequence alignment - TraesCS1B01G358200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G358200 chr1B 100.000 3524 0 0 1 3524 587973772 587977295 0.000000e+00 6508.0
1 TraesCS1B01G358200 chr1B 90.371 2212 159 24 992 3175 587823301 587825486 0.000000e+00 2856.0
2 TraesCS1B01G358200 chr1B 96.198 789 29 1 1 789 344009989 344010776 0.000000e+00 1290.0
3 TraesCS1B01G358200 chr1B 92.056 428 32 2 1 426 528366482 528366055 5.030000e-168 601.0
4 TraesCS1B01G358200 chr1B 88.728 346 26 9 444 789 528365928 528365596 9.100000e-111 411.0
5 TraesCS1B01G358200 chr1B 81.169 154 27 2 1912 2064 429282980 429283132 4.780000e-24 122.0
6 TraesCS1B01G358200 chr1B 85.455 55 6 2 1225 1278 658364378 658364325 4.910000e-04 56.5
7 TraesCS1B01G358200 chr1D 88.846 2591 216 36 874 3436 434267354 434269899 0.000000e+00 3116.0
8 TraesCS1B01G358200 chr1D 71.080 778 176 42 1306 2064 317184380 317185127 1.020000e-30 145.0
9 TraesCS1B01G358200 chr1A 91.224 1732 122 13 1360 3083 532432950 532434659 0.000000e+00 2329.0
10 TraesCS1B01G358200 chr1A 90.476 441 39 1 927 1367 532431747 532432184 2.360000e-161 579.0
11 TraesCS1B01G358200 chr1A 89.825 285 29 0 1009 1293 532413099 532413383 2.000000e-97 366.0
12 TraesCS1B01G358200 chr1A 80.519 154 28 2 1912 2064 398137815 398137967 2.220000e-22 117.0
13 TraesCS1B01G358200 chr6B 95.814 430 16 2 1 429 599438276 599437848 0.000000e+00 693.0
14 TraesCS1B01G358200 chr6B 94.262 244 13 1 547 789 599437378 599437135 4.300000e-99 372.0
15 TraesCS1B01G358200 chr6B 93.431 137 9 0 422 558 599437804 599437668 1.660000e-48 204.0
16 TraesCS1B01G358200 chr3A 91.879 431 33 2 1 429 723588728 723589158 5.030000e-168 601.0
17 TraesCS1B01G358200 chr3A 82.812 128 15 6 1072 1196 478682224 478682101 1.340000e-19 108.0
18 TraesCS1B01G358200 chr3A 81.250 128 17 6 1072 1196 478675891 478675768 2.900000e-16 97.1
19 TraesCS1B01G358200 chr6A 88.631 431 46 3 1 429 481664804 481664375 4.030000e-144 521.0
20 TraesCS1B01G358200 chr6A 91.826 367 29 1 422 788 534642434 534642069 8.730000e-141 510.0
21 TraesCS1B01G358200 chr6A 90.494 263 25 0 527 789 553835666 553835404 7.240000e-92 348.0
22 TraesCS1B01G358200 chr6A 83.382 343 45 8 447 789 481664255 481663925 1.230000e-79 307.0
23 TraesCS1B01G358200 chr6A 91.146 192 15 2 1 190 534642818 534642627 3.490000e-65 259.0
24 TraesCS1B01G358200 chr6A 91.146 192 15 2 1 190 553836184 553835993 3.490000e-65 259.0
25 TraesCS1B01G358200 chr6A 93.333 150 10 0 280 429 534642627 534642478 4.580000e-54 222.0
26 TraesCS1B01G358200 chr6A 92.308 117 9 0 422 538 553835800 553835684 2.180000e-37 167.0
27 TraesCS1B01G358200 chr2A 88.399 431 48 2 1 429 300525483 300525053 5.210000e-143 518.0
28 TraesCS1B01G358200 chr2A 91.848 368 29 1 422 789 300525009 300524643 2.430000e-141 512.0
29 TraesCS1B01G358200 chr2A 93.103 203 14 0 422 624 77323353 77323151 7.400000e-77 298.0
30 TraesCS1B01G358200 chr2A 92.000 150 12 0 280 429 77323546 77323397 9.910000e-51 211.0
31 TraesCS1B01G358200 chr7A 91.576 368 30 1 422 789 555245824 555246190 1.130000e-139 507.0
32 TraesCS1B01G358200 chr7A 91.333 150 13 0 280 429 555245631 555245780 4.610000e-49 206.0
33 TraesCS1B01G358200 chr3B 88.539 349 25 10 444 789 456964294 456963958 3.270000e-110 409.0
34 TraesCS1B01G358200 chr3B 82.400 125 16 5 1075 1196 465218128 465218007 1.730000e-18 104.0
35 TraesCS1B01G358200 chr3B 79.286 140 22 6 1072 1208 465338389 465338254 1.350000e-14 91.6
36 TraesCS1B01G358200 chr3B 92.857 56 3 1 422 477 456964367 456964313 2.920000e-11 80.5
37 TraesCS1B01G358200 chr3D 80.714 140 20 6 1072 1208 359318115 359317980 6.220000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G358200 chr1B 587973772 587977295 3523 False 6508.000000 6508 100.000000 1 3524 1 chr1B.!!$F4 3523
1 TraesCS1B01G358200 chr1B 587823301 587825486 2185 False 2856.000000 2856 90.371000 992 3175 1 chr1B.!!$F3 2183
2 TraesCS1B01G358200 chr1B 344009989 344010776 787 False 1290.000000 1290 96.198000 1 789 1 chr1B.!!$F1 788
3 TraesCS1B01G358200 chr1B 528365596 528366482 886 True 506.000000 601 90.392000 1 789 2 chr1B.!!$R2 788
4 TraesCS1B01G358200 chr1D 434267354 434269899 2545 False 3116.000000 3116 88.846000 874 3436 1 chr1D.!!$F2 2562
5 TraesCS1B01G358200 chr1A 532431747 532434659 2912 False 1454.000000 2329 90.850000 927 3083 2 chr1A.!!$F3 2156
6 TraesCS1B01G358200 chr6B 599437135 599438276 1141 True 423.000000 693 94.502333 1 789 3 chr6B.!!$R1 788
7 TraesCS1B01G358200 chr6A 481663925 481664804 879 True 414.000000 521 86.006500 1 789 2 chr6A.!!$R1 788
8 TraesCS1B01G358200 chr6A 534642069 534642818 749 True 330.333333 510 92.101667 1 788 3 chr6A.!!$R2 787
9 TraesCS1B01G358200 chr6A 553835404 553836184 780 True 258.000000 348 91.316000 1 789 3 chr6A.!!$R3 788
10 TraesCS1B01G358200 chr2A 300524643 300525483 840 True 515.000000 518 90.123500 1 789 2 chr2A.!!$R2 788
11 TraesCS1B01G358200 chr7A 555245631 555246190 559 False 356.500000 507 91.454500 280 789 2 chr7A.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 1254 0.314935 AACTGCGTGGCTCATTTTGG 59.685 50.0 0.00 0.00 0.00 3.28 F
1769 3012 0.319641 AAGGCACCGAAACTCGAGAC 60.320 55.0 21.68 9.04 43.74 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 3400 0.474184 ACTGAACCCCACCTGACAAG 59.526 55.0 0.00 0.0 0.00 3.16 R
3273 4573 0.886563 GTTGCTCTGCTGCAGGATTT 59.113 50.0 27.79 0.0 44.27 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 8.630054 ACACTAAAGGATAGTGCACAATAAAA 57.370 30.769 21.04 0.00 46.46 1.52
696 1143 3.071479 GGTTTGGTTCACAGCTAATCGA 58.929 45.455 0.00 0.00 0.00 3.59
733 1181 4.871557 CCAAAAATAACGATCCCACGACTA 59.128 41.667 0.00 0.00 37.03 2.59
797 1245 9.367444 AGTTATAATATATCTAAACTGCGTGGC 57.633 33.333 6.00 0.00 0.00 5.01
798 1246 9.367444 GTTATAATATATCTAAACTGCGTGGCT 57.633 33.333 0.00 0.00 0.00 4.75
799 1247 9.582431 TTATAATATATCTAAACTGCGTGGCTC 57.418 33.333 0.00 0.00 0.00 4.70
800 1248 3.819564 ATATCTAAACTGCGTGGCTCA 57.180 42.857 0.00 0.00 0.00 4.26
801 1249 2.698855 ATCTAAACTGCGTGGCTCAT 57.301 45.000 0.00 0.00 0.00 2.90
802 1250 2.472695 TCTAAACTGCGTGGCTCATT 57.527 45.000 0.00 0.00 0.00 2.57
803 1251 2.778299 TCTAAACTGCGTGGCTCATTT 58.222 42.857 0.00 0.00 0.00 2.32
804 1252 3.146066 TCTAAACTGCGTGGCTCATTTT 58.854 40.909 0.00 0.00 0.00 1.82
805 1253 2.138596 AAACTGCGTGGCTCATTTTG 57.861 45.000 0.00 0.00 0.00 2.44
806 1254 0.314935 AACTGCGTGGCTCATTTTGG 59.685 50.000 0.00 0.00 0.00 3.28
807 1255 0.823356 ACTGCGTGGCTCATTTTGGT 60.823 50.000 0.00 0.00 0.00 3.67
808 1256 0.387622 CTGCGTGGCTCATTTTGGTG 60.388 55.000 0.00 0.00 0.00 4.17
809 1257 1.106351 TGCGTGGCTCATTTTGGTGT 61.106 50.000 0.00 0.00 0.00 4.16
810 1258 0.664166 GCGTGGCTCATTTTGGTGTG 60.664 55.000 0.00 0.00 0.00 3.82
811 1259 0.664166 CGTGGCTCATTTTGGTGTGC 60.664 55.000 0.00 0.00 37.75 4.57
816 1264 3.806625 GCTCATTTTGGTGTGCCATAT 57.193 42.857 0.00 0.00 45.56 1.78
817 1265 3.709987 GCTCATTTTGGTGTGCCATATC 58.290 45.455 0.00 0.00 45.56 1.63
818 1266 3.382546 GCTCATTTTGGTGTGCCATATCT 59.617 43.478 0.00 0.00 45.56 1.98
819 1267 4.580167 GCTCATTTTGGTGTGCCATATCTA 59.420 41.667 0.00 0.00 45.56 1.98
820 1268 5.506317 GCTCATTTTGGTGTGCCATATCTAC 60.506 44.000 0.00 0.00 45.56 2.59
821 1269 5.754782 TCATTTTGGTGTGCCATATCTACT 58.245 37.500 0.00 0.00 45.56 2.57
822 1270 6.186957 TCATTTTGGTGTGCCATATCTACTT 58.813 36.000 0.00 0.00 45.56 2.24
823 1271 5.895636 TTTTGGTGTGCCATATCTACTTG 57.104 39.130 0.00 0.00 45.56 3.16
824 1272 2.917933 TGGTGTGCCATATCTACTTGC 58.082 47.619 0.00 0.00 40.46 4.01
825 1273 2.505407 TGGTGTGCCATATCTACTTGCT 59.495 45.455 0.00 0.00 40.46 3.91
826 1274 3.709141 TGGTGTGCCATATCTACTTGCTA 59.291 43.478 0.00 0.00 40.46 3.49
827 1275 4.202253 TGGTGTGCCATATCTACTTGCTAG 60.202 45.833 0.00 0.00 40.46 3.42
828 1276 4.202264 GGTGTGCCATATCTACTTGCTAGT 60.202 45.833 6.00 6.00 35.01 2.57
829 1277 4.985409 GTGTGCCATATCTACTTGCTAGTC 59.015 45.833 3.45 0.00 35.78 2.59
830 1278 4.895889 TGTGCCATATCTACTTGCTAGTCT 59.104 41.667 3.45 0.00 35.78 3.24
831 1279 5.221322 TGTGCCATATCTACTTGCTAGTCTG 60.221 44.000 3.45 0.00 35.78 3.51
832 1280 4.895889 TGCCATATCTACTTGCTAGTCTGT 59.104 41.667 3.45 0.00 35.78 3.41
833 1281 6.016192 GTGCCATATCTACTTGCTAGTCTGTA 60.016 42.308 3.45 0.00 35.78 2.74
834 1282 6.721668 TGCCATATCTACTTGCTAGTCTGTAT 59.278 38.462 3.45 0.00 35.78 2.29
835 1283 7.032580 GCCATATCTACTTGCTAGTCTGTATG 58.967 42.308 3.45 10.79 35.78 2.39
836 1284 7.542890 CCATATCTACTTGCTAGTCTGTATGG 58.457 42.308 20.29 20.29 35.78 2.74
837 1285 7.177568 CCATATCTACTTGCTAGTCTGTATGGT 59.822 40.741 22.75 5.59 35.78 3.55
838 1286 9.232473 CATATCTACTTGCTAGTCTGTATGGTA 57.768 37.037 3.45 0.00 35.78 3.25
839 1287 9.983024 ATATCTACTTGCTAGTCTGTATGGTAT 57.017 33.333 3.45 0.00 35.78 2.73
840 1288 7.747155 TCTACTTGCTAGTCTGTATGGTATC 57.253 40.000 3.45 0.00 35.78 2.24
841 1289 7.287810 TCTACTTGCTAGTCTGTATGGTATCA 58.712 38.462 3.45 0.00 35.78 2.15
842 1290 6.985653 ACTTGCTAGTCTGTATGGTATCAT 57.014 37.500 0.00 0.00 37.40 2.45
843 1291 7.366847 ACTTGCTAGTCTGTATGGTATCATT 57.633 36.000 0.00 0.00 34.96 2.57
844 1292 7.437748 ACTTGCTAGTCTGTATGGTATCATTC 58.562 38.462 0.00 0.00 34.96 2.67
845 1293 6.976934 TGCTAGTCTGTATGGTATCATTCA 57.023 37.500 0.00 0.00 34.96 2.57
846 1294 6.749139 TGCTAGTCTGTATGGTATCATTCAC 58.251 40.000 0.00 0.00 34.96 3.18
847 1295 6.323739 TGCTAGTCTGTATGGTATCATTCACA 59.676 38.462 0.00 0.00 34.96 3.58
848 1296 7.147742 TGCTAGTCTGTATGGTATCATTCACAA 60.148 37.037 0.00 0.00 34.96 3.33
849 1297 7.169982 GCTAGTCTGTATGGTATCATTCACAAC 59.830 40.741 0.00 0.00 34.96 3.32
850 1298 7.187824 AGTCTGTATGGTATCATTCACAACT 57.812 36.000 0.00 0.00 34.96 3.16
851 1299 8.306313 AGTCTGTATGGTATCATTCACAACTA 57.694 34.615 0.00 0.00 34.96 2.24
852 1300 8.928448 AGTCTGTATGGTATCATTCACAACTAT 58.072 33.333 0.00 0.00 34.96 2.12
905 1353 0.325484 TGCAGCCCAGCCCATTATTT 60.325 50.000 0.00 0.00 0.00 1.40
912 1360 2.109774 CCAGCCCATTATTTTGCTCCA 58.890 47.619 0.00 0.00 30.08 3.86
914 1362 3.135167 CCAGCCCATTATTTTGCTCCATT 59.865 43.478 0.00 0.00 30.08 3.16
915 1363 4.384427 CCAGCCCATTATTTTGCTCCATTT 60.384 41.667 0.00 0.00 30.08 2.32
925 1373 0.677731 TGCTCCATTTCGGCCTCTTG 60.678 55.000 0.00 0.00 33.14 3.02
967 1415 0.322975 AGCCAGATCTGCGTGAAGTT 59.677 50.000 17.76 0.00 0.00 2.66
1049 1515 3.047877 CAAGACGGCACCGGAACC 61.048 66.667 9.46 8.14 44.69 3.62
1117 1583 1.958288 AATCATATCCCTCCTCCCCG 58.042 55.000 0.00 0.00 0.00 5.73
1195 1661 4.796231 CCCCGCTCAACCTCGACG 62.796 72.222 0.00 0.00 0.00 5.12
1213 1679 2.046700 TTTCCCACATCGACGGGC 60.047 61.111 10.86 0.00 42.75 6.13
1257 1723 2.035632 GTGTCCAAGATCCTCTCCGAT 58.964 52.381 0.00 0.00 0.00 4.18
1299 1765 4.767255 CTGACCGCCTGGCTCCAC 62.767 72.222 17.92 6.13 39.70 4.02
1304 1770 2.191375 CGCCTGGCTCCACATCAT 59.809 61.111 17.92 0.00 0.00 2.45
1458 2697 1.269257 GGCAACTGCAGGTTCTTTGTC 60.269 52.381 19.93 10.72 44.36 3.18
1505 2744 1.451067 CCTTGCCTTGAGAAGCTCAG 58.549 55.000 0.00 0.00 41.75 3.35
1570 2809 3.412624 GATGGCTGCCCTGTCCTCC 62.413 68.421 17.53 0.00 0.00 4.30
1632 2871 4.326826 TGGTCATCAATTCACCAACTCTC 58.673 43.478 0.00 0.00 37.25 3.20
1698 2940 2.806945 TAGAAAATGCCCCCAGACTG 57.193 50.000 0.00 0.00 0.00 3.51
1724 2967 9.571816 GGAAAGATTGATCAGAATTAATCCTCT 57.428 33.333 0.00 0.00 38.18 3.69
1764 3007 2.096013 GCTAATCAAGGCACCGAAACTC 59.904 50.000 0.00 0.00 0.00 3.01
1769 3012 0.319641 AAGGCACCGAAACTCGAGAC 60.320 55.000 21.68 9.04 43.74 3.36
2010 3258 1.565759 TGGCCCTAATCTTGATGCAGT 59.434 47.619 0.00 0.00 0.00 4.40
2011 3259 2.225467 GGCCCTAATCTTGATGCAGTC 58.775 52.381 0.00 0.00 0.00 3.51
2095 3343 8.665643 TCTTTCTTCGATAGTTTTTGGTGTTA 57.334 30.769 0.00 0.00 37.40 2.41
2135 3384 7.758980 CGGTCATTTCATACATTTTCCAATGAA 59.241 33.333 1.97 0.00 42.35 2.57
2165 3414 2.242708 TGTTTTACTTGTCAGGTGGGGT 59.757 45.455 0.00 0.00 0.00 4.95
2171 3420 0.182537 TTGTCAGGTGGGGTTCAGTG 59.817 55.000 0.00 0.00 0.00 3.66
2189 3438 8.349983 GGTTCAGTGTTTCTATTGTGTAATTGT 58.650 33.333 0.00 0.00 0.00 2.71
2190 3439 9.382244 GTTCAGTGTTTCTATTGTGTAATTGTC 57.618 33.333 0.00 0.00 0.00 3.18
2191 3440 8.902540 TCAGTGTTTCTATTGTGTAATTGTCT 57.097 30.769 0.00 0.00 0.00 3.41
2265 3517 6.586344 TCATCTTCAACCACAAGATCCTATC 58.414 40.000 0.00 0.00 38.33 2.08
2302 3554 5.637006 TCTCAGAGAAGTAGAGTTGAAGC 57.363 43.478 0.00 0.00 0.00 3.86
2591 3852 1.341080 CCCTTCAGGTTTTGTGGCAT 58.659 50.000 0.00 0.00 0.00 4.40
2608 3873 1.069432 GCATGTCTTGTCACTGTGCAG 60.069 52.381 2.12 0.00 32.34 4.41
2668 3934 5.106436 TGCTTTAGAGATTGTCATGCAACTG 60.106 40.000 0.00 0.00 40.28 3.16
2669 3935 5.675575 GCTTTAGAGATTGTCATGCAACTGG 60.676 44.000 0.00 0.00 40.28 4.00
2670 3936 3.430042 AGAGATTGTCATGCAACTGGT 57.570 42.857 0.00 0.00 40.28 4.00
2679 3948 6.494893 TGTCATGCAACTGGTATTTTACTC 57.505 37.500 0.00 0.00 0.00 2.59
2708 3978 5.711506 TGTTATTGAGATGTGGCATGTCTTT 59.288 36.000 0.00 0.00 0.00 2.52
2718 3988 3.018856 TGGCATGTCTTTGGCATTCTAG 58.981 45.455 0.00 0.00 46.02 2.43
2732 4002 3.812053 GCATTCTAGATTGCGAATGACCT 59.188 43.478 20.44 0.00 45.78 3.85
2750 4020 5.305585 TGACCTCAACCTAGTTGTTCATTC 58.694 41.667 7.30 0.69 43.23 2.67
2775 4045 7.938490 TCTGATTCAGCAATTAATGTATGGCTA 59.062 33.333 8.89 0.00 32.98 3.93
2875 4146 1.490693 AAGCACTGTTCTGTCGCGTG 61.491 55.000 5.77 0.00 0.00 5.34
2881 4152 0.596600 TGTTCTGTCGCGTGGTCTTC 60.597 55.000 5.77 0.00 0.00 2.87
2941 4212 7.745620 AGGTGAAGGAGTAAAAGTTAACATG 57.254 36.000 8.61 0.00 0.00 3.21
2942 4213 7.514721 AGGTGAAGGAGTAAAAGTTAACATGA 58.485 34.615 8.61 0.00 0.00 3.07
3092 4392 6.983474 TGACTGTGTATGTTGGTTGATATG 57.017 37.500 0.00 0.00 0.00 1.78
3113 4413 5.387113 TGCTTCATTCCCTATTACACCAT 57.613 39.130 0.00 0.00 0.00 3.55
3126 4426 7.122055 CCCTATTACACCATCTTACTTGCAAAA 59.878 37.037 0.00 0.00 0.00 2.44
3135 4435 8.184192 ACCATCTTACTTGCAAAATTAATCTCG 58.816 33.333 0.00 0.00 0.00 4.04
3161 4461 4.963318 TTGATCTGAAGAAGTGTCTGGT 57.037 40.909 0.00 0.00 33.05 4.00
3243 4543 8.034058 AGTTAGAAAATCTGTATGTTCTGTGC 57.966 34.615 1.80 0.00 39.56 4.57
3246 4546 7.840342 AGAAAATCTGTATGTTCTGTGCTAG 57.160 36.000 0.00 0.00 38.12 3.42
3254 4554 3.192541 TGTTCTGTGCTAGTGCTTTGA 57.807 42.857 0.00 0.00 40.48 2.69
3255 4555 3.540617 TGTTCTGTGCTAGTGCTTTGAA 58.459 40.909 0.00 0.00 40.48 2.69
3256 4556 4.136796 TGTTCTGTGCTAGTGCTTTGAAT 58.863 39.130 0.00 0.00 40.48 2.57
3257 4557 4.580167 TGTTCTGTGCTAGTGCTTTGAATT 59.420 37.500 0.00 0.00 40.48 2.17
3258 4558 5.067674 TGTTCTGTGCTAGTGCTTTGAATTT 59.932 36.000 0.00 0.00 40.48 1.82
3259 4559 5.772825 TCTGTGCTAGTGCTTTGAATTTT 57.227 34.783 0.00 0.00 40.48 1.82
3260 4560 6.147864 TCTGTGCTAGTGCTTTGAATTTTT 57.852 33.333 0.00 0.00 40.48 1.94
3281 4581 4.759516 TTTTGTCTCCGTTAAATCCTGC 57.240 40.909 0.00 0.00 0.00 4.85
3313 4613 7.068348 AGCAACTGCATCTTGAATTCTTGATAT 59.932 33.333 7.05 0.00 45.16 1.63
3337 4637 0.040646 TCCTCCTGGTCATACACGGT 59.959 55.000 0.00 0.00 34.23 4.83
3378 4678 7.607615 TTTCTAGTGTGGTAGTTTAAGGACT 57.392 36.000 0.00 0.00 0.00 3.85
3395 4695 8.873215 TTAAGGACTCAGTTGATATTCGATTC 57.127 34.615 0.00 0.00 0.00 2.52
3398 4698 7.151308 AGGACTCAGTTGATATTCGATTCATC 58.849 38.462 0.00 0.00 0.00 2.92
3417 4717 4.937015 TCATCGTCATGCTCAAATCAAGAA 59.063 37.500 0.00 0.00 0.00 2.52
3472 4773 9.620259 ATTATCCTTTTACATTCAGAGAGAACC 57.380 33.333 0.00 0.00 39.49 3.62
3473 4774 6.433847 TCCTTTTACATTCAGAGAGAACCA 57.566 37.500 0.00 0.00 39.49 3.67
3474 4775 6.837312 TCCTTTTACATTCAGAGAGAACCAA 58.163 36.000 0.00 0.00 39.49 3.67
3475 4776 7.461749 TCCTTTTACATTCAGAGAGAACCAAT 58.538 34.615 0.00 0.00 39.49 3.16
3476 4777 7.944554 TCCTTTTACATTCAGAGAGAACCAATT 59.055 33.333 0.00 0.00 39.49 2.32
3477 4778 8.579863 CCTTTTACATTCAGAGAGAACCAATTT 58.420 33.333 0.00 0.00 39.49 1.82
3478 4779 9.617975 CTTTTACATTCAGAGAGAACCAATTTC 57.382 33.333 0.00 0.00 39.49 2.17
3479 4780 7.687941 TTACATTCAGAGAGAACCAATTTCC 57.312 36.000 0.00 0.00 39.49 3.13
3480 4781 5.634118 ACATTCAGAGAGAACCAATTTCCA 58.366 37.500 0.00 0.00 39.49 3.53
3481 4782 6.251471 ACATTCAGAGAGAACCAATTTCCAT 58.749 36.000 0.00 0.00 39.49 3.41
3482 4783 6.723052 ACATTCAGAGAGAACCAATTTCCATT 59.277 34.615 0.00 0.00 39.49 3.16
3483 4784 7.234166 ACATTCAGAGAGAACCAATTTCCATTT 59.766 33.333 0.00 0.00 39.49 2.32
3484 4785 6.579666 TCAGAGAGAACCAATTTCCATTTG 57.420 37.500 0.00 0.00 34.32 2.32
3485 4786 6.306199 TCAGAGAGAACCAATTTCCATTTGA 58.694 36.000 0.00 0.00 34.32 2.69
3486 4787 6.777091 TCAGAGAGAACCAATTTCCATTTGAA 59.223 34.615 0.00 0.00 34.32 2.69
3487 4788 6.865205 CAGAGAGAACCAATTTCCATTTGAAC 59.135 38.462 0.00 0.00 34.32 3.18
3488 4789 6.550854 AGAGAGAACCAATTTCCATTTGAACA 59.449 34.615 0.00 0.00 34.32 3.18
3489 4790 7.069826 AGAGAGAACCAATTTCCATTTGAACAA 59.930 33.333 0.00 0.00 34.32 2.83
3490 4791 6.986231 AGAGAACCAATTTCCATTTGAACAAC 59.014 34.615 0.00 0.00 34.32 3.32
3491 4792 6.648192 AGAACCAATTTCCATTTGAACAACA 58.352 32.000 0.00 0.00 34.32 3.33
3492 4793 7.281841 AGAACCAATTTCCATTTGAACAACAT 58.718 30.769 0.00 0.00 34.32 2.71
3493 4794 6.864360 ACCAATTTCCATTTGAACAACATG 57.136 33.333 0.00 0.00 31.05 3.21
3494 4795 6.355747 ACCAATTTCCATTTGAACAACATGT 58.644 32.000 0.00 0.00 31.05 3.21
3495 4796 7.504403 ACCAATTTCCATTTGAACAACATGTA 58.496 30.769 0.00 0.00 31.05 2.29
3496 4797 7.656948 ACCAATTTCCATTTGAACAACATGTAG 59.343 33.333 0.00 0.00 31.05 2.74
3497 4798 7.871973 CCAATTTCCATTTGAACAACATGTAGA 59.128 33.333 0.00 0.00 31.05 2.59
3498 4799 9.258826 CAATTTCCATTTGAACAACATGTAGAA 57.741 29.630 0.00 0.00 31.05 2.10
3500 4801 9.643693 ATTTCCATTTGAACAACATGTAGAATC 57.356 29.630 0.00 0.00 31.05 2.52
3501 4802 7.757941 TCCATTTGAACAACATGTAGAATCA 57.242 32.000 0.00 0.00 0.00 2.57
3502 4803 8.175925 TCCATTTGAACAACATGTAGAATCAA 57.824 30.769 0.00 5.53 0.00 2.57
3503 4804 8.637099 TCCATTTGAACAACATGTAGAATCAAA 58.363 29.630 21.20 21.20 38.98 2.69
3504 4805 9.426837 CCATTTGAACAACATGTAGAATCAAAT 57.573 29.630 22.77 22.77 43.15 2.32
3506 4807 9.985730 ATTTGAACAACATGTAGAATCAAATGT 57.014 25.926 25.22 12.23 41.71 2.71
3507 4808 9.462174 TTTGAACAACATGTAGAATCAAATGTC 57.538 29.630 17.77 5.23 32.20 3.06
3508 4809 8.394971 TGAACAACATGTAGAATCAAATGTCT 57.605 30.769 0.00 0.00 32.20 3.41
3509 4810 8.506437 TGAACAACATGTAGAATCAAATGTCTC 58.494 33.333 0.00 0.00 32.20 3.36
3510 4811 7.383102 ACAACATGTAGAATCAAATGTCTCC 57.617 36.000 0.00 0.00 32.20 3.71
3511 4812 6.942005 ACAACATGTAGAATCAAATGTCTCCA 59.058 34.615 0.00 0.00 32.20 3.86
3512 4813 6.992063 ACATGTAGAATCAAATGTCTCCAC 57.008 37.500 0.00 0.00 0.00 4.02
3513 4814 6.475504 ACATGTAGAATCAAATGTCTCCACA 58.524 36.000 0.00 0.00 36.78 4.17
3514 4815 6.372659 ACATGTAGAATCAAATGTCTCCACAC 59.627 38.462 0.00 0.00 34.48 3.82
3515 4816 5.863965 TGTAGAATCAAATGTCTCCACACA 58.136 37.500 0.00 0.00 34.48 3.72
3516 4817 5.934043 TGTAGAATCAAATGTCTCCACACAG 59.066 40.000 0.00 0.00 34.48 3.66
3517 4818 3.755378 AGAATCAAATGTCTCCACACAGC 59.245 43.478 0.00 0.00 34.48 4.40
3518 4819 2.936919 TCAAATGTCTCCACACAGCT 57.063 45.000 0.00 0.00 34.48 4.24
3519 4820 2.497138 TCAAATGTCTCCACACAGCTG 58.503 47.619 13.48 13.48 34.48 4.24
3520 4821 2.104622 TCAAATGTCTCCACACAGCTGA 59.895 45.455 23.35 0.00 34.48 4.26
3521 4822 2.880268 CAAATGTCTCCACACAGCTGAA 59.120 45.455 23.35 0.00 34.48 3.02
3522 4823 3.430042 AATGTCTCCACACAGCTGAAT 57.570 42.857 23.35 4.45 34.48 2.57
3523 4824 2.936919 TGTCTCCACACAGCTGAATT 57.063 45.000 23.35 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 5.942826 GGAGAAGACTCAATCATGGTTTCTT 59.057 40.000 4.19 4.19 44.22 2.52
696 1143 6.199342 CGTTATTTTTGGATGTTTCAACCGTT 59.801 34.615 0.00 0.00 0.00 4.44
733 1181 1.985159 TCCCAGGCTATCAGTGTTTGT 59.015 47.619 0.00 0.00 0.00 2.83
789 1237 0.387622 CACCAAAATGAGCCACGCAG 60.388 55.000 0.00 0.00 0.00 5.18
790 1238 1.106351 ACACCAAAATGAGCCACGCA 61.106 50.000 0.00 0.00 0.00 5.24
791 1239 0.664166 CACACCAAAATGAGCCACGC 60.664 55.000 0.00 0.00 0.00 5.34
792 1240 0.664166 GCACACCAAAATGAGCCACG 60.664 55.000 0.00 0.00 30.79 4.94
793 1241 3.199764 GCACACCAAAATGAGCCAC 57.800 52.632 0.00 0.00 30.79 5.01
795 1243 4.994744 GGCACACCAAAATGAGCC 57.005 55.556 0.00 0.00 46.85 4.70
802 1250 9.426144 ACTAGCAAGTAGATATGGCACACCAAA 62.426 40.741 0.00 0.00 41.62 3.28
803 1251 8.042725 ACTAGCAAGTAGATATGGCACACCAA 62.043 42.308 0.00 0.00 41.62 3.67
804 1252 6.628476 ACTAGCAAGTAGATATGGCACACCA 61.628 44.000 0.00 0.00 42.23 4.17
805 1253 4.202264 ACTAGCAAGTAGATATGGCACACC 60.202 45.833 0.00 0.00 35.59 4.16
806 1254 4.950050 ACTAGCAAGTAGATATGGCACAC 58.050 43.478 0.00 0.00 35.59 3.82
807 1255 4.895889 AGACTAGCAAGTAGATATGGCACA 59.104 41.667 0.00 0.00 38.68 4.57
808 1256 5.221342 ACAGACTAGCAAGTAGATATGGCAC 60.221 44.000 0.00 0.00 35.56 5.01
809 1257 4.895889 ACAGACTAGCAAGTAGATATGGCA 59.104 41.667 0.00 0.00 35.56 4.92
810 1258 5.461032 ACAGACTAGCAAGTAGATATGGC 57.539 43.478 0.00 0.00 35.56 4.40
811 1259 7.177568 ACCATACAGACTAGCAAGTAGATATGG 59.822 40.741 14.16 14.16 35.56 2.74
812 1260 8.116651 ACCATACAGACTAGCAAGTAGATATG 57.883 38.462 0.00 0.00 35.56 1.78
813 1261 9.983024 ATACCATACAGACTAGCAAGTAGATAT 57.017 33.333 0.00 0.00 35.56 1.63
814 1262 9.451002 GATACCATACAGACTAGCAAGTAGATA 57.549 37.037 0.00 0.00 35.56 1.98
815 1263 7.945109 TGATACCATACAGACTAGCAAGTAGAT 59.055 37.037 0.00 0.00 35.56 1.98
816 1264 7.287810 TGATACCATACAGACTAGCAAGTAGA 58.712 38.462 0.00 0.00 35.56 2.59
817 1265 7.511959 TGATACCATACAGACTAGCAAGTAG 57.488 40.000 0.00 0.00 35.56 2.57
818 1266 8.478775 AATGATACCATACAGACTAGCAAGTA 57.521 34.615 0.00 0.00 31.78 2.24
819 1267 6.985653 ATGATACCATACAGACTAGCAAGT 57.014 37.500 0.00 0.00 39.21 3.16
820 1268 7.383572 GTGAATGATACCATACAGACTAGCAAG 59.616 40.741 0.00 0.00 31.59 4.01
821 1269 7.147742 TGTGAATGATACCATACAGACTAGCAA 60.148 37.037 0.00 0.00 31.59 3.91
822 1270 6.323739 TGTGAATGATACCATACAGACTAGCA 59.676 38.462 0.00 0.00 31.59 3.49
823 1271 6.749139 TGTGAATGATACCATACAGACTAGC 58.251 40.000 0.00 0.00 31.59 3.42
824 1272 8.417106 AGTTGTGAATGATACCATACAGACTAG 58.583 37.037 0.00 0.00 31.59 2.57
825 1273 8.306313 AGTTGTGAATGATACCATACAGACTA 57.694 34.615 0.00 0.00 31.59 2.59
826 1274 7.187824 AGTTGTGAATGATACCATACAGACT 57.812 36.000 0.00 0.00 31.59 3.24
868 1316 0.796312 CAGGACGTGGTGTTATGCAC 59.204 55.000 0.00 0.00 46.97 4.57
869 1317 0.953471 GCAGGACGTGGTGTTATGCA 60.953 55.000 0.00 0.00 40.27 3.96
870 1318 0.953471 TGCAGGACGTGGTGTTATGC 60.953 55.000 0.00 0.00 40.68 3.14
871 1319 1.078709 CTGCAGGACGTGGTGTTATG 58.921 55.000 5.57 0.00 0.00 1.90
872 1320 0.673644 GCTGCAGGACGTGGTGTTAT 60.674 55.000 17.12 0.00 0.00 1.89
905 1353 0.038166 AAGAGGCCGAAATGGAGCAA 59.962 50.000 0.00 0.00 42.00 3.91
956 1404 0.940126 ACTGAGCAAACTTCACGCAG 59.060 50.000 0.00 0.00 37.27 5.18
967 1415 0.315251 CGAGGAGTGACACTGAGCAA 59.685 55.000 14.14 0.00 0.00 3.91
1018 1484 1.079127 TCTTGGCTACAGGAAGCGC 60.079 57.895 0.00 0.00 43.74 5.92
1019 1485 1.078759 CGTCTTGGCTACAGGAAGCG 61.079 60.000 0.00 0.00 43.74 4.68
1020 1486 0.741221 CCGTCTTGGCTACAGGAAGC 60.741 60.000 0.00 0.00 41.99 3.86
1047 1513 1.227263 CAGATCGATTTCCGGCGGT 60.227 57.895 27.32 6.51 39.14 5.68
1049 1515 1.502231 AATCAGATCGATTTCCGGCG 58.498 50.000 0.00 0.00 41.83 6.46
1129 1595 2.124570 GAGGGATGTGGTGCGCAT 60.125 61.111 15.91 0.00 37.29 4.73
1161 1627 2.524394 GAGGAGCGCCATAGGGGA 60.524 66.667 9.88 0.00 40.01 4.81
1293 1759 1.227674 GGGGTCGATGATGTGGAGC 60.228 63.158 0.00 0.00 32.96 4.70
1332 1798 1.745264 CTGAAGATCTCGGAGGGCC 59.255 63.158 4.96 0.00 31.20 5.80
1347 1813 1.145945 AGCCATAGGTCGATCTCCTGA 59.854 52.381 0.00 0.00 36.60 3.86
1362 2601 0.974010 TTTCGTACCGAGGGAGCCAT 60.974 55.000 0.00 0.00 37.14 4.40
1505 2744 4.386049 CCCGTACGAAGATAAATCTCATGC 59.614 45.833 18.76 0.00 35.76 4.06
1632 2871 1.798223 TCGTTTGTGCCGATTCTCTTG 59.202 47.619 0.00 0.00 0.00 3.02
1698 2940 9.571816 AGAGGATTAATTCTGATCAATCTTTCC 57.428 33.333 0.00 0.00 0.00 3.13
1724 2967 0.613260 CCGGATGGTTGAGTCTGGAA 59.387 55.000 0.00 0.00 42.38 3.53
1764 3007 1.734465 GTCATGAAGCCAAAGGTCTCG 59.266 52.381 0.00 0.00 0.00 4.04
1769 3012 1.466167 CGTCTGTCATGAAGCCAAAGG 59.534 52.381 0.00 0.00 0.00 3.11
2135 3384 8.576442 CACCTGACAAGTAAAACAAGGATTAAT 58.424 33.333 0.00 0.00 0.00 1.40
2137 3386 6.488683 CCACCTGACAAGTAAAACAAGGATTA 59.511 38.462 0.00 0.00 0.00 1.75
2151 3400 0.474184 ACTGAACCCCACCTGACAAG 59.526 55.000 0.00 0.00 0.00 3.16
2165 3414 9.337396 AGACAATTACACAATAGAAACACTGAA 57.663 29.630 0.00 0.00 0.00 3.02
2302 3554 6.039047 ACATCTGTTCTGCTGCCAATATAAAG 59.961 38.462 0.00 0.00 0.00 1.85
2591 3852 2.093500 AGTTCTGCACAGTGACAAGACA 60.093 45.455 4.15 0.00 0.00 3.41
2608 3873 3.181476 ACAAAGTGCCATGTTTCCAGTTC 60.181 43.478 0.00 0.00 0.00 3.01
2668 3934 9.309516 TCTCAATAACATGACGAGTAAAATACC 57.690 33.333 0.00 0.00 0.00 2.73
2679 3948 3.622612 TGCCACATCTCAATAACATGACG 59.377 43.478 0.00 0.00 0.00 4.35
2718 3988 2.359900 AGGTTGAGGTCATTCGCAATC 58.640 47.619 0.00 0.00 0.00 2.67
2750 4020 6.978338 AGCCATACATTAATTGCTGAATCAG 58.022 36.000 5.78 5.78 34.12 2.90
2775 4045 4.505390 CCCCCAAACAAAGCAAGATTTCAT 60.505 41.667 0.00 0.00 0.00 2.57
2833 4103 9.196552 GCTTCATCAAGTTACTTGCTAATTTTT 57.803 29.630 19.24 0.00 40.84 1.94
2834 4104 8.359642 TGCTTCATCAAGTTACTTGCTAATTTT 58.640 29.630 19.24 0.00 40.84 1.82
2835 4105 7.809806 GTGCTTCATCAAGTTACTTGCTAATTT 59.190 33.333 19.24 0.00 40.84 1.82
2838 4108 5.997746 AGTGCTTCATCAAGTTACTTGCTAA 59.002 36.000 19.24 11.82 40.84 3.09
2852 4123 1.127582 GCGACAGAACAGTGCTTCATC 59.872 52.381 0.00 0.00 0.00 2.92
2875 4146 6.597280 AGCTATGATTCTCACAAAAGAAGACC 59.403 38.462 0.00 0.00 38.60 3.85
3019 4290 5.178797 AGTATTGCATACAGGACACTCAAC 58.821 41.667 0.00 0.00 38.21 3.18
3045 4316 7.250569 CAAGTATTGCATACGGTCTCAAAAAT 58.749 34.615 0.00 0.00 40.39 1.82
3092 4392 5.625150 AGATGGTGTAATAGGGAATGAAGC 58.375 41.667 0.00 0.00 0.00 3.86
3113 4413 9.959749 AAAACGAGATTAATTTTGCAAGTAAGA 57.040 25.926 0.00 0.00 0.00 2.10
3142 4442 5.392767 TGTACCAGACACTTCTTCAGATC 57.607 43.478 0.00 0.00 31.20 2.75
3175 4475 5.943349 TGGACCTCCAATACGAAGAAATA 57.057 39.130 0.00 0.00 44.35 1.40
3188 4488 5.715439 AGTTATCATCATTTGGACCTCCA 57.285 39.130 0.00 0.00 45.94 3.86
3220 4520 9.371136 CTAGCACAGAACATACAGATTTTCTAA 57.629 33.333 0.00 0.00 31.62 2.10
3222 4522 7.332926 CACTAGCACAGAACATACAGATTTTCT 59.667 37.037 0.00 0.00 33.25 2.52
3259 4559 4.580995 TGCAGGATTTAACGGAGACAAAAA 59.419 37.500 0.00 0.00 0.00 1.94
3260 4560 4.138290 TGCAGGATTTAACGGAGACAAAA 58.862 39.130 0.00 0.00 0.00 2.44
3261 4561 3.745799 TGCAGGATTTAACGGAGACAAA 58.254 40.909 0.00 0.00 0.00 2.83
3262 4562 3.334691 CTGCAGGATTTAACGGAGACAA 58.665 45.455 5.57 0.00 0.00 3.18
3263 4563 2.935238 GCTGCAGGATTTAACGGAGACA 60.935 50.000 17.12 0.00 0.00 3.41
3264 4564 1.666189 GCTGCAGGATTTAACGGAGAC 59.334 52.381 17.12 0.00 0.00 3.36
3265 4565 1.277842 TGCTGCAGGATTTAACGGAGA 59.722 47.619 17.12 0.00 0.00 3.71
3266 4566 1.667724 CTGCTGCAGGATTTAACGGAG 59.332 52.381 21.71 0.00 0.00 4.63
3267 4567 1.277842 TCTGCTGCAGGATTTAACGGA 59.722 47.619 27.79 4.21 31.51 4.69
3268 4568 1.667724 CTCTGCTGCAGGATTTAACGG 59.332 52.381 27.79 1.58 31.51 4.44
3269 4569 1.063174 GCTCTGCTGCAGGATTTAACG 59.937 52.381 27.79 0.00 31.51 3.18
3270 4570 2.086869 TGCTCTGCTGCAGGATTTAAC 58.913 47.619 27.79 11.05 38.12 2.01
3271 4571 2.489329 GTTGCTCTGCTGCAGGATTTAA 59.511 45.455 27.79 13.86 44.27 1.52
3272 4572 2.086869 GTTGCTCTGCTGCAGGATTTA 58.913 47.619 27.79 8.71 44.27 1.40
3273 4573 0.886563 GTTGCTCTGCTGCAGGATTT 59.113 50.000 27.79 0.00 44.27 2.17
3313 4613 3.118775 CGTGTATGACCAGGAGGAATGAA 60.119 47.826 0.00 0.00 38.69 2.57
3362 4662 5.850614 TCAACTGAGTCCTTAAACTACCAC 58.149 41.667 0.00 0.00 0.00 4.16
3395 4695 4.870221 TCTTGATTTGAGCATGACGATG 57.130 40.909 0.00 0.00 0.00 3.84
3398 4698 6.805271 AGAAAATTCTTGATTTGAGCATGACG 59.195 34.615 0.00 0.00 37.98 4.35
3446 4747 9.620259 GGTTCTCTCTGAATGTAAAAGGATAAT 57.380 33.333 0.00 0.00 36.99 1.28
3447 4748 8.602424 TGGTTCTCTCTGAATGTAAAAGGATAA 58.398 33.333 0.00 0.00 36.99 1.75
3448 4749 8.146053 TGGTTCTCTCTGAATGTAAAAGGATA 57.854 34.615 0.00 0.00 36.99 2.59
3449 4750 7.020827 TGGTTCTCTCTGAATGTAAAAGGAT 57.979 36.000 0.00 0.00 36.99 3.24
3450 4751 6.433847 TGGTTCTCTCTGAATGTAAAAGGA 57.566 37.500 0.00 0.00 36.99 3.36
3451 4752 7.693969 ATTGGTTCTCTCTGAATGTAAAAGG 57.306 36.000 0.00 0.00 36.99 3.11
3452 4753 9.617975 GAAATTGGTTCTCTCTGAATGTAAAAG 57.382 33.333 0.00 0.00 36.99 2.27
3453 4754 8.576442 GGAAATTGGTTCTCTCTGAATGTAAAA 58.424 33.333 0.00 0.00 36.99 1.52
3454 4755 7.723616 TGGAAATTGGTTCTCTCTGAATGTAAA 59.276 33.333 0.00 0.00 36.99 2.01
3455 4756 7.230747 TGGAAATTGGTTCTCTCTGAATGTAA 58.769 34.615 0.00 0.00 36.99 2.41
3456 4757 6.778821 TGGAAATTGGTTCTCTCTGAATGTA 58.221 36.000 0.00 0.00 36.99 2.29
3457 4758 5.634118 TGGAAATTGGTTCTCTCTGAATGT 58.366 37.500 0.00 0.00 36.99 2.71
3458 4759 6.770746 ATGGAAATTGGTTCTCTCTGAATG 57.229 37.500 0.00 0.00 36.99 2.67
3459 4760 7.452501 TCAAATGGAAATTGGTTCTCTCTGAAT 59.547 33.333 0.00 0.00 36.99 2.57
3460 4761 6.777091 TCAAATGGAAATTGGTTCTCTCTGAA 59.223 34.615 0.00 0.00 36.40 3.02
3461 4762 6.306199 TCAAATGGAAATTGGTTCTCTCTGA 58.694 36.000 0.00 0.00 36.40 3.27
3462 4763 6.579666 TCAAATGGAAATTGGTTCTCTCTG 57.420 37.500 0.00 0.00 36.40 3.35
3463 4764 6.550854 TGTTCAAATGGAAATTGGTTCTCTCT 59.449 34.615 0.00 0.00 37.23 3.10
3464 4765 6.748132 TGTTCAAATGGAAATTGGTTCTCTC 58.252 36.000 0.00 0.00 37.23 3.20
3465 4766 6.729690 TGTTCAAATGGAAATTGGTTCTCT 57.270 33.333 0.00 0.00 37.23 3.10
3466 4767 6.760770 TGTTGTTCAAATGGAAATTGGTTCTC 59.239 34.615 0.00 0.00 37.23 2.87
3467 4768 6.648192 TGTTGTTCAAATGGAAATTGGTTCT 58.352 32.000 0.00 0.00 37.23 3.01
3468 4769 6.917217 TGTTGTTCAAATGGAAATTGGTTC 57.083 33.333 0.00 0.00 37.23 3.62
3469 4770 6.827762 ACATGTTGTTCAAATGGAAATTGGTT 59.172 30.769 0.00 0.00 37.23 3.67
3470 4771 6.355747 ACATGTTGTTCAAATGGAAATTGGT 58.644 32.000 0.00 0.00 37.23 3.67
3471 4772 6.864360 ACATGTTGTTCAAATGGAAATTGG 57.136 33.333 0.00 0.00 37.23 3.16
3472 4773 8.815141 TCTACATGTTGTTCAAATGGAAATTG 57.185 30.769 2.30 0.00 37.23 2.32
3474 4775 9.643693 GATTCTACATGTTGTTCAAATGGAAAT 57.356 29.630 2.30 0.00 37.23 2.17
3475 4776 8.637099 TGATTCTACATGTTGTTCAAATGGAAA 58.363 29.630 2.30 0.00 37.23 3.13
3476 4777 8.175925 TGATTCTACATGTTGTTCAAATGGAA 57.824 30.769 2.30 0.00 0.00 3.53
3477 4778 7.757941 TGATTCTACATGTTGTTCAAATGGA 57.242 32.000 2.30 0.00 0.00 3.41
3478 4779 8.815141 TTTGATTCTACATGTTGTTCAAATGG 57.185 30.769 22.91 0.00 29.45 3.16
3480 4781 9.985730 ACATTTGATTCTACATGTTGTTCAAAT 57.014 25.926 26.89 26.89 40.84 2.32
3481 4782 9.462174 GACATTTGATTCTACATGTTGTTCAAA 57.538 29.630 25.75 25.75 36.42 2.69
3482 4783 8.849168 AGACATTTGATTCTACATGTTGTTCAA 58.151 29.630 2.30 12.88 0.00 2.69
3483 4784 8.394971 AGACATTTGATTCTACATGTTGTTCA 57.605 30.769 2.30 7.55 0.00 3.18
3484 4785 7.965107 GGAGACATTTGATTCTACATGTTGTTC 59.035 37.037 2.30 4.97 0.00 3.18
3485 4786 7.448161 TGGAGACATTTGATTCTACATGTTGTT 59.552 33.333 2.30 0.00 33.40 2.83
3486 4787 6.942005 TGGAGACATTTGATTCTACATGTTGT 59.058 34.615 2.30 0.00 33.40 3.32
3487 4788 7.094677 TGTGGAGACATTTGATTCTACATGTTG 60.095 37.037 2.30 1.19 46.14 3.33
3488 4789 6.942005 TGTGGAGACATTTGATTCTACATGTT 59.058 34.615 2.30 0.00 46.14 2.71
3489 4790 6.372659 GTGTGGAGACATTTGATTCTACATGT 59.627 38.462 2.69 2.69 46.14 3.21
3490 4791 6.372381 TGTGTGGAGACATTTGATTCTACATG 59.628 38.462 0.00 0.00 46.14 3.21
3491 4792 6.475504 TGTGTGGAGACATTTGATTCTACAT 58.524 36.000 7.86 0.00 46.14 2.29
3492 4793 5.863965 TGTGTGGAGACATTTGATTCTACA 58.136 37.500 0.00 0.00 46.14 2.74
3493 4794 5.163814 GCTGTGTGGAGACATTTGATTCTAC 60.164 44.000 0.00 0.00 46.14 2.59
3494 4795 4.937620 GCTGTGTGGAGACATTTGATTCTA 59.062 41.667 0.00 0.00 46.14 2.10
3495 4796 3.755378 GCTGTGTGGAGACATTTGATTCT 59.245 43.478 0.00 0.00 46.14 2.40
3496 4797 3.755378 AGCTGTGTGGAGACATTTGATTC 59.245 43.478 0.00 0.00 46.14 2.52
3497 4798 3.504906 CAGCTGTGTGGAGACATTTGATT 59.495 43.478 5.25 0.00 46.14 2.57
3498 4799 3.079578 CAGCTGTGTGGAGACATTTGAT 58.920 45.455 5.25 0.00 46.14 2.57
3499 4800 2.104622 TCAGCTGTGTGGAGACATTTGA 59.895 45.455 14.67 0.00 46.14 2.69
3500 4801 2.497138 TCAGCTGTGTGGAGACATTTG 58.503 47.619 14.67 0.00 46.14 2.32
3501 4802 2.936919 TCAGCTGTGTGGAGACATTT 57.063 45.000 14.67 0.00 46.14 2.32
3502 4803 2.936919 TTCAGCTGTGTGGAGACATT 57.063 45.000 14.67 0.00 46.14 2.71
3503 4804 3.430042 AATTCAGCTGTGTGGAGACAT 57.570 42.857 14.67 0.00 46.14 3.06
3504 4805 2.936919 AATTCAGCTGTGTGGAGACA 57.063 45.000 14.67 0.00 38.70 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.