Multiple sequence alignment - TraesCS1B01G357700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G357700 chr1B 100.000 6902 0 0 1 6902 587518958 587525859 0.000000e+00 12746.0
1 TraesCS1B01G357700 chr1B 83.009 2466 327 52 4499 6902 587026669 587029104 0.000000e+00 2148.0
2 TraesCS1B01G357700 chr1B 99.537 1080 5 0 1247 2326 655769506 655770585 0.000000e+00 1967.0
3 TraesCS1B01G357700 chr1B 84.533 375 45 5 4065 4432 587024737 587025105 6.580000e-95 359.0
4 TraesCS1B01G357700 chr6A 99.538 1083 5 0 1247 2329 68981410 68980328 0.000000e+00 1973.0
5 TraesCS1B01G357700 chr6A 99.537 1080 5 0 1247 2326 146531194 146532273 0.000000e+00 1967.0
6 TraesCS1B01G357700 chr6A 95.000 100 5 0 3103 3202 495741271 495741172 2.580000e-34 158.0
7 TraesCS1B01G357700 chr6B 99.446 1083 6 0 1247 2329 507476487 507475405 0.000000e+00 1967.0
8 TraesCS1B01G357700 chr6B 90.833 120 11 0 3081 3200 600786527 600786408 1.990000e-35 161.0
9 TraesCS1B01G357700 chr1A 99.446 1083 6 0 1247 2329 492998504 492997422 0.000000e+00 1967.0
10 TraesCS1B01G357700 chr1A 99.446 1083 5 1 1247 2329 456384460 456383379 0.000000e+00 1965.0
11 TraesCS1B01G357700 chr1A 99.355 1086 6 1 1242 2326 517045155 517046240 0.000000e+00 1965.0
12 TraesCS1B01G357700 chr1A 83.342 1837 253 35 4438 6246 532260704 532262515 0.000000e+00 1648.0
13 TraesCS1B01G357700 chr1A 87.382 951 68 22 3198 4128 532259444 532260362 0.000000e+00 1044.0
14 TraesCS1B01G357700 chr1A 83.266 1231 108 48 37 1217 532257550 532258732 0.000000e+00 1042.0
15 TraesCS1B01G357700 chr1A 87.519 657 70 5 6252 6902 532262582 532263232 0.000000e+00 749.0
16 TraesCS1B01G357700 chr1A 93.750 464 24 5 2327 2787 532258778 532259239 0.000000e+00 691.0
17 TraesCS1B01G357700 chr1A 88.475 295 26 8 4149 4442 532260350 532260637 3.960000e-92 350.0
18 TraesCS1B01G357700 chr1A 89.529 191 10 3 2883 3066 532259259 532259446 4.160000e-57 233.0
19 TraesCS1B01G357700 chr1A 93.750 96 6 0 3103 3198 355626614 355626519 2.010000e-30 145.0
20 TraesCS1B01G357700 chr1A 82.482 137 13 5 3066 3202 118295606 118295731 7.320000e-20 110.0
21 TraesCS1B01G357700 chr2B 99.355 1085 7 0 1242 2326 637454260 637455344 0.000000e+00 1965.0
22 TraesCS1B01G357700 chr3A 99.264 1087 6 2 1243 2329 11468118 11467034 0.000000e+00 1962.0
23 TraesCS1B01G357700 chr1D 84.016 976 132 17 4447 5407 433954430 433955396 0.000000e+00 917.0
24 TraesCS1B01G357700 chr1D 83.976 830 68 28 356 1143 433952560 433953366 0.000000e+00 736.0
25 TraesCS1B01G357700 chr1D 84.957 585 64 20 3855 4435 433953787 433954351 7.770000e-159 571.0
26 TraesCS1B01G357700 chr1D 78.381 976 107 42 16 931 433921182 433922113 7.880000e-149 538.0
27 TraesCS1B01G357700 chr1D 100.000 30 0 0 1 30 433921147 433921176 1.000000e-03 56.5
28 TraesCS1B01G357700 chr3D 75.520 625 132 15 6286 6900 601221653 601221040 3.150000e-73 287.0
29 TraesCS1B01G357700 chr5D 73.871 731 140 34 5553 6246 536880360 536879644 1.920000e-60 244.0
30 TraesCS1B01G357700 chr5D 90.265 113 11 0 3094 3206 487580074 487579962 1.550000e-31 148.0
31 TraesCS1B01G357700 chr4A 73.871 731 140 33 5553 6246 633069037 633069753 1.920000e-60 244.0
32 TraesCS1B01G357700 chr4A 91.045 134 12 0 3069 3202 703414708 703414575 1.530000e-41 182.0
33 TraesCS1B01G357700 chr4A 88.276 145 8 2 3064 3200 670826860 670826717 1.540000e-36 165.0
34 TraesCS1B01G357700 chr3B 76.382 398 79 11 6506 6900 808595798 808595413 4.220000e-47 200.0
35 TraesCS1B01G357700 chr4D 93.103 116 8 0 3081 3196 46179615 46179730 3.310000e-38 171.0
36 TraesCS1B01G357700 chr6D 89.051 137 12 2 3069 3205 53142027 53142160 4.280000e-37 167.0
37 TraesCS1B01G357700 chr2D 88.276 145 9 1 3066 3202 626411431 626411575 4.280000e-37 167.0
38 TraesCS1B01G357700 chr7B 88.235 51 6 0 6685 6735 715252092 715252042 2.080000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G357700 chr1B 587518958 587525859 6901 False 12746.000000 12746 100.000000 1 6902 1 chr1B.!!$F1 6901
1 TraesCS1B01G357700 chr1B 655769506 655770585 1079 False 1967.000000 1967 99.537000 1247 2326 1 chr1B.!!$F2 1079
2 TraesCS1B01G357700 chr1B 587024737 587029104 4367 False 1253.500000 2148 83.771000 4065 6902 2 chr1B.!!$F3 2837
3 TraesCS1B01G357700 chr6A 68980328 68981410 1082 True 1973.000000 1973 99.538000 1247 2329 1 chr6A.!!$R1 1082
4 TraesCS1B01G357700 chr6A 146531194 146532273 1079 False 1967.000000 1967 99.537000 1247 2326 1 chr6A.!!$F1 1079
5 TraesCS1B01G357700 chr6B 507475405 507476487 1082 True 1967.000000 1967 99.446000 1247 2329 1 chr6B.!!$R1 1082
6 TraesCS1B01G357700 chr1A 492997422 492998504 1082 True 1967.000000 1967 99.446000 1247 2329 1 chr1A.!!$R3 1082
7 TraesCS1B01G357700 chr1A 456383379 456384460 1081 True 1965.000000 1965 99.446000 1247 2329 1 chr1A.!!$R2 1082
8 TraesCS1B01G357700 chr1A 517045155 517046240 1085 False 1965.000000 1965 99.355000 1242 2326 1 chr1A.!!$F2 1084
9 TraesCS1B01G357700 chr1A 532257550 532263232 5682 False 822.428571 1648 87.609000 37 6902 7 chr1A.!!$F3 6865
10 TraesCS1B01G357700 chr2B 637454260 637455344 1084 False 1965.000000 1965 99.355000 1242 2326 1 chr2B.!!$F1 1084
11 TraesCS1B01G357700 chr3A 11467034 11468118 1084 True 1962.000000 1962 99.264000 1243 2329 1 chr3A.!!$R1 1086
12 TraesCS1B01G357700 chr1D 433952560 433955396 2836 False 741.333333 917 84.316333 356 5407 3 chr1D.!!$F2 5051
13 TraesCS1B01G357700 chr1D 433921147 433922113 966 False 297.250000 538 89.190500 1 931 2 chr1D.!!$F1 930
14 TraesCS1B01G357700 chr3D 601221040 601221653 613 True 287.000000 287 75.520000 6286 6900 1 chr3D.!!$R1 614
15 TraesCS1B01G357700 chr5D 536879644 536880360 716 True 244.000000 244 73.871000 5553 6246 1 chr5D.!!$R2 693
16 TraesCS1B01G357700 chr4A 633069037 633069753 716 False 244.000000 244 73.871000 5553 6246 1 chr4A.!!$F1 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 617 0.316278 CGTCGCCAGATCTACACTCG 60.316 60.0 0.00 0.00 0.00 4.18 F
1138 1286 0.893727 CAGCGGGGCCTTAGTGTTTT 60.894 55.0 0.84 0.00 0.00 2.43 F
2322 2497 0.482446 TGTGTTTCTCCAAGGCCCAT 59.518 50.0 0.00 0.00 0.00 4.00 F
3087 3272 0.032952 CACCGTTCGGTTTCTCTCCA 59.967 55.0 14.42 0.00 36.17 3.86 F
3088 3273 0.033090 ACCGTTCGGTTTCTCTCCAC 59.967 55.0 11.27 0.00 34.35 4.02 F
3094 3279 0.038159 CGGTTTCTCTCCACTTCGCT 60.038 55.0 0.00 0.00 0.00 4.93 F
3432 3618 0.039618 ACCAGGCATAAACCCCTGTG 59.960 55.0 6.00 1.03 45.68 3.66 F
4241 4467 0.110295 TGTTGATGACAGGTGGTGGG 59.890 55.0 0.00 0.00 33.40 4.61 F
4282 4508 0.464373 CGTATGCCCTGCTCATTGGT 60.464 55.0 0.00 0.00 0.00 3.67 F
4752 6491 0.799917 CGATGTGGCGTCTGAGACAG 60.800 60.0 13.67 6.73 32.09 3.51 F
5332 7073 0.984230 AGGCATTCGTTTGGAGGAGA 59.016 50.0 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2322 2497 2.183478 ATTCACATTGAGGCACGTGA 57.817 45.000 22.23 0.00 36.63 4.35 R
3075 3260 0.038159 AGCGAAGTGGAGAGAAACCG 60.038 55.000 0.00 0.00 0.00 4.44 R
3848 4053 0.037877 AGAGCAGCCACATCAAGCTT 59.962 50.000 0.00 0.00 37.18 3.74 R
4983 6723 0.038526 TTCTTCCTCCAGCGAACGAC 60.039 55.000 0.00 0.00 0.00 4.34 R
5011 6751 2.105306 CCATGAGGTCCACAGCATATGA 59.895 50.000 6.97 0.00 0.00 2.15 R
5042 6782 3.386726 CCCGGAAACATAGTCATCAGGTA 59.613 47.826 0.73 0.00 0.00 3.08 R
5412 7153 0.798776 CGAATGTCTCTTGTGCCCAC 59.201 55.000 0.00 0.00 0.00 4.61 R
5456 7197 0.107312 ATCTGGTGACTGCAGATGGC 60.107 55.000 23.35 7.19 45.13 4.40 R
5497 7238 0.179089 CTGTCCCCTCGCTCTTCATG 60.179 60.000 0.00 0.00 0.00 3.07 R
5723 7494 0.530650 AGCCACGAGCCACATAATCG 60.531 55.000 0.00 0.00 45.47 3.34 R
6379 8240 1.343465 CAGTTACTGGTTCCGTGGACT 59.657 52.381 4.14 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 102 6.163159 TCCATGAACATTTTTAAAATGCGC 57.837 33.333 24.90 18.40 0.00 6.09
231 256 2.432510 ACAAAAACCGGCTGAAATTCCA 59.567 40.909 0.00 0.00 0.00 3.53
242 267 5.648572 GGCTGAAATTCCAGATCAGAAAAG 58.351 41.667 8.03 0.00 42.48 2.27
243 268 5.100943 GCTGAAATTCCAGATCAGAAAAGC 58.899 41.667 8.03 3.46 42.48 3.51
252 279 5.646793 TCCAGATCAGAAAAGCAAATCTCAG 59.353 40.000 0.00 0.00 0.00 3.35
266 294 5.374921 CAAATCTCAGACAATAGCATCCCT 58.625 41.667 0.00 0.00 0.00 4.20
318 364 1.206831 GGTCGCCTGCGTTTCTTTC 59.793 57.895 11.68 0.00 40.74 2.62
411 477 1.153429 GAGGTGACGAAATCCCCCG 60.153 63.158 0.00 0.00 0.00 5.73
412 478 1.896122 GAGGTGACGAAATCCCCCGT 61.896 60.000 0.00 0.00 42.17 5.28
413 479 1.743995 GGTGACGAAATCCCCCGTG 60.744 63.158 0.00 0.00 39.30 4.94
458 538 2.038659 CTCCTAGGCTTTCTCCTCCAG 58.961 57.143 2.96 0.00 37.66 3.86
488 573 1.477558 GCTGATCCCCACCATCGAATT 60.478 52.381 0.00 0.00 0.00 2.17
489 574 2.498167 CTGATCCCCACCATCGAATTC 58.502 52.381 0.00 0.00 0.00 2.17
490 575 1.202639 TGATCCCCACCATCGAATTCG 60.203 52.381 21.78 21.78 41.45 3.34
504 589 0.631212 AATTCGAATCCAAGGCCCCT 59.369 50.000 11.83 0.00 0.00 4.79
532 617 0.316278 CGTCGCCAGATCTACACTCG 60.316 60.000 0.00 0.00 0.00 4.18
675 765 1.333584 CGCTCGCGTATCTGCAGATC 61.334 60.000 31.92 20.96 36.05 2.75
699 807 1.287425 CGTTCTTTACGGCCCTCATC 58.713 55.000 0.00 0.00 46.42 2.92
711 819 1.229359 CCTCATCTTGGGCTGGCAT 59.771 57.895 2.88 0.00 0.00 4.40
721 829 2.278596 GCTGGCATGCGAGCAATG 60.279 61.111 39.41 14.65 45.19 2.82
722 830 3.060020 GCTGGCATGCGAGCAATGT 62.060 57.895 39.41 0.00 45.19 2.71
729 837 1.468127 CATGCGAGCAATGTGGTACAA 59.532 47.619 0.57 0.00 44.16 2.41
785 895 3.885901 TGCTATGTTTTATTGCGGGCATA 59.114 39.130 0.00 0.00 0.00 3.14
828 945 3.181397 CGATTGGTTATTTGGCTTGCTG 58.819 45.455 0.00 0.00 0.00 4.41
872 993 3.030291 TGGTTTGTGCAGGAGTGATTTT 58.970 40.909 0.00 0.00 0.00 1.82
873 994 3.181477 TGGTTTGTGCAGGAGTGATTTTG 60.181 43.478 0.00 0.00 0.00 2.44
874 995 3.383761 GTTTGTGCAGGAGTGATTTTGG 58.616 45.455 0.00 0.00 0.00 3.28
877 998 3.411446 TGTGCAGGAGTGATTTTGGTAG 58.589 45.455 0.00 0.00 0.00 3.18
879 1000 1.745653 GCAGGAGTGATTTTGGTAGGC 59.254 52.381 0.00 0.00 0.00 3.93
887 1008 4.765339 AGTGATTTTGGTAGGCTGGTTTAC 59.235 41.667 0.00 0.00 0.00 2.01
888 1009 4.765339 GTGATTTTGGTAGGCTGGTTTACT 59.235 41.667 0.00 0.00 0.00 2.24
972 1094 8.791327 TGATGAACAGATAATGAAAGTAAGCA 57.209 30.769 0.00 0.00 0.00 3.91
973 1100 8.886719 TGATGAACAGATAATGAAAGTAAGCAG 58.113 33.333 0.00 0.00 0.00 4.24
1119 1267 3.995705 TGTATATATTTACGCGGTTGCCC 59.004 43.478 12.47 0.00 38.08 5.36
1138 1286 0.893727 CAGCGGGGCCTTAGTGTTTT 60.894 55.000 0.84 0.00 0.00 2.43
1143 1291 3.151554 CGGGGCCTTAGTGTTTTAACTT 58.848 45.455 0.84 0.00 0.00 2.66
1145 1293 4.320714 CGGGGCCTTAGTGTTTTAACTTTC 60.321 45.833 0.84 0.00 0.00 2.62
1146 1294 4.021719 GGGGCCTTAGTGTTTTAACTTTCC 60.022 45.833 0.84 0.00 0.00 3.13
1148 1296 5.508489 GGGCCTTAGTGTTTTAACTTTCCAC 60.508 44.000 0.84 0.00 0.00 4.02
1150 1298 6.183360 GGCCTTAGTGTTTTAACTTTCCACTT 60.183 38.462 0.00 0.00 37.53 3.16
1186 1334 1.218316 GGACCGGAGTTGAGCGAAT 59.782 57.895 9.46 0.00 0.00 3.34
1191 1339 1.404986 CCGGAGTTGAGCGAATTGGTA 60.405 52.381 0.00 0.00 0.00 3.25
1192 1340 2.343101 CGGAGTTGAGCGAATTGGTAA 58.657 47.619 0.00 0.00 0.00 2.85
1193 1341 2.739913 CGGAGTTGAGCGAATTGGTAAA 59.260 45.455 0.00 0.00 0.00 2.01
1194 1342 3.374058 CGGAGTTGAGCGAATTGGTAAAT 59.626 43.478 0.00 0.00 0.00 1.40
1195 1343 4.569162 CGGAGTTGAGCGAATTGGTAAATA 59.431 41.667 0.00 0.00 0.00 1.40
1222 1396 6.963083 ACCTTAACGAGATATACTCAGCTT 57.037 37.500 0.00 0.00 45.14 3.74
1225 1399 6.858993 CCTTAACGAGATATACTCAGCTTGAC 59.141 42.308 0.00 0.00 45.14 3.18
1233 1407 8.348285 AGATATACTCAGCTTGACTCCTTATC 57.652 38.462 0.00 0.00 0.00 1.75
1235 1409 4.464069 ACTCAGCTTGACTCCTTATCAC 57.536 45.455 0.00 0.00 0.00 3.06
1236 1410 3.119316 ACTCAGCTTGACTCCTTATCACG 60.119 47.826 0.00 0.00 0.00 4.35
1237 1411 2.826128 TCAGCTTGACTCCTTATCACGT 59.174 45.455 0.00 0.00 0.00 4.49
1238 1412 2.926200 CAGCTTGACTCCTTATCACGTG 59.074 50.000 9.94 9.94 0.00 4.49
1239 1413 1.661112 GCTTGACTCCTTATCACGTGC 59.339 52.381 11.67 0.00 0.00 5.34
1240 1414 2.271800 CTTGACTCCTTATCACGTGCC 58.728 52.381 11.67 0.00 0.00 5.01
1241 1415 1.557099 TGACTCCTTATCACGTGCCT 58.443 50.000 11.67 2.95 0.00 4.75
1242 1416 1.476891 TGACTCCTTATCACGTGCCTC 59.523 52.381 11.67 0.00 0.00 4.70
1243 1417 1.476891 GACTCCTTATCACGTGCCTCA 59.523 52.381 11.67 0.00 0.00 3.86
1244 1418 1.899814 ACTCCTTATCACGTGCCTCAA 59.100 47.619 11.67 0.86 0.00 3.02
1245 1419 2.501723 ACTCCTTATCACGTGCCTCAAT 59.498 45.455 11.67 0.77 0.00 2.57
1553 1727 3.013921 GCCCAAACCATCTCAAACGATA 58.986 45.455 0.00 0.00 0.00 2.92
2322 2497 0.482446 TGTGTTTCTCCAAGGCCCAT 59.518 50.000 0.00 0.00 0.00 4.00
2393 2568 8.660295 TGAAAACTAACTACTTCCTCTATCCA 57.340 34.615 0.00 0.00 0.00 3.41
2433 2608 7.936301 CCCCCTTTGAATTTTGAATTCACTTTA 59.064 33.333 7.89 0.00 37.71 1.85
2500 2675 3.779444 TGCAGAGAGAAGAGGTTTAGGA 58.221 45.455 0.00 0.00 0.00 2.94
2530 2705 2.421314 CAGCCACACTCGACACCA 59.579 61.111 0.00 0.00 0.00 4.17
2542 2717 3.007506 ACTCGACACCATTGGATGTAACA 59.992 43.478 10.37 0.00 0.00 2.41
2558 2733 4.503910 TGTAACACTGCTGACATATGGAC 58.496 43.478 7.80 1.54 0.00 4.02
2606 2781 1.710816 ACTAGCTCCATCAGTAGGCC 58.289 55.000 0.00 0.00 0.00 5.19
2620 2795 1.071385 GTAGGCCTGCACATGCTCTAT 59.929 52.381 17.99 0.00 42.66 1.98
2622 2797 0.666913 GGCCTGCACATGCTCTATTG 59.333 55.000 5.31 0.00 42.66 1.90
2630 2806 4.764308 TGCACATGCTCTATTGTTTAACCA 59.236 37.500 5.31 0.00 42.66 3.67
2645 2821 4.818863 CCATGATGGGCGGGCACA 62.819 66.667 2.79 0.00 32.67 4.57
2665 2841 1.202582 ACGGCTCTGTACTGTAGCAAG 59.797 52.381 18.53 15.21 38.01 4.01
2678 2855 1.492133 TAGCAAGTGAGCCCAAGCCT 61.492 55.000 0.00 0.00 41.25 4.58
2679 2856 2.633509 GCAAGTGAGCCCAAGCCTG 61.634 63.158 0.00 0.00 41.25 4.85
2718 2896 4.495184 CGGTATTTTTATGACCTTGTCGGC 60.495 45.833 0.00 0.00 34.95 5.54
2769 2947 5.295540 GGTGTTATTCTCCTGAATGAGCTTC 59.704 44.000 0.00 0.00 42.34 3.86
2780 2958 4.115516 TGAATGAGCTTCTGAGTATTCGC 58.884 43.478 0.00 0.00 34.75 4.70
2787 2965 1.645034 TCTGAGTATTCGCTTGCTGC 58.355 50.000 0.00 0.00 38.57 5.25
2789 2967 1.938577 CTGAGTATTCGCTTGCTGCAT 59.061 47.619 1.84 0.00 43.06 3.96
2790 2968 2.353889 CTGAGTATTCGCTTGCTGCATT 59.646 45.455 1.84 0.00 43.06 3.56
2792 2970 4.129380 TGAGTATTCGCTTGCTGCATTAT 58.871 39.130 1.84 0.00 43.06 1.28
2793 2971 4.576053 TGAGTATTCGCTTGCTGCATTATT 59.424 37.500 1.84 0.00 43.06 1.40
2795 2973 6.427853 TGAGTATTCGCTTGCTGCATTATTAT 59.572 34.615 1.84 0.00 43.06 1.28
2796 2974 7.041167 TGAGTATTCGCTTGCTGCATTATTATT 60.041 33.333 1.84 0.00 43.06 1.40
2798 2976 8.137437 AGTATTCGCTTGCTGCATTATTATTTT 58.863 29.630 1.84 0.00 43.06 1.82
2799 2977 6.810888 TTCGCTTGCTGCATTATTATTTTC 57.189 33.333 1.84 0.00 43.06 2.29
2800 2978 5.889219 TCGCTTGCTGCATTATTATTTTCA 58.111 33.333 1.84 0.00 43.06 2.69
2801 2979 6.506147 TCGCTTGCTGCATTATTATTTTCAT 58.494 32.000 1.84 0.00 43.06 2.57
2802 2980 6.418523 TCGCTTGCTGCATTATTATTTTCATG 59.581 34.615 1.84 0.00 43.06 3.07
2803 2981 6.199531 CGCTTGCTGCATTATTATTTTCATGT 59.800 34.615 1.84 0.00 43.06 3.21
2804 2982 7.342194 GCTTGCTGCATTATTATTTTCATGTG 58.658 34.615 1.84 0.00 42.31 3.21
2805 2983 7.223193 GCTTGCTGCATTATTATTTTCATGTGA 59.777 33.333 1.84 0.00 42.31 3.58
2806 2984 8.637281 TTGCTGCATTATTATTTTCATGTGAG 57.363 30.769 1.84 0.00 0.00 3.51
2807 2985 7.204604 TGCTGCATTATTATTTTCATGTGAGG 58.795 34.615 0.00 0.00 0.00 3.86
2808 2986 7.068470 TGCTGCATTATTATTTTCATGTGAGGA 59.932 33.333 0.00 0.00 0.00 3.71
2809 2987 7.922278 GCTGCATTATTATTTTCATGTGAGGAA 59.078 33.333 0.00 0.00 0.00 3.36
2810 2988 9.806203 CTGCATTATTATTTTCATGTGAGGAAA 57.194 29.630 0.00 0.00 32.74 3.13
2844 3022 8.988064 TTTTATTGCTAACAAAGTTGTGTTCA 57.012 26.923 0.00 0.00 40.85 3.18
2845 3023 9.593134 TTTTATTGCTAACAAAGTTGTGTTCAT 57.407 25.926 0.00 0.00 40.85 2.57
2846 3024 8.572828 TTATTGCTAACAAAGTTGTGTTCATG 57.427 30.769 0.00 0.00 40.85 3.07
2847 3025 5.574891 TGCTAACAAAGTTGTGTTCATGT 57.425 34.783 0.00 0.00 40.85 3.21
2848 3026 6.685527 TGCTAACAAAGTTGTGTTCATGTA 57.314 33.333 0.00 0.00 40.85 2.29
2849 3027 7.089770 TGCTAACAAAGTTGTGTTCATGTAA 57.910 32.000 0.00 0.00 40.85 2.41
2850 3028 7.539436 TGCTAACAAAGTTGTGTTCATGTAAA 58.461 30.769 0.00 0.00 40.85 2.01
2851 3029 8.029522 TGCTAACAAAGTTGTGTTCATGTAAAA 58.970 29.630 0.00 0.00 40.85 1.52
2852 3030 8.865001 GCTAACAAAGTTGTGTTCATGTAAAAA 58.135 29.630 0.00 0.00 40.85 1.94
2854 3032 8.594881 AACAAAGTTGTGTTCATGTAAAAACA 57.405 26.923 0.00 0.00 41.31 2.83
2855 3033 8.238481 ACAAAGTTGTGTTCATGTAAAAACAG 57.762 30.769 0.00 0.00 40.49 3.16
2856 3034 8.085296 ACAAAGTTGTGTTCATGTAAAAACAGA 58.915 29.630 0.00 0.00 40.49 3.41
2857 3035 9.086336 CAAAGTTGTGTTCATGTAAAAACAGAT 57.914 29.630 0.00 0.00 36.14 2.90
2858 3036 8.856490 AAGTTGTGTTCATGTAAAAACAGATC 57.144 30.769 0.00 0.00 36.14 2.75
2859 3037 8.225603 AGTTGTGTTCATGTAAAAACAGATCT 57.774 30.769 0.00 0.00 36.14 2.75
2860 3038 8.131100 AGTTGTGTTCATGTAAAAACAGATCTG 58.869 33.333 21.37 21.37 36.14 2.90
2906 3084 8.715191 AGAACAGCATCTTATCTAGTTTGAAG 57.285 34.615 0.00 0.00 0.00 3.02
2908 3086 9.155975 GAACAGCATCTTATCTAGTTTGAAGAA 57.844 33.333 0.00 0.00 32.00 2.52
2948 3126 7.922811 GGCAGATATCCAGTAAAAATCTTTTGG 59.077 37.037 0.00 0.00 0.00 3.28
2973 3151 6.438763 GGGAACTTCAAGACATAACAACTTG 58.561 40.000 0.00 0.00 41.27 3.16
3005 3190 1.667724 CTGGACATTTCCGCTTGCTAG 59.332 52.381 0.00 0.00 46.37 3.42
3041 3226 9.515226 TTTCTATCAGTTAGTTTTTATGTGGCT 57.485 29.630 0.00 0.00 0.00 4.75
3042 3227 9.515226 TTCTATCAGTTAGTTTTTATGTGGCTT 57.485 29.630 0.00 0.00 0.00 4.35
3043 3228 9.515226 TCTATCAGTTAGTTTTTATGTGGCTTT 57.485 29.630 0.00 0.00 0.00 3.51
3071 3256 9.923143 AAATATTTTTCTTACAGTTTAGCCACC 57.077 29.630 0.00 0.00 0.00 4.61
3072 3257 5.427036 TTTTTCTTACAGTTTAGCCACCG 57.573 39.130 0.00 0.00 0.00 4.94
3073 3258 3.756933 TTCTTACAGTTTAGCCACCGT 57.243 42.857 0.00 0.00 0.00 4.83
3074 3259 3.756933 TCTTACAGTTTAGCCACCGTT 57.243 42.857 0.00 0.00 0.00 4.44
3075 3260 3.656559 TCTTACAGTTTAGCCACCGTTC 58.343 45.455 0.00 0.00 0.00 3.95
3076 3261 2.068837 TACAGTTTAGCCACCGTTCG 57.931 50.000 0.00 0.00 0.00 3.95
3077 3262 0.601841 ACAGTTTAGCCACCGTTCGG 60.602 55.000 9.81 9.81 0.00 4.30
3078 3263 0.601841 CAGTTTAGCCACCGTTCGGT 60.602 55.000 11.27 11.27 39.42 4.69
3079 3264 0.107268 AGTTTAGCCACCGTTCGGTT 59.893 50.000 14.42 3.33 36.17 4.44
3080 3265 0.946528 GTTTAGCCACCGTTCGGTTT 59.053 50.000 14.42 6.16 36.17 3.27
3081 3266 1.069703 GTTTAGCCACCGTTCGGTTTC 60.070 52.381 14.42 8.99 36.17 2.78
3082 3267 0.393820 TTAGCCACCGTTCGGTTTCT 59.606 50.000 14.42 15.12 36.17 2.52
3083 3268 0.037975 TAGCCACCGTTCGGTTTCTC 60.038 55.000 14.42 4.36 36.17 2.87
3084 3269 1.301479 GCCACCGTTCGGTTTCTCT 60.301 57.895 14.42 0.00 36.17 3.10
3085 3270 1.289800 GCCACCGTTCGGTTTCTCTC 61.290 60.000 14.42 0.00 36.17 3.20
3086 3271 0.669625 CCACCGTTCGGTTTCTCTCC 60.670 60.000 14.42 0.00 36.17 3.71
3087 3272 0.032952 CACCGTTCGGTTTCTCTCCA 59.967 55.000 14.42 0.00 36.17 3.86
3088 3273 0.033090 ACCGTTCGGTTTCTCTCCAC 59.967 55.000 11.27 0.00 34.35 4.02
3089 3274 0.317479 CCGTTCGGTTTCTCTCCACT 59.683 55.000 2.82 0.00 0.00 4.00
3090 3275 1.270147 CCGTTCGGTTTCTCTCCACTT 60.270 52.381 2.82 0.00 0.00 3.16
3091 3276 2.059541 CGTTCGGTTTCTCTCCACTTC 58.940 52.381 0.00 0.00 0.00 3.01
3092 3277 2.059541 GTTCGGTTTCTCTCCACTTCG 58.940 52.381 0.00 0.00 0.00 3.79
3093 3278 0.038526 TCGGTTTCTCTCCACTTCGC 60.039 55.000 0.00 0.00 0.00 4.70
3094 3279 0.038159 CGGTTTCTCTCCACTTCGCT 60.038 55.000 0.00 0.00 0.00 4.93
3095 3280 1.715993 GGTTTCTCTCCACTTCGCTC 58.284 55.000 0.00 0.00 0.00 5.03
3096 3281 1.000955 GGTTTCTCTCCACTTCGCTCA 59.999 52.381 0.00 0.00 0.00 4.26
3097 3282 2.548067 GGTTTCTCTCCACTTCGCTCAA 60.548 50.000 0.00 0.00 0.00 3.02
3098 3283 2.440539 TTCTCTCCACTTCGCTCAAC 57.559 50.000 0.00 0.00 0.00 3.18
3099 3284 1.621992 TCTCTCCACTTCGCTCAACT 58.378 50.000 0.00 0.00 0.00 3.16
3100 3285 1.542030 TCTCTCCACTTCGCTCAACTC 59.458 52.381 0.00 0.00 0.00 3.01
3101 3286 0.603569 TCTCCACTTCGCTCAACTCC 59.396 55.000 0.00 0.00 0.00 3.85
3102 3287 0.734253 CTCCACTTCGCTCAACTCCG 60.734 60.000 0.00 0.00 0.00 4.63
3103 3288 2.383527 CCACTTCGCTCAACTCCGC 61.384 63.158 0.00 0.00 0.00 5.54
3125 3310 3.882025 CTCGGTTTGAGCTGCTCC 58.118 61.111 25.61 10.90 38.03 4.70
3126 3311 2.048222 TCGGTTTGAGCTGCTCCG 60.048 61.111 25.61 21.69 42.12 4.63
3127 3312 2.357517 CGGTTTGAGCTGCTCCGT 60.358 61.111 25.61 0.00 36.99 4.69
3128 3313 1.080093 CGGTTTGAGCTGCTCCGTA 60.080 57.895 25.61 9.39 36.99 4.02
3129 3314 0.669318 CGGTTTGAGCTGCTCCGTAA 60.669 55.000 25.61 14.50 36.99 3.18
3130 3315 1.519408 GGTTTGAGCTGCTCCGTAAA 58.481 50.000 25.61 16.63 0.00 2.01
3131 3316 1.877443 GGTTTGAGCTGCTCCGTAAAA 59.123 47.619 25.61 16.29 0.00 1.52
3132 3317 2.292292 GGTTTGAGCTGCTCCGTAAAAA 59.708 45.455 25.61 15.95 0.00 1.94
3133 3318 3.555518 GTTTGAGCTGCTCCGTAAAAAG 58.444 45.455 25.61 0.00 0.00 2.27
3134 3319 1.156736 TGAGCTGCTCCGTAAAAAGC 58.843 50.000 25.61 0.00 39.02 3.51
3135 3320 1.270839 TGAGCTGCTCCGTAAAAAGCT 60.271 47.619 25.61 0.00 46.53 3.74
3136 3321 1.129437 GAGCTGCTCCGTAAAAAGCTG 59.871 52.381 18.80 0.00 44.00 4.24
3137 3322 3.683581 CTGCTCCGTAAAAAGCTGC 57.316 52.632 0.00 0.00 39.31 5.25
3138 3323 1.160137 CTGCTCCGTAAAAAGCTGCT 58.840 50.000 0.00 0.00 39.31 4.24
3139 3324 0.874390 TGCTCCGTAAAAAGCTGCTG 59.126 50.000 1.35 0.00 39.31 4.41
3140 3325 0.455126 GCTCCGTAAAAAGCTGCTGC 60.455 55.000 1.35 7.62 35.60 5.25
3141 3326 0.874390 CTCCGTAAAAAGCTGCTGCA 59.126 50.000 18.42 0.88 42.74 4.41
3142 3327 0.874390 TCCGTAAAAAGCTGCTGCAG 59.126 50.000 24.80 24.80 42.74 4.41
3151 3336 3.800863 CTGCTGCAGCTTGCTCCG 61.801 66.667 36.61 13.85 45.31 4.63
3154 3339 3.497932 CTGCAGCTTGCTCCGCTC 61.498 66.667 0.00 0.00 45.31 5.03
3156 3341 4.774503 GCAGCTTGCTCCGCTCCT 62.775 66.667 0.00 0.00 40.96 3.69
3157 3342 2.818714 CAGCTTGCTCCGCTCCTG 60.819 66.667 0.00 0.00 35.07 3.86
3158 3343 4.093291 AGCTTGCTCCGCTCCTGG 62.093 66.667 0.00 0.00 30.49 4.45
3159 3344 4.087892 GCTTGCTCCGCTCCTGGA 62.088 66.667 0.00 0.00 36.37 3.86
3170 3355 1.510383 CTCCTGGAGCTGAGTCACG 59.490 63.158 11.42 0.00 0.00 4.35
3171 3356 1.943116 CTCCTGGAGCTGAGTCACGG 61.943 65.000 11.42 0.00 0.00 4.94
3172 3357 2.575993 CTGGAGCTGAGTCACGGG 59.424 66.667 0.00 0.00 0.00 5.28
3173 3358 1.979155 CTGGAGCTGAGTCACGGGA 60.979 63.158 0.00 0.00 0.00 5.14
3174 3359 1.943116 CTGGAGCTGAGTCACGGGAG 61.943 65.000 0.00 0.00 0.00 4.30
3175 3360 2.183046 GAGCTGAGTCACGGGAGC 59.817 66.667 0.00 0.00 0.00 4.70
3176 3361 3.691744 GAGCTGAGTCACGGGAGCG 62.692 68.421 0.00 0.00 36.52 5.03
3177 3362 4.803426 GCTGAGTCACGGGAGCGG 62.803 72.222 0.00 0.00 0.00 5.52
3178 3363 3.062466 CTGAGTCACGGGAGCGGA 61.062 66.667 0.00 0.00 0.00 5.54
3179 3364 3.057547 CTGAGTCACGGGAGCGGAG 62.058 68.421 0.00 0.00 0.00 4.63
3180 3365 2.750637 GAGTCACGGGAGCGGAGA 60.751 66.667 0.00 0.00 0.00 3.71
3181 3366 2.752238 AGTCACGGGAGCGGAGAG 60.752 66.667 0.00 0.00 0.00 3.20
3182 3367 2.750637 GTCACGGGAGCGGAGAGA 60.751 66.667 0.00 0.00 0.00 3.10
3183 3368 2.035155 TCACGGGAGCGGAGAGAA 59.965 61.111 0.00 0.00 0.00 2.87
3184 3369 1.605451 TCACGGGAGCGGAGAGAAA 60.605 57.895 0.00 0.00 0.00 2.52
3185 3370 1.446272 CACGGGAGCGGAGAGAAAC 60.446 63.158 0.00 0.00 0.00 2.78
3186 3371 1.606889 ACGGGAGCGGAGAGAAACT 60.607 57.895 0.00 0.00 0.00 2.66
3187 3372 1.153745 CGGGAGCGGAGAGAAACTG 60.154 63.158 0.00 0.00 0.00 3.16
3188 3373 1.595993 CGGGAGCGGAGAGAAACTGA 61.596 60.000 0.00 0.00 0.00 3.41
3189 3374 0.608640 GGGAGCGGAGAGAAACTGAA 59.391 55.000 0.00 0.00 0.00 3.02
3190 3375 1.673329 GGGAGCGGAGAGAAACTGAAC 60.673 57.143 0.00 0.00 0.00 3.18
3191 3376 1.000955 GGAGCGGAGAGAAACTGAACA 59.999 52.381 0.00 0.00 0.00 3.18
3192 3377 2.333014 GAGCGGAGAGAAACTGAACAG 58.667 52.381 0.00 0.00 0.00 3.16
3193 3378 1.001406 AGCGGAGAGAAACTGAACAGG 59.999 52.381 6.76 0.00 0.00 4.00
3194 3379 1.433534 CGGAGAGAAACTGAACAGGC 58.566 55.000 6.76 0.00 0.00 4.85
3195 3380 1.814793 GGAGAGAAACTGAACAGGCC 58.185 55.000 0.00 0.00 0.00 5.19
3196 3381 1.611936 GGAGAGAAACTGAACAGGCCC 60.612 57.143 0.00 0.00 0.00 5.80
3197 3382 1.349357 GAGAGAAACTGAACAGGCCCT 59.651 52.381 0.00 0.31 0.00 5.19
3198 3383 1.777272 AGAGAAACTGAACAGGCCCTT 59.223 47.619 0.00 0.00 0.00 3.95
3199 3384 2.979678 AGAGAAACTGAACAGGCCCTTA 59.020 45.455 0.00 0.00 0.00 2.69
3212 3397 4.141620 ACAGGCCCTTAATATCACTGTCTG 60.142 45.833 0.00 0.00 32.79 3.51
3213 3398 3.142174 GGCCCTTAATATCACTGTCTGC 58.858 50.000 0.00 0.00 0.00 4.26
3226 3411 5.054477 TCACTGTCTGCCACTAACTAAAAC 58.946 41.667 0.00 0.00 0.00 2.43
3229 3414 6.038271 CACTGTCTGCCACTAACTAAAACTTT 59.962 38.462 0.00 0.00 0.00 2.66
3298 3483 5.392380 GCTTAACATGCAAACTGAGCAGTAT 60.392 40.000 3.21 0.00 46.36 2.12
3299 3484 6.573664 TTAACATGCAAACTGAGCAGTATT 57.426 33.333 3.21 0.00 46.36 1.89
3300 3485 4.430137 ACATGCAAACTGAGCAGTATTG 57.570 40.909 3.21 11.03 46.36 1.90
3301 3486 4.074259 ACATGCAAACTGAGCAGTATTGA 58.926 39.130 19.84 11.17 46.36 2.57
3316 3501 4.804139 CAGTATTGAAGCGACGGATAAACT 59.196 41.667 0.00 0.00 0.00 2.66
3323 3508 2.296471 AGCGACGGATAAACTCCTATGG 59.704 50.000 0.00 0.00 42.47 2.74
3345 3530 4.563993 GGTGTTACCATGCACAGTAGGTTA 60.564 45.833 0.00 0.00 38.42 2.85
3347 3532 5.646360 GTGTTACCATGCACAGTAGGTTAAT 59.354 40.000 0.00 0.00 35.62 1.40
3349 3534 7.334921 GTGTTACCATGCACAGTAGGTTAATTA 59.665 37.037 0.00 0.00 35.62 1.40
3388 3574 1.985622 ATCTCCCTTGATGGTTCCCA 58.014 50.000 0.00 0.00 38.19 4.37
3398 3584 2.359011 GGTTCCCACCATCCCCAC 59.641 66.667 0.00 0.00 43.61 4.61
3399 3585 2.238701 GGTTCCCACCATCCCCACT 61.239 63.158 0.00 0.00 43.61 4.00
3400 3586 1.000896 GTTCCCACCATCCCCACTG 60.001 63.158 0.00 0.00 0.00 3.66
3410 3596 3.785887 ACCATCCCCACTGTACACAATAT 59.214 43.478 0.00 0.00 0.00 1.28
3413 3599 2.573915 TCCCCACTGTACACAATATGCA 59.426 45.455 0.00 0.00 0.00 3.96
3432 3618 0.039618 ACCAGGCATAAACCCCTGTG 59.960 55.000 6.00 1.03 45.68 3.66
3439 3625 2.228822 GCATAAACCCCTGTGAAGTGTG 59.771 50.000 0.00 0.00 0.00 3.82
3440 3626 3.486383 CATAAACCCCTGTGAAGTGTGT 58.514 45.455 0.00 0.00 0.00 3.72
3441 3627 2.052782 AAACCCCTGTGAAGTGTGTC 57.947 50.000 0.00 0.00 0.00 3.67
3452 3638 2.366590 TGAAGTGTGTCAGCAGATGAGT 59.633 45.455 0.00 0.00 39.07 3.41
3462 3648 2.495270 CAGCAGATGAGTGGTAGTGAGT 59.505 50.000 0.00 0.00 0.00 3.41
3465 3651 3.674682 GCAGATGAGTGGTAGTGAGTGTC 60.675 52.174 0.00 0.00 0.00 3.67
3466 3652 3.507622 CAGATGAGTGGTAGTGAGTGTCA 59.492 47.826 0.00 0.00 0.00 3.58
3468 3654 1.613925 TGAGTGGTAGTGAGTGTCAGC 59.386 52.381 0.00 0.00 0.00 4.26
3469 3655 0.969894 AGTGGTAGTGAGTGTCAGCC 59.030 55.000 0.00 0.00 0.00 4.85
3470 3656 0.388649 GTGGTAGTGAGTGTCAGCCG 60.389 60.000 0.00 0.00 0.00 5.52
3471 3657 0.538746 TGGTAGTGAGTGTCAGCCGA 60.539 55.000 0.00 0.00 0.00 5.54
3472 3658 0.818296 GGTAGTGAGTGTCAGCCGAT 59.182 55.000 0.00 0.00 0.00 4.18
3473 3659 1.469940 GGTAGTGAGTGTCAGCCGATG 60.470 57.143 0.00 0.00 0.00 3.84
3484 3670 2.952245 GCCGATGCTGATCCATGC 59.048 61.111 0.00 0.00 33.53 4.06
3487 3673 0.873054 CCGATGCTGATCCATGCTTC 59.127 55.000 0.00 0.00 0.00 3.86
3491 3677 0.255033 TGCTGATCCATGCTTCTGCT 59.745 50.000 18.79 0.00 40.48 4.24
3494 3680 2.640184 CTGATCCATGCTTCTGCTCAA 58.360 47.619 0.00 0.00 40.48 3.02
3498 3684 3.632643 TCCATGCTTCTGCTCAACATA 57.367 42.857 0.00 0.00 40.48 2.29
3502 3688 4.579340 CCATGCTTCTGCTCAACATATCTT 59.421 41.667 0.00 0.00 40.48 2.40
3503 3689 5.761726 CCATGCTTCTGCTCAACATATCTTA 59.238 40.000 0.00 0.00 40.48 2.10
3570 3756 4.215613 GGGACTAATAAATTCGGATGGTGC 59.784 45.833 0.00 0.00 0.00 5.01
3589 3776 3.309954 GTGCGGAAGTAGCTATTTTCCTG 59.690 47.826 25.35 21.11 38.55 3.86
3621 3808 1.308998 GGGTAGGCGATGATGTTTGG 58.691 55.000 0.00 0.00 0.00 3.28
3627 3814 1.949525 GGCGATGATGTTTGGTATGCT 59.050 47.619 0.00 0.00 0.00 3.79
3628 3815 3.138304 GGCGATGATGTTTGGTATGCTA 58.862 45.455 0.00 0.00 0.00 3.49
3629 3816 3.187227 GGCGATGATGTTTGGTATGCTAG 59.813 47.826 0.00 0.00 0.00 3.42
3630 3817 3.809832 GCGATGATGTTTGGTATGCTAGT 59.190 43.478 0.00 0.00 0.00 2.57
3631 3818 4.084328 GCGATGATGTTTGGTATGCTAGTC 60.084 45.833 0.00 0.00 0.00 2.59
3632 3819 4.449068 CGATGATGTTTGGTATGCTAGTCC 59.551 45.833 0.00 0.00 0.00 3.85
3678 3866 8.504812 TGTATATTTGAATAGCTTGCTTGTCA 57.495 30.769 0.00 2.37 0.00 3.58
3726 3917 8.333186 GCTGTTGGAACTATTAAGTATTAACGG 58.667 37.037 0.00 0.00 44.35 4.44
3766 3957 4.597507 TGGTCAAGATCTAACCTTGGTCTT 59.402 41.667 21.66 0.00 40.88 3.01
3777 3968 7.398829 TCTAACCTTGGTCTTTGCACATATAA 58.601 34.615 0.00 0.00 0.00 0.98
3802 3993 3.786213 ATATTTTACCCCAAAGGCCCA 57.214 42.857 0.00 0.00 40.58 5.36
3829 4034 0.895559 AGCCACCAAGCCTTGTTAGC 60.896 55.000 3.37 2.92 0.00 3.09
3836 4041 2.163010 CCAAGCCTTGTTAGCTGATGTG 59.837 50.000 3.37 0.00 40.49 3.21
3840 4045 2.417933 GCCTTGTTAGCTGATGTGAGTG 59.582 50.000 0.00 0.00 0.00 3.51
3848 4053 2.899900 AGCTGATGTGAGTGACCTGTTA 59.100 45.455 0.00 0.00 0.00 2.41
3851 4056 3.664107 TGATGTGAGTGACCTGTTAAGC 58.336 45.455 0.00 0.00 0.00 3.09
3855 4060 3.133901 TGTGAGTGACCTGTTAAGCTTGA 59.866 43.478 9.86 0.00 0.00 3.02
3859 4064 4.067896 AGTGACCTGTTAAGCTTGATGTG 58.932 43.478 9.86 0.00 0.00 3.21
3893 4112 1.584380 CTTCCTGCTCTGCTTGGTGC 61.584 60.000 0.00 0.00 43.25 5.01
3928 4147 5.941555 TTAGATTCCTCTCCTCTTTCCAC 57.058 43.478 0.00 0.00 32.66 4.02
3929 4148 4.073425 AGATTCCTCTCCTCTTTCCACT 57.927 45.455 0.00 0.00 0.00 4.00
3930 4149 4.030216 AGATTCCTCTCCTCTTTCCACTC 58.970 47.826 0.00 0.00 0.00 3.51
3931 4150 3.551635 TTCCTCTCCTCTTTCCACTCT 57.448 47.619 0.00 0.00 0.00 3.24
3932 4151 4.676799 TTCCTCTCCTCTTTCCACTCTA 57.323 45.455 0.00 0.00 0.00 2.43
3933 4152 4.243793 TCCTCTCCTCTTTCCACTCTAG 57.756 50.000 0.00 0.00 0.00 2.43
3934 4153 3.594232 TCCTCTCCTCTTTCCACTCTAGT 59.406 47.826 0.00 0.00 0.00 2.57
4095 4314 7.915397 CCAACCTCTTCCAAAACATTTATATCG 59.085 37.037 0.00 0.00 0.00 2.92
4098 4317 8.840321 ACCTCTTCCAAAACATTTATATCGATG 58.160 33.333 8.54 0.00 0.00 3.84
4136 4356 5.905733 CGAGCATGCAGTGATATTTACAAAG 59.094 40.000 21.98 0.00 0.00 2.77
4167 4393 4.509230 ACAACATGCGCATGATAGTCTTAG 59.491 41.667 46.90 27.50 41.20 2.18
4191 4417 3.008485 GGATTGACCTCAACTCTTCAGGT 59.992 47.826 0.00 0.00 43.63 4.00
4198 4424 3.306641 CCTCAACTCTTCAGGTGGAGAAG 60.307 52.174 0.00 0.00 42.94 2.85
4206 4432 1.205655 TCAGGTGGAGAAGAGAATGCG 59.794 52.381 0.00 0.00 0.00 4.73
4234 4460 1.815003 GGGAAGCTTGTTGATGACAGG 59.185 52.381 2.10 0.00 39.94 4.00
4235 4461 2.508526 GGAAGCTTGTTGATGACAGGT 58.491 47.619 2.10 0.00 39.94 4.00
4241 4467 0.110295 TGTTGATGACAGGTGGTGGG 59.890 55.000 0.00 0.00 33.40 4.61
4250 4476 2.304761 GACAGGTGGTGGGATGAAGTAA 59.695 50.000 0.00 0.00 0.00 2.24
4253 4479 3.054434 CAGGTGGTGGGATGAAGTAATGA 60.054 47.826 0.00 0.00 0.00 2.57
4262 4488 4.646492 GGGATGAAGTAATGATTGCCAACT 59.354 41.667 0.00 0.00 0.00 3.16
4263 4489 5.221126 GGGATGAAGTAATGATTGCCAACTC 60.221 44.000 0.00 0.00 0.00 3.01
4264 4490 4.944962 TGAAGTAATGATTGCCAACTCG 57.055 40.909 0.00 0.00 0.00 4.18
4279 4505 0.833287 ACTCGTATGCCCTGCTCATT 59.167 50.000 0.00 0.00 0.00 2.57
4282 4508 0.464373 CGTATGCCCTGCTCATTGGT 60.464 55.000 0.00 0.00 0.00 3.67
4435 4661 3.067833 GACAGCTGGGTTAGTCTTGTTC 58.932 50.000 19.93 0.00 0.00 3.18
4456 4761 6.265422 TGTTCCTTCTTTTCCTCCATCTTTTC 59.735 38.462 0.00 0.00 0.00 2.29
4463 4768 4.826274 TTCCTCCATCTTTTCGTGAGAT 57.174 40.909 0.00 0.00 41.60 2.75
4465 4770 4.507710 TCCTCCATCTTTTCGTGAGATTG 58.492 43.478 0.00 0.00 41.60 2.67
4539 6269 6.071334 ACAACAGGATCTTCGATGTTCTTCTA 60.071 38.462 8.70 0.00 33.76 2.10
4563 6293 4.578105 ACTGAAAAGCTGAGCTATATTGGC 59.422 41.667 7.68 0.00 38.25 4.52
4564 6294 4.525996 TGAAAAGCTGAGCTATATTGGCA 58.474 39.130 7.68 0.00 38.25 4.92
4566 6296 5.418524 TGAAAAGCTGAGCTATATTGGCAAA 59.581 36.000 7.68 0.00 38.25 3.68
4572 6302 6.072064 AGCTGAGCTATATTGGCAAATCAATC 60.072 38.462 4.49 0.00 36.99 2.67
4574 6304 7.210718 TGAGCTATATTGGCAAATCAATCTG 57.789 36.000 3.01 0.00 38.24 2.90
4578 6308 1.941377 TTGGCAAATCAATCTGGGCT 58.059 45.000 0.00 0.00 0.00 5.19
4579 6309 1.187974 TGGCAAATCAATCTGGGCTG 58.812 50.000 0.00 0.00 0.00 4.85
4586 6316 5.876460 GCAAATCAATCTGGGCTGTTTTATT 59.124 36.000 0.00 0.00 0.00 1.40
4587 6317 7.041107 GCAAATCAATCTGGGCTGTTTTATTA 58.959 34.615 0.00 0.00 0.00 0.98
4588 6318 7.010460 GCAAATCAATCTGGGCTGTTTTATTAC 59.990 37.037 0.00 0.00 0.00 1.89
4595 6334 3.021695 GGGCTGTTTTATTACCCCTGTC 58.978 50.000 0.00 0.00 34.23 3.51
4598 6337 4.332828 GCTGTTTTATTACCCCTGTCTGT 58.667 43.478 0.00 0.00 0.00 3.41
4621 6360 3.067461 TGACAACCTTTTGCAGCGTAAAT 59.933 39.130 0.00 0.00 36.00 1.40
4624 6363 6.525653 ACAACCTTTTGCAGCGTAAATGCT 62.526 41.667 0.00 0.00 44.17 3.79
4638 6377 3.482383 TGCTGGGTGCTAGCAGAA 58.518 55.556 20.03 5.67 45.52 3.02
4639 6378 1.993653 TGCTGGGTGCTAGCAGAAT 59.006 52.632 20.03 0.00 45.52 2.40
4643 6382 4.655429 GCTGGGTGCTAGCAGAATTTGC 62.655 54.545 20.03 13.84 45.33 3.68
4657 6396 5.897133 CAGAATTTGCAACGATTGTTCAAG 58.103 37.500 0.00 0.00 35.72 3.02
4670 6409 7.960793 ACGATTGTTCAAGTAGTAGTATTTGC 58.039 34.615 7.73 0.00 0.00 3.68
4691 6430 2.173356 CCATTCTATTGTGCCCTCTGGA 59.827 50.000 0.00 0.00 0.00 3.86
4723 6462 5.144100 ACATGTTTGGGTTGTTAATCTCCA 58.856 37.500 0.00 0.00 0.00 3.86
4734 6473 2.870411 GTTAATCTCCACGGGGATTTCG 59.130 50.000 16.23 0.00 43.91 3.46
4735 6474 1.200519 AATCTCCACGGGGATTTCGA 58.799 50.000 6.99 0.00 43.91 3.71
4752 6491 0.799917 CGATGTGGCGTCTGAGACAG 60.800 60.000 13.67 6.73 32.09 3.51
4782 6521 1.103803 GGAGTGATGCTGACGGACTA 58.896 55.000 0.00 0.00 0.00 2.59
4825 6564 3.063997 GGACGTCTTGTATTCCATTGCTG 59.936 47.826 16.46 0.00 0.00 4.41
4828 6567 5.428253 ACGTCTTGTATTCCATTGCTGTAT 58.572 37.500 0.00 0.00 0.00 2.29
4852 6591 3.411446 CAGGGTGTGATTTTCTGCTACA 58.589 45.455 0.00 0.00 0.00 2.74
4917 6657 7.141363 CAGTACTTGAAAGAATGAAGTTTGGG 58.859 38.462 0.00 0.00 32.27 4.12
4962 6702 4.275689 TCGGACTACTTACTTGAAACGACA 59.724 41.667 0.00 0.00 0.00 4.35
4965 6705 6.183359 CGGACTACTTACTTGAAACGACAATC 60.183 42.308 0.00 0.00 0.00 2.67
4978 6718 3.659786 ACGACAATCGGATGTGAAAAGA 58.340 40.909 2.97 0.00 45.59 2.52
4983 6723 1.803334 TCGGATGTGAAAAGAACCCG 58.197 50.000 0.00 0.00 37.08 5.28
5028 6768 2.544694 CGTCTCATATGCTGTGGACCTC 60.545 54.545 0.00 0.00 0.00 3.85
5065 6805 2.170607 CCTGATGACTATGTTTCCGGGT 59.829 50.000 0.00 0.00 0.00 5.28
5086 6826 4.464008 GTTAAGGATCCTGGATGCATTCA 58.536 43.478 27.01 7.63 32.78 2.57
5115 6855 4.723309 GAATGAAGATATCTGCCAAGGGT 58.277 43.478 5.86 0.00 0.00 4.34
5126 6866 3.966665 TCTGCCAAGGGTTTTGAAGAAAT 59.033 39.130 0.00 0.00 0.00 2.17
5129 6869 5.852827 TGCCAAGGGTTTTGAAGAAATAAG 58.147 37.500 0.00 0.00 0.00 1.73
5164 6905 6.036517 CACTAGGAGGAAATTGAAGATGTTCG 59.963 42.308 0.00 0.00 35.17 3.95
5214 6955 4.221530 TGATCATGTCTGCATCCTCTACT 58.778 43.478 0.00 0.00 31.99 2.57
5249 6990 1.079819 TGCTGCAGACGTTAGGCTC 60.080 57.895 20.43 0.00 29.21 4.70
5250 6991 1.811679 GCTGCAGACGTTAGGCTCC 60.812 63.158 20.43 0.00 29.21 4.70
5253 6994 1.185618 TGCAGACGTTAGGCTCCAGT 61.186 55.000 0.00 0.00 29.21 4.00
5259 7000 5.061853 CAGACGTTAGGCTCCAGTAGTATA 58.938 45.833 0.00 0.00 29.21 1.47
5283 7024 2.363147 AGAGAGACGAGGGGGTGC 60.363 66.667 0.00 0.00 0.00 5.01
5332 7073 0.984230 AGGCATTCGTTTGGAGGAGA 59.016 50.000 0.00 0.00 0.00 3.71
5357 7098 3.764972 CCAACGGGGGTTGTTTACATATT 59.235 43.478 6.26 0.00 32.80 1.28
5407 7148 4.261801 CAGTTTACTCCAACCATACCAGG 58.738 47.826 0.00 0.00 0.00 4.45
5412 7153 3.375699 ACTCCAACCATACCAGGTAGAG 58.624 50.000 5.31 7.51 42.25 2.43
5430 7171 2.079925 GAGTGGGCACAAGAGACATTC 58.920 52.381 0.00 0.00 0.00 2.67
5433 7174 1.071542 TGGGCACAAGAGACATTCGAA 59.928 47.619 0.00 0.00 0.00 3.71
5434 7175 2.151202 GGGCACAAGAGACATTCGAAA 58.849 47.619 0.00 0.00 0.00 3.46
5456 7197 5.560966 AAAAATTGGTACAGTATGGCTCG 57.439 39.130 0.00 0.00 43.62 5.03
5482 7223 4.026052 TCTGCAGTCACCAGATCTTGATA 58.974 43.478 14.67 0.00 34.59 2.15
5483 7224 4.099113 TCTGCAGTCACCAGATCTTGATAG 59.901 45.833 14.67 0.00 34.59 2.08
5484 7225 3.129871 GCAGTCACCAGATCTTGATAGC 58.870 50.000 0.00 4.85 0.00 2.97
5497 7238 5.078411 TCTTGATAGCAAAGAGGACAGTC 57.922 43.478 0.00 0.00 32.73 3.51
5502 7243 3.777106 AGCAAAGAGGACAGTCATGAA 57.223 42.857 0.00 0.00 0.00 2.57
5530 7274 2.489073 GGGGACAGTGATGGTGAACTTT 60.489 50.000 0.00 0.00 0.00 2.66
5547 7291 5.766174 TGAACTTTTTAACGCCTACAAGGAT 59.234 36.000 0.00 0.00 37.67 3.24
5548 7292 6.263617 TGAACTTTTTAACGCCTACAAGGATT 59.736 34.615 0.00 0.00 37.67 3.01
5566 7310 6.686484 AGGATTTAATGGAGCAAGGTTTTT 57.314 33.333 0.00 0.00 0.00 1.94
5572 7316 7.531857 TTAATGGAGCAAGGTTTTTGTATCA 57.468 32.000 0.00 0.00 0.00 2.15
5601 7345 3.696051 AGCTCGCAACCAATAATGACAAT 59.304 39.130 0.00 0.00 0.00 2.71
5687 7431 5.072329 ACCTACTCCACCAAATAGATCATGG 59.928 44.000 0.00 0.27 40.16 3.66
5698 7469 1.328279 AGATCATGGTGCATGGCATG 58.672 50.000 22.99 22.99 41.91 4.06
5723 7494 5.008118 GCATAGTAGAGGGTTCAATGAAAGC 59.992 44.000 0.00 0.00 0.00 3.51
5730 7501 5.297776 AGAGGGTTCAATGAAAGCGATTATG 59.702 40.000 0.00 0.00 0.00 1.90
5731 7502 4.949856 AGGGTTCAATGAAAGCGATTATGT 59.050 37.500 0.00 0.00 0.00 2.29
5823 7597 2.092538 CAGCACCATGGAGAGGATTCTT 60.093 50.000 21.47 0.00 32.53 2.52
5826 7600 3.539604 CACCATGGAGAGGATTCTTGAC 58.460 50.000 21.47 0.00 32.53 3.18
5854 7628 0.179145 ATGCGATGAAAAGCTGCAGC 60.179 50.000 31.53 31.53 39.17 5.25
5861 7635 1.409790 TGAAAAGCTGCAGCAACATGT 59.590 42.857 38.24 17.76 45.16 3.21
5930 7710 7.274447 TGGAGAATGCAAACAGAGAAAAATTT 58.726 30.769 0.00 0.00 28.48 1.82
5971 7754 7.935755 AGACATTATGACTGATGATAACAAGGG 59.064 37.037 0.00 0.00 0.00 3.95
5978 7761 3.620488 TGATGATAACAAGGGCAAGGAC 58.380 45.455 0.00 0.00 0.00 3.85
5986 7769 1.407656 AAGGGCAAGGACGACAGACA 61.408 55.000 0.00 0.00 0.00 3.41
5997 7780 1.002868 GACAGACAGGTGGCAGCAT 60.003 57.895 20.04 6.30 0.00 3.79
6012 7795 0.689055 AGCATCTCAAGCACTGGTGA 59.311 50.000 4.79 0.00 0.00 4.02
6020 7803 2.899900 TCAAGCACTGGTGACTCTATGT 59.100 45.455 4.79 0.00 0.00 2.29
6096 7879 9.889128 TTGTTAATAATCTCACTGTGATGATCA 57.111 29.630 11.45 0.00 0.00 2.92
6109 7892 5.856126 GTGATGATCACTGAAAACCGTAA 57.144 39.130 17.84 0.00 43.73 3.18
6111 7894 6.307155 GTGATGATCACTGAAAACCGTAAAG 58.693 40.000 17.84 0.00 43.73 1.85
6112 7895 4.742438 TGATCACTGAAAACCGTAAAGC 57.258 40.909 0.00 0.00 0.00 3.51
6120 7903 4.263435 TGAAAACCGTAAAGCCCGATTAT 58.737 39.130 0.00 0.00 0.00 1.28
6143 7926 4.454728 TGCAGCAAAAATCCTGGAATAC 57.545 40.909 0.00 0.00 0.00 1.89
6146 7929 4.440663 GCAGCAAAAATCCTGGAATACCTC 60.441 45.833 0.00 0.00 37.04 3.85
6190 7979 7.613022 TGATGATGAAAGTCTCAAAAGGCTAAT 59.387 33.333 0.00 0.00 36.07 1.73
6201 7990 6.151648 TCTCAAAAGGCTAATGAAAGTCATGG 59.848 38.462 4.05 0.00 37.15 3.66
6226 8015 5.523916 CAGATGTAGTTCCAAAGGTAATCGG 59.476 44.000 0.00 0.00 0.00 4.18
6233 8022 2.506231 TCCAAAGGTAATCGGTGCCATA 59.494 45.455 0.00 0.00 33.55 2.74
6308 8166 8.725405 TCAAACTGAATATATTCTTGCCGTTA 57.275 30.769 22.77 3.04 37.67 3.18
6320 8178 0.107410 TGCCGTTATAGGTGCTTGGG 60.107 55.000 0.00 0.00 0.00 4.12
6327 8185 4.039973 CGTTATAGGTGCTTGGGGAGATAA 59.960 45.833 0.00 0.00 0.00 1.75
6349 8207 5.549742 ATTTGTTGGGCATCAGAAGAAAA 57.450 34.783 0.00 0.00 0.00 2.29
6351 8209 4.589216 TGTTGGGCATCAGAAGAAAAAG 57.411 40.909 0.00 0.00 0.00 2.27
6379 8240 4.287067 AGGAATAGAAGCTGACCAAGTCAA 59.713 41.667 0.00 0.00 42.26 3.18
6394 8255 0.106149 GTCAAGTCCACGGAACCAGT 59.894 55.000 0.00 0.00 0.00 4.00
6417 8278 9.219603 CAGTAACTGATCTTGAAAACCAATCTA 57.780 33.333 0.00 0.00 31.55 1.98
6422 8283 7.173907 ACTGATCTTGAAAACCAATCTAGTGTG 59.826 37.037 0.00 0.00 33.68 3.82
6496 8360 2.094494 AGCTGAACGAGTATGTGGTGAG 60.094 50.000 0.00 0.00 0.00 3.51
6524 8391 4.133820 TGTTATCCCTTTGTGTCACAGTG 58.866 43.478 5.67 0.00 0.00 3.66
6532 8399 0.179086 TGTGTCACAGTGTGCGACAT 60.179 50.000 18.80 0.00 40.88 3.06
6776 8646 0.320374 TGTCCACCGCTTCGAAAGAT 59.680 50.000 0.00 0.00 41.60 2.40
6786 8656 6.035650 CACCGCTTCGAAAGATATGTTTCTTA 59.964 38.462 19.67 8.04 41.60 2.10
6829 8699 1.949525 CATTAAGGAAGATGGTGGCGG 59.050 52.381 0.00 0.00 0.00 6.13
6831 8701 0.251916 TAAGGAAGATGGTGGCGGTG 59.748 55.000 0.00 0.00 0.00 4.94
6838 8708 4.858680 TGGTGGCGGTGCAACGAA 62.859 61.111 31.65 12.82 38.12 3.85
6862 8732 0.892063 GAGCCTTTCAGGAGTCTCGT 59.108 55.000 0.00 0.00 37.67 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 75 7.426169 GCGCATTTTAAAAATGTTCATGGATTC 59.574 33.333 0.30 0.00 0.00 2.52
61 79 5.924786 TGCGCATTTTAAAAATGTTCATGG 58.075 33.333 5.66 1.69 0.00 3.66
202 226 7.701809 TTTCAGCCGGTTTTTGTTAAAATAG 57.298 32.000 1.90 0.00 35.80 1.73
211 235 3.059166 CTGGAATTTCAGCCGGTTTTTG 58.941 45.455 1.90 0.00 0.00 2.44
231 256 6.236409 TGTCTGAGATTTGCTTTTCTGATCT 58.764 36.000 0.00 0.00 0.00 2.75
242 267 4.023365 GGGATGCTATTGTCTGAGATTTGC 60.023 45.833 0.00 0.00 0.00 3.68
243 268 5.374921 AGGGATGCTATTGTCTGAGATTTG 58.625 41.667 0.00 0.00 0.00 2.32
252 279 2.843701 CCAGTGAGGGATGCTATTGTC 58.156 52.381 0.00 0.00 0.00 3.18
294 322 4.903010 ACGCAGGCGACCAAACGT 62.903 61.111 21.62 0.00 42.83 3.99
318 364 2.456119 GGCAACATGACTCCTCGCG 61.456 63.158 0.00 0.00 0.00 5.87
458 538 1.460273 GGGGATCAGCTCTCGTCTCC 61.460 65.000 0.00 0.00 0.00 3.71
488 573 1.302949 CAAGGGGCCTTGGATTCGA 59.697 57.895 0.84 0.00 46.88 3.71
489 574 3.924507 CAAGGGGCCTTGGATTCG 58.075 61.111 0.84 0.00 46.88 3.34
532 617 4.148825 ACCCGTCGAGCTCATGGC 62.149 66.667 15.40 0.00 42.19 4.40
699 807 3.515286 CTCGCATGCCAGCCCAAG 61.515 66.667 13.15 0.00 0.00 3.61
711 819 1.819928 ATTGTACCACATTGCTCGCA 58.180 45.000 0.00 0.00 0.00 5.10
721 829 5.391629 GCACTTTTGCCTAGTATTGTACCAC 60.392 44.000 0.00 0.00 43.66 4.16
722 830 4.698304 GCACTTTTGCCTAGTATTGTACCA 59.302 41.667 0.00 0.00 43.66 3.25
806 923 2.825532 AGCAAGCCAAATAACCAATCGT 59.174 40.909 0.00 0.00 0.00 3.73
828 945 1.272769 ACGAAGAGAACCACTGGTAGC 59.727 52.381 0.00 0.00 33.12 3.58
872 993 4.394729 CAGAAAAGTAAACCAGCCTACCA 58.605 43.478 0.00 0.00 0.00 3.25
873 994 3.190744 GCAGAAAAGTAAACCAGCCTACC 59.809 47.826 0.00 0.00 0.00 3.18
874 995 3.818773 TGCAGAAAAGTAAACCAGCCTAC 59.181 43.478 0.00 0.00 0.00 3.18
877 998 2.623416 ACTGCAGAAAAGTAAACCAGCC 59.377 45.455 23.35 0.00 0.00 4.85
879 1000 5.499139 TTGACTGCAGAAAAGTAAACCAG 57.501 39.130 23.35 0.00 0.00 4.00
887 1008 6.444633 ACATGAGAAATTGACTGCAGAAAAG 58.555 36.000 23.35 0.00 0.00 2.27
888 1009 6.395426 ACATGAGAAATTGACTGCAGAAAA 57.605 33.333 23.35 14.31 0.00 2.29
933 1055 8.597662 ATCTGTTCATCAAAATTTCAAACTGG 57.402 30.769 0.00 0.00 0.00 4.00
972 1094 4.363991 AAATCCTGACAGAGCAACTTCT 57.636 40.909 3.32 0.00 0.00 2.85
973 1100 6.597280 AGATAAAATCCTGACAGAGCAACTTC 59.403 38.462 3.32 0.00 0.00 3.01
1086 1227 7.380333 CGCGTAAATATATACACCTGTGAGAAA 59.620 37.037 3.94 0.00 0.00 2.52
1119 1267 0.893727 AAAACACTAAGGCCCCGCTG 60.894 55.000 0.00 0.00 0.00 5.18
1138 1286 7.385752 CCATAACGACTAACAAGTGGAAAGTTA 59.614 37.037 0.00 0.00 0.00 2.24
1143 1291 5.217978 ACCATAACGACTAACAAGTGGAA 57.782 39.130 0.00 0.00 0.00 3.53
1145 1293 5.579511 CCTTACCATAACGACTAACAAGTGG 59.420 44.000 0.00 0.00 0.00 4.00
1146 1294 6.309737 GTCCTTACCATAACGACTAACAAGTG 59.690 42.308 0.00 0.00 0.00 3.16
1148 1296 5.809051 GGTCCTTACCATAACGACTAACAAG 59.191 44.000 0.00 0.00 45.98 3.16
1150 1298 5.329035 GGTCCTTACCATAACGACTAACA 57.671 43.478 0.00 0.00 45.98 2.41
1195 1343 9.080097 AGCTGAGTATATCTCGTTAAGGTATTT 57.920 33.333 0.00 0.00 45.46 1.40
1222 1396 1.476891 GAGGCACGTGATAAGGAGTCA 59.523 52.381 22.23 0.00 0.00 3.41
1225 1399 2.672961 TTGAGGCACGTGATAAGGAG 57.327 50.000 22.23 0.00 0.00 3.69
1233 1407 2.289274 TGTTGTTGTATTGAGGCACGTG 59.711 45.455 12.28 12.28 0.00 4.49
1235 1409 3.242903 TGTTGTTGTTGTATTGAGGCACG 60.243 43.478 0.00 0.00 0.00 5.34
1236 1410 4.300189 TGTTGTTGTTGTATTGAGGCAC 57.700 40.909 0.00 0.00 0.00 5.01
1237 1411 4.158579 TGTTGTTGTTGTTGTATTGAGGCA 59.841 37.500 0.00 0.00 0.00 4.75
1238 1412 4.677584 TGTTGTTGTTGTTGTATTGAGGC 58.322 39.130 0.00 0.00 0.00 4.70
1239 1413 6.096036 TGTTGTTGTTGTTGTTGTATTGAGG 58.904 36.000 0.00 0.00 0.00 3.86
1240 1414 7.115520 TGTTGTTGTTGTTGTTGTTGTATTGAG 59.884 33.333 0.00 0.00 0.00 3.02
1241 1415 6.923508 TGTTGTTGTTGTTGTTGTTGTATTGA 59.076 30.769 0.00 0.00 0.00 2.57
1242 1416 7.110179 TGTTGTTGTTGTTGTTGTTGTATTG 57.890 32.000 0.00 0.00 0.00 1.90
1243 1417 7.715265 TTGTTGTTGTTGTTGTTGTTGTATT 57.285 28.000 0.00 0.00 0.00 1.89
1244 1418 7.570324 GCTTTGTTGTTGTTGTTGTTGTTGTAT 60.570 33.333 0.00 0.00 0.00 2.29
1245 1419 6.292381 GCTTTGTTGTTGTTGTTGTTGTTGTA 60.292 34.615 0.00 0.00 0.00 2.41
1553 1727 3.795688 TTGAGGAGAAGCTTGTCCAAT 57.204 42.857 36.25 21.89 42.72 3.16
2322 2497 2.183478 ATTCACATTGAGGCACGTGA 57.817 45.000 22.23 0.00 36.63 4.35
2464 2639 7.828508 TCTCTCTGCATTTTTGGCATATAAT 57.171 32.000 0.00 0.00 41.06 1.28
2530 2705 4.019792 TGTCAGCAGTGTTACATCCAAT 57.980 40.909 0.00 0.00 0.00 3.16
2542 2717 2.968574 CCCTAGTCCATATGTCAGCAGT 59.031 50.000 1.24 0.00 0.00 4.40
2558 2733 8.076178 CACTTTTGAACTTAAACATGTCCCTAG 58.924 37.037 0.00 0.00 0.00 3.02
2606 2781 5.106197 TGGTTAAACAATAGAGCATGTGCAG 60.106 40.000 7.83 0.00 45.16 4.41
2620 2795 1.821753 CCGCCCATCATGGTTAAACAA 59.178 47.619 2.07 0.00 35.17 2.83
2622 2797 0.744281 CCCGCCCATCATGGTTAAAC 59.256 55.000 2.07 0.00 35.17 2.01
2645 2821 1.202582 CTTGCTACAGTACAGAGCCGT 59.797 52.381 10.16 0.00 35.24 5.68
2695 2872 4.495184 GCCGACAAGGTCATAAAAATACCG 60.495 45.833 0.00 0.00 43.70 4.02
2697 2874 5.123344 ACAGCCGACAAGGTCATAAAAATAC 59.877 40.000 0.00 0.00 43.70 1.89
2718 2896 7.217636 CGAAAAATGATAGCAAGATGAACACAG 59.782 37.037 0.00 0.00 0.00 3.66
2780 2958 8.637281 TCACATGAAAATAATAATGCAGCAAG 57.363 30.769 0.00 0.00 0.00 4.01
2818 2996 9.424319 TGAACACAACTTTGTTAGCAATAAAAA 57.576 25.926 0.00 0.00 39.88 1.94
2819 2997 8.988064 TGAACACAACTTTGTTAGCAATAAAA 57.012 26.923 0.00 0.00 39.88 1.52
2820 2998 9.029243 CATGAACACAACTTTGTTAGCAATAAA 57.971 29.630 0.00 0.00 39.88 1.40
2821 2999 8.194104 ACATGAACACAACTTTGTTAGCAATAA 58.806 29.630 0.00 0.00 39.88 1.40
2822 3000 7.711846 ACATGAACACAACTTTGTTAGCAATA 58.288 30.769 0.00 0.00 39.88 1.90
2823 3001 6.572519 ACATGAACACAACTTTGTTAGCAAT 58.427 32.000 0.00 0.00 39.88 3.56
2824 3002 5.960113 ACATGAACACAACTTTGTTAGCAA 58.040 33.333 0.00 0.00 39.88 3.91
2825 3003 5.574891 ACATGAACACAACTTTGTTAGCA 57.425 34.783 0.00 0.00 39.88 3.49
2826 3004 7.979115 TTTACATGAACACAACTTTGTTAGC 57.021 32.000 0.00 0.00 39.88 3.09
2828 3006 9.692749 TGTTTTTACATGAACACAACTTTGTTA 57.307 25.926 0.00 0.00 39.88 2.41
2829 3007 8.594881 TGTTTTTACATGAACACAACTTTGTT 57.405 26.923 0.00 0.00 42.55 2.83
2830 3008 8.085296 TCTGTTTTTACATGAACACAACTTTGT 58.915 29.630 0.00 0.00 43.36 2.83
2831 3009 8.459521 TCTGTTTTTACATGAACACAACTTTG 57.540 30.769 0.00 0.00 32.73 2.77
2832 3010 9.301153 GATCTGTTTTTACATGAACACAACTTT 57.699 29.630 0.00 0.00 32.73 2.66
2833 3011 8.686334 AGATCTGTTTTTACATGAACACAACTT 58.314 29.630 0.00 0.00 32.73 2.66
2834 3012 8.131100 CAGATCTGTTTTTACATGAACACAACT 58.869 33.333 14.95 0.00 32.73 3.16
2835 3013 7.915397 ACAGATCTGTTTTTACATGAACACAAC 59.085 33.333 22.89 0.00 41.83 3.32
2836 3014 7.995289 ACAGATCTGTTTTTACATGAACACAA 58.005 30.769 22.89 0.00 41.83 3.33
2837 3015 7.566760 ACAGATCTGTTTTTACATGAACACA 57.433 32.000 22.89 0.00 41.83 3.72
2851 3029 6.965702 ACATAGTCTGTGCAAACAGATCTGTT 60.966 38.462 31.06 31.06 46.81 3.16
2852 3030 3.482156 AGTCTGTGCAAACAGATCTGT 57.518 42.857 22.89 22.89 46.81 3.41
2853 3031 4.934001 ACATAGTCTGTGCAAACAGATCTG 59.066 41.667 21.37 21.37 46.81 2.90
2854 3032 5.157940 ACATAGTCTGTGCAAACAGATCT 57.842 39.130 11.42 12.00 46.81 2.75
2866 3044 4.499183 GCTGTTCTAAGCACATAGTCTGT 58.501 43.478 0.00 0.00 43.01 3.41
2877 3055 8.547069 CAAACTAGATAAGATGCTGTTCTAAGC 58.453 37.037 0.00 0.00 43.82 3.09
2878 3056 9.809096 TCAAACTAGATAAGATGCTGTTCTAAG 57.191 33.333 0.00 0.00 0.00 2.18
2880 3058 9.809096 CTTCAAACTAGATAAGATGCTGTTCTA 57.191 33.333 0.00 0.00 0.00 2.10
2881 3059 8.535335 TCTTCAAACTAGATAAGATGCTGTTCT 58.465 33.333 0.00 0.00 0.00 3.01
2906 3084 9.415544 GGATATCTGCCAATTGAATGTTATTTC 57.584 33.333 7.12 0.00 0.00 2.17
2908 3086 8.481492 TGGATATCTGCCAATTGAATGTTATT 57.519 30.769 7.12 0.00 31.13 1.40
2948 3126 5.070685 AGTTGTTATGTCTTGAAGTTCCCC 58.929 41.667 0.00 0.00 0.00 4.81
2973 3151 2.420058 ATGTCCAGGATCCGGTTTTC 57.580 50.000 18.33 0.00 0.00 2.29
3045 3230 9.923143 GGTGGCTAAACTGTAAGAAAAATATTT 57.077 29.630 0.00 0.00 37.43 1.40
3046 3231 8.241367 CGGTGGCTAAACTGTAAGAAAAATATT 58.759 33.333 0.00 0.00 37.43 1.28
3047 3232 7.392393 ACGGTGGCTAAACTGTAAGAAAAATAT 59.608 33.333 0.00 0.00 37.90 1.28
3048 3233 6.711645 ACGGTGGCTAAACTGTAAGAAAAATA 59.288 34.615 0.00 0.00 37.90 1.40
3049 3234 5.533528 ACGGTGGCTAAACTGTAAGAAAAAT 59.466 36.000 0.00 0.00 37.90 1.82
3070 3255 0.317479 AGTGGAGAGAAACCGAACGG 59.683 55.000 11.83 11.83 42.03 4.44
3071 3256 2.059541 GAAGTGGAGAGAAACCGAACG 58.940 52.381 0.00 0.00 0.00 3.95
3072 3257 2.059541 CGAAGTGGAGAGAAACCGAAC 58.940 52.381 0.00 0.00 0.00 3.95
3073 3258 1.604693 GCGAAGTGGAGAGAAACCGAA 60.605 52.381 0.00 0.00 0.00 4.30
3074 3259 0.038526 GCGAAGTGGAGAGAAACCGA 60.039 55.000 0.00 0.00 0.00 4.69
3075 3260 0.038159 AGCGAAGTGGAGAGAAACCG 60.038 55.000 0.00 0.00 0.00 4.44
3076 3261 1.000955 TGAGCGAAGTGGAGAGAAACC 59.999 52.381 0.00 0.00 0.00 3.27
3077 3262 2.440539 TGAGCGAAGTGGAGAGAAAC 57.559 50.000 0.00 0.00 0.00 2.78
3078 3263 2.365617 AGTTGAGCGAAGTGGAGAGAAA 59.634 45.455 0.00 0.00 0.00 2.52
3079 3264 1.964223 AGTTGAGCGAAGTGGAGAGAA 59.036 47.619 0.00 0.00 0.00 2.87
3080 3265 1.542030 GAGTTGAGCGAAGTGGAGAGA 59.458 52.381 0.00 0.00 0.00 3.10
3081 3266 1.403514 GGAGTTGAGCGAAGTGGAGAG 60.404 57.143 0.00 0.00 0.00 3.20
3082 3267 0.603569 GGAGTTGAGCGAAGTGGAGA 59.396 55.000 0.00 0.00 0.00 3.71
3083 3268 0.734253 CGGAGTTGAGCGAAGTGGAG 60.734 60.000 0.00 0.00 0.00 3.86
3084 3269 1.289066 CGGAGTTGAGCGAAGTGGA 59.711 57.895 0.00 0.00 0.00 4.02
3085 3270 2.383527 GCGGAGTTGAGCGAAGTGG 61.384 63.158 0.00 0.00 0.00 4.00
3086 3271 3.159984 GCGGAGTTGAGCGAAGTG 58.840 61.111 0.00 0.00 0.00 3.16
3093 3278 2.202676 GAGCTCCGCGGAGTTGAG 60.203 66.667 45.36 28.27 43.70 3.02
3094 3279 4.116328 CGAGCTCCGCGGAGTTGA 62.116 66.667 45.36 19.62 43.70 3.18
3101 3286 3.181967 CTCAAACCGAGCTCCGCG 61.182 66.667 8.47 0.00 34.18 6.46
3108 3293 2.097038 CGGAGCAGCTCAAACCGAG 61.097 63.158 24.09 2.40 45.31 4.63
3109 3294 1.529152 TACGGAGCAGCTCAAACCGA 61.529 55.000 23.35 7.54 45.31 4.69
3111 3296 1.519408 TTTACGGAGCAGCTCAAACC 58.481 50.000 24.09 6.26 31.08 3.27
3112 3297 3.555518 CTTTTTACGGAGCAGCTCAAAC 58.444 45.455 24.09 5.93 31.08 2.93
3113 3298 2.031157 GCTTTTTACGGAGCAGCTCAAA 60.031 45.455 24.09 12.88 38.73 2.69
3114 3299 1.535462 GCTTTTTACGGAGCAGCTCAA 59.465 47.619 24.09 7.15 38.73 3.02
3115 3300 1.156736 GCTTTTTACGGAGCAGCTCA 58.843 50.000 24.09 0.20 38.73 4.26
3116 3301 1.129437 CAGCTTTTTACGGAGCAGCTC 59.871 52.381 14.69 14.69 38.82 4.09
3117 3302 1.160137 CAGCTTTTTACGGAGCAGCT 58.840 50.000 0.00 0.00 41.62 4.24
3118 3303 0.455126 GCAGCTTTTTACGGAGCAGC 60.455 55.000 0.00 0.00 42.67 5.25
3119 3304 1.135859 CAGCAGCTTTTTACGGAGCAG 60.136 52.381 0.00 0.00 41.31 4.24
3120 3305 0.874390 CAGCAGCTTTTTACGGAGCA 59.126 50.000 0.00 0.00 41.31 4.26
3121 3306 0.455126 GCAGCAGCTTTTTACGGAGC 60.455 55.000 0.00 0.00 39.17 4.70
3122 3307 0.874390 TGCAGCAGCTTTTTACGGAG 59.126 50.000 1.76 0.00 42.74 4.63
3123 3308 0.874390 CTGCAGCAGCTTTTTACGGA 59.126 50.000 10.14 0.00 42.74 4.69
3124 3309 3.389741 CTGCAGCAGCTTTTTACGG 57.610 52.632 10.14 0.00 42.74 4.02
3152 3337 1.510383 CGTGACTCAGCTCCAGGAG 59.490 63.158 12.81 12.81 37.18 3.69
3153 3338 1.979155 CCGTGACTCAGCTCCAGGA 60.979 63.158 0.00 0.00 0.00 3.86
3154 3339 2.575993 CCGTGACTCAGCTCCAGG 59.424 66.667 0.00 0.00 0.00 4.45
3155 3340 1.943116 CTCCCGTGACTCAGCTCCAG 61.943 65.000 0.00 0.00 0.00 3.86
3156 3341 1.979155 CTCCCGTGACTCAGCTCCA 60.979 63.158 0.00 0.00 0.00 3.86
3157 3342 2.888863 CTCCCGTGACTCAGCTCC 59.111 66.667 0.00 0.00 0.00 4.70
3158 3343 2.183046 GCTCCCGTGACTCAGCTC 59.817 66.667 0.00 0.00 0.00 4.09
3159 3344 3.753434 CGCTCCCGTGACTCAGCT 61.753 66.667 0.00 0.00 0.00 4.24
3160 3345 4.803426 CCGCTCCCGTGACTCAGC 62.803 72.222 0.00 0.00 0.00 4.26
3161 3346 3.057547 CTCCGCTCCCGTGACTCAG 62.058 68.421 0.00 0.00 0.00 3.35
3162 3347 3.062466 CTCCGCTCCCGTGACTCA 61.062 66.667 0.00 0.00 0.00 3.41
3163 3348 2.750637 TCTCCGCTCCCGTGACTC 60.751 66.667 0.00 0.00 0.00 3.36
3164 3349 2.752238 CTCTCCGCTCCCGTGACT 60.752 66.667 0.00 0.00 0.00 3.41
3165 3350 1.874345 TTTCTCTCCGCTCCCGTGAC 61.874 60.000 0.00 0.00 0.00 3.67
3166 3351 1.605451 TTTCTCTCCGCTCCCGTGA 60.605 57.895 0.00 0.00 0.00 4.35
3167 3352 1.446272 GTTTCTCTCCGCTCCCGTG 60.446 63.158 0.00 0.00 0.00 4.94
3168 3353 1.606889 AGTTTCTCTCCGCTCCCGT 60.607 57.895 0.00 0.00 0.00 5.28
3169 3354 1.153745 CAGTTTCTCTCCGCTCCCG 60.154 63.158 0.00 0.00 0.00 5.14
3170 3355 0.608640 TTCAGTTTCTCTCCGCTCCC 59.391 55.000 0.00 0.00 0.00 4.30
3171 3356 1.000955 TGTTCAGTTTCTCTCCGCTCC 59.999 52.381 0.00 0.00 0.00 4.70
3172 3357 2.333014 CTGTTCAGTTTCTCTCCGCTC 58.667 52.381 0.00 0.00 0.00 5.03
3173 3358 1.001406 CCTGTTCAGTTTCTCTCCGCT 59.999 52.381 0.00 0.00 0.00 5.52
3174 3359 1.433534 CCTGTTCAGTTTCTCTCCGC 58.566 55.000 0.00 0.00 0.00 5.54
3175 3360 1.433534 GCCTGTTCAGTTTCTCTCCG 58.566 55.000 0.00 0.00 0.00 4.63
3176 3361 1.611936 GGGCCTGTTCAGTTTCTCTCC 60.612 57.143 0.84 0.00 0.00 3.71
3177 3362 1.349357 AGGGCCTGTTCAGTTTCTCTC 59.651 52.381 4.50 0.00 0.00 3.20
3178 3363 1.439543 AGGGCCTGTTCAGTTTCTCT 58.560 50.000 4.50 0.00 0.00 3.10
3179 3364 2.278332 AAGGGCCTGTTCAGTTTCTC 57.722 50.000 6.92 0.00 0.00 2.87
3180 3365 3.876309 TTAAGGGCCTGTTCAGTTTCT 57.124 42.857 6.92 0.00 0.00 2.52
3181 3366 5.885912 TGATATTAAGGGCCTGTTCAGTTTC 59.114 40.000 6.92 0.00 0.00 2.78
3182 3367 5.652452 GTGATATTAAGGGCCTGTTCAGTTT 59.348 40.000 6.92 0.00 0.00 2.66
3183 3368 5.044846 AGTGATATTAAGGGCCTGTTCAGTT 60.045 40.000 6.92 0.00 0.00 3.16
3184 3369 4.475016 AGTGATATTAAGGGCCTGTTCAGT 59.525 41.667 6.92 6.40 0.00 3.41
3185 3370 4.818546 CAGTGATATTAAGGGCCTGTTCAG 59.181 45.833 6.92 0.00 0.00 3.02
3186 3371 4.227300 ACAGTGATATTAAGGGCCTGTTCA 59.773 41.667 6.92 3.31 0.00 3.18
3187 3372 4.781934 ACAGTGATATTAAGGGCCTGTTC 58.218 43.478 6.92 0.36 0.00 3.18
3188 3373 4.475016 AGACAGTGATATTAAGGGCCTGTT 59.525 41.667 6.92 0.00 32.26 3.16
3189 3374 4.040755 AGACAGTGATATTAAGGGCCTGT 58.959 43.478 6.92 0.00 34.61 4.00
3190 3375 4.384056 CAGACAGTGATATTAAGGGCCTG 58.616 47.826 6.92 0.00 0.00 4.85
3191 3376 3.181450 GCAGACAGTGATATTAAGGGCCT 60.181 47.826 0.00 0.00 0.00 5.19
3192 3377 3.142174 GCAGACAGTGATATTAAGGGCC 58.858 50.000 0.00 0.00 0.00 5.80
3193 3378 3.142174 GGCAGACAGTGATATTAAGGGC 58.858 50.000 0.00 0.00 0.00 5.19
3194 3379 4.130118 GTGGCAGACAGTGATATTAAGGG 58.870 47.826 0.00 0.00 0.00 3.95
3195 3380 5.028549 AGTGGCAGACAGTGATATTAAGG 57.971 43.478 0.00 0.00 0.00 2.69
3196 3381 7.268586 AGTTAGTGGCAGACAGTGATATTAAG 58.731 38.462 0.00 0.00 33.87 1.85
3197 3382 7.182817 AGTTAGTGGCAGACAGTGATATTAA 57.817 36.000 0.00 0.00 33.87 1.40
3198 3383 6.791867 AGTTAGTGGCAGACAGTGATATTA 57.208 37.500 0.00 0.00 33.87 0.98
3199 3384 5.683876 AGTTAGTGGCAGACAGTGATATT 57.316 39.130 0.00 0.00 33.87 1.28
3298 3483 2.613691 GGAGTTTATCCGTCGCTTCAA 58.386 47.619 0.00 0.00 38.67 2.69
3299 3484 2.288961 GGAGTTTATCCGTCGCTTCA 57.711 50.000 0.00 0.00 38.67 3.02
3347 3532 8.958060 AGATTTAGCAGGTCTATAGATGGTAA 57.042 34.615 17.86 17.86 34.75 2.85
3349 3534 6.439058 GGAGATTTAGCAGGTCTATAGATGGT 59.561 42.308 5.57 9.26 0.00 3.55
3388 3574 1.440618 TTGTGTACAGTGGGGATGGT 58.559 50.000 0.00 0.00 0.00 3.55
3395 3581 3.342719 TGGTGCATATTGTGTACAGTGG 58.657 45.455 0.00 0.00 44.25 4.00
3396 3582 3.374988 CCTGGTGCATATTGTGTACAGTG 59.625 47.826 0.00 0.00 44.25 3.66
3397 3583 3.609853 CCTGGTGCATATTGTGTACAGT 58.390 45.455 0.00 0.00 44.25 3.55
3398 3584 2.355756 GCCTGGTGCATATTGTGTACAG 59.644 50.000 0.00 0.00 44.25 2.74
3399 3585 2.364632 GCCTGGTGCATATTGTGTACA 58.635 47.619 4.23 0.00 44.25 2.90
3413 3599 0.039618 CACAGGGGTTTATGCCTGGT 59.960 55.000 0.00 0.00 34.93 4.00
3421 3607 2.506231 TGACACACTTCACAGGGGTTTA 59.494 45.455 0.00 0.00 0.00 2.01
3425 3611 0.886490 GCTGACACACTTCACAGGGG 60.886 60.000 0.00 0.00 0.00 4.79
3432 3618 2.735663 CACTCATCTGCTGACACACTTC 59.264 50.000 0.00 0.00 0.00 3.01
3439 3625 2.493675 TCACTACCACTCATCTGCTGAC 59.506 50.000 0.00 0.00 0.00 3.51
3440 3626 2.757314 CTCACTACCACTCATCTGCTGA 59.243 50.000 0.00 0.00 0.00 4.26
3441 3627 2.495270 ACTCACTACCACTCATCTGCTG 59.505 50.000 0.00 0.00 0.00 4.41
3452 3638 0.538746 TCGGCTGACACTCACTACCA 60.539 55.000 0.00 0.00 0.00 3.25
3468 3654 0.873054 GAAGCATGGATCAGCATCGG 59.127 55.000 0.00 0.00 0.00 4.18
3469 3655 1.531578 CAGAAGCATGGATCAGCATCG 59.468 52.381 0.00 0.00 34.01 3.84
3470 3656 1.267261 GCAGAAGCATGGATCAGCATC 59.733 52.381 0.00 4.47 41.58 3.91
3471 3657 1.133761 AGCAGAAGCATGGATCAGCAT 60.134 47.619 0.00 0.00 45.49 3.79
3472 3658 0.255033 AGCAGAAGCATGGATCAGCA 59.745 50.000 0.00 0.00 45.49 4.41
3473 3659 0.945813 GAGCAGAAGCATGGATCAGC 59.054 55.000 0.00 0.00 45.49 4.26
3509 3695 9.105844 AGCCTAAATTAGACCACATCAGTATAT 57.894 33.333 0.83 0.00 0.00 0.86
3525 3711 8.755028 GTCCCCTGAAATTTTAAGCCTAAATTA 58.245 33.333 0.00 0.00 34.91 1.40
3559 3745 0.174845 CTACTTCCGCACCATCCGAA 59.825 55.000 0.00 0.00 0.00 4.30
3570 3756 6.982852 TCTATCAGGAAAATAGCTACTTCCG 58.017 40.000 22.16 18.32 42.91 4.30
3589 3776 2.028930 CGCCTACCCAACATCCTCTATC 60.029 54.545 0.00 0.00 0.00 2.08
3602 3789 1.308998 CCAAACATCATCGCCTACCC 58.691 55.000 0.00 0.00 0.00 3.69
3621 3808 0.104304 CCACGTGGGGACTAGCATAC 59.896 60.000 27.57 0.00 0.00 2.39
3627 3814 1.755395 CGGATCCACGTGGGGACTA 60.755 63.158 33.40 15.25 40.44 2.59
3628 3815 3.075005 CGGATCCACGTGGGGACT 61.075 66.667 33.40 16.23 40.44 3.85
3629 3816 2.652095 TTCGGATCCACGTGGGGAC 61.652 63.158 33.40 22.73 40.44 4.46
3630 3817 2.284039 TTCGGATCCACGTGGGGA 60.284 61.111 33.40 21.58 42.21 4.81
3631 3818 2.125269 GTTCGGATCCACGTGGGG 60.125 66.667 33.40 19.76 37.22 4.96
3632 3819 2.508439 CGTTCGGATCCACGTGGG 60.508 66.667 33.40 17.93 35.41 4.61
3678 3866 3.922171 AGCTAGCCTGTTAAGCTGAAT 57.078 42.857 12.13 0.00 44.67 2.57
3742 3933 4.223923 AGACCAAGGTTAGATCTTGACCAG 59.776 45.833 22.72 16.41 42.94 4.00
3777 3968 4.838423 GGCCTTTGGGGTAAAATATATGCT 59.162 41.667 0.00 0.00 37.43 3.79
3829 4034 3.681897 GCTTAACAGGTCACTCACATCAG 59.318 47.826 0.00 0.00 0.00 2.90
3836 4041 4.153117 CACATCAAGCTTAACAGGTCACTC 59.847 45.833 0.00 0.00 0.00 3.51
3840 4045 2.162408 GCCACATCAAGCTTAACAGGTC 59.838 50.000 0.00 0.00 0.00 3.85
3848 4053 0.037877 AGAGCAGCCACATCAAGCTT 59.962 50.000 0.00 0.00 37.18 3.74
3851 4056 2.983229 ACTAAGAGCAGCCACATCAAG 58.017 47.619 0.00 0.00 0.00 3.02
3855 4060 1.912043 AGGAACTAAGAGCAGCCACAT 59.088 47.619 0.00 0.00 36.02 3.21
3859 4064 1.557371 AGGAAGGAACTAAGAGCAGCC 59.443 52.381 0.00 0.00 38.49 4.85
3893 4112 7.650104 GGAGAGGAATCTAATTCAACTTAGACG 59.350 40.741 2.42 0.00 39.79 4.18
3944 4163 1.757340 AGGTAGTAGACGCCCTGCC 60.757 63.158 0.00 0.00 34.05 4.85
4095 4314 5.497635 TGCTCGATCTGCTCTATATCATC 57.502 43.478 8.62 0.00 0.00 2.92
4098 4317 4.043750 GCATGCTCGATCTGCTCTATATC 58.956 47.826 11.37 0.00 33.15 1.63
4103 4322 0.249531 CTGCATGCTCGATCTGCTCT 60.250 55.000 20.33 0.00 36.84 4.09
4136 4356 5.760193 TCATGCGCATGTTGTTTTTATTC 57.240 34.783 40.57 0.00 39.72 1.75
4144 4364 2.910199 AGACTATCATGCGCATGTTGT 58.090 42.857 40.57 34.42 39.72 3.32
4147 4367 4.053983 CACTAAGACTATCATGCGCATGT 58.946 43.478 40.57 30.95 39.72 3.21
4148 4368 3.431233 CCACTAAGACTATCATGCGCATG 59.569 47.826 38.48 38.48 40.09 4.06
4149 4369 3.321968 TCCACTAAGACTATCATGCGCAT 59.678 43.478 19.28 19.28 0.00 4.73
4167 4393 3.999663 CTGAAGAGTTGAGGTCAATCCAC 59.000 47.826 0.00 0.00 38.24 4.02
4191 4417 0.888619 ACGTCGCATTCTCTTCTCCA 59.111 50.000 0.00 0.00 0.00 3.86
4198 4424 2.158959 CCCACGACGTCGCATTCTC 61.159 63.158 35.92 0.00 44.43 2.87
4206 4432 0.878961 AACAAGCTTCCCACGACGTC 60.879 55.000 5.18 5.18 0.00 4.34
4234 4460 4.202050 GCAATCATTACTTCATCCCACCAC 60.202 45.833 0.00 0.00 0.00 4.16
4235 4461 3.953612 GCAATCATTACTTCATCCCACCA 59.046 43.478 0.00 0.00 0.00 4.17
4241 4467 5.065218 ACGAGTTGGCAATCATTACTTCATC 59.935 40.000 1.92 0.00 0.00 2.92
4250 4476 1.949525 GGCATACGAGTTGGCAATCAT 59.050 47.619 1.92 0.00 39.31 2.45
4253 4479 0.255890 AGGGCATACGAGTTGGCAAT 59.744 50.000 1.92 0.00 41.14 3.56
4262 4488 0.179048 CCAATGAGCAGGGCATACGA 60.179 55.000 0.00 0.00 0.00 3.43
4263 4489 0.464373 ACCAATGAGCAGGGCATACG 60.464 55.000 0.00 0.00 0.00 3.06
4264 4490 1.767759 AACCAATGAGCAGGGCATAC 58.232 50.000 0.00 0.00 0.00 2.39
4279 4505 1.688811 GGCCATGGACAGGTAACCA 59.311 57.895 18.40 0.00 40.57 3.67
4282 4508 1.195442 TGACGGCCATGGACAGGTAA 61.195 55.000 20.22 0.00 0.00 2.85
4396 4622 5.361285 AGCTGTCTGTACTAGGGTAATGAAG 59.639 44.000 0.00 0.00 0.00 3.02
4435 4661 4.762251 ACGAAAAGATGGAGGAAAAGAAGG 59.238 41.667 0.00 0.00 0.00 3.46
4539 6269 5.067023 GCCAATATAGCTCAGCTTTTCAGTT 59.933 40.000 3.31 0.00 40.44 3.16
4563 6293 7.492344 GGTAATAAAACAGCCCAGATTGATTTG 59.508 37.037 0.00 0.00 0.00 2.32
4564 6294 7.364673 GGGTAATAAAACAGCCCAGATTGATTT 60.365 37.037 0.00 0.00 39.13 2.17
4566 6296 5.598417 GGGTAATAAAACAGCCCAGATTGAT 59.402 40.000 0.00 0.00 39.13 2.57
4578 6308 5.766174 GTCAACAGACAGGGGTAATAAAACA 59.234 40.000 0.00 0.00 32.50 2.83
4579 6309 5.766174 TGTCAACAGACAGGGGTAATAAAAC 59.234 40.000 0.00 0.00 37.36 2.43
4586 6316 1.418637 GGTTGTCAACAGACAGGGGTA 59.581 52.381 17.29 0.00 42.72 3.69
4587 6317 0.182775 GGTTGTCAACAGACAGGGGT 59.817 55.000 17.29 0.00 42.72 4.95
4588 6318 0.474184 AGGTTGTCAACAGACAGGGG 59.526 55.000 17.29 0.00 42.72 4.79
4595 6334 2.195922 GCTGCAAAAGGTTGTCAACAG 58.804 47.619 17.29 5.53 37.06 3.16
4598 6337 0.814457 ACGCTGCAAAAGGTTGTCAA 59.186 45.000 0.00 0.00 37.06 3.18
4638 6377 6.072112 ACTACTTGAACAATCGTTGCAAAT 57.928 33.333 0.00 0.00 34.75 2.32
4639 6378 5.493133 ACTACTTGAACAATCGTTGCAAA 57.507 34.783 0.00 0.00 34.75 3.68
4643 6382 9.741168 CAAATACTACTACTTGAACAATCGTTG 57.259 33.333 0.00 0.00 34.75 4.10
4645 6384 7.064253 GGCAAATACTACTACTTGAACAATCGT 59.936 37.037 0.00 0.00 0.00 3.73
4657 6396 8.283291 GCACAATAGAATGGCAAATACTACTAC 58.717 37.037 0.00 0.00 0.00 2.73
4670 6409 2.173356 TCCAGAGGGCACAATAGAATGG 59.827 50.000 0.00 0.00 0.00 3.16
4691 6430 3.508845 ACCCAAACATGTAGACAGCTT 57.491 42.857 0.00 0.00 0.00 3.74
4723 6462 1.451387 GCCACATCGAAATCCCCGT 60.451 57.895 0.00 0.00 0.00 5.28
4734 6473 1.080995 GCTGTCTCAGACGCCACATC 61.081 60.000 9.66 0.00 34.95 3.06
4735 6474 1.079543 GCTGTCTCAGACGCCACAT 60.080 57.895 9.66 0.00 34.95 3.21
4752 6491 1.532868 GCATCACTCCCGTAATCATGC 59.467 52.381 0.00 0.00 0.00 4.06
4782 6521 2.034221 GCCGGCTTCAGGTTTCCT 59.966 61.111 22.15 0.00 0.00 3.36
4825 6564 4.142381 GCAGAAAATCACACCCTGGAATAC 60.142 45.833 0.00 0.00 0.00 1.89
4828 6567 2.158475 AGCAGAAAATCACACCCTGGAA 60.158 45.455 0.00 0.00 0.00 3.53
4900 6640 6.015095 ACCTGATTCCCAAACTTCATTCTTTC 60.015 38.462 0.00 0.00 0.00 2.62
4907 6647 3.146066 CGAACCTGATTCCCAAACTTCA 58.854 45.455 0.00 0.00 33.26 3.02
4909 6649 2.884639 CACGAACCTGATTCCCAAACTT 59.115 45.455 0.00 0.00 33.26 2.66
4917 6657 4.003648 AGATTCCAACACGAACCTGATTC 58.996 43.478 0.00 0.00 0.00 2.52
4962 6702 2.747446 CGGGTTCTTTTCACATCCGATT 59.253 45.455 0.00 0.00 38.42 3.34
4965 6705 1.463444 GACGGGTTCTTTTCACATCCG 59.537 52.381 0.00 0.00 41.45 4.18
4978 6718 3.569049 CTCCAGCGAACGACGGGTT 62.569 63.158 0.00 0.00 42.96 4.11
4983 6723 0.038526 TTCTTCCTCCAGCGAACGAC 60.039 55.000 0.00 0.00 0.00 4.34
5008 6748 2.432146 TGAGGTCCACAGCATATGAGAC 59.568 50.000 6.97 4.55 35.98 3.36
5011 6751 2.105306 CCATGAGGTCCACAGCATATGA 59.895 50.000 6.97 0.00 0.00 2.15
5042 6782 3.386726 CCCGGAAACATAGTCATCAGGTA 59.613 47.826 0.73 0.00 0.00 3.08
5065 6805 4.464008 GTGAATGCATCCAGGATCCTTAA 58.536 43.478 13.00 2.99 0.00 1.85
5086 6826 4.502259 GGCAGATATCTTCATTCGTCTGGT 60.502 45.833 1.33 0.00 34.99 4.00
5098 6838 4.934356 TCAAAACCCTTGGCAGATATCTT 58.066 39.130 1.33 0.00 0.00 2.40
5104 6844 2.746279 TCTTCAAAACCCTTGGCAGA 57.254 45.000 0.00 0.00 0.00 4.26
5105 6845 3.817709 TTTCTTCAAAACCCTTGGCAG 57.182 42.857 0.00 0.00 0.00 4.85
5129 6869 9.449719 TCAATTTCCTCCTAGTGAAAAAGATAC 57.550 33.333 4.16 0.00 34.43 2.24
5138 6878 6.627087 ACATCTTCAATTTCCTCCTAGTGA 57.373 37.500 0.00 0.00 0.00 3.41
5140 6880 6.109359 CGAACATCTTCAATTTCCTCCTAGT 58.891 40.000 0.00 0.00 0.00 2.57
5141 6881 6.036517 CACGAACATCTTCAATTTCCTCCTAG 59.963 42.308 0.00 0.00 0.00 3.02
5143 6883 4.697352 CACGAACATCTTCAATTTCCTCCT 59.303 41.667 0.00 0.00 0.00 3.69
5178 6919 6.366604 CAGACATGATCAGATACTTCATGAGC 59.633 42.308 15.71 8.90 46.16 4.26
5188 6929 5.085219 AGAGGATGCAGACATGATCAGATA 58.915 41.667 0.00 0.00 36.35 1.98
5214 6955 3.803715 GCAGCAGTTTCTGGAGTAAGTCA 60.804 47.826 0.00 0.00 34.74 3.41
5249 6990 8.035984 TCGTCTCTCTGTCATATATACTACTGG 58.964 40.741 0.00 0.00 0.00 4.00
5250 6991 8.989653 TCGTCTCTCTGTCATATATACTACTG 57.010 38.462 0.00 0.00 0.00 2.74
5253 6994 7.364851 CCCCTCGTCTCTCTGTCATATATACTA 60.365 44.444 0.00 0.00 0.00 1.82
5259 7000 2.489985 CCCCCTCGTCTCTCTGTCATAT 60.490 54.545 0.00 0.00 0.00 1.78
5283 7024 3.869272 GCCACAATCCTCGCAGCG 61.869 66.667 9.06 9.06 0.00 5.18
5357 7098 6.705825 TGTTTCGAATGAGTTGATGAGAGAAA 59.294 34.615 0.00 0.00 0.00 2.52
5407 7148 1.618837 TGTCTCTTGTGCCCACTCTAC 59.381 52.381 0.00 0.00 0.00 2.59
5412 7153 0.798776 CGAATGTCTCTTGTGCCCAC 59.201 55.000 0.00 0.00 0.00 4.61
5434 7175 4.142469 GCGAGCCATACTGTACCAATTTTT 60.142 41.667 0.00 0.00 0.00 1.94
5456 7197 0.107312 ATCTGGTGACTGCAGATGGC 60.107 55.000 23.35 7.19 45.13 4.40
5465 7206 5.188555 TCTTTGCTATCAAGATCTGGTGACT 59.811 40.000 0.00 0.00 33.12 3.41
5482 7223 3.326006 TCTTCATGACTGTCCTCTTTGCT 59.674 43.478 5.17 0.00 0.00 3.91
5483 7224 3.668447 TCTTCATGACTGTCCTCTTTGC 58.332 45.455 5.17 0.00 0.00 3.68
5484 7225 3.683822 GCTCTTCATGACTGTCCTCTTTG 59.316 47.826 5.17 0.00 0.00 2.77
5497 7238 0.179089 CTGTCCCCTCGCTCTTCATG 60.179 60.000 0.00 0.00 0.00 3.07
5502 7243 1.000993 ATCACTGTCCCCTCGCTCT 59.999 57.895 0.00 0.00 0.00 4.09
5530 7274 6.885376 TCCATTAAATCCTTGTAGGCGTTAAA 59.115 34.615 0.00 0.00 34.61 1.52
5547 7291 7.957002 TGATACAAAAACCTTGCTCCATTAAA 58.043 30.769 0.00 0.00 0.00 1.52
5548 7292 7.531857 TGATACAAAAACCTTGCTCCATTAA 57.468 32.000 0.00 0.00 0.00 1.40
5566 7310 1.136110 TGCGAGCTTCCGAATGATACA 59.864 47.619 0.00 0.00 0.00 2.29
5572 7316 0.605319 TTGGTTGCGAGCTTCCGAAT 60.605 50.000 4.48 0.00 0.00 3.34
5601 7345 1.733912 GTGTCGAGCATGATTCTGCAA 59.266 47.619 0.00 0.00 44.77 4.08
5687 7431 1.538512 CTACTATGCCATGCCATGCAC 59.461 52.381 0.00 0.00 43.04 4.57
5698 7469 4.689612 TCATTGAACCCTCTACTATGCC 57.310 45.455 0.00 0.00 0.00 4.40
5723 7494 0.530650 AGCCACGAGCCACATAATCG 60.531 55.000 0.00 0.00 45.47 3.34
5730 7501 2.815647 GTAGCAGCCACGAGCCAC 60.816 66.667 0.00 0.00 45.47 5.01
5731 7502 2.997315 AGTAGCAGCCACGAGCCA 60.997 61.111 0.00 0.00 45.47 4.75
5757 7531 3.490759 CTACGCAGCTTGGTGCCG 61.491 66.667 17.42 14.54 44.23 5.69
5823 7597 3.317603 TCATCGCATTCTTCACAGTCA 57.682 42.857 0.00 0.00 0.00 3.41
5826 7600 3.850273 GCTTTTCATCGCATTCTTCACAG 59.150 43.478 0.00 0.00 0.00 3.66
5897 7676 6.003326 TCTGTTTGCATTCTCCAGTATCAAA 58.997 36.000 0.00 0.00 0.00 2.69
5903 7683 3.777106 TCTCTGTTTGCATTCTCCAGT 57.223 42.857 0.00 0.00 0.00 4.00
5906 7686 7.719778 AAATTTTTCTCTGTTTGCATTCTCC 57.280 32.000 0.00 0.00 0.00 3.71
5971 7754 0.946221 CACCTGTCTGTCGTCCTTGC 60.946 60.000 0.00 0.00 0.00 4.01
5978 7761 2.740055 GCTGCCACCTGTCTGTCG 60.740 66.667 0.00 0.00 0.00 4.35
5986 7769 1.378250 GCTTGAGATGCTGCCACCT 60.378 57.895 0.00 0.00 0.00 4.00
5997 7780 1.709578 AGAGTCACCAGTGCTTGAGA 58.290 50.000 0.00 0.00 0.00 3.27
6012 7795 5.238650 CCGTTTCAGTTTTGGAACATAGAGT 59.761 40.000 0.21 0.00 42.03 3.24
6020 7803 1.135333 GCACCCGTTTCAGTTTTGGAA 59.865 47.619 0.00 0.00 0.00 3.53
6089 7872 5.324697 GCTTTACGGTTTTCAGTGATCATC 58.675 41.667 0.00 0.00 0.00 2.92
6095 7878 1.069500 CGGGCTTTACGGTTTTCAGTG 60.069 52.381 0.00 0.00 0.00 3.66
6096 7879 1.202675 TCGGGCTTTACGGTTTTCAGT 60.203 47.619 0.00 0.00 0.00 3.41
6097 7880 1.515081 TCGGGCTTTACGGTTTTCAG 58.485 50.000 0.00 0.00 0.00 3.02
6104 7887 2.356382 TGCAAATAATCGGGCTTTACGG 59.644 45.455 0.00 0.00 0.00 4.02
6109 7892 1.473258 TGCTGCAAATAATCGGGCTT 58.527 45.000 0.00 0.00 0.00 4.35
6111 7894 2.292103 TTTGCTGCAAATAATCGGGC 57.708 45.000 22.84 0.00 0.00 6.13
6112 7895 4.270808 GGATTTTTGCTGCAAATAATCGGG 59.729 41.667 29.89 0.00 35.01 5.14
6120 7903 3.834489 TTCCAGGATTTTTGCTGCAAA 57.166 38.095 22.84 22.84 0.00 3.68
6190 7979 4.558226 ACTACATCTGCCATGACTTTCA 57.442 40.909 0.00 0.00 0.00 2.69
6201 7990 5.006746 CGATTACCTTTGGAACTACATCTGC 59.993 44.000 0.00 0.00 0.00 4.26
6308 8166 5.103515 ACAAATTATCTCCCCAAGCACCTAT 60.104 40.000 0.00 0.00 0.00 2.57
6320 8178 4.889409 TCTGATGCCCAACAAATTATCTCC 59.111 41.667 0.00 0.00 0.00 3.71
6327 8185 5.549742 TTTTCTTCTGATGCCCAACAAAT 57.450 34.783 0.00 0.00 0.00 2.32
6349 8207 4.162509 GGTCAGCTTCTATTCCTGTACCTT 59.837 45.833 0.00 0.00 30.77 3.50
6351 8209 3.451178 TGGTCAGCTTCTATTCCTGTACC 59.549 47.826 0.00 0.00 32.41 3.34
6379 8240 1.343465 CAGTTACTGGTTCCGTGGACT 59.657 52.381 4.14 0.00 0.00 3.85
6394 8255 9.219603 CACTAGATTGGTTTTCAAGATCAGTTA 57.780 33.333 0.00 0.00 38.95 2.24
6417 8278 3.244875 TGGCCATTATCTTGTGACACACT 60.245 43.478 8.05 0.00 35.11 3.55
6422 8283 2.301346 CCCTGGCCATTATCTTGTGAC 58.699 52.381 5.51 0.00 0.00 3.67
6473 8337 2.668457 CACCACATACTCGTTCAGCTTC 59.332 50.000 0.00 0.00 0.00 3.86
6496 8360 4.037446 TGACACAAAGGGATAACAAGCAAC 59.963 41.667 0.00 0.00 0.00 4.17
6524 8391 1.464687 GCACTGATCAACATGTCGCAC 60.465 52.381 0.00 0.00 0.00 5.34
6743 8613 3.618752 CGGTGGACAGTGTATCCATCAAA 60.619 47.826 13.21 0.00 46.25 2.69
6776 8646 6.491062 CCATGGAGCCATCAATAAGAAACATA 59.509 38.462 5.56 0.00 33.90 2.29
6786 8656 3.839490 TCAAAAACCATGGAGCCATCAAT 59.161 39.130 21.47 0.00 33.90 2.57
6829 8699 4.090057 GCTCCGGCTTCGTTGCAC 62.090 66.667 0.00 0.00 35.22 4.57
6862 8732 3.360867 TGTGCTTCTTTCACAAGGGAAA 58.639 40.909 0.00 0.00 41.01 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.