Multiple sequence alignment - TraesCS1B01G357600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G357600 chr1B 100.000 2435 0 0 1 2435 587502298 587499864 0.000000e+00 4497.0
1 TraesCS1B01G357600 chr1B 82.739 533 35 12 1499 1987 652543636 652544155 2.890000e-114 422.0
2 TraesCS1B01G357600 chr1B 77.883 633 97 20 1 609 571712973 571712360 1.070000e-93 353.0
3 TraesCS1B01G357600 chr1B 95.395 152 5 2 2111 2260 181320358 181320509 8.700000e-60 241.0
4 TraesCS1B01G357600 chr1B 95.364 151 6 1 2111 2260 361014305 361014455 3.130000e-59 239.0
5 TraesCS1B01G357600 chr6A 86.263 1405 95 39 756 2084 16705098 16706480 0.000000e+00 1435.0
6 TraesCS1B01G357600 chr6A 86.054 968 69 27 768 1692 16655972 16655028 0.000000e+00 979.0
7 TraesCS1B01G357600 chr6D 85.826 1411 89 50 756 2084 16514360 16515741 0.000000e+00 1395.0
8 TraesCS1B01G357600 chr6D 86.129 1067 66 45 757 1758 16386788 16385739 0.000000e+00 1075.0
9 TraesCS1B01G357600 chr6D 84.636 729 64 33 866 1575 20813820 20813121 0.000000e+00 682.0
10 TraesCS1B01G357600 chr6D 85.948 306 25 6 1780 2084 16385669 16385381 6.540000e-81 311.0
11 TraesCS1B01G357600 chr6B 88.023 1052 69 30 741 1750 29044492 29045528 0.000000e+00 1192.0
12 TraesCS1B01G357600 chr6B 87.527 922 62 22 754 1632 28722210 28723121 0.000000e+00 1016.0
13 TraesCS1B01G357600 chr6B 88.942 832 65 9 755 1559 59298787 59299618 0.000000e+00 1002.0
14 TraesCS1B01G357600 chr6B 85.005 967 84 35 708 1632 28942261 28943208 0.000000e+00 926.0
15 TraesCS1B01G357600 chr6B 90.099 303 18 6 1782 2084 29045528 29045818 1.370000e-102 383.0
16 TraesCS1B01G357600 chr6B 79.216 587 81 27 22 584 625072997 625072428 1.060000e-98 370.0
17 TraesCS1B01G357600 chr6B 93.525 139 6 3 2111 2246 71865182 71865320 1.140000e-48 204.0
18 TraesCS1B01G357600 chr6B 78.914 313 50 7 312 609 2164601 2164290 5.310000e-47 198.0
19 TraesCS1B01G357600 chr6B 83.575 207 20 5 1879 2084 28723228 28723421 5.350000e-42 182.0
20 TraesCS1B01G357600 chr6B 83.092 207 23 4 1879 2084 28943315 28943510 6.920000e-41 178.0
21 TraesCS1B01G357600 chr3A 87.596 911 70 22 762 1632 66253826 66254733 0.000000e+00 1016.0
22 TraesCS1B01G357600 chr3A 82.143 196 16 6 1895 2084 66254805 66254987 1.510000e-32 150.0
23 TraesCS1B01G357600 chr5A 85.210 453 27 15 1 434 487750945 487750514 1.730000e-116 429.0
24 TraesCS1B01G357600 chr5A 78.584 551 75 28 65 587 639209146 639208611 8.400000e-85 324.0
25 TraesCS1B01G357600 chr1A 79.811 634 88 19 1 609 518813748 518813130 2.240000e-115 425.0
26 TraesCS1B01G357600 chr7B 98.077 156 3 0 2111 2266 23903362 23903207 3.090000e-69 272.0
27 TraesCS1B01G357600 chr7B 82.569 109 19 0 108 216 615740295 615740403 1.990000e-16 97.1
28 TraesCS1B01G357600 chr4A 94.702 151 7 1 2111 2260 728427034 728427184 1.460000e-57 233.0
29 TraesCS1B01G357600 chr7D 91.603 131 8 2 2111 2238 126467640 126467510 6.920000e-41 178.0
30 TraesCS1B01G357600 chr7D 86.957 115 13 2 1 114 25204789 25204676 7.070000e-26 128.0
31 TraesCS1B01G357600 chr4D 86.458 96 13 0 108 203 132197714 132197809 3.310000e-19 106.0
32 TraesCS1B01G357600 chr2A 86.022 93 9 4 108 196 489971050 489970958 1.990000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G357600 chr1B 587499864 587502298 2434 True 4497.0 4497 100.0000 1 2435 1 chr1B.!!$R2 2434
1 TraesCS1B01G357600 chr1B 652543636 652544155 519 False 422.0 422 82.7390 1499 1987 1 chr1B.!!$F3 488
2 TraesCS1B01G357600 chr1B 571712360 571712973 613 True 353.0 353 77.8830 1 609 1 chr1B.!!$R1 608
3 TraesCS1B01G357600 chr6A 16705098 16706480 1382 False 1435.0 1435 86.2630 756 2084 1 chr6A.!!$F1 1328
4 TraesCS1B01G357600 chr6A 16655028 16655972 944 True 979.0 979 86.0540 768 1692 1 chr6A.!!$R1 924
5 TraesCS1B01G357600 chr6D 16514360 16515741 1381 False 1395.0 1395 85.8260 756 2084 1 chr6D.!!$F1 1328
6 TraesCS1B01G357600 chr6D 16385381 16386788 1407 True 693.0 1075 86.0385 757 2084 2 chr6D.!!$R2 1327
7 TraesCS1B01G357600 chr6D 20813121 20813820 699 True 682.0 682 84.6360 866 1575 1 chr6D.!!$R1 709
8 TraesCS1B01G357600 chr6B 59298787 59299618 831 False 1002.0 1002 88.9420 755 1559 1 chr6B.!!$F1 804
9 TraesCS1B01G357600 chr6B 29044492 29045818 1326 False 787.5 1192 89.0610 741 2084 2 chr6B.!!$F5 1343
10 TraesCS1B01G357600 chr6B 28722210 28723421 1211 False 599.0 1016 85.5510 754 2084 2 chr6B.!!$F3 1330
11 TraesCS1B01G357600 chr6B 28942261 28943510 1249 False 552.0 926 84.0485 708 2084 2 chr6B.!!$F4 1376
12 TraesCS1B01G357600 chr6B 625072428 625072997 569 True 370.0 370 79.2160 22 584 1 chr6B.!!$R2 562
13 TraesCS1B01G357600 chr3A 66253826 66254987 1161 False 583.0 1016 84.8695 762 2084 2 chr3A.!!$F1 1322
14 TraesCS1B01G357600 chr5A 639208611 639209146 535 True 324.0 324 78.5840 65 587 1 chr5A.!!$R2 522
15 TraesCS1B01G357600 chr1A 518813130 518813748 618 True 425.0 425 79.8110 1 609 1 chr1A.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 730 0.251209 TAGTGAGAGACCTGTGGCGT 60.251 55.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2249 2530 0.035458 ATATAGGCTTGCAGGACGGC 59.965 55.0 0.0 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.207924 ACGGGAGTTCTCGCTGGTT 61.208 57.895 13.39 0.00 43.33 3.67
72 73 2.539688 GCTGGTTAGTTGTTTTTGCTGC 59.460 45.455 0.00 0.00 0.00 5.25
73 74 3.737972 GCTGGTTAGTTGTTTTTGCTGCT 60.738 43.478 0.00 0.00 0.00 4.24
78 79 2.294074 AGTTGTTTTTGCTGCTACCGA 58.706 42.857 0.00 0.00 0.00 4.69
86 87 1.438651 TGCTGCTACCGATGTTCAAC 58.561 50.000 0.00 0.00 0.00 3.18
115 118 4.218852 TGGAACCGGGTAAATTTTTGCTAG 59.781 41.667 6.32 0.00 0.00 3.42
124 127 7.139392 GGGTAAATTTTTGCTAGAATCGATCC 58.861 38.462 0.00 0.00 0.00 3.36
128 131 2.103153 TTGCTAGAATCGATCCCCCT 57.897 50.000 0.00 0.00 0.00 4.79
140 145 2.119495 GATCCCCCTGAGTTCTTGCTA 58.881 52.381 0.00 0.00 0.00 3.49
144 149 2.025887 CCCCCTGAGTTCTTGCTAATGT 60.026 50.000 0.00 0.00 0.00 2.71
187 194 0.965439 CAATTTTGCTGGAACCGGGA 59.035 50.000 6.32 0.00 0.00 5.14
188 195 1.550072 CAATTTTGCTGGAACCGGGAT 59.450 47.619 6.32 0.00 0.00 3.85
189 196 1.937191 ATTTTGCTGGAACCGGGATT 58.063 45.000 6.32 0.00 0.00 3.01
231 239 2.857483 TGGAGGATTTGTTGCTTTCGA 58.143 42.857 0.00 0.00 0.00 3.71
234 242 4.280677 TGGAGGATTTGTTGCTTTCGAAAT 59.719 37.500 11.70 0.00 0.00 2.17
236 244 6.015856 TGGAGGATTTGTTGCTTTCGAAATTA 60.016 34.615 11.70 0.39 0.00 1.40
244 252 8.581057 TTGTTGCTTTCGAAATTATTTTGCTA 57.419 26.923 11.70 3.71 0.00 3.49
252 260 4.963953 CGAAATTATTTTGCTAGGCACGAG 59.036 41.667 0.00 0.00 38.71 4.18
259 267 2.882777 CTAGGCACGAGCGCTGTG 60.883 66.667 25.81 25.81 43.41 3.66
260 268 3.342370 CTAGGCACGAGCGCTGTGA 62.342 63.158 30.94 16.76 43.41 3.58
261 269 3.626680 TAGGCACGAGCGCTGTGAC 62.627 63.158 30.94 29.44 45.98 3.67
287 312 4.683101 TGGTGCTCCAACCATGGTGAAA 62.683 50.000 20.60 5.64 45.43 2.69
291 316 2.340427 CCAACCATGGTGAAAGCGT 58.660 52.632 20.60 0.00 42.18 5.07
299 326 1.104577 TGGTGAAAGCGTTGGAACCC 61.105 55.000 0.00 0.00 36.92 4.11
302 329 3.263503 GAAAGCGTTGGAACCCGCC 62.264 63.158 9.95 0.00 46.39 6.13
303 330 4.572571 AAGCGTTGGAACCCGCCA 62.573 61.111 9.95 0.00 46.39 5.69
340 367 2.571757 CCTGGTTCGCGAGCTACA 59.428 61.111 22.36 11.84 0.00 2.74
341 368 1.080093 CCTGGTTCGCGAGCTACAA 60.080 57.895 22.36 4.55 0.00 2.41
345 372 1.280206 GGTTCGCGAGCTACAAACGT 61.280 55.000 22.36 0.00 0.00 3.99
385 413 1.708993 TTCAGCAGAAGGGTGCCAGT 61.709 55.000 0.00 0.00 45.20 4.00
388 418 2.034687 CAGAAGGGTGCCAGTGGG 59.965 66.667 12.15 0.00 37.18 4.61
435 465 4.636435 CGCAAGGGAACGGGGTGT 62.636 66.667 0.00 0.00 0.00 4.16
498 528 2.114638 GAGGACAGAGATGCTCGCT 58.885 57.895 0.00 0.00 35.36 4.93
505 535 1.880340 GAGATGCTCGCTGGGAACG 60.880 63.158 0.00 0.00 0.00 3.95
506 536 2.184322 GATGCTCGCTGGGAACGA 59.816 61.111 0.00 0.00 38.02 3.85
513 543 1.183030 TCGCTGGGAACGAGAAGGAA 61.183 55.000 0.00 0.00 33.96 3.36
516 546 1.267121 CTGGGAACGAGAAGGAAGGA 58.733 55.000 0.00 0.00 0.00 3.36
521 551 4.287585 TGGGAACGAGAAGGAAGGAATTTA 59.712 41.667 0.00 0.00 0.00 1.40
526 556 6.986904 ACGAGAAGGAAGGAATTTATGTTC 57.013 37.500 0.00 0.00 0.00 3.18
560 591 2.288763 GCGAGAGGAAGGAGATGATTCC 60.289 54.545 0.00 0.00 44.49 3.01
561 592 2.298729 CGAGAGGAAGGAGATGATTCCC 59.701 54.545 0.44 0.00 45.13 3.97
565 596 1.981495 GGAAGGAGATGATTCCCCGAT 59.019 52.381 0.00 0.00 39.29 4.18
566 597 2.373502 GGAAGGAGATGATTCCCCGATT 59.626 50.000 0.00 0.00 39.29 3.34
571 602 1.202855 AGATGATTCCCCGATTGGCTG 60.203 52.381 0.00 0.00 0.00 4.85
590 621 1.731709 TGCAAATCACCAGATCGAACG 59.268 47.619 0.00 0.00 31.90 3.95
591 622 1.062587 GCAAATCACCAGATCGAACGG 59.937 52.381 0.00 0.00 31.90 4.44
597 628 1.189524 ACCAGATCGAACGGTTGGGA 61.190 55.000 0.00 0.00 33.20 4.37
600 631 1.079405 GATCGAACGGTTGGGAGCA 60.079 57.895 0.00 0.00 0.00 4.26
624 655 3.671411 CCGAGCGGCGCCTAGTAT 61.671 66.667 30.40 8.89 39.11 2.12
625 656 2.335369 CGAGCGGCGCCTAGTATT 59.665 61.111 30.40 7.98 0.00 1.89
626 657 2.016704 CGAGCGGCGCCTAGTATTG 61.017 63.158 30.40 8.99 0.00 1.90
627 658 1.664965 GAGCGGCGCCTAGTATTGG 60.665 63.158 30.40 7.15 0.00 3.16
628 659 3.346606 GCGGCGCCTAGTATTGGC 61.347 66.667 26.68 14.22 46.42 4.52
639 670 6.132791 GCCTAGTATTGGCCTAAAAGAAAC 57.867 41.667 3.32 0.00 44.32 2.78
640 671 5.067413 GCCTAGTATTGGCCTAAAAGAAACC 59.933 44.000 3.32 0.00 44.32 3.27
641 672 6.184789 CCTAGTATTGGCCTAAAAGAAACCA 58.815 40.000 3.32 0.00 0.00 3.67
642 673 6.661805 CCTAGTATTGGCCTAAAAGAAACCAA 59.338 38.462 3.32 0.00 44.04 3.67
644 675 9.403583 CTAGTATTGGCCTAAAAGAAACCAATA 57.596 33.333 3.32 8.35 46.57 1.90
647 678 6.834168 TTGGCCTAAAAGAAACCAATAGAG 57.166 37.500 3.32 0.00 35.53 2.43
648 679 6.134535 TGGCCTAAAAGAAACCAATAGAGA 57.865 37.500 3.32 0.00 0.00 3.10
649 680 6.180472 TGGCCTAAAAGAAACCAATAGAGAG 58.820 40.000 3.32 0.00 0.00 3.20
650 681 6.012858 TGGCCTAAAAGAAACCAATAGAGAGA 60.013 38.462 3.32 0.00 0.00 3.10
651 682 6.540551 GGCCTAAAAGAAACCAATAGAGAGAG 59.459 42.308 0.00 0.00 0.00 3.20
652 683 7.331791 GCCTAAAAGAAACCAATAGAGAGAGA 58.668 38.462 0.00 0.00 0.00 3.10
653 684 7.279090 GCCTAAAAGAAACCAATAGAGAGAGAC 59.721 40.741 0.00 0.00 0.00 3.36
654 685 7.766738 CCTAAAAGAAACCAATAGAGAGAGACC 59.233 40.741 0.00 0.00 0.00 3.85
655 686 6.943899 AAAGAAACCAATAGAGAGAGACCT 57.056 37.500 0.00 0.00 0.00 3.85
656 687 6.538945 AAGAAACCAATAGAGAGAGACCTC 57.461 41.667 0.00 0.00 39.72 3.85
657 688 4.959839 AGAAACCAATAGAGAGAGACCTCC 59.040 45.833 0.00 0.00 40.30 4.30
658 689 4.618378 AACCAATAGAGAGAGACCTCCT 57.382 45.455 0.00 0.00 40.30 3.69
659 690 4.618378 ACCAATAGAGAGAGACCTCCTT 57.382 45.455 0.00 0.00 40.30 3.36
660 691 5.735733 ACCAATAGAGAGAGACCTCCTTA 57.264 43.478 0.00 0.00 40.30 2.69
661 692 6.093617 ACCAATAGAGAGAGACCTCCTTAA 57.906 41.667 0.00 0.00 40.30 1.85
662 693 6.503944 ACCAATAGAGAGAGACCTCCTTAAA 58.496 40.000 0.00 0.00 40.30 1.52
663 694 6.960542 ACCAATAGAGAGAGACCTCCTTAAAA 59.039 38.462 0.00 0.00 40.30 1.52
664 695 7.093245 ACCAATAGAGAGAGACCTCCTTAAAAC 60.093 40.741 0.00 0.00 40.30 2.43
665 696 7.125053 CCAATAGAGAGAGACCTCCTTAAAACT 59.875 40.741 0.00 0.00 40.30 2.66
666 697 9.191479 CAATAGAGAGAGACCTCCTTAAAACTA 57.809 37.037 0.00 0.00 40.30 2.24
667 698 9.771140 AATAGAGAGAGACCTCCTTAAAACTAA 57.229 33.333 0.00 0.00 40.30 2.24
668 699 9.771140 ATAGAGAGAGACCTCCTTAAAACTAAA 57.229 33.333 0.00 0.00 40.30 1.85
669 700 8.493787 AGAGAGAGACCTCCTTAAAACTAAAA 57.506 34.615 0.00 0.00 40.30 1.52
670 701 8.935741 AGAGAGAGACCTCCTTAAAACTAAAAA 58.064 33.333 0.00 0.00 40.30 1.94
695 726 7.678947 AAAAATCATTAGTGAGAGACCTGTG 57.321 36.000 0.00 0.00 37.87 3.66
696 727 5.350504 AATCATTAGTGAGAGACCTGTGG 57.649 43.478 0.00 0.00 37.87 4.17
697 728 2.497675 TCATTAGTGAGAGACCTGTGGC 59.502 50.000 0.00 0.00 0.00 5.01
698 729 0.888619 TTAGTGAGAGACCTGTGGCG 59.111 55.000 0.00 0.00 0.00 5.69
699 730 0.251209 TAGTGAGAGACCTGTGGCGT 60.251 55.000 0.00 0.00 0.00 5.68
700 731 1.373497 GTGAGAGACCTGTGGCGTG 60.373 63.158 0.00 0.00 0.00 5.34
701 732 1.832608 TGAGAGACCTGTGGCGTGT 60.833 57.895 0.00 0.00 0.00 4.49
702 733 1.373497 GAGAGACCTGTGGCGTGTG 60.373 63.158 0.00 0.00 0.00 3.82
703 734 3.044305 GAGACCTGTGGCGTGTGC 61.044 66.667 0.00 0.00 41.71 4.57
751 782 1.391577 GGAGGGAAGTCGTCTACCTC 58.608 60.000 18.55 18.55 42.34 3.85
752 783 1.064537 GGAGGGAAGTCGTCTACCTCT 60.065 57.143 22.79 8.17 42.51 3.69
773 804 2.564975 CCCGTGTACGTTCTCGCT 59.435 61.111 10.59 0.00 41.18 4.93
787 818 0.586802 CTCGCTACGTCATCGATCCA 59.413 55.000 0.00 0.00 40.62 3.41
866 897 2.814604 CCATCGATCCGAGGCACA 59.185 61.111 0.00 0.00 39.91 4.57
867 898 1.592669 CCATCGATCCGAGGCACAC 60.593 63.158 0.00 0.00 39.91 3.82
868 899 1.592669 CATCGATCCGAGGCACACC 60.593 63.158 0.00 0.00 39.91 4.16
967 1045 1.703411 CACACATCCCACCCAAACTT 58.297 50.000 0.00 0.00 0.00 2.66
985 1063 2.162338 TTAACCTCCCCACACGCTCG 62.162 60.000 0.00 0.00 0.00 5.03
1464 1602 2.483877 GTCGTTTCATGAGTTGATGGCA 59.516 45.455 0.00 0.00 33.34 4.92
1465 1603 3.127548 GTCGTTTCATGAGTTGATGGCAT 59.872 43.478 0.00 0.00 33.34 4.40
1539 1697 3.620427 TGCGGCCTTGAAGAAATAGTA 57.380 42.857 0.00 0.00 0.00 1.82
1598 1769 2.362397 TGTCGCTTCAGAGTTCAGACTT 59.638 45.455 0.00 0.00 35.88 3.01
1632 1819 5.437289 TGTTTATGTCAGCAAGTTTCTGG 57.563 39.130 2.59 0.00 32.63 3.86
1633 1820 5.129634 TGTTTATGTCAGCAAGTTTCTGGA 58.870 37.500 2.59 0.00 32.63 3.86
1634 1821 5.239306 TGTTTATGTCAGCAAGTTTCTGGAG 59.761 40.000 2.59 0.00 32.63 3.86
1635 1822 3.777106 ATGTCAGCAAGTTTCTGGAGA 57.223 42.857 2.59 0.00 32.63 3.71
1636 1823 3.117491 TGTCAGCAAGTTTCTGGAGAG 57.883 47.619 2.59 0.00 32.63 3.20
1637 1824 2.435805 TGTCAGCAAGTTTCTGGAGAGT 59.564 45.455 2.59 0.00 32.63 3.24
1638 1825 3.063485 GTCAGCAAGTTTCTGGAGAGTC 58.937 50.000 2.59 0.00 32.63 3.36
1639 1826 2.968574 TCAGCAAGTTTCTGGAGAGTCT 59.031 45.455 2.59 0.00 32.63 3.24
1640 1827 3.389329 TCAGCAAGTTTCTGGAGAGTCTT 59.611 43.478 2.59 0.00 32.63 3.01
1641 1828 3.497640 CAGCAAGTTTCTGGAGAGTCTTG 59.502 47.826 13.71 13.71 38.41 3.02
1642 1829 3.389329 AGCAAGTTTCTGGAGAGTCTTGA 59.611 43.478 18.56 0.00 38.04 3.02
1643 1830 4.041444 AGCAAGTTTCTGGAGAGTCTTGAT 59.959 41.667 18.56 13.29 38.04 2.57
1644 1831 4.153835 GCAAGTTTCTGGAGAGTCTTGATG 59.846 45.833 18.56 0.00 38.04 3.07
1645 1832 3.936564 AGTTTCTGGAGAGTCTTGATGC 58.063 45.455 0.00 0.00 0.00 3.91
1646 1833 3.006247 GTTTCTGGAGAGTCTTGATGCC 58.994 50.000 0.00 0.00 0.00 4.40
1647 1834 1.942776 TCTGGAGAGTCTTGATGCCA 58.057 50.000 0.00 0.00 0.00 4.92
1648 1835 2.475155 TCTGGAGAGTCTTGATGCCAT 58.525 47.619 0.00 0.00 0.00 4.40
1649 1836 3.646534 TCTGGAGAGTCTTGATGCCATA 58.353 45.455 0.00 0.00 0.00 2.74
1651 1838 5.397360 TCTGGAGAGTCTTGATGCCATATA 58.603 41.667 0.00 0.00 0.00 0.86
1654 1841 7.016957 TCTGGAGAGTCTTGATGCCATATAATT 59.983 37.037 0.00 0.00 0.00 1.40
1657 1844 9.678260 GGAGAGTCTTGATGCCATATAATTTAT 57.322 33.333 0.00 0.00 0.00 1.40
1713 1918 3.338249 TGTTTCCAAGTCTGCAGATAGC 58.662 45.455 21.47 7.24 45.96 2.97
1810 2075 3.386768 ACCTATATACTGTTGCTGCCG 57.613 47.619 0.00 0.00 0.00 5.69
1922 2196 1.363807 GCCAACAACAGCTTGACCC 59.636 57.895 0.00 0.00 0.00 4.46
1923 2197 2.041153 CCAACAACAGCTTGACCCC 58.959 57.895 0.00 0.00 0.00 4.95
1960 2234 6.674694 AGTCACAATGCATTAGATTCAGAC 57.325 37.500 12.53 11.55 0.00 3.51
1995 2269 9.314321 TGAGATAAATTAGAAGCTACTTTTCGG 57.686 33.333 0.00 0.00 0.00 4.30
1996 2270 9.315525 GAGATAAATTAGAAGCTACTTTTCGGT 57.684 33.333 0.00 0.00 0.00 4.69
1997 2271 9.668497 AGATAAATTAGAAGCTACTTTTCGGTT 57.332 29.630 0.00 0.00 0.00 4.44
2001 2275 4.727235 AGAAGCTACTTTTCGGTTTTCG 57.273 40.909 0.00 0.00 40.90 3.46
2002 2276 2.963498 AGCTACTTTTCGGTTTTCGC 57.037 45.000 0.00 0.00 39.05 4.70
2003 2277 2.215196 AGCTACTTTTCGGTTTTCGCA 58.785 42.857 0.00 0.00 39.05 5.10
2008 2282 4.833469 ACTTTTCGGTTTTCGCAAAAAG 57.167 36.364 0.00 0.00 42.89 2.27
2046 2323 1.734117 GCAGCGCACCCATGTTTTC 60.734 57.895 11.47 0.00 0.00 2.29
2092 2373 6.024552 TGGAACCATCATCTTAAAGTTTGC 57.975 37.500 0.00 0.00 0.00 3.68
2093 2374 5.047377 TGGAACCATCATCTTAAAGTTTGCC 60.047 40.000 0.00 0.00 0.00 4.52
2094 2375 4.701956 ACCATCATCTTAAAGTTTGCCG 57.298 40.909 0.00 0.00 0.00 5.69
2095 2376 4.079253 ACCATCATCTTAAAGTTTGCCGT 58.921 39.130 0.00 0.00 0.00 5.68
2096 2377 4.522789 ACCATCATCTTAAAGTTTGCCGTT 59.477 37.500 0.00 0.00 0.00 4.44
2097 2378 4.858692 CCATCATCTTAAAGTTTGCCGTTG 59.141 41.667 0.00 0.00 0.00 4.10
2098 2379 3.896122 TCATCTTAAAGTTTGCCGTTGC 58.104 40.909 0.00 0.00 38.26 4.17
2099 2380 3.568007 TCATCTTAAAGTTTGCCGTTGCT 59.432 39.130 0.00 0.00 38.71 3.91
2100 2381 3.347958 TCTTAAAGTTTGCCGTTGCTG 57.652 42.857 0.00 0.00 38.71 4.41
2101 2382 1.786579 CTTAAAGTTTGCCGTTGCTGC 59.213 47.619 0.00 0.00 38.71 5.25
2102 2383 1.028905 TAAAGTTTGCCGTTGCTGCT 58.971 45.000 0.00 0.00 38.71 4.24
2103 2384 1.028905 AAAGTTTGCCGTTGCTGCTA 58.971 45.000 0.00 0.00 38.71 3.49
2104 2385 1.247567 AAGTTTGCCGTTGCTGCTAT 58.752 45.000 0.00 0.00 38.71 2.97
2105 2386 1.247567 AGTTTGCCGTTGCTGCTATT 58.752 45.000 0.00 0.00 38.71 1.73
2106 2387 1.068333 AGTTTGCCGTTGCTGCTATTG 60.068 47.619 0.00 0.00 38.71 1.90
2107 2388 1.068610 GTTTGCCGTTGCTGCTATTGA 60.069 47.619 0.00 0.00 38.71 2.57
2108 2389 0.804364 TTGCCGTTGCTGCTATTGAG 59.196 50.000 0.00 0.00 38.71 3.02
2109 2390 0.321564 TGCCGTTGCTGCTATTGAGT 60.322 50.000 0.00 0.00 38.71 3.41
2110 2391 0.804989 GCCGTTGCTGCTATTGAGTT 59.195 50.000 0.00 0.00 33.53 3.01
2111 2392 2.006888 GCCGTTGCTGCTATTGAGTTA 58.993 47.619 0.00 0.00 33.53 2.24
2112 2393 2.030946 GCCGTTGCTGCTATTGAGTTAG 59.969 50.000 0.00 0.00 33.53 2.34
2113 2394 2.609459 CCGTTGCTGCTATTGAGTTAGG 59.391 50.000 0.00 0.00 0.00 2.69
2114 2395 2.609459 CGTTGCTGCTATTGAGTTAGGG 59.391 50.000 0.00 0.00 0.00 3.53
2115 2396 2.945668 GTTGCTGCTATTGAGTTAGGGG 59.054 50.000 0.00 0.00 0.00 4.79
2116 2397 2.196595 TGCTGCTATTGAGTTAGGGGT 58.803 47.619 0.00 0.00 0.00 4.95
2117 2398 2.092968 TGCTGCTATTGAGTTAGGGGTG 60.093 50.000 0.00 0.00 0.00 4.61
2118 2399 2.565841 CTGCTATTGAGTTAGGGGTGC 58.434 52.381 0.00 0.00 0.00 5.01
2119 2400 1.912731 TGCTATTGAGTTAGGGGTGCA 59.087 47.619 0.00 0.00 0.00 4.57
2120 2401 2.307392 TGCTATTGAGTTAGGGGTGCAA 59.693 45.455 0.00 0.00 0.00 4.08
2121 2402 2.945668 GCTATTGAGTTAGGGGTGCAAG 59.054 50.000 0.00 0.00 0.00 4.01
2122 2403 2.514458 ATTGAGTTAGGGGTGCAAGG 57.486 50.000 0.00 0.00 0.00 3.61
2123 2404 0.251165 TTGAGTTAGGGGTGCAAGGC 60.251 55.000 0.00 0.00 0.00 4.35
2124 2405 1.745489 GAGTTAGGGGTGCAAGGCG 60.745 63.158 0.00 0.00 0.00 5.52
2125 2406 2.750237 GTTAGGGGTGCAAGGCGG 60.750 66.667 0.00 0.00 0.00 6.13
2126 2407 4.733542 TTAGGGGTGCAAGGCGGC 62.734 66.667 0.00 0.00 0.00 6.53
2156 2437 2.832672 GGCACGCTTCCTATTCAAAG 57.167 50.000 0.00 0.00 0.00 2.77
2157 2438 1.202188 GGCACGCTTCCTATTCAAAGC 60.202 52.381 0.00 0.00 43.49 3.51
2158 2439 1.740025 GCACGCTTCCTATTCAAAGCT 59.260 47.619 5.65 0.00 44.49 3.74
2159 2440 2.936498 GCACGCTTCCTATTCAAAGCTA 59.064 45.455 5.65 0.00 44.49 3.32
2160 2441 3.374058 GCACGCTTCCTATTCAAAGCTAA 59.626 43.478 5.65 0.00 44.49 3.09
2161 2442 4.142687 GCACGCTTCCTATTCAAAGCTAAA 60.143 41.667 5.65 0.00 44.49 1.85
2162 2443 5.619086 GCACGCTTCCTATTCAAAGCTAAAA 60.619 40.000 5.65 0.00 44.49 1.52
2163 2444 6.378582 CACGCTTCCTATTCAAAGCTAAAAA 58.621 36.000 5.65 0.00 44.49 1.94
2204 2485 9.959749 AAATTAAACTACGTCACATCAATTTGT 57.040 25.926 0.00 0.00 0.00 2.83
2207 2488 7.724305 AAACTACGTCACATCAATTTGTACT 57.276 32.000 0.00 0.00 0.00 2.73
2208 2489 8.821147 AAACTACGTCACATCAATTTGTACTA 57.179 30.769 0.00 0.00 0.00 1.82
2209 2490 8.462143 AACTACGTCACATCAATTTGTACTAG 57.538 34.615 0.00 0.00 0.00 2.57
2210 2491 5.779806 ACGTCACATCAATTTGTACTAGC 57.220 39.130 0.00 0.00 0.00 3.42
2211 2492 5.479306 ACGTCACATCAATTTGTACTAGCT 58.521 37.500 0.00 0.00 0.00 3.32
2212 2493 5.348724 ACGTCACATCAATTTGTACTAGCTG 59.651 40.000 0.00 0.00 0.00 4.24
2213 2494 5.348724 CGTCACATCAATTTGTACTAGCTGT 59.651 40.000 0.00 0.00 0.00 4.40
2214 2495 6.537566 GTCACATCAATTTGTACTAGCTGTG 58.462 40.000 0.00 0.00 34.31 3.66
2215 2496 6.147821 GTCACATCAATTTGTACTAGCTGTGT 59.852 38.462 0.00 0.00 34.56 3.72
2216 2497 6.147656 TCACATCAATTTGTACTAGCTGTGTG 59.852 38.462 0.00 0.00 34.56 3.82
2217 2498 5.106555 ACATCAATTTGTACTAGCTGTGTGC 60.107 40.000 0.00 0.00 43.29 4.57
2226 2507 2.046507 GCTGTGTGCTAGCTGGCT 60.047 61.111 23.43 0.00 38.14 4.75
2227 2508 2.396955 GCTGTGTGCTAGCTGGCTG 61.397 63.158 23.43 10.22 38.14 4.85
2228 2509 1.004080 CTGTGTGCTAGCTGGCTGT 60.004 57.895 23.43 0.00 0.00 4.40
2229 2510 0.604780 CTGTGTGCTAGCTGGCTGTT 60.605 55.000 23.43 0.00 0.00 3.16
2230 2511 0.179020 TGTGTGCTAGCTGGCTGTTT 60.179 50.000 23.43 0.00 0.00 2.83
2231 2512 0.954452 GTGTGCTAGCTGGCTGTTTT 59.046 50.000 23.43 0.00 0.00 2.43
2232 2513 0.953727 TGTGCTAGCTGGCTGTTTTG 59.046 50.000 23.43 0.00 0.00 2.44
2233 2514 0.387750 GTGCTAGCTGGCTGTTTTGC 60.388 55.000 23.43 1.33 0.00 3.68
2234 2515 1.154150 GCTAGCTGGCTGTTTTGCG 60.154 57.895 15.78 0.00 0.00 4.85
2235 2516 1.503542 CTAGCTGGCTGTTTTGCGG 59.496 57.895 5.25 0.00 0.00 5.69
2236 2517 1.926511 CTAGCTGGCTGTTTTGCGGG 61.927 60.000 5.25 0.00 0.00 6.13
2237 2518 2.404566 TAGCTGGCTGTTTTGCGGGA 62.405 55.000 5.25 0.00 0.00 5.14
2238 2519 2.639327 GCTGGCTGTTTTGCGGGAT 61.639 57.895 0.00 0.00 0.00 3.85
2239 2520 1.966762 CTGGCTGTTTTGCGGGATT 59.033 52.632 0.00 0.00 0.00 3.01
2240 2521 0.318120 CTGGCTGTTTTGCGGGATTT 59.682 50.000 0.00 0.00 0.00 2.17
2241 2522 0.755686 TGGCTGTTTTGCGGGATTTT 59.244 45.000 0.00 0.00 0.00 1.82
2242 2523 1.147473 GGCTGTTTTGCGGGATTTTG 58.853 50.000 0.00 0.00 0.00 2.44
2243 2524 0.512518 GCTGTTTTGCGGGATTTTGC 59.487 50.000 0.00 0.00 0.00 3.68
2244 2525 0.783579 CTGTTTTGCGGGATTTTGCG 59.216 50.000 0.00 0.00 0.00 4.85
2245 2526 0.598680 TGTTTTGCGGGATTTTGCGG 60.599 50.000 0.00 0.00 0.00 5.69
2246 2527 0.319125 GTTTTGCGGGATTTTGCGGA 60.319 50.000 0.00 0.00 0.00 5.54
2247 2528 0.038709 TTTTGCGGGATTTTGCGGAG 60.039 50.000 0.00 0.00 0.00 4.63
2265 2546 4.451150 CGCCGTCCTGCAAGCCTA 62.451 66.667 0.00 0.00 0.00 3.93
2266 2547 2.190578 GCCGTCCTGCAAGCCTAT 59.809 61.111 0.00 0.00 0.00 2.57
2267 2548 1.445942 GCCGTCCTGCAAGCCTATA 59.554 57.895 0.00 0.00 0.00 1.31
2268 2549 0.035458 GCCGTCCTGCAAGCCTATAT 59.965 55.000 0.00 0.00 0.00 0.86
2269 2550 1.543429 GCCGTCCTGCAAGCCTATATT 60.543 52.381 0.00 0.00 0.00 1.28
2270 2551 2.146342 CCGTCCTGCAAGCCTATATTG 58.854 52.381 0.00 0.00 0.00 1.90
2271 2552 2.224281 CCGTCCTGCAAGCCTATATTGA 60.224 50.000 0.00 0.00 0.00 2.57
2272 2553 3.062763 CGTCCTGCAAGCCTATATTGAG 58.937 50.000 0.00 0.00 0.00 3.02
2273 2554 3.493350 CGTCCTGCAAGCCTATATTGAGT 60.493 47.826 0.00 0.00 0.00 3.41
2274 2555 4.262036 CGTCCTGCAAGCCTATATTGAGTA 60.262 45.833 0.00 0.00 0.00 2.59
2275 2556 5.567623 CGTCCTGCAAGCCTATATTGAGTAT 60.568 44.000 0.00 0.00 0.00 2.12
2276 2557 6.234177 GTCCTGCAAGCCTATATTGAGTATT 58.766 40.000 0.00 0.00 0.00 1.89
2277 2558 6.148480 GTCCTGCAAGCCTATATTGAGTATTG 59.852 42.308 0.00 0.00 0.00 1.90
2278 2559 6.043127 TCCTGCAAGCCTATATTGAGTATTGA 59.957 38.462 0.00 0.00 0.00 2.57
2279 2560 6.370994 CCTGCAAGCCTATATTGAGTATTGAG 59.629 42.308 0.00 0.00 0.00 3.02
2280 2561 7.066307 TGCAAGCCTATATTGAGTATTGAGA 57.934 36.000 0.00 0.00 0.00 3.27
2281 2562 6.931281 TGCAAGCCTATATTGAGTATTGAGAC 59.069 38.462 0.00 0.00 0.00 3.36
2282 2563 6.931281 GCAAGCCTATATTGAGTATTGAGACA 59.069 38.462 0.00 0.00 0.00 3.41
2283 2564 7.095439 GCAAGCCTATATTGAGTATTGAGACAC 60.095 40.741 0.00 0.00 0.00 3.67
2284 2565 6.998802 AGCCTATATTGAGTATTGAGACACC 58.001 40.000 0.00 0.00 0.00 4.16
2285 2566 6.784969 AGCCTATATTGAGTATTGAGACACCT 59.215 38.462 0.00 0.00 0.00 4.00
2286 2567 6.870965 GCCTATATTGAGTATTGAGACACCTG 59.129 42.308 0.00 0.00 0.00 4.00
2287 2568 7.255977 GCCTATATTGAGTATTGAGACACCTGA 60.256 40.741 0.00 0.00 0.00 3.86
2288 2569 8.303156 CCTATATTGAGTATTGAGACACCTGAG 58.697 40.741 0.00 0.00 0.00 3.35
2289 2570 7.667575 ATATTGAGTATTGAGACACCTGAGT 57.332 36.000 0.00 0.00 0.00 3.41
2290 2571 5.808366 TTGAGTATTGAGACACCTGAGTT 57.192 39.130 0.00 0.00 0.00 3.01
2291 2572 5.808366 TGAGTATTGAGACACCTGAGTTT 57.192 39.130 0.00 0.00 0.00 2.66
2292 2573 6.174720 TGAGTATTGAGACACCTGAGTTTT 57.825 37.500 0.00 0.00 0.00 2.43
2293 2574 6.591935 TGAGTATTGAGACACCTGAGTTTTT 58.408 36.000 0.00 0.00 0.00 1.94
2353 2634 9.895138 TTTTCTTTGTTCTACTACTAACTTGGT 57.105 29.630 0.00 0.00 0.00 3.67
2365 2646 8.617290 ACTACTAACTTGGTAATTTGTGAAGG 57.383 34.615 0.00 0.00 0.00 3.46
2366 2647 8.215736 ACTACTAACTTGGTAATTTGTGAAGGT 58.784 33.333 0.00 0.00 0.00 3.50
2367 2648 7.272037 ACTAACTTGGTAATTTGTGAAGGTG 57.728 36.000 0.00 0.00 0.00 4.00
2368 2649 4.584327 ACTTGGTAATTTGTGAAGGTGC 57.416 40.909 0.00 0.00 0.00 5.01
2369 2650 3.957497 ACTTGGTAATTTGTGAAGGTGCA 59.043 39.130 0.00 0.00 0.00 4.57
2370 2651 4.404073 ACTTGGTAATTTGTGAAGGTGCAA 59.596 37.500 0.00 0.00 0.00 4.08
2371 2652 5.105146 ACTTGGTAATTTGTGAAGGTGCAAA 60.105 36.000 0.00 0.00 38.68 3.68
2372 2653 4.942852 TGGTAATTTGTGAAGGTGCAAAG 58.057 39.130 0.00 0.00 37.89 2.77
2373 2654 4.404073 TGGTAATTTGTGAAGGTGCAAAGT 59.596 37.500 0.00 0.00 37.89 2.66
2374 2655 5.105146 TGGTAATTTGTGAAGGTGCAAAGTT 60.105 36.000 0.00 0.00 37.89 2.66
2375 2656 5.815222 GGTAATTTGTGAAGGTGCAAAGTTT 59.185 36.000 0.00 0.00 37.89 2.66
2376 2657 6.315144 GGTAATTTGTGAAGGTGCAAAGTTTT 59.685 34.615 0.00 0.00 37.89 2.43
2377 2658 6.816134 AATTTGTGAAGGTGCAAAGTTTTT 57.184 29.167 0.00 0.00 37.89 1.94
2378 2659 5.854431 TTTGTGAAGGTGCAAAGTTTTTC 57.146 34.783 0.00 0.00 31.82 2.29
2379 2660 4.799564 TGTGAAGGTGCAAAGTTTTTCT 57.200 36.364 0.00 0.00 0.00 2.52
2380 2661 5.906113 TGTGAAGGTGCAAAGTTTTTCTA 57.094 34.783 0.00 0.00 0.00 2.10
2381 2662 5.646606 TGTGAAGGTGCAAAGTTTTTCTAC 58.353 37.500 0.00 0.00 0.00 2.59
2382 2663 5.417580 TGTGAAGGTGCAAAGTTTTTCTACT 59.582 36.000 0.00 0.00 0.00 2.57
2383 2664 5.743872 GTGAAGGTGCAAAGTTTTTCTACTG 59.256 40.000 0.00 0.00 0.00 2.74
2384 2665 5.650266 TGAAGGTGCAAAGTTTTTCTACTGA 59.350 36.000 0.00 0.00 0.00 3.41
2385 2666 6.321181 TGAAGGTGCAAAGTTTTTCTACTGAT 59.679 34.615 0.00 0.00 0.00 2.90
2386 2667 6.715347 AGGTGCAAAGTTTTTCTACTGATT 57.285 33.333 0.00 0.00 0.00 2.57
2387 2668 6.739112 AGGTGCAAAGTTTTTCTACTGATTC 58.261 36.000 0.00 0.00 0.00 2.52
2388 2669 6.321181 AGGTGCAAAGTTTTTCTACTGATTCA 59.679 34.615 0.00 0.00 0.00 2.57
2389 2670 7.014615 AGGTGCAAAGTTTTTCTACTGATTCAT 59.985 33.333 0.00 0.00 0.00 2.57
2390 2671 7.653311 GGTGCAAAGTTTTTCTACTGATTCATT 59.347 33.333 0.00 0.00 0.00 2.57
2391 2672 9.034544 GTGCAAAGTTTTTCTACTGATTCATTT 57.965 29.630 0.00 0.00 0.00 2.32
2392 2673 9.248291 TGCAAAGTTTTTCTACTGATTCATTTC 57.752 29.630 0.00 0.00 0.00 2.17
2393 2674 9.468532 GCAAAGTTTTTCTACTGATTCATTTCT 57.531 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.319555 CAGCGAGAACTCCCGTCAAA 60.320 55.000 0.00 0.00 0.00 2.69
37 38 2.636412 CCAGCGAGAACTCCCGTCA 61.636 63.158 0.00 0.00 0.00 4.35
38 39 2.156051 AACCAGCGAGAACTCCCGTC 62.156 60.000 0.00 0.00 0.00 4.79
50 51 2.788786 CAGCAAAAACAACTAACCAGCG 59.211 45.455 0.00 0.00 0.00 5.18
57 58 3.468770 TCGGTAGCAGCAAAAACAACTA 58.531 40.909 0.00 0.00 0.00 2.24
72 73 3.120199 CCAGCAAAGTTGAACATCGGTAG 60.120 47.826 0.00 0.00 0.00 3.18
73 74 2.811431 CCAGCAAAGTTGAACATCGGTA 59.189 45.455 0.00 0.00 0.00 4.02
78 79 2.034558 CGGTTCCAGCAAAGTTGAACAT 59.965 45.455 0.00 0.00 39.02 2.71
86 87 1.611519 TTTACCCGGTTCCAGCAAAG 58.388 50.000 0.00 0.00 0.00 2.77
115 118 2.043227 AGAACTCAGGGGGATCGATTC 58.957 52.381 0.00 0.00 0.00 2.52
124 127 3.012518 CACATTAGCAAGAACTCAGGGG 58.987 50.000 0.00 0.00 0.00 4.79
128 131 6.449635 AAACAACACATTAGCAAGAACTCA 57.550 33.333 0.00 0.00 0.00 3.41
140 145 3.530535 GGTTCCAGCAAAACAACACATT 58.469 40.909 0.00 0.00 0.00 2.71
144 149 0.457851 CCGGTTCCAGCAAAACAACA 59.542 50.000 0.00 0.00 0.00 3.33
231 239 4.672409 GCTCGTGCCTAGCAAAATAATTT 58.328 39.130 0.00 0.00 41.47 1.82
234 242 1.663643 CGCTCGTGCCTAGCAAAATAA 59.336 47.619 3.52 0.00 41.47 1.40
236 244 1.982073 GCGCTCGTGCCTAGCAAAAT 61.982 55.000 0.00 0.00 41.47 1.82
255 263 4.969196 AGCACCACCGCGTCACAG 62.969 66.667 4.92 0.00 36.85 3.66
256 264 4.961511 GAGCACCACCGCGTCACA 62.962 66.667 4.92 0.00 36.85 3.58
259 267 4.980805 TTGGAGCACCACCGCGTC 62.981 66.667 0.85 0.00 46.80 5.19
262 270 4.947147 TGGTTGGAGCACCACCGC 62.947 66.667 0.85 0.00 46.80 5.68
309 336 2.044252 CAGGCCATTGCAGCTCCT 60.044 61.111 5.01 0.00 40.13 3.69
361 388 1.815408 GCACCCTTCTGCTGAAGTTCA 60.815 52.381 25.92 5.25 46.07 3.18
364 391 1.073897 GGCACCCTTCTGCTGAAGT 59.926 57.895 25.92 11.41 46.07 3.01
381 409 2.260434 CACCGTCGTACCCACTGG 59.740 66.667 0.00 0.00 37.80 4.00
385 413 3.993584 GCACCACCGTCGTACCCA 61.994 66.667 0.00 0.00 0.00 4.51
388 418 3.110178 GCAGCACCACCGTCGTAC 61.110 66.667 0.00 0.00 0.00 3.67
474 504 2.444895 ATCTCTGTCCTCGCCCCC 60.445 66.667 0.00 0.00 0.00 5.40
475 505 2.818132 CATCTCTGTCCTCGCCCC 59.182 66.667 0.00 0.00 0.00 5.80
484 514 1.260538 TTCCCAGCGAGCATCTCTGT 61.261 55.000 0.00 0.00 46.09 3.41
498 528 1.724545 TTCCTTCCTTCTCGTTCCCA 58.275 50.000 0.00 0.00 0.00 4.37
505 535 5.502544 CGCGAACATAAATTCCTTCCTTCTC 60.503 44.000 0.00 0.00 0.00 2.87
506 536 4.332819 CGCGAACATAAATTCCTTCCTTCT 59.667 41.667 0.00 0.00 0.00 2.85
513 543 3.126343 GGTCAACGCGAACATAAATTCCT 59.874 43.478 15.93 0.00 0.00 3.36
516 546 4.491234 TTGGTCAACGCGAACATAAATT 57.509 36.364 15.93 0.00 42.28 1.82
521 551 0.040425 GCTTTGGTCAACGCGAACAT 60.040 50.000 15.93 0.00 42.28 2.71
560 591 0.179129 GTGATTTGCAGCCAATCGGG 60.179 55.000 13.17 0.00 40.85 5.14
561 592 0.179129 GGTGATTTGCAGCCAATCGG 60.179 55.000 13.17 0.00 39.07 4.18
565 596 1.820519 GATCTGGTGATTTGCAGCCAA 59.179 47.619 0.00 0.00 44.28 4.52
566 597 1.466856 GATCTGGTGATTTGCAGCCA 58.533 50.000 0.00 0.00 44.28 4.75
571 602 1.062587 CCGTTCGATCTGGTGATTTGC 59.937 52.381 0.00 0.00 32.19 3.68
609 640 1.664965 CCAATACTAGGCGCCGCTC 60.665 63.158 23.20 0.00 0.00 5.03
610 641 2.421739 CCAATACTAGGCGCCGCT 59.578 61.111 23.20 7.21 0.00 5.52
611 642 3.346606 GCCAATACTAGGCGCCGC 61.347 66.667 23.20 12.25 43.15 6.53
617 648 6.184789 TGGTTTCTTTTAGGCCAATACTAGG 58.815 40.000 5.01 0.00 0.00 3.02
618 649 7.696992 TTGGTTTCTTTTAGGCCAATACTAG 57.303 36.000 5.01 0.00 34.67 2.57
619 650 9.403583 CTATTGGTTTCTTTTAGGCCAATACTA 57.596 33.333 5.01 0.00 45.00 1.82
620 651 8.113462 TCTATTGGTTTCTTTTAGGCCAATACT 58.887 33.333 5.01 0.00 45.00 2.12
621 652 8.288689 TCTATTGGTTTCTTTTAGGCCAATAC 57.711 34.615 5.01 0.00 45.00 1.89
622 653 8.333235 TCTCTATTGGTTTCTTTTAGGCCAATA 58.667 33.333 5.01 12.07 45.00 1.90
624 655 6.548321 TCTCTATTGGTTTCTTTTAGGCCAA 58.452 36.000 5.01 0.00 42.46 4.52
625 656 6.012858 TCTCTCTATTGGTTTCTTTTAGGCCA 60.013 38.462 5.01 0.00 0.00 5.36
626 657 6.415573 TCTCTCTATTGGTTTCTTTTAGGCC 58.584 40.000 0.00 0.00 0.00 5.19
627 658 7.279090 GTCTCTCTCTATTGGTTTCTTTTAGGC 59.721 40.741 0.00 0.00 0.00 3.93
628 659 7.766738 GGTCTCTCTCTATTGGTTTCTTTTAGG 59.233 40.741 0.00 0.00 0.00 2.69
629 660 8.536175 AGGTCTCTCTCTATTGGTTTCTTTTAG 58.464 37.037 0.00 0.00 0.00 1.85
630 661 8.437274 AGGTCTCTCTCTATTGGTTTCTTTTA 57.563 34.615 0.00 0.00 0.00 1.52
631 662 7.323052 AGGTCTCTCTCTATTGGTTTCTTTT 57.677 36.000 0.00 0.00 0.00 2.27
632 663 6.070481 GGAGGTCTCTCTCTATTGGTTTCTTT 60.070 42.308 0.00 0.00 39.86 2.52
633 664 5.423931 GGAGGTCTCTCTCTATTGGTTTCTT 59.576 44.000 0.00 0.00 39.86 2.52
634 665 4.959839 GGAGGTCTCTCTCTATTGGTTTCT 59.040 45.833 0.00 0.00 39.86 2.52
635 666 4.959839 AGGAGGTCTCTCTCTATTGGTTTC 59.040 45.833 0.00 0.00 39.86 2.78
636 667 4.954089 AGGAGGTCTCTCTCTATTGGTTT 58.046 43.478 0.00 0.00 39.86 3.27
637 668 4.618378 AGGAGGTCTCTCTCTATTGGTT 57.382 45.455 0.00 0.00 39.86 3.67
638 669 4.618378 AAGGAGGTCTCTCTCTATTGGT 57.382 45.455 0.00 0.00 39.86 3.67
639 670 7.125053 AGTTTTAAGGAGGTCTCTCTCTATTGG 59.875 40.741 0.00 0.00 39.86 3.16
640 671 8.073467 AGTTTTAAGGAGGTCTCTCTCTATTG 57.927 38.462 0.00 0.00 39.86 1.90
641 672 9.771140 TTAGTTTTAAGGAGGTCTCTCTCTATT 57.229 33.333 0.00 0.00 39.86 1.73
642 673 9.771140 TTTAGTTTTAAGGAGGTCTCTCTCTAT 57.229 33.333 0.00 0.00 39.86 1.98
643 674 9.597681 TTTTAGTTTTAAGGAGGTCTCTCTCTA 57.402 33.333 0.00 0.00 39.86 2.43
644 675 8.493787 TTTTAGTTTTAAGGAGGTCTCTCTCT 57.506 34.615 0.00 0.00 39.86 3.10
671 702 6.656693 CCACAGGTCTCTCACTAATGATTTTT 59.343 38.462 0.00 0.00 33.22 1.94
672 703 6.176183 CCACAGGTCTCTCACTAATGATTTT 58.824 40.000 0.00 0.00 33.22 1.82
673 704 5.738909 CCACAGGTCTCTCACTAATGATTT 58.261 41.667 0.00 0.00 33.22 2.17
674 705 4.383552 GCCACAGGTCTCTCACTAATGATT 60.384 45.833 0.00 0.00 33.22 2.57
675 706 3.133721 GCCACAGGTCTCTCACTAATGAT 59.866 47.826 0.00 0.00 33.22 2.45
676 707 2.497675 GCCACAGGTCTCTCACTAATGA 59.502 50.000 0.00 0.00 0.00 2.57
677 708 2.736719 CGCCACAGGTCTCTCACTAATG 60.737 54.545 0.00 0.00 0.00 1.90
678 709 1.478510 CGCCACAGGTCTCTCACTAAT 59.521 52.381 0.00 0.00 0.00 1.73
679 710 0.888619 CGCCACAGGTCTCTCACTAA 59.111 55.000 0.00 0.00 0.00 2.24
680 711 0.251209 ACGCCACAGGTCTCTCACTA 60.251 55.000 0.00 0.00 0.00 2.74
681 712 1.531840 ACGCCACAGGTCTCTCACT 60.532 57.895 0.00 0.00 0.00 3.41
682 713 1.373497 CACGCCACAGGTCTCTCAC 60.373 63.158 0.00 0.00 0.00 3.51
683 714 1.832608 ACACGCCACAGGTCTCTCA 60.833 57.895 0.00 0.00 0.00 3.27
684 715 1.373497 CACACGCCACAGGTCTCTC 60.373 63.158 0.00 0.00 0.00 3.20
685 716 2.737180 CACACGCCACAGGTCTCT 59.263 61.111 0.00 0.00 0.00 3.10
686 717 3.044305 GCACACGCCACAGGTCTC 61.044 66.667 0.00 0.00 0.00 3.36
703 734 2.186826 GGATCGATGGCCGGTTTGG 61.187 63.158 0.54 0.00 42.50 3.28
704 735 2.534019 CGGATCGATGGCCGGTTTG 61.534 63.158 15.81 0.00 43.67 2.93
705 736 2.203015 CGGATCGATGGCCGGTTT 60.203 61.111 15.81 0.00 43.67 3.27
726 757 4.194720 CGACTTCCCTCCGGAGCG 62.195 72.222 26.87 18.55 40.10 5.03
732 763 1.064537 AGAGGTAGACGACTTCCCTCC 60.065 57.143 21.10 7.85 40.67 4.30
734 765 1.956159 GCAGAGGTAGACGACTTCCCT 60.956 57.143 6.92 6.27 34.70 4.20
751 782 3.475774 GAACGTACACGGGCGCAG 61.476 66.667 10.83 4.90 44.95 5.18
752 783 3.902162 GAGAACGTACACGGGCGCA 62.902 63.158 10.83 0.00 44.95 6.09
773 804 1.357690 GGCGTGGATCGATGACGTA 59.642 57.895 21.39 0.00 42.86 3.57
813 844 2.480555 GTTCGGTGATGCTTGGCG 59.519 61.111 0.00 0.00 0.00 5.69
814 845 2.480555 CGTTCGGTGATGCTTGGC 59.519 61.111 0.00 0.00 0.00 4.52
866 897 0.043485 GGAGGAAGGAGGAAGGAGGT 59.957 60.000 0.00 0.00 0.00 3.85
867 898 0.692756 GGGAGGAAGGAGGAAGGAGG 60.693 65.000 0.00 0.00 0.00 4.30
868 899 1.045911 CGGGAGGAAGGAGGAAGGAG 61.046 65.000 0.00 0.00 0.00 3.69
869 900 1.001760 CGGGAGGAAGGAGGAAGGA 59.998 63.158 0.00 0.00 0.00 3.36
871 902 1.268283 AAGCGGGAGGAAGGAGGAAG 61.268 60.000 0.00 0.00 0.00 3.46
872 903 1.229529 AAGCGGGAGGAAGGAGGAA 60.230 57.895 0.00 0.00 0.00 3.36
949 1024 3.227614 GTTAAGTTTGGGTGGGATGTGT 58.772 45.455 0.00 0.00 0.00 3.72
967 1045 2.642254 CGAGCGTGTGGGGAGGTTA 61.642 63.158 0.00 0.00 0.00 2.85
985 1063 3.443045 CATGGGTGCCGCTGGTTC 61.443 66.667 0.00 0.00 0.00 3.62
1464 1602 2.176889 ACTGCCAACTACCTACACGAT 58.823 47.619 0.00 0.00 0.00 3.73
1465 1603 1.624336 ACTGCCAACTACCTACACGA 58.376 50.000 0.00 0.00 0.00 4.35
1539 1697 6.074195 CGAACATTGATTCAAACAGCAACATT 60.074 34.615 2.68 0.00 0.00 2.71
1598 1769 5.638657 GCTGACATAAACAAATGGCATCAAA 59.361 36.000 0.00 0.00 43.87 2.69
1651 1838 9.777297 ATGGCCGCAAATTAAATTAGATAAATT 57.223 25.926 0.00 0.00 39.56 1.82
1657 1844 8.637986 AGATAAATGGCCGCAAATTAAATTAGA 58.362 29.630 0.00 0.00 0.00 2.10
1658 1845 8.816640 AGATAAATGGCCGCAAATTAAATTAG 57.183 30.769 0.00 0.00 0.00 1.73
1659 1846 9.685828 GTAGATAAATGGCCGCAAATTAAATTA 57.314 29.630 0.00 0.00 0.00 1.40
1672 1860 6.699575 AACAATCACAGTAGATAAATGGCC 57.300 37.500 0.00 0.00 0.00 5.36
1810 2075 6.848451 TCACCAACTTCAGTTTTACTCAAAC 58.152 36.000 0.00 0.00 44.73 2.93
1876 2149 3.815401 GCCATATGGATGACAAGTACACC 59.185 47.826 26.47 0.00 37.39 4.16
1922 2196 2.300152 TGTGACTTTCTGAGCACTAGGG 59.700 50.000 0.00 0.00 35.09 3.53
1923 2197 3.667497 TGTGACTTTCTGAGCACTAGG 57.333 47.619 0.00 0.00 35.09 3.02
1983 2257 2.215196 TGCGAAAACCGAAAAGTAGCT 58.785 42.857 0.00 0.00 41.76 3.32
1993 2267 4.347813 TCTTCTTCTTTTTGCGAAAACCG 58.652 39.130 7.81 0.20 42.21 4.44
1995 2269 8.782533 TTATCTCTTCTTCTTTTTGCGAAAAC 57.217 30.769 7.81 0.00 31.72 2.43
1996 2270 9.965824 ATTTATCTCTTCTTCTTTTTGCGAAAA 57.034 25.926 11.37 11.37 33.86 2.29
1997 2271 9.965824 AATTTATCTCTTCTTCTTTTTGCGAAA 57.034 25.926 0.00 0.00 0.00 3.46
2008 2282 6.145371 CGCTGCCTCTAATTTATCTCTTCTTC 59.855 42.308 0.00 0.00 0.00 2.87
2046 2323 5.906113 TCTAGCTTGTTCCTTGACTCTAG 57.094 43.478 0.00 0.00 0.00 2.43
2084 2365 1.028905 TAGCAGCAACGGCAAACTTT 58.971 45.000 0.00 0.00 44.61 2.66
2085 2366 1.247567 ATAGCAGCAACGGCAAACTT 58.752 45.000 0.00 0.00 44.61 2.66
2086 2367 1.068333 CAATAGCAGCAACGGCAAACT 60.068 47.619 0.00 0.00 44.61 2.66
2087 2368 1.068610 TCAATAGCAGCAACGGCAAAC 60.069 47.619 0.00 0.00 44.61 2.93
2088 2369 1.199789 CTCAATAGCAGCAACGGCAAA 59.800 47.619 0.00 0.00 44.61 3.68
2089 2370 0.804364 CTCAATAGCAGCAACGGCAA 59.196 50.000 0.00 0.00 44.61 4.52
2090 2371 0.321564 ACTCAATAGCAGCAACGGCA 60.322 50.000 0.00 0.00 44.61 5.69
2091 2372 0.804989 AACTCAATAGCAGCAACGGC 59.195 50.000 0.00 0.00 41.61 5.68
2092 2373 2.609459 CCTAACTCAATAGCAGCAACGG 59.391 50.000 0.00 0.00 0.00 4.44
2093 2374 2.609459 CCCTAACTCAATAGCAGCAACG 59.391 50.000 0.00 0.00 0.00 4.10
2094 2375 2.945668 CCCCTAACTCAATAGCAGCAAC 59.054 50.000 0.00 0.00 0.00 4.17
2095 2376 2.576191 ACCCCTAACTCAATAGCAGCAA 59.424 45.455 0.00 0.00 0.00 3.91
2096 2377 2.092968 CACCCCTAACTCAATAGCAGCA 60.093 50.000 0.00 0.00 0.00 4.41
2097 2378 2.565841 CACCCCTAACTCAATAGCAGC 58.434 52.381 0.00 0.00 0.00 5.25
2098 2379 2.092968 TGCACCCCTAACTCAATAGCAG 60.093 50.000 0.00 0.00 0.00 4.24
2099 2380 1.912731 TGCACCCCTAACTCAATAGCA 59.087 47.619 0.00 0.00 0.00 3.49
2100 2381 2.710096 TGCACCCCTAACTCAATAGC 57.290 50.000 0.00 0.00 0.00 2.97
2101 2382 3.545703 CCTTGCACCCCTAACTCAATAG 58.454 50.000 0.00 0.00 0.00 1.73
2102 2383 2.356741 GCCTTGCACCCCTAACTCAATA 60.357 50.000 0.00 0.00 0.00 1.90
2103 2384 1.616994 GCCTTGCACCCCTAACTCAAT 60.617 52.381 0.00 0.00 0.00 2.57
2104 2385 0.251165 GCCTTGCACCCCTAACTCAA 60.251 55.000 0.00 0.00 0.00 3.02
2105 2386 1.378762 GCCTTGCACCCCTAACTCA 59.621 57.895 0.00 0.00 0.00 3.41
2106 2387 1.745489 CGCCTTGCACCCCTAACTC 60.745 63.158 0.00 0.00 0.00 3.01
2107 2388 2.351276 CGCCTTGCACCCCTAACT 59.649 61.111 0.00 0.00 0.00 2.24
2108 2389 2.750237 CCGCCTTGCACCCCTAAC 60.750 66.667 0.00 0.00 0.00 2.34
2109 2390 4.733542 GCCGCCTTGCACCCCTAA 62.734 66.667 0.00 0.00 0.00 2.69
2130 2411 2.622903 TAGGAAGCGTGCCGGATTCG 62.623 60.000 5.05 7.38 33.27 3.34
2131 2412 0.249911 ATAGGAAGCGTGCCGGATTC 60.250 55.000 5.05 0.02 0.00 2.52
2132 2413 0.180406 AATAGGAAGCGTGCCGGATT 59.820 50.000 5.05 0.00 0.00 3.01
2133 2414 0.249911 GAATAGGAAGCGTGCCGGAT 60.250 55.000 5.05 0.00 0.00 4.18
2134 2415 1.143183 GAATAGGAAGCGTGCCGGA 59.857 57.895 5.05 0.00 0.00 5.14
2135 2416 0.742990 TTGAATAGGAAGCGTGCCGG 60.743 55.000 0.00 0.00 0.00 6.13
2136 2417 1.062587 CTTTGAATAGGAAGCGTGCCG 59.937 52.381 0.00 0.00 0.00 5.69
2137 2418 1.202188 GCTTTGAATAGGAAGCGTGCC 60.202 52.381 0.00 0.00 38.89 5.01
2138 2419 2.179949 GCTTTGAATAGGAAGCGTGC 57.820 50.000 0.00 0.00 38.89 5.34
2181 2462 9.263538 AGTACAAATTGATGTGACGTAGTTTAA 57.736 29.630 0.00 0.00 36.13 1.52
2182 2463 8.821147 AGTACAAATTGATGTGACGTAGTTTA 57.179 30.769 0.00 0.00 36.13 2.01
2183 2464 7.724305 AGTACAAATTGATGTGACGTAGTTT 57.276 32.000 0.00 0.00 36.13 2.66
2184 2465 7.063074 GCTAGTACAAATTGATGTGACGTAGTT 59.937 37.037 0.00 0.00 36.13 2.24
2185 2466 6.530534 GCTAGTACAAATTGATGTGACGTAGT 59.469 38.462 0.00 0.00 38.01 2.73
2186 2467 6.752351 AGCTAGTACAAATTGATGTGACGTAG 59.248 38.462 0.00 0.00 34.75 3.51
2187 2468 6.530181 CAGCTAGTACAAATTGATGTGACGTA 59.470 38.462 0.00 0.00 34.75 3.57
2188 2469 5.348724 CAGCTAGTACAAATTGATGTGACGT 59.651 40.000 0.00 0.00 34.75 4.34
2189 2470 5.348724 ACAGCTAGTACAAATTGATGTGACG 59.651 40.000 0.00 0.00 34.75 4.35
2190 2471 6.147821 ACACAGCTAGTACAAATTGATGTGAC 59.852 38.462 20.10 0.56 38.99 3.67
2191 2472 6.147656 CACACAGCTAGTACAAATTGATGTGA 59.852 38.462 20.10 0.00 38.99 3.58
2192 2473 6.309436 CACACAGCTAGTACAAATTGATGTG 58.691 40.000 15.11 15.11 40.90 3.21
2193 2474 5.106555 GCACACAGCTAGTACAAATTGATGT 60.107 40.000 0.00 0.00 41.15 3.06
2194 2475 5.327091 GCACACAGCTAGTACAAATTGATG 58.673 41.667 0.00 0.00 41.15 3.07
2195 2476 5.551760 GCACACAGCTAGTACAAATTGAT 57.448 39.130 0.00 0.00 41.15 2.57
2209 2490 2.046507 AGCCAGCTAGCACACAGC 60.047 61.111 18.83 11.55 46.19 4.40
2210 2491 0.604780 AACAGCCAGCTAGCACACAG 60.605 55.000 18.83 6.23 34.23 3.66
2211 2492 0.179020 AAACAGCCAGCTAGCACACA 60.179 50.000 18.83 0.00 34.23 3.72
2212 2493 0.954452 AAAACAGCCAGCTAGCACAC 59.046 50.000 18.83 5.07 34.23 3.82
2213 2494 0.953727 CAAAACAGCCAGCTAGCACA 59.046 50.000 18.83 0.00 34.23 4.57
2214 2495 0.387750 GCAAAACAGCCAGCTAGCAC 60.388 55.000 18.83 5.87 34.23 4.40
2215 2496 1.855213 CGCAAAACAGCCAGCTAGCA 61.855 55.000 18.83 0.00 34.23 3.49
2216 2497 1.154150 CGCAAAACAGCCAGCTAGC 60.154 57.895 6.62 6.62 0.00 3.42
2217 2498 1.503542 CCGCAAAACAGCCAGCTAG 59.496 57.895 0.00 0.00 0.00 3.42
2218 2499 1.971167 CCCGCAAAACAGCCAGCTA 60.971 57.895 0.00 0.00 0.00 3.32
2219 2500 3.297620 CCCGCAAAACAGCCAGCT 61.298 61.111 0.00 0.00 0.00 4.24
2220 2501 2.158561 AATCCCGCAAAACAGCCAGC 62.159 55.000 0.00 0.00 0.00 4.85
2221 2502 0.318120 AAATCCCGCAAAACAGCCAG 59.682 50.000 0.00 0.00 0.00 4.85
2222 2503 0.755686 AAAATCCCGCAAAACAGCCA 59.244 45.000 0.00 0.00 0.00 4.75
2223 2504 1.147473 CAAAATCCCGCAAAACAGCC 58.853 50.000 0.00 0.00 0.00 4.85
2224 2505 0.512518 GCAAAATCCCGCAAAACAGC 59.487 50.000 0.00 0.00 0.00 4.40
2225 2506 0.783579 CGCAAAATCCCGCAAAACAG 59.216 50.000 0.00 0.00 0.00 3.16
2226 2507 0.598680 CCGCAAAATCCCGCAAAACA 60.599 50.000 0.00 0.00 0.00 2.83
2227 2508 0.319125 TCCGCAAAATCCCGCAAAAC 60.319 50.000 0.00 0.00 0.00 2.43
2228 2509 0.038709 CTCCGCAAAATCCCGCAAAA 60.039 50.000 0.00 0.00 0.00 2.44
2229 2510 1.583986 CTCCGCAAAATCCCGCAAA 59.416 52.632 0.00 0.00 0.00 3.68
2230 2511 2.988688 GCTCCGCAAAATCCCGCAA 61.989 57.895 0.00 0.00 0.00 4.85
2231 2512 3.439540 GCTCCGCAAAATCCCGCA 61.440 61.111 0.00 0.00 0.00 5.69
2232 2513 4.536687 CGCTCCGCAAAATCCCGC 62.537 66.667 0.00 0.00 0.00 6.13
2248 2529 2.363711 TATAGGCTTGCAGGACGGCG 62.364 60.000 4.80 4.80 36.28 6.46
2249 2530 0.035458 ATATAGGCTTGCAGGACGGC 59.965 55.000 0.00 0.00 0.00 5.68
2250 2531 2.146342 CAATATAGGCTTGCAGGACGG 58.854 52.381 0.00 0.00 0.00 4.79
2251 2532 3.062763 CTCAATATAGGCTTGCAGGACG 58.937 50.000 0.00 0.00 0.00 4.79
2252 2533 4.078639 ACTCAATATAGGCTTGCAGGAC 57.921 45.455 0.00 0.00 0.00 3.85
2253 2534 6.043127 TCAATACTCAATATAGGCTTGCAGGA 59.957 38.462 0.00 0.00 0.00 3.86
2254 2535 6.233434 TCAATACTCAATATAGGCTTGCAGG 58.767 40.000 0.00 0.00 0.00 4.85
2255 2536 7.117523 GTCTCAATACTCAATATAGGCTTGCAG 59.882 40.741 0.00 0.00 0.00 4.41
2256 2537 6.931281 GTCTCAATACTCAATATAGGCTTGCA 59.069 38.462 0.00 0.00 0.00 4.08
2257 2538 6.931281 TGTCTCAATACTCAATATAGGCTTGC 59.069 38.462 0.00 0.00 0.00 4.01
2258 2539 7.386299 GGTGTCTCAATACTCAATATAGGCTTG 59.614 40.741 0.00 0.00 0.00 4.01
2259 2540 7.291182 AGGTGTCTCAATACTCAATATAGGCTT 59.709 37.037 0.00 0.00 0.00 4.35
2260 2541 6.784969 AGGTGTCTCAATACTCAATATAGGCT 59.215 38.462 0.00 0.00 0.00 4.58
2261 2542 6.870965 CAGGTGTCTCAATACTCAATATAGGC 59.129 42.308 0.00 0.00 0.00 3.93
2262 2543 8.183104 TCAGGTGTCTCAATACTCAATATAGG 57.817 38.462 0.00 0.00 0.00 2.57
2263 2544 8.855110 ACTCAGGTGTCTCAATACTCAATATAG 58.145 37.037 0.00 0.00 0.00 1.31
2264 2545 8.768501 ACTCAGGTGTCTCAATACTCAATATA 57.231 34.615 0.00 0.00 0.00 0.86
2265 2546 7.667575 ACTCAGGTGTCTCAATACTCAATAT 57.332 36.000 0.00 0.00 0.00 1.28
2266 2547 7.482169 AACTCAGGTGTCTCAATACTCAATA 57.518 36.000 0.00 0.00 0.00 1.90
2267 2548 6.365970 AACTCAGGTGTCTCAATACTCAAT 57.634 37.500 0.00 0.00 0.00 2.57
2268 2549 5.808366 AACTCAGGTGTCTCAATACTCAA 57.192 39.130 0.00 0.00 0.00 3.02
2269 2550 5.808366 AAACTCAGGTGTCTCAATACTCA 57.192 39.130 0.00 0.00 0.00 3.41
2327 2608 9.895138 ACCAAGTTAGTAGTAGAACAAAGAAAA 57.105 29.630 0.00 0.00 0.00 2.29
2339 2620 9.715121 CCTTCACAAATTACCAAGTTAGTAGTA 57.285 33.333 0.00 0.00 0.00 1.82
2340 2621 8.215736 ACCTTCACAAATTACCAAGTTAGTAGT 58.784 33.333 0.00 0.00 0.00 2.73
2341 2622 8.504005 CACCTTCACAAATTACCAAGTTAGTAG 58.496 37.037 0.00 0.00 0.00 2.57
2342 2623 7.040961 GCACCTTCACAAATTACCAAGTTAGTA 60.041 37.037 0.00 0.00 0.00 1.82
2343 2624 6.238925 GCACCTTCACAAATTACCAAGTTAGT 60.239 38.462 0.00 0.00 0.00 2.24
2344 2625 6.149633 GCACCTTCACAAATTACCAAGTTAG 58.850 40.000 0.00 0.00 0.00 2.34
2345 2626 5.594725 TGCACCTTCACAAATTACCAAGTTA 59.405 36.000 0.00 0.00 0.00 2.24
2346 2627 4.404073 TGCACCTTCACAAATTACCAAGTT 59.596 37.500 0.00 0.00 0.00 2.66
2347 2628 3.957497 TGCACCTTCACAAATTACCAAGT 59.043 39.130 0.00 0.00 0.00 3.16
2348 2629 4.582701 TGCACCTTCACAAATTACCAAG 57.417 40.909 0.00 0.00 0.00 3.61
2349 2630 5.105146 ACTTTGCACCTTCACAAATTACCAA 60.105 36.000 0.00 0.00 35.38 3.67
2350 2631 4.404073 ACTTTGCACCTTCACAAATTACCA 59.596 37.500 0.00 0.00 35.38 3.25
2351 2632 4.944048 ACTTTGCACCTTCACAAATTACC 58.056 39.130 0.00 0.00 35.38 2.85
2352 2633 6.902224 AAACTTTGCACCTTCACAAATTAC 57.098 33.333 0.00 0.00 35.38 1.89
2353 2634 7.821846 AGAAAAACTTTGCACCTTCACAAATTA 59.178 29.630 0.00 0.00 35.38 1.40
2354 2635 6.654582 AGAAAAACTTTGCACCTTCACAAATT 59.345 30.769 0.00 0.00 35.38 1.82
2355 2636 6.172630 AGAAAAACTTTGCACCTTCACAAAT 58.827 32.000 0.00 0.00 35.38 2.32
2356 2637 5.546526 AGAAAAACTTTGCACCTTCACAAA 58.453 33.333 0.00 0.00 34.73 2.83
2357 2638 5.146010 AGAAAAACTTTGCACCTTCACAA 57.854 34.783 0.00 0.00 0.00 3.33
2358 2639 4.799564 AGAAAAACTTTGCACCTTCACA 57.200 36.364 0.00 0.00 0.00 3.58
2359 2640 5.743872 CAGTAGAAAAACTTTGCACCTTCAC 59.256 40.000 0.00 0.00 0.00 3.18
2360 2641 5.650266 TCAGTAGAAAAACTTTGCACCTTCA 59.350 36.000 0.00 0.00 0.00 3.02
2361 2642 6.131544 TCAGTAGAAAAACTTTGCACCTTC 57.868 37.500 0.00 0.00 0.00 3.46
2362 2643 6.715347 ATCAGTAGAAAAACTTTGCACCTT 57.285 33.333 0.00 0.00 0.00 3.50
2363 2644 6.321181 TGAATCAGTAGAAAAACTTTGCACCT 59.679 34.615 0.00 0.00 0.00 4.00
2364 2645 6.503524 TGAATCAGTAGAAAAACTTTGCACC 58.496 36.000 0.00 0.00 0.00 5.01
2365 2646 8.579682 AATGAATCAGTAGAAAAACTTTGCAC 57.420 30.769 0.00 0.00 0.00 4.57
2366 2647 9.248291 GAAATGAATCAGTAGAAAAACTTTGCA 57.752 29.630 0.00 0.00 0.00 4.08
2367 2648 9.468532 AGAAATGAATCAGTAGAAAAACTTTGC 57.531 29.630 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.