Multiple sequence alignment - TraesCS1B01G357400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G357400 chr1B 100.000 2867 0 0 1 2867 587471843 587474709 0.000000e+00 5295.0
1 TraesCS1B01G357400 chr6D 85.604 2341 171 76 593 2867 16523632 16521392 0.000000e+00 2303.0
2 TraesCS1B01G357400 chr6D 84.780 979 88 39 781 1730 16529767 16528821 0.000000e+00 926.0
3 TraesCS1B01G357400 chr6D 87.193 773 62 22 853 1608 16307431 16306679 0.000000e+00 845.0
4 TraesCS1B01G357400 chr6D 86.483 725 67 23 890 1593 24001412 24002126 0.000000e+00 767.0
5 TraesCS1B01G357400 chr6B 87.132 1391 115 37 587 1931 28980695 28979323 0.000000e+00 1519.0
6 TraesCS1B01G357400 chr6B 87.510 1257 79 38 593 1801 29061049 29059823 0.000000e+00 1380.0
7 TraesCS1B01G357400 chr6B 86.579 991 84 36 853 1832 28256813 28255861 0.000000e+00 1048.0
8 TraesCS1B01G357400 chr6B 89.857 769 47 18 853 1607 28925846 28926597 0.000000e+00 959.0
9 TraesCS1B01G357400 chr6B 90.976 410 21 6 2277 2672 28978591 28978184 3.250000e-149 538.0
10 TraesCS1B01G357400 chr6B 92.727 220 7 1 2648 2867 29059140 29058930 2.770000e-80 309.0
11 TraesCS1B01G357400 chr6B 92.271 207 12 3 2261 2466 29059375 29059172 1.000000e-74 291.0
12 TraesCS1B01G357400 chr6B 86.282 277 10 6 1978 2234 29059710 29059442 2.810000e-70 276.0
13 TraesCS1B01G357400 chr6B 91.525 59 5 0 2686 2744 28977994 28977936 6.580000e-12 82.4
14 TraesCS1B01G357400 chr6B 79.464 112 10 5 1953 2051 28979328 28979217 1.840000e-07 67.6
15 TraesCS1B01G357400 chr6A 87.355 1289 111 31 587 1838 16720651 16719378 0.000000e+00 1430.0
16 TraesCS1B01G357400 chr6A 86.538 780 63 26 846 1607 16593984 16593229 0.000000e+00 821.0
17 TraesCS1B01G357400 chr6A 84.370 627 54 20 2262 2866 16716651 16716047 2.480000e-160 575.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G357400 chr1B 587471843 587474709 2866 False 5295.00 5295 100.00000 1 2867 1 chr1B.!!$F1 2866
1 TraesCS1B01G357400 chr6D 16521392 16523632 2240 True 2303.00 2303 85.60400 593 2867 1 chr6D.!!$R2 2274
2 TraesCS1B01G357400 chr6D 16528821 16529767 946 True 926.00 926 84.78000 781 1730 1 chr6D.!!$R3 949
3 TraesCS1B01G357400 chr6D 16306679 16307431 752 True 845.00 845 87.19300 853 1608 1 chr6D.!!$R1 755
4 TraesCS1B01G357400 chr6D 24001412 24002126 714 False 767.00 767 86.48300 890 1593 1 chr6D.!!$F1 703
5 TraesCS1B01G357400 chr6B 28255861 28256813 952 True 1048.00 1048 86.57900 853 1832 1 chr6B.!!$R1 979
6 TraesCS1B01G357400 chr6B 28925846 28926597 751 False 959.00 959 89.85700 853 1607 1 chr6B.!!$F1 754
7 TraesCS1B01G357400 chr6B 29058930 29061049 2119 True 564.00 1380 89.69750 593 2867 4 chr6B.!!$R3 2274
8 TraesCS1B01G357400 chr6B 28977936 28980695 2759 True 551.75 1519 87.27425 587 2744 4 chr6B.!!$R2 2157
9 TraesCS1B01G357400 chr6A 16716047 16720651 4604 True 1002.50 1430 85.86250 587 2866 2 chr6A.!!$R2 2279
10 TraesCS1B01G357400 chr6A 16593229 16593984 755 True 821.00 821 86.53800 846 1607 1 chr6A.!!$R1 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.110486 AAGCGGAAGGCCAAAGAGAA 59.890 50.0 5.01 0.0 45.17 2.87 F
842 857 0.251608 CCACCCCCGAAACAAATCCT 60.252 55.0 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1634 1726 0.762418 TACACACAGGACCCAACCAG 59.238 55.0 0.0 0.0 0.0 4.0 R
2698 5796 0.398098 GACGATGGGGGTAAGAGGGA 60.398 60.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.299993 TTGCAAAATTCGGCACAACA 57.700 40.000 0.00 0.00 40.23 3.33
20 21 1.565305 TGCAAAATTCGGCACAACAC 58.435 45.000 0.25 0.00 34.58 3.32
21 22 0.858583 GCAAAATTCGGCACAACACC 59.141 50.000 0.00 0.00 0.00 4.16
28 29 3.952811 GGCACAACACCGAGAGTC 58.047 61.111 0.00 0.00 0.00 3.36
29 30 2.022129 GGCACAACACCGAGAGTCG 61.022 63.158 0.00 0.00 40.07 4.18
41 42 3.605743 CGAGAGTCGGTACCTATGTTC 57.394 52.381 10.90 1.69 36.00 3.18
42 43 2.941064 CGAGAGTCGGTACCTATGTTCA 59.059 50.000 10.90 0.00 36.00 3.18
43 44 3.376234 CGAGAGTCGGTACCTATGTTCAA 59.624 47.826 10.90 0.00 36.00 2.69
44 45 4.142534 CGAGAGTCGGTACCTATGTTCAAA 60.143 45.833 10.90 0.00 36.00 2.69
45 46 5.620654 CGAGAGTCGGTACCTATGTTCAAAA 60.621 44.000 10.90 0.00 36.00 2.44
46 47 5.721232 AGAGTCGGTACCTATGTTCAAAAG 58.279 41.667 10.90 0.00 0.00 2.27
47 48 5.479375 AGAGTCGGTACCTATGTTCAAAAGA 59.521 40.000 10.90 0.00 0.00 2.52
48 49 5.721232 AGTCGGTACCTATGTTCAAAAGAG 58.279 41.667 10.90 0.00 0.00 2.85
49 50 5.479375 AGTCGGTACCTATGTTCAAAAGAGA 59.521 40.000 10.90 0.00 0.00 3.10
50 51 6.014840 AGTCGGTACCTATGTTCAAAAGAGAA 60.015 38.462 10.90 0.00 0.00 2.87
51 52 6.310711 GTCGGTACCTATGTTCAAAAGAGAAG 59.689 42.308 10.90 0.00 0.00 2.85
52 53 6.209986 TCGGTACCTATGTTCAAAAGAGAAGA 59.790 38.462 10.90 0.00 0.00 2.87
53 54 6.310711 CGGTACCTATGTTCAAAAGAGAAGAC 59.689 42.308 10.90 0.00 0.00 3.01
54 55 7.159372 GGTACCTATGTTCAAAAGAGAAGACA 58.841 38.462 4.06 0.00 0.00 3.41
55 56 7.660208 GGTACCTATGTTCAAAAGAGAAGACAA 59.340 37.037 4.06 0.00 0.00 3.18
56 57 9.052759 GTACCTATGTTCAAAAGAGAAGACAAA 57.947 33.333 0.00 0.00 0.00 2.83
57 58 8.159344 ACCTATGTTCAAAAGAGAAGACAAAG 57.841 34.615 0.00 0.00 0.00 2.77
58 59 7.993183 ACCTATGTTCAAAAGAGAAGACAAAGA 59.007 33.333 0.00 0.00 0.00 2.52
59 60 9.007901 CCTATGTTCAAAAGAGAAGACAAAGAT 57.992 33.333 0.00 0.00 0.00 2.40
66 67 9.799106 TCAAAAGAGAAGACAAAGATTTATCCT 57.201 29.630 0.00 0.00 0.00 3.24
122 123 6.902341 CGAAGGAGATGAAAAATCTTTGTCA 58.098 36.000 0.00 0.00 38.66 3.58
123 124 7.533426 CGAAGGAGATGAAAAATCTTTGTCAT 58.467 34.615 7.84 7.84 45.38 3.06
124 125 7.484007 CGAAGGAGATGAAAAATCTTTGTCATG 59.516 37.037 12.04 0.00 43.36 3.07
125 126 8.413309 AAGGAGATGAAAAATCTTTGTCATGA 57.587 30.769 12.04 0.00 43.36 3.07
126 127 8.053026 AGGAGATGAAAAATCTTTGTCATGAG 57.947 34.615 12.04 0.00 43.36 2.90
127 128 7.668886 AGGAGATGAAAAATCTTTGTCATGAGT 59.331 33.333 12.04 0.00 43.36 3.41
128 129 8.302438 GGAGATGAAAAATCTTTGTCATGAGTT 58.698 33.333 12.04 0.00 43.36 3.01
129 130 9.688592 GAGATGAAAAATCTTTGTCATGAGTTT 57.311 29.630 12.04 0.00 43.36 2.66
145 146 9.736023 GTCATGAGTTTAATATTGGAAATGACC 57.264 33.333 0.00 0.00 0.00 4.02
146 147 8.912988 TCATGAGTTTAATATTGGAAATGACCC 58.087 33.333 0.00 0.00 0.00 4.46
147 148 7.654022 TGAGTTTAATATTGGAAATGACCCC 57.346 36.000 0.00 0.00 0.00 4.95
148 149 7.418378 TGAGTTTAATATTGGAAATGACCCCT 58.582 34.615 0.00 0.00 0.00 4.79
149 150 7.559897 TGAGTTTAATATTGGAAATGACCCCTC 59.440 37.037 0.00 0.00 0.00 4.30
150 151 7.652554 AGTTTAATATTGGAAATGACCCCTCT 58.347 34.615 0.00 0.00 0.00 3.69
151 152 8.122481 AGTTTAATATTGGAAATGACCCCTCTT 58.878 33.333 0.00 0.00 0.00 2.85
152 153 8.758829 GTTTAATATTGGAAATGACCCCTCTTT 58.241 33.333 0.00 0.00 0.00 2.52
153 154 8.533569 TTAATATTGGAAATGACCCCTCTTTC 57.466 34.615 0.00 0.00 0.00 2.62
154 155 2.899303 TGGAAATGACCCCTCTTTCC 57.101 50.000 6.38 6.38 45.30 3.13
155 156 2.899303 GGAAATGACCCCTCTTTCCA 57.101 50.000 8.10 0.00 44.73 3.53
156 157 2.447443 GGAAATGACCCCTCTTTCCAC 58.553 52.381 8.10 0.00 44.73 4.02
157 158 2.225017 GGAAATGACCCCTCTTTCCACA 60.225 50.000 8.10 0.00 44.73 4.17
158 159 3.564352 GGAAATGACCCCTCTTTCCACAT 60.564 47.826 8.10 0.00 44.73 3.21
159 160 3.372440 AATGACCCCTCTTTCCACATC 57.628 47.619 0.00 0.00 0.00 3.06
160 161 2.044793 TGACCCCTCTTTCCACATCT 57.955 50.000 0.00 0.00 0.00 2.90
161 162 2.348472 TGACCCCTCTTTCCACATCTT 58.652 47.619 0.00 0.00 0.00 2.40
162 163 3.526899 TGACCCCTCTTTCCACATCTTA 58.473 45.455 0.00 0.00 0.00 2.10
163 164 3.913799 TGACCCCTCTTTCCACATCTTAA 59.086 43.478 0.00 0.00 0.00 1.85
164 165 4.352595 TGACCCCTCTTTCCACATCTTAAA 59.647 41.667 0.00 0.00 0.00 1.52
165 166 5.163034 TGACCCCTCTTTCCACATCTTAAAA 60.163 40.000 0.00 0.00 0.00 1.52
166 167 5.325239 ACCCCTCTTTCCACATCTTAAAAG 58.675 41.667 0.00 0.00 0.00 2.27
167 168 5.074515 ACCCCTCTTTCCACATCTTAAAAGA 59.925 40.000 0.00 0.00 39.78 2.52
168 169 6.190587 CCCCTCTTTCCACATCTTAAAAGAT 58.809 40.000 0.00 0.00 46.30 2.40
169 170 6.665248 CCCCTCTTTCCACATCTTAAAAGATT 59.335 38.462 2.41 0.00 42.96 2.40
170 171 7.834181 CCCCTCTTTCCACATCTTAAAAGATTA 59.166 37.037 2.41 0.00 42.96 1.75
171 172 9.413734 CCCTCTTTCCACATCTTAAAAGATTAT 57.586 33.333 2.41 0.00 42.96 1.28
191 192 9.435688 AGATTATTTCAAGTTTTTGGCATTACC 57.564 29.630 0.00 0.00 34.97 2.85
201 202 2.734755 TGGCATTACCAGATGAAGGG 57.265 50.000 0.00 0.00 46.36 3.95
202 203 1.922447 TGGCATTACCAGATGAAGGGT 59.078 47.619 0.00 0.00 46.36 4.34
203 204 2.311542 TGGCATTACCAGATGAAGGGTT 59.688 45.455 0.00 0.00 46.36 4.11
204 205 3.245586 TGGCATTACCAGATGAAGGGTTT 60.246 43.478 0.00 0.00 46.36 3.27
205 206 3.131046 GGCATTACCAGATGAAGGGTTTG 59.869 47.826 0.00 0.00 38.60 2.93
206 207 3.763897 GCATTACCAGATGAAGGGTTTGT 59.236 43.478 0.00 0.00 38.60 2.83
207 208 4.947388 GCATTACCAGATGAAGGGTTTGTA 59.053 41.667 0.00 0.00 38.60 2.41
208 209 5.417580 GCATTACCAGATGAAGGGTTTGTAA 59.582 40.000 0.00 0.00 38.60 2.41
209 210 6.071616 GCATTACCAGATGAAGGGTTTGTAAA 60.072 38.462 0.00 0.00 38.60 2.01
210 211 7.538575 CATTACCAGATGAAGGGTTTGTAAAG 58.461 38.462 0.00 0.00 38.60 1.85
211 212 3.826729 ACCAGATGAAGGGTTTGTAAAGC 59.173 43.478 0.00 0.00 32.12 3.51
212 213 3.826157 CCAGATGAAGGGTTTGTAAAGCA 59.174 43.478 8.57 0.00 38.11 3.91
213 214 4.463891 CCAGATGAAGGGTTTGTAAAGCAT 59.536 41.667 8.57 0.00 38.11 3.79
214 215 5.652014 CCAGATGAAGGGTTTGTAAAGCATA 59.348 40.000 8.57 0.00 38.11 3.14
215 216 6.404734 CCAGATGAAGGGTTTGTAAAGCATAC 60.405 42.308 8.57 0.00 38.11 2.39
216 217 6.375455 CAGATGAAGGGTTTGTAAAGCATACT 59.625 38.462 8.57 0.00 38.11 2.12
217 218 7.552687 CAGATGAAGGGTTTGTAAAGCATACTA 59.447 37.037 8.57 0.00 38.11 1.82
218 219 7.770897 AGATGAAGGGTTTGTAAAGCATACTAG 59.229 37.037 8.57 0.00 38.11 2.57
219 220 6.177610 TGAAGGGTTTGTAAAGCATACTAGG 58.822 40.000 8.57 0.00 38.11 3.02
220 221 5.112129 AGGGTTTGTAAAGCATACTAGGG 57.888 43.478 8.57 0.00 38.11 3.53
221 222 4.786454 AGGGTTTGTAAAGCATACTAGGGA 59.214 41.667 8.57 0.00 38.11 4.20
222 223 5.252164 AGGGTTTGTAAAGCATACTAGGGAA 59.748 40.000 8.57 0.00 38.11 3.97
223 224 6.069029 AGGGTTTGTAAAGCATACTAGGGAAT 60.069 38.462 8.57 0.00 38.11 3.01
224 225 7.128263 AGGGTTTGTAAAGCATACTAGGGAATA 59.872 37.037 8.57 0.00 38.11 1.75
225 226 7.942894 GGGTTTGTAAAGCATACTAGGGAATAT 59.057 37.037 8.57 0.00 38.11 1.28
230 231 9.720769 TGTAAAGCATACTAGGGAATATAAAGC 57.279 33.333 0.00 0.00 0.00 3.51
231 232 9.720769 GTAAAGCATACTAGGGAATATAAAGCA 57.279 33.333 0.00 0.00 0.00 3.91
233 234 9.813826 AAAGCATACTAGGGAATATAAAGCAAT 57.186 29.630 0.00 0.00 0.00 3.56
234 235 9.813826 AAGCATACTAGGGAATATAAAGCAATT 57.186 29.630 0.00 0.00 0.00 2.32
235 236 9.454859 AGCATACTAGGGAATATAAAGCAATTC 57.545 33.333 0.00 0.00 0.00 2.17
236 237 9.231297 GCATACTAGGGAATATAAAGCAATTCA 57.769 33.333 0.00 0.00 34.44 2.57
240 241 9.071276 ACTAGGGAATATAAAGCAATTCACATG 57.929 33.333 0.00 0.00 37.87 3.21
241 242 7.294017 AGGGAATATAAAGCAATTCACATGG 57.706 36.000 0.00 0.00 37.87 3.66
242 243 6.840705 AGGGAATATAAAGCAATTCACATGGT 59.159 34.615 0.00 0.00 37.87 3.55
243 244 8.004215 AGGGAATATAAAGCAATTCACATGGTA 58.996 33.333 0.00 0.00 37.87 3.25
244 245 8.299570 GGGAATATAAAGCAATTCACATGGTAG 58.700 37.037 0.00 0.00 35.89 3.18
245 246 9.066892 GGAATATAAAGCAATTCACATGGTAGA 57.933 33.333 0.00 0.00 34.44 2.59
247 248 6.949352 ATAAAGCAATTCACATGGTAGAGG 57.051 37.500 0.00 0.00 0.00 3.69
248 249 2.648059 AGCAATTCACATGGTAGAGGC 58.352 47.619 0.00 0.00 0.00 4.70
249 250 2.025981 AGCAATTCACATGGTAGAGGCA 60.026 45.455 0.00 0.00 0.00 4.75
250 251 2.754552 GCAATTCACATGGTAGAGGCAA 59.245 45.455 0.00 0.00 0.00 4.52
251 252 3.382546 GCAATTCACATGGTAGAGGCAAT 59.617 43.478 0.00 0.00 0.00 3.56
252 253 4.142093 GCAATTCACATGGTAGAGGCAATT 60.142 41.667 0.00 0.00 0.00 2.32
253 254 5.067674 GCAATTCACATGGTAGAGGCAATTA 59.932 40.000 0.00 0.00 0.00 1.40
254 255 6.239120 GCAATTCACATGGTAGAGGCAATTAT 60.239 38.462 0.00 0.00 0.00 1.28
255 256 6.889301 ATTCACATGGTAGAGGCAATTATG 57.111 37.500 0.00 0.00 0.00 1.90
256 257 5.628797 TCACATGGTAGAGGCAATTATGA 57.371 39.130 0.00 0.00 0.00 2.15
257 258 6.000246 TCACATGGTAGAGGCAATTATGAA 58.000 37.500 0.00 0.00 0.00 2.57
258 259 6.057533 TCACATGGTAGAGGCAATTATGAAG 58.942 40.000 0.00 0.00 0.00 3.02
259 260 6.057533 CACATGGTAGAGGCAATTATGAAGA 58.942 40.000 0.00 0.00 0.00 2.87
260 261 6.543465 CACATGGTAGAGGCAATTATGAAGAA 59.457 38.462 0.00 0.00 0.00 2.52
261 262 7.067372 CACATGGTAGAGGCAATTATGAAGAAA 59.933 37.037 0.00 0.00 0.00 2.52
262 263 7.615365 ACATGGTAGAGGCAATTATGAAGAAAA 59.385 33.333 0.00 0.00 0.00 2.29
263 264 7.391148 TGGTAGAGGCAATTATGAAGAAAAC 57.609 36.000 0.00 0.00 0.00 2.43
264 265 6.377146 TGGTAGAGGCAATTATGAAGAAAACC 59.623 38.462 0.00 0.00 0.00 3.27
265 266 6.377146 GGTAGAGGCAATTATGAAGAAAACCA 59.623 38.462 0.00 0.00 0.00 3.67
266 267 6.272822 AGAGGCAATTATGAAGAAAACCAC 57.727 37.500 0.00 0.00 0.00 4.16
267 268 6.012745 AGAGGCAATTATGAAGAAAACCACT 58.987 36.000 0.00 0.00 0.00 4.00
268 269 6.151817 AGAGGCAATTATGAAGAAAACCACTC 59.848 38.462 0.00 0.00 0.00 3.51
269 270 6.012745 AGGCAATTATGAAGAAAACCACTCT 58.987 36.000 0.00 0.00 0.00 3.24
270 271 7.175104 AGGCAATTATGAAGAAAACCACTCTA 58.825 34.615 0.00 0.00 0.00 2.43
271 272 7.121315 AGGCAATTATGAAGAAAACCACTCTAC 59.879 37.037 0.00 0.00 0.00 2.59
272 273 7.251281 GCAATTATGAAGAAAACCACTCTACC 58.749 38.462 0.00 0.00 0.00 3.18
273 274 7.628580 GCAATTATGAAGAAAACCACTCTACCC 60.629 40.741 0.00 0.00 0.00 3.69
274 275 4.993705 ATGAAGAAAACCACTCTACCCA 57.006 40.909 0.00 0.00 0.00 4.51
275 276 4.081322 TGAAGAAAACCACTCTACCCAC 57.919 45.455 0.00 0.00 0.00 4.61
276 277 3.714798 TGAAGAAAACCACTCTACCCACT 59.285 43.478 0.00 0.00 0.00 4.00
277 278 4.903049 TGAAGAAAACCACTCTACCCACTA 59.097 41.667 0.00 0.00 0.00 2.74
278 279 5.367352 TGAAGAAAACCACTCTACCCACTAA 59.633 40.000 0.00 0.00 0.00 2.24
279 280 5.224821 AGAAAACCACTCTACCCACTAAC 57.775 43.478 0.00 0.00 0.00 2.34
280 281 4.041321 AGAAAACCACTCTACCCACTAACC 59.959 45.833 0.00 0.00 0.00 2.85
281 282 2.708037 ACCACTCTACCCACTAACCA 57.292 50.000 0.00 0.00 0.00 3.67
282 283 2.537143 ACCACTCTACCCACTAACCAG 58.463 52.381 0.00 0.00 0.00 4.00
283 284 2.111255 ACCACTCTACCCACTAACCAGA 59.889 50.000 0.00 0.00 0.00 3.86
284 285 2.761208 CCACTCTACCCACTAACCAGAG 59.239 54.545 0.00 0.00 38.92 3.35
285 286 2.761208 CACTCTACCCACTAACCAGAGG 59.239 54.545 0.00 0.00 37.62 3.69
290 291 3.863407 CCACTAACCAGAGGGAAGC 57.137 57.895 0.00 0.00 38.05 3.86
291 292 1.280457 CCACTAACCAGAGGGAAGCT 58.720 55.000 0.00 0.00 38.05 3.74
292 293 1.630878 CCACTAACCAGAGGGAAGCTT 59.369 52.381 0.00 0.00 38.05 3.74
293 294 2.838202 CCACTAACCAGAGGGAAGCTTA 59.162 50.000 0.00 0.00 38.05 3.09
294 295 3.456277 CCACTAACCAGAGGGAAGCTTAT 59.544 47.826 0.00 0.00 38.05 1.73
295 296 4.080299 CCACTAACCAGAGGGAAGCTTATT 60.080 45.833 0.00 0.00 38.05 1.40
296 297 5.501156 CACTAACCAGAGGGAAGCTTATTT 58.499 41.667 0.00 0.00 38.05 1.40
297 298 5.586643 CACTAACCAGAGGGAAGCTTATTTC 59.413 44.000 0.00 0.00 38.05 2.17
298 299 4.657814 AACCAGAGGGAAGCTTATTTCA 57.342 40.909 0.00 0.00 38.05 2.69
299 300 4.657814 ACCAGAGGGAAGCTTATTTCAA 57.342 40.909 0.00 0.00 38.05 2.69
300 301 4.593956 ACCAGAGGGAAGCTTATTTCAAG 58.406 43.478 0.00 0.00 38.05 3.02
301 302 3.379688 CCAGAGGGAAGCTTATTTCAAGC 59.620 47.826 0.00 0.71 38.97 4.01
302 303 5.979797 CCAGAGGGAAGCTTATTTCAAGCG 61.980 50.000 0.00 0.00 41.75 4.68
308 309 2.194800 GCTTATTTCAAGCGGAAGGC 57.805 50.000 0.00 0.00 44.05 4.35
309 310 1.202302 GCTTATTTCAAGCGGAAGGCC 60.202 52.381 0.00 0.00 45.17 5.19
310 311 2.091541 CTTATTTCAAGCGGAAGGCCA 58.908 47.619 5.01 0.00 45.17 5.36
311 312 2.208132 TATTTCAAGCGGAAGGCCAA 57.792 45.000 5.01 0.00 45.17 4.52
312 313 1.337118 ATTTCAAGCGGAAGGCCAAA 58.663 45.000 5.01 0.00 45.17 3.28
313 314 0.673437 TTTCAAGCGGAAGGCCAAAG 59.327 50.000 5.01 0.00 45.17 2.77
314 315 0.179004 TTCAAGCGGAAGGCCAAAGA 60.179 50.000 5.01 0.00 45.17 2.52
315 316 0.606401 TCAAGCGGAAGGCCAAAGAG 60.606 55.000 5.01 0.00 45.17 2.85
316 317 0.606401 CAAGCGGAAGGCCAAAGAGA 60.606 55.000 5.01 0.00 45.17 3.10
317 318 0.110486 AAGCGGAAGGCCAAAGAGAA 59.890 50.000 5.01 0.00 45.17 2.87
318 319 0.322008 AGCGGAAGGCCAAAGAGAAG 60.322 55.000 5.01 0.00 45.17 2.85
319 320 1.308783 GCGGAAGGCCAAAGAGAAGG 61.309 60.000 5.01 0.00 34.80 3.46
320 321 0.678048 CGGAAGGCCAAAGAGAAGGG 60.678 60.000 5.01 0.00 0.00 3.95
321 322 0.698818 GGAAGGCCAAAGAGAAGGGA 59.301 55.000 5.01 0.00 0.00 4.20
322 323 1.340502 GGAAGGCCAAAGAGAAGGGAG 60.341 57.143 5.01 0.00 0.00 4.30
323 324 1.630878 GAAGGCCAAAGAGAAGGGAGA 59.369 52.381 5.01 0.00 0.00 3.71
324 325 1.747444 AGGCCAAAGAGAAGGGAGAA 58.253 50.000 5.01 0.00 0.00 2.87
325 326 2.282900 AGGCCAAAGAGAAGGGAGAAT 58.717 47.619 5.01 0.00 0.00 2.40
326 327 2.240921 AGGCCAAAGAGAAGGGAGAATC 59.759 50.000 5.01 0.00 0.00 2.52
327 328 2.025887 GGCCAAAGAGAAGGGAGAATCA 60.026 50.000 0.00 0.00 36.25 2.57
328 329 3.013219 GCCAAAGAGAAGGGAGAATCAC 58.987 50.000 0.00 0.00 40.51 3.06
340 341 5.553290 GGGAGAATCACTTTCAACTAAGC 57.447 43.478 0.00 0.00 33.91 3.09
341 342 5.003804 GGGAGAATCACTTTCAACTAAGCA 58.996 41.667 0.00 0.00 33.91 3.91
342 343 5.649831 GGGAGAATCACTTTCAACTAAGCAT 59.350 40.000 0.00 0.00 33.91 3.79
343 344 6.823689 GGGAGAATCACTTTCAACTAAGCATA 59.176 38.462 0.00 0.00 33.91 3.14
344 345 7.336931 GGGAGAATCACTTTCAACTAAGCATAA 59.663 37.037 0.00 0.00 33.91 1.90
345 346 8.394121 GGAGAATCACTTTCAACTAAGCATAAG 58.606 37.037 0.00 0.00 36.75 1.73
346 347 9.155975 GAGAATCACTTTCAACTAAGCATAAGA 57.844 33.333 0.00 0.00 36.75 2.10
347 348 8.940952 AGAATCACTTTCAACTAAGCATAAGAC 58.059 33.333 0.00 0.00 36.75 3.01
348 349 6.706055 TCACTTTCAACTAAGCATAAGACG 57.294 37.500 0.00 0.00 0.00 4.18
349 350 6.452242 TCACTTTCAACTAAGCATAAGACGA 58.548 36.000 0.00 0.00 0.00 4.20
350 351 6.586463 TCACTTTCAACTAAGCATAAGACGAG 59.414 38.462 0.00 0.00 0.00 4.18
351 352 6.366332 CACTTTCAACTAAGCATAAGACGAGT 59.634 38.462 0.00 0.00 0.00 4.18
352 353 7.541091 CACTTTCAACTAAGCATAAGACGAGTA 59.459 37.037 0.00 0.00 0.00 2.59
353 354 8.251721 ACTTTCAACTAAGCATAAGACGAGTAT 58.748 33.333 0.00 0.00 0.00 2.12
354 355 8.630278 TTTCAACTAAGCATAAGACGAGTATC 57.370 34.615 0.00 0.00 0.00 2.24
355 356 7.329588 TCAACTAAGCATAAGACGAGTATCA 57.670 36.000 0.00 0.00 33.17 2.15
356 357 7.768240 TCAACTAAGCATAAGACGAGTATCAA 58.232 34.615 0.00 0.00 33.17 2.57
357 358 7.915923 TCAACTAAGCATAAGACGAGTATCAAG 59.084 37.037 0.00 0.00 33.17 3.02
358 359 7.336161 ACTAAGCATAAGACGAGTATCAAGT 57.664 36.000 0.00 0.00 33.17 3.16
359 360 7.773149 ACTAAGCATAAGACGAGTATCAAGTT 58.227 34.615 0.00 0.00 33.17 2.66
360 361 8.900781 ACTAAGCATAAGACGAGTATCAAGTTA 58.099 33.333 0.00 0.00 33.17 2.24
361 362 9.731819 CTAAGCATAAGACGAGTATCAAGTTAA 57.268 33.333 0.00 0.00 33.17 2.01
362 363 8.997621 AAGCATAAGACGAGTATCAAGTTAAA 57.002 30.769 0.00 0.00 33.17 1.52
363 364 8.408743 AGCATAAGACGAGTATCAAGTTAAAC 57.591 34.615 0.00 0.00 33.17 2.01
364 365 8.033038 AGCATAAGACGAGTATCAAGTTAAACA 58.967 33.333 0.00 0.00 33.17 2.83
365 366 8.653338 GCATAAGACGAGTATCAAGTTAAACAA 58.347 33.333 0.00 0.00 33.17 2.83
370 371 9.314321 AGACGAGTATCAAGTTAAACAATATGG 57.686 33.333 0.00 0.00 33.17 2.74
371 372 8.433421 ACGAGTATCAAGTTAAACAATATGGG 57.567 34.615 0.00 0.00 33.17 4.00
372 373 8.262227 ACGAGTATCAAGTTAAACAATATGGGA 58.738 33.333 0.00 0.00 33.17 4.37
373 374 8.548721 CGAGTATCAAGTTAAACAATATGGGAC 58.451 37.037 0.00 0.00 33.17 4.46
374 375 9.614792 GAGTATCAAGTTAAACAATATGGGACT 57.385 33.333 0.00 0.00 33.17 3.85
375 376 9.614792 AGTATCAAGTTAAACAATATGGGACTC 57.385 33.333 0.00 0.00 0.00 3.36
376 377 9.391006 GTATCAAGTTAAACAATATGGGACTCA 57.609 33.333 0.00 0.00 0.00 3.41
377 378 7.681939 TCAAGTTAAACAATATGGGACTCAC 57.318 36.000 0.00 0.00 0.00 3.51
378 379 6.657541 TCAAGTTAAACAATATGGGACTCACC 59.342 38.462 0.00 0.00 38.08 4.02
379 380 5.183228 AGTTAAACAATATGGGACTCACCG 58.817 41.667 0.00 0.00 40.11 4.94
380 381 2.038387 AACAATATGGGACTCACCGC 57.962 50.000 0.00 0.00 40.11 5.68
381 382 0.908910 ACAATATGGGACTCACCGCA 59.091 50.000 0.00 0.00 40.11 5.69
382 383 1.490490 ACAATATGGGACTCACCGCAT 59.510 47.619 0.00 0.00 40.11 4.73
383 384 1.875514 CAATATGGGACTCACCGCATG 59.124 52.381 0.00 0.00 40.11 4.06
384 385 1.131638 ATATGGGACTCACCGCATGT 58.868 50.000 0.00 0.00 40.11 3.21
385 386 0.464036 TATGGGACTCACCGCATGTC 59.536 55.000 0.00 0.00 40.11 3.06
386 387 1.267574 ATGGGACTCACCGCATGTCT 61.268 55.000 0.00 0.00 40.11 3.41
387 388 0.613572 TGGGACTCACCGCATGTCTA 60.614 55.000 0.00 0.00 40.11 2.59
388 389 0.753262 GGGACTCACCGCATGTCTAT 59.247 55.000 0.00 0.00 40.11 1.98
389 390 1.961394 GGGACTCACCGCATGTCTATA 59.039 52.381 0.00 0.00 40.11 1.31
390 391 2.563179 GGGACTCACCGCATGTCTATAT 59.437 50.000 0.00 0.00 40.11 0.86
391 392 3.006967 GGGACTCACCGCATGTCTATATT 59.993 47.826 0.00 0.00 40.11 1.28
392 393 3.990469 GGACTCACCGCATGTCTATATTG 59.010 47.826 0.00 0.00 0.00 1.90
393 394 4.501571 GGACTCACCGCATGTCTATATTGT 60.502 45.833 0.00 0.00 0.00 2.71
394 395 5.278808 GGACTCACCGCATGTCTATATTGTA 60.279 44.000 0.00 0.00 0.00 2.41
395 396 6.156748 ACTCACCGCATGTCTATATTGTAA 57.843 37.500 0.00 0.00 0.00 2.41
396 397 6.578944 ACTCACCGCATGTCTATATTGTAAA 58.421 36.000 0.00 0.00 0.00 2.01
397 398 7.217200 ACTCACCGCATGTCTATATTGTAAAT 58.783 34.615 0.00 0.00 0.00 1.40
398 399 7.171508 ACTCACCGCATGTCTATATTGTAAATG 59.828 37.037 0.00 0.00 0.00 2.32
399 400 6.426633 TCACCGCATGTCTATATTGTAAATGG 59.573 38.462 0.00 0.00 0.00 3.16
400 401 6.426633 CACCGCATGTCTATATTGTAAATGGA 59.573 38.462 0.00 0.00 0.00 3.41
401 402 6.426937 ACCGCATGTCTATATTGTAAATGGAC 59.573 38.462 0.00 0.00 35.90 4.02
402 403 6.650807 CCGCATGTCTATATTGTAAATGGACT 59.349 38.462 0.00 0.00 36.22 3.85
403 404 7.148573 CCGCATGTCTATATTGTAAATGGACTC 60.149 40.741 0.00 0.00 36.22 3.36
404 405 7.410835 CGCATGTCTATATTGTAAATGGACTCG 60.411 40.741 0.00 0.00 36.22 4.18
405 406 7.622256 GCATGTCTATATTGTAAATGGACTCGC 60.622 40.741 0.00 0.00 36.22 5.03
406 407 7.050970 TGTCTATATTGTAAATGGACTCGCT 57.949 36.000 0.00 0.00 36.22 4.93
407 408 8.173542 TGTCTATATTGTAAATGGACTCGCTA 57.826 34.615 0.00 0.00 36.22 4.26
408 409 8.080417 TGTCTATATTGTAAATGGACTCGCTAC 58.920 37.037 0.00 0.00 36.22 3.58
409 410 8.080417 GTCTATATTGTAAATGGACTCGCTACA 58.920 37.037 0.00 0.00 33.44 2.74
410 411 8.080417 TCTATATTGTAAATGGACTCGCTACAC 58.920 37.037 0.00 0.00 0.00 2.90
411 412 3.241067 TGTAAATGGACTCGCTACACC 57.759 47.619 0.00 0.00 0.00 4.16
412 413 2.829720 TGTAAATGGACTCGCTACACCT 59.170 45.455 0.00 0.00 0.00 4.00
413 414 4.018490 TGTAAATGGACTCGCTACACCTA 58.982 43.478 0.00 0.00 0.00 3.08
414 415 4.647853 TGTAAATGGACTCGCTACACCTAT 59.352 41.667 0.00 0.00 0.00 2.57
415 416 5.829391 TGTAAATGGACTCGCTACACCTATA 59.171 40.000 0.00 0.00 0.00 1.31
416 417 6.492429 TGTAAATGGACTCGCTACACCTATAT 59.508 38.462 0.00 0.00 0.00 0.86
417 418 5.646577 AATGGACTCGCTACACCTATATC 57.353 43.478 0.00 0.00 0.00 1.63
418 419 4.094830 TGGACTCGCTACACCTATATCA 57.905 45.455 0.00 0.00 0.00 2.15
419 420 4.072839 TGGACTCGCTACACCTATATCAG 58.927 47.826 0.00 0.00 0.00 2.90
420 421 4.073549 GGACTCGCTACACCTATATCAGT 58.926 47.826 0.00 0.00 0.00 3.41
421 422 4.083217 GGACTCGCTACACCTATATCAGTG 60.083 50.000 4.00 4.00 39.93 3.66
422 423 3.821600 ACTCGCTACACCTATATCAGTGG 59.178 47.826 9.23 0.00 38.34 4.00
423 424 3.821600 CTCGCTACACCTATATCAGTGGT 59.178 47.826 9.23 0.00 38.34 4.16
424 425 4.212716 TCGCTACACCTATATCAGTGGTT 58.787 43.478 9.23 0.00 38.34 3.67
425 426 5.379187 TCGCTACACCTATATCAGTGGTTA 58.621 41.667 9.23 0.00 38.34 2.85
426 427 5.829391 TCGCTACACCTATATCAGTGGTTAA 59.171 40.000 9.23 0.00 38.34 2.01
427 428 6.492429 TCGCTACACCTATATCAGTGGTTAAT 59.508 38.462 9.23 0.00 38.34 1.40
428 429 7.666804 TCGCTACACCTATATCAGTGGTTAATA 59.333 37.037 9.23 0.00 38.34 0.98
429 430 8.301720 CGCTACACCTATATCAGTGGTTAATAA 58.698 37.037 9.23 0.00 38.34 1.40
430 431 9.991906 GCTACACCTATATCAGTGGTTAATAAA 57.008 33.333 9.23 0.00 38.34 1.40
447 448 9.420551 GGTTAATAAAGAAGTATATCTGGACCG 57.579 37.037 0.00 0.00 0.00 4.79
450 451 8.707796 AATAAAGAAGTATATCTGGACCGAGA 57.292 34.615 0.00 0.00 0.00 4.04
451 452 6.394025 AAAGAAGTATATCTGGACCGAGAC 57.606 41.667 0.00 0.00 0.00 3.36
452 453 5.050126 AGAAGTATATCTGGACCGAGACA 57.950 43.478 0.00 0.00 0.00 3.41
453 454 4.822896 AGAAGTATATCTGGACCGAGACAC 59.177 45.833 0.00 0.00 0.00 3.67
454 455 3.488363 AGTATATCTGGACCGAGACACC 58.512 50.000 0.00 0.00 0.00 4.16
455 456 2.454336 ATATCTGGACCGAGACACCA 57.546 50.000 0.00 0.00 0.00 4.17
456 457 1.471119 TATCTGGACCGAGACACCAC 58.529 55.000 0.00 0.00 0.00 4.16
457 458 1.258445 ATCTGGACCGAGACACCACC 61.258 60.000 0.00 0.00 0.00 4.61
458 459 1.908793 CTGGACCGAGACACCACCT 60.909 63.158 0.00 0.00 0.00 4.00
459 460 1.878656 CTGGACCGAGACACCACCTC 61.879 65.000 0.00 0.00 0.00 3.85
460 461 1.906824 GGACCGAGACACCACCTCA 60.907 63.158 0.00 0.00 0.00 3.86
461 462 1.258445 GGACCGAGACACCACCTCAT 61.258 60.000 0.00 0.00 0.00 2.90
462 463 1.471119 GACCGAGACACCACCTCATA 58.529 55.000 0.00 0.00 0.00 2.15
463 464 2.032620 GACCGAGACACCACCTCATAT 58.967 52.381 0.00 0.00 0.00 1.78
464 465 2.032620 ACCGAGACACCACCTCATATC 58.967 52.381 0.00 0.00 0.00 1.63
465 466 2.311463 CCGAGACACCACCTCATATCT 58.689 52.381 0.00 0.00 0.00 1.98
466 467 3.117625 ACCGAGACACCACCTCATATCTA 60.118 47.826 0.00 0.00 0.00 1.98
467 468 3.889538 CCGAGACACCACCTCATATCTAA 59.110 47.826 0.00 0.00 0.00 2.10
468 469 4.341235 CCGAGACACCACCTCATATCTAAA 59.659 45.833 0.00 0.00 0.00 1.85
469 470 5.163447 CCGAGACACCACCTCATATCTAAAA 60.163 44.000 0.00 0.00 0.00 1.52
470 471 5.980116 CGAGACACCACCTCATATCTAAAAG 59.020 44.000 0.00 0.00 0.00 2.27
471 472 6.240549 AGACACCACCTCATATCTAAAAGG 57.759 41.667 0.00 0.00 34.94 3.11
472 473 5.726793 AGACACCACCTCATATCTAAAAGGT 59.273 40.000 0.00 0.00 42.87 3.50
473 474 6.215636 AGACACCACCTCATATCTAAAAGGTT 59.784 38.462 0.00 0.00 40.13 3.50
474 475 6.180472 ACACCACCTCATATCTAAAAGGTTG 58.820 40.000 0.00 0.00 40.13 3.77
475 476 6.180472 CACCACCTCATATCTAAAAGGTTGT 58.820 40.000 0.00 0.00 40.13 3.32
476 477 7.037873 ACACCACCTCATATCTAAAAGGTTGTA 60.038 37.037 0.00 0.00 40.13 2.41
477 478 7.280205 CACCACCTCATATCTAAAAGGTTGTAC 59.720 40.741 0.00 0.00 40.13 2.90
478 479 6.766467 CCACCTCATATCTAAAAGGTTGTACC 59.234 42.308 0.00 0.00 40.13 3.34
479 480 6.479001 CACCTCATATCTAAAAGGTTGTACCG 59.521 42.308 0.00 0.00 44.90 4.02
480 481 6.381994 ACCTCATATCTAAAAGGTTGTACCGA 59.618 38.462 0.00 0.00 44.90 4.69
481 482 7.093201 ACCTCATATCTAAAAGGTTGTACCGAA 60.093 37.037 0.00 0.00 44.90 4.30
482 483 7.438459 CCTCATATCTAAAAGGTTGTACCGAAG 59.562 40.741 0.00 0.00 44.90 3.79
521 522 9.796062 CAAAATAATTTTTGTCATGTTCCTTCG 57.204 29.630 0.00 0.00 44.33 3.79
522 523 8.532977 AAATAATTTTTGTCATGTTCCTTCGG 57.467 30.769 0.00 0.00 0.00 4.30
523 524 5.529581 AATTTTTGTCATGTTCCTTCGGT 57.470 34.783 0.00 0.00 0.00 4.69
524 525 6.642707 AATTTTTGTCATGTTCCTTCGGTA 57.357 33.333 0.00 0.00 0.00 4.02
525 526 5.682943 TTTTTGTCATGTTCCTTCGGTAG 57.317 39.130 0.00 0.00 0.00 3.18
526 527 2.380084 TGTCATGTTCCTTCGGTAGC 57.620 50.000 0.00 0.00 0.00 3.58
527 528 1.621317 TGTCATGTTCCTTCGGTAGCA 59.379 47.619 0.00 0.00 0.00 3.49
528 529 2.037902 TGTCATGTTCCTTCGGTAGCAA 59.962 45.455 0.00 0.00 0.00 3.91
529 530 2.673368 GTCATGTTCCTTCGGTAGCAAG 59.327 50.000 0.00 0.00 0.00 4.01
530 531 2.301870 TCATGTTCCTTCGGTAGCAAGT 59.698 45.455 0.00 0.00 0.00 3.16
531 532 2.450609 TGTTCCTTCGGTAGCAAGTC 57.549 50.000 0.00 0.00 0.00 3.01
532 533 1.968493 TGTTCCTTCGGTAGCAAGTCT 59.032 47.619 0.00 0.00 0.00 3.24
533 534 2.367567 TGTTCCTTCGGTAGCAAGTCTT 59.632 45.455 0.00 0.00 0.00 3.01
534 535 3.575256 TGTTCCTTCGGTAGCAAGTCTTA 59.425 43.478 0.00 0.00 0.00 2.10
535 536 3.863142 TCCTTCGGTAGCAAGTCTTAC 57.137 47.619 0.00 0.00 0.00 2.34
536 537 3.428532 TCCTTCGGTAGCAAGTCTTACT 58.571 45.455 0.00 0.00 0.00 2.24
537 538 3.830755 TCCTTCGGTAGCAAGTCTTACTT 59.169 43.478 0.00 0.00 39.39 2.24
538 539 4.282703 TCCTTCGGTAGCAAGTCTTACTTT 59.717 41.667 0.00 0.00 36.03 2.66
539 540 5.477984 TCCTTCGGTAGCAAGTCTTACTTTA 59.522 40.000 0.00 0.00 36.03 1.85
540 541 5.805994 CCTTCGGTAGCAAGTCTTACTTTAG 59.194 44.000 0.00 0.00 36.03 1.85
541 542 6.349944 CCTTCGGTAGCAAGTCTTACTTTAGA 60.350 42.308 0.00 0.00 36.03 2.10
542 543 6.770746 TCGGTAGCAAGTCTTACTTTAGAT 57.229 37.500 0.00 0.00 36.03 1.98
543 544 7.166691 TCGGTAGCAAGTCTTACTTTAGATT 57.833 36.000 0.00 0.00 36.03 2.40
544 545 7.033791 TCGGTAGCAAGTCTTACTTTAGATTG 58.966 38.462 0.00 0.00 36.03 2.67
545 546 6.812160 CGGTAGCAAGTCTTACTTTAGATTGT 59.188 38.462 0.00 0.00 36.03 2.71
546 547 7.201444 CGGTAGCAAGTCTTACTTTAGATTGTG 60.201 40.741 0.00 0.00 36.03 3.33
547 548 7.817962 GGTAGCAAGTCTTACTTTAGATTGTGA 59.182 37.037 0.00 0.00 36.03 3.58
548 549 9.372369 GTAGCAAGTCTTACTTTAGATTGTGAT 57.628 33.333 0.00 0.00 36.03 3.06
549 550 8.485976 AGCAAGTCTTACTTTAGATTGTGATC 57.514 34.615 0.00 0.00 36.03 2.92
550 551 7.550906 AGCAAGTCTTACTTTAGATTGTGATCC 59.449 37.037 0.00 0.00 36.03 3.36
551 552 7.550906 GCAAGTCTTACTTTAGATTGTGATCCT 59.449 37.037 0.00 0.00 36.03 3.24
552 553 8.877779 CAAGTCTTACTTTAGATTGTGATCCTG 58.122 37.037 0.00 0.00 36.03 3.86
553 554 7.560368 AGTCTTACTTTAGATTGTGATCCTGG 58.440 38.462 0.00 0.00 32.44 4.45
554 555 7.400339 AGTCTTACTTTAGATTGTGATCCTGGA 59.600 37.037 0.00 0.00 32.44 3.86
555 556 7.492994 GTCTTACTTTAGATTGTGATCCTGGAC 59.507 40.741 0.00 0.00 32.44 4.02
556 557 5.104259 ACTTTAGATTGTGATCCTGGACC 57.896 43.478 0.00 0.00 32.44 4.46
557 558 4.785376 ACTTTAGATTGTGATCCTGGACCT 59.215 41.667 0.00 0.00 32.44 3.85
558 559 5.104735 ACTTTAGATTGTGATCCTGGACCTC 60.105 44.000 0.00 0.00 32.44 3.85
559 560 3.127791 AGATTGTGATCCTGGACCTCT 57.872 47.619 0.00 0.00 32.44 3.69
560 561 4.271807 AGATTGTGATCCTGGACCTCTA 57.728 45.455 0.00 0.00 32.44 2.43
561 562 4.222336 AGATTGTGATCCTGGACCTCTAG 58.778 47.826 0.00 0.00 32.44 2.43
562 563 3.474798 TTGTGATCCTGGACCTCTAGT 57.525 47.619 0.00 0.00 0.00 2.57
563 564 3.474798 TGTGATCCTGGACCTCTAGTT 57.525 47.619 0.00 0.00 0.00 2.24
564 565 4.603094 TGTGATCCTGGACCTCTAGTTA 57.397 45.455 0.00 0.00 0.00 2.24
565 566 4.942944 TGTGATCCTGGACCTCTAGTTAA 58.057 43.478 0.00 0.00 0.00 2.01
566 567 4.710375 TGTGATCCTGGACCTCTAGTTAAC 59.290 45.833 0.00 0.00 0.00 2.01
567 568 4.710375 GTGATCCTGGACCTCTAGTTAACA 59.290 45.833 8.61 0.00 0.00 2.41
568 569 5.364157 GTGATCCTGGACCTCTAGTTAACAT 59.636 44.000 8.61 0.00 0.00 2.71
569 570 5.964477 TGATCCTGGACCTCTAGTTAACATT 59.036 40.000 8.61 0.00 0.00 2.71
570 571 7.069578 GTGATCCTGGACCTCTAGTTAACATTA 59.930 40.741 8.61 0.00 0.00 1.90
571 572 7.789831 TGATCCTGGACCTCTAGTTAACATTAT 59.210 37.037 8.61 0.00 0.00 1.28
572 573 7.989947 TCCTGGACCTCTAGTTAACATTATT 57.010 36.000 8.61 0.00 0.00 1.40
573 574 8.019656 TCCTGGACCTCTAGTTAACATTATTC 57.980 38.462 8.61 0.00 0.00 1.75
574 575 7.070821 TCCTGGACCTCTAGTTAACATTATTCC 59.929 40.741 8.61 6.78 0.00 3.01
575 576 6.812998 TGGACCTCTAGTTAACATTATTCCG 58.187 40.000 8.61 0.00 0.00 4.30
576 577 6.381994 TGGACCTCTAGTTAACATTATTCCGT 59.618 38.462 8.61 0.00 0.00 4.69
577 578 7.560991 TGGACCTCTAGTTAACATTATTCCGTA 59.439 37.037 8.61 0.00 0.00 4.02
578 579 7.864882 GGACCTCTAGTTAACATTATTCCGTAC 59.135 40.741 8.61 0.00 0.00 3.67
579 580 7.720442 ACCTCTAGTTAACATTATTCCGTACC 58.280 38.462 8.61 0.00 0.00 3.34
580 581 7.150640 CCTCTAGTTAACATTATTCCGTACCC 58.849 42.308 8.61 0.00 0.00 3.69
581 582 7.015001 CCTCTAGTTAACATTATTCCGTACCCT 59.985 40.741 8.61 0.00 0.00 4.34
582 583 7.945134 TCTAGTTAACATTATTCCGTACCCTC 58.055 38.462 8.61 0.00 0.00 4.30
583 584 6.803366 AGTTAACATTATTCCGTACCCTCT 57.197 37.500 8.61 0.00 0.00 3.69
584 585 7.191593 AGTTAACATTATTCCGTACCCTCTT 57.808 36.000 8.61 0.00 0.00 2.85
585 586 7.627311 AGTTAACATTATTCCGTACCCTCTTT 58.373 34.615 8.61 0.00 0.00 2.52
591 592 4.957684 ATTCCGTACCCTCTTTATCCAG 57.042 45.455 0.00 0.00 0.00 3.86
596 597 4.081309 CCGTACCCTCTTTATCCAGTTTGA 60.081 45.833 0.00 0.00 0.00 2.69
614 615 2.806434 TGAGGGCTTTGTACATGCATT 58.194 42.857 18.75 9.13 0.00 3.56
618 619 3.056607 AGGGCTTTGTACATGCATTCAAC 60.057 43.478 18.75 0.00 0.00 3.18
619 620 3.305950 GGGCTTTGTACATGCATTCAACA 60.306 43.478 18.75 0.00 0.00 3.33
628 631 7.935520 TGTACATGCATTCAACAGAAACTTAA 58.064 30.769 0.00 0.00 0.00 1.85
709 716 5.245531 CCAGTTAGGTGCAAGATAAAGTGA 58.754 41.667 0.00 0.00 0.00 3.41
710 717 5.352569 CCAGTTAGGTGCAAGATAAAGTGAG 59.647 44.000 0.00 0.00 0.00 3.51
712 721 3.356529 AGGTGCAAGATAAAGTGAGGG 57.643 47.619 0.00 0.00 0.00 4.30
755 769 8.174422 CACAAAAAGAAAACCAGGTGTTAATTG 58.826 33.333 0.00 1.84 35.67 2.32
806 820 1.449353 GCTCTGATTGGCCGATCCT 59.551 57.895 27.23 0.00 35.26 3.24
810 824 0.319900 CTGATTGGCCGATCCTACCG 60.320 60.000 27.23 9.14 35.26 4.02
815 829 2.836360 GCCGATCCTACCGTCCCA 60.836 66.667 0.00 0.00 0.00 4.37
836 851 3.615509 GATCGCCACCCCCGAAACA 62.616 63.158 0.00 0.00 38.31 2.83
842 857 0.251608 CCACCCCCGAAACAAATCCT 60.252 55.000 0.00 0.00 0.00 3.24
872 887 4.473520 CCCGCAGATCCAACGGCT 62.474 66.667 12.00 0.00 45.58 5.52
928 943 2.669569 GTCCCGCTGAAGCTTGCA 60.670 61.111 2.10 0.64 39.32 4.08
948 963 1.724582 CCTCCCAATAAAAGCCGCGG 61.725 60.000 24.05 24.05 0.00 6.46
1313 1373 1.743996 GGTCTGATCTGGTTCTTGGC 58.256 55.000 0.00 0.00 0.00 4.52
1544 1610 2.616510 CCAAGTCGCCCAAGAAGAAGAT 60.617 50.000 0.00 0.00 0.00 2.40
1626 1718 3.019799 ACTATCGTGACAGGATGAGGT 57.980 47.619 18.61 12.11 39.69 3.85
1634 1726 1.541588 GACAGGATGAGGTGTTTTGGC 59.458 52.381 0.00 0.00 39.69 4.52
1642 1734 1.048160 AGGTGTTTTGGCTGGTTGGG 61.048 55.000 0.00 0.00 0.00 4.12
1839 1944 2.224606 CTGCCTTTGCTTCAGAGACAA 58.775 47.619 0.00 0.00 38.71 3.18
1842 1947 2.163211 GCCTTTGCTTCAGAGACAATCC 59.837 50.000 0.00 0.00 33.53 3.01
1843 1948 3.415212 CCTTTGCTTCAGAGACAATCCA 58.585 45.455 0.00 0.00 0.00 3.41
1844 1949 4.015084 CCTTTGCTTCAGAGACAATCCAT 58.985 43.478 0.00 0.00 0.00 3.41
1845 1950 4.096081 CCTTTGCTTCAGAGACAATCCATC 59.904 45.833 0.00 0.00 0.00 3.51
1848 1953 5.682234 TGCTTCAGAGACAATCCATCTTA 57.318 39.130 0.00 0.00 0.00 2.10
1850 1955 7.365497 TGCTTCAGAGACAATCCATCTTATA 57.635 36.000 0.00 0.00 0.00 0.98
1851 1956 7.795047 TGCTTCAGAGACAATCCATCTTATAA 58.205 34.615 0.00 0.00 0.00 0.98
1852 1957 8.267183 TGCTTCAGAGACAATCCATCTTATAAA 58.733 33.333 0.00 0.00 0.00 1.40
1877 1992 3.851458 ACCTTCTGTCCGTTTAAACCT 57.149 42.857 12.66 0.00 0.00 3.50
1949 2543 3.071312 TGGCAAGGCAAATGACAAAATCT 59.929 39.130 0.00 0.00 31.44 2.40
1951 2545 4.516321 GGCAAGGCAAATGACAAAATCTTT 59.484 37.500 0.00 0.00 0.00 2.52
1956 2550 6.761312 AGGCAAATGACAAAATCTTTCATGA 58.239 32.000 0.00 0.00 30.26 3.07
2084 2773 4.752101 ACTGTAGAAGAATGCTTGTCACAC 59.248 41.667 0.00 0.00 33.61 3.82
2085 2774 4.702831 TGTAGAAGAATGCTTGTCACACA 58.297 39.130 0.00 0.00 33.61 3.72
2086 2775 5.122519 TGTAGAAGAATGCTTGTCACACAA 58.877 37.500 0.00 0.00 36.54 3.33
2096 2785 2.136298 TGTCACACAAGAGGGCAAAA 57.864 45.000 0.00 0.00 0.00 2.44
2147 2843 4.136796 TGCTGCCCTTCATGTATCAATAC 58.863 43.478 0.00 0.00 0.00 1.89
2244 3067 9.825972 AATAATCTCAGTAAAATGTTTCACACG 57.174 29.630 0.00 0.00 0.00 4.49
2259 3106 8.967552 TGTTTCACACGTAATGTTAAAAACTT 57.032 26.923 11.78 0.00 40.64 2.66
2313 5213 0.948678 TTTGCGCCAACTGTAACTCC 59.051 50.000 4.18 0.00 0.00 3.85
2323 5223 2.175202 ACTGTAACTCCCTGCTCTCAG 58.825 52.381 0.00 0.00 40.02 3.35
2381 5283 3.127548 CCAATGCGCATCAACTTCTAACT 59.872 43.478 25.53 0.00 0.00 2.24
2498 5404 7.434602 GTGTCGGAAATATAGAACTTGGTACTC 59.565 40.741 0.00 0.00 0.00 2.59
2550 5457 5.385198 TCATATTCTTATTTGCCCACCCTC 58.615 41.667 0.00 0.00 0.00 4.30
2767 5865 1.155042 TGAATTTTTGCGGGCATTGC 58.845 45.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.929836 GTGTTGTGCCGAATTTTGCAA 59.070 42.857 0.00 0.00 39.57 4.08
11 12 2.022129 CGACTCTCGGTGTTGTGCC 61.022 63.158 0.00 0.00 36.00 5.01
12 13 3.538841 CGACTCTCGGTGTTGTGC 58.461 61.111 0.00 0.00 36.00 4.57
21 22 2.941064 TGAACATAGGTACCGACTCTCG 59.059 50.000 6.18 0.00 40.07 4.04
22 23 4.978083 TTGAACATAGGTACCGACTCTC 57.022 45.455 6.18 2.95 0.00 3.20
23 24 5.479375 TCTTTTGAACATAGGTACCGACTCT 59.521 40.000 6.18 0.00 0.00 3.24
24 25 5.717119 TCTTTTGAACATAGGTACCGACTC 58.283 41.667 6.18 0.15 0.00 3.36
25 26 5.479375 TCTCTTTTGAACATAGGTACCGACT 59.521 40.000 6.18 0.00 0.00 4.18
26 27 5.717119 TCTCTTTTGAACATAGGTACCGAC 58.283 41.667 6.18 0.00 0.00 4.79
27 28 5.988310 TCTCTTTTGAACATAGGTACCGA 57.012 39.130 6.18 0.38 0.00 4.69
28 29 6.310711 GTCTTCTCTTTTGAACATAGGTACCG 59.689 42.308 6.18 0.00 0.00 4.02
29 30 7.159372 TGTCTTCTCTTTTGAACATAGGTACC 58.841 38.462 2.73 2.73 0.00 3.34
30 31 8.603242 TTGTCTTCTCTTTTGAACATAGGTAC 57.397 34.615 0.00 0.00 0.00 3.34
31 32 9.273016 CTTTGTCTTCTCTTTTGAACATAGGTA 57.727 33.333 0.00 0.00 0.00 3.08
32 33 7.993183 TCTTTGTCTTCTCTTTTGAACATAGGT 59.007 33.333 0.00 0.00 0.00 3.08
33 34 8.383318 TCTTTGTCTTCTCTTTTGAACATAGG 57.617 34.615 0.00 0.00 0.00 2.57
40 41 9.799106 AGGATAAATCTTTGTCTTCTCTTTTGA 57.201 29.630 0.44 0.00 0.00 2.69
77 78 9.556030 CCTTCGGTCAAAAGAAGAATTTAATAC 57.444 33.333 6.76 0.00 44.76 1.89
78 79 9.509956 TCCTTCGGTCAAAAGAAGAATTTAATA 57.490 29.630 6.76 0.00 44.76 0.98
79 80 8.404107 TCCTTCGGTCAAAAGAAGAATTTAAT 57.596 30.769 6.76 0.00 44.76 1.40
80 81 7.717875 TCTCCTTCGGTCAAAAGAAGAATTTAA 59.282 33.333 6.76 0.00 44.76 1.52
81 82 7.221450 TCTCCTTCGGTCAAAAGAAGAATTTA 58.779 34.615 6.76 0.00 44.76 1.40
82 83 6.062095 TCTCCTTCGGTCAAAAGAAGAATTT 58.938 36.000 6.76 0.00 44.76 1.82
83 84 5.621193 TCTCCTTCGGTCAAAAGAAGAATT 58.379 37.500 6.76 0.00 44.76 2.17
84 85 5.228945 TCTCCTTCGGTCAAAAGAAGAAT 57.771 39.130 6.76 0.00 44.76 2.40
85 86 4.682778 TCTCCTTCGGTCAAAAGAAGAA 57.317 40.909 6.76 0.00 44.76 2.52
86 87 4.283467 TCATCTCCTTCGGTCAAAAGAAGA 59.717 41.667 6.76 0.00 44.76 2.87
87 88 4.569943 TCATCTCCTTCGGTCAAAAGAAG 58.430 43.478 0.00 0.00 42.42 2.85
88 89 4.617253 TCATCTCCTTCGGTCAAAAGAA 57.383 40.909 0.00 0.00 0.00 2.52
89 90 4.617253 TTCATCTCCTTCGGTCAAAAGA 57.383 40.909 0.00 0.00 0.00 2.52
90 91 5.689383 TTTTCATCTCCTTCGGTCAAAAG 57.311 39.130 0.00 0.00 0.00 2.27
91 92 6.490040 AGATTTTTCATCTCCTTCGGTCAAAA 59.510 34.615 0.00 0.00 0.00 2.44
92 93 6.003950 AGATTTTTCATCTCCTTCGGTCAAA 58.996 36.000 0.00 0.00 0.00 2.69
93 94 5.560724 AGATTTTTCATCTCCTTCGGTCAA 58.439 37.500 0.00 0.00 0.00 3.18
94 95 5.165961 AGATTTTTCATCTCCTTCGGTCA 57.834 39.130 0.00 0.00 0.00 4.02
95 96 6.072452 ACAAAGATTTTTCATCTCCTTCGGTC 60.072 38.462 0.00 0.00 0.00 4.79
96 97 5.770162 ACAAAGATTTTTCATCTCCTTCGGT 59.230 36.000 0.00 0.00 0.00 4.69
97 98 6.072508 TGACAAAGATTTTTCATCTCCTTCGG 60.073 38.462 0.00 0.00 0.00 4.30
98 99 6.902341 TGACAAAGATTTTTCATCTCCTTCG 58.098 36.000 0.00 0.00 0.00 3.79
99 100 8.517878 TCATGACAAAGATTTTTCATCTCCTTC 58.482 33.333 4.39 0.00 35.92 3.46
100 101 8.413309 TCATGACAAAGATTTTTCATCTCCTT 57.587 30.769 4.39 0.00 35.92 3.36
101 102 7.668886 ACTCATGACAAAGATTTTTCATCTCCT 59.331 33.333 4.39 0.00 35.92 3.69
102 103 7.824672 ACTCATGACAAAGATTTTTCATCTCC 58.175 34.615 4.39 0.00 35.92 3.71
103 104 9.688592 AAACTCATGACAAAGATTTTTCATCTC 57.311 29.630 4.39 0.00 35.92 2.75
119 120 9.736023 GGTCATTTCCAATATTAAACTCATGAC 57.264 33.333 0.00 12.14 33.54 3.06
120 121 8.912988 GGGTCATTTCCAATATTAAACTCATGA 58.087 33.333 0.00 0.00 0.00 3.07
121 122 8.143835 GGGGTCATTTCCAATATTAAACTCATG 58.856 37.037 0.00 0.00 0.00 3.07
122 123 8.067488 AGGGGTCATTTCCAATATTAAACTCAT 58.933 33.333 0.00 0.00 0.00 2.90
123 124 7.418378 AGGGGTCATTTCCAATATTAAACTCA 58.582 34.615 0.00 0.00 0.00 3.41
124 125 7.780271 AGAGGGGTCATTTCCAATATTAAACTC 59.220 37.037 0.00 0.00 0.00 3.01
125 126 7.652554 AGAGGGGTCATTTCCAATATTAAACT 58.347 34.615 0.00 0.00 0.00 2.66
126 127 7.898014 AGAGGGGTCATTTCCAATATTAAAC 57.102 36.000 0.00 0.00 0.00 2.01
127 128 8.909423 AAAGAGGGGTCATTTCCAATATTAAA 57.091 30.769 0.00 0.00 0.00 1.52
128 129 8.533569 GAAAGAGGGGTCATTTCCAATATTAA 57.466 34.615 0.00 0.00 0.00 1.40
137 138 3.154827 TGTGGAAAGAGGGGTCATTTC 57.845 47.619 0.00 0.00 33.20 2.17
138 139 3.334881 AGATGTGGAAAGAGGGGTCATTT 59.665 43.478 0.00 0.00 0.00 2.32
139 140 2.922283 AGATGTGGAAAGAGGGGTCATT 59.078 45.455 0.00 0.00 0.00 2.57
140 141 2.566746 AGATGTGGAAAGAGGGGTCAT 58.433 47.619 0.00 0.00 0.00 3.06
141 142 2.044793 AGATGTGGAAAGAGGGGTCA 57.955 50.000 0.00 0.00 0.00 4.02
142 143 4.569719 TTAAGATGTGGAAAGAGGGGTC 57.430 45.455 0.00 0.00 0.00 4.46
143 144 5.074515 TCTTTTAAGATGTGGAAAGAGGGGT 59.925 40.000 0.00 0.00 34.28 4.95
144 145 5.570320 TCTTTTAAGATGTGGAAAGAGGGG 58.430 41.667 0.00 0.00 34.28 4.79
145 146 7.709149 AATCTTTTAAGATGTGGAAAGAGGG 57.291 36.000 5.78 0.00 44.67 4.30
165 166 9.435688 GGTAATGCCAAAAACTTGAAATAATCT 57.564 29.630 0.00 0.00 37.17 2.40
166 167 9.213799 TGGTAATGCCAAAAACTTGAAATAATC 57.786 29.630 0.00 0.00 45.94 1.75
182 183 1.922447 ACCCTTCATCTGGTAATGCCA 59.078 47.619 0.00 0.00 46.95 4.92
183 184 2.736670 ACCCTTCATCTGGTAATGCC 57.263 50.000 0.00 0.00 31.61 4.40
184 185 3.763897 ACAAACCCTTCATCTGGTAATGC 59.236 43.478 0.00 0.00 33.52 3.56
185 186 7.461182 TTTACAAACCCTTCATCTGGTAATG 57.539 36.000 0.00 0.00 33.52 1.90
186 187 6.152831 GCTTTACAAACCCTTCATCTGGTAAT 59.847 38.462 0.00 0.00 33.52 1.89
187 188 5.475564 GCTTTACAAACCCTTCATCTGGTAA 59.524 40.000 0.00 0.00 33.52 2.85
188 189 5.007682 GCTTTACAAACCCTTCATCTGGTA 58.992 41.667 0.00 0.00 33.52 3.25
189 190 3.826729 GCTTTACAAACCCTTCATCTGGT 59.173 43.478 0.00 0.00 36.06 4.00
190 191 3.826157 TGCTTTACAAACCCTTCATCTGG 59.174 43.478 0.00 0.00 0.00 3.86
191 192 5.649782 ATGCTTTACAAACCCTTCATCTG 57.350 39.130 0.00 0.00 0.00 2.90
192 193 6.485171 AGTATGCTTTACAAACCCTTCATCT 58.515 36.000 1.19 0.00 0.00 2.90
193 194 6.759497 AGTATGCTTTACAAACCCTTCATC 57.241 37.500 1.19 0.00 0.00 2.92
194 195 6.828785 CCTAGTATGCTTTACAAACCCTTCAT 59.171 38.462 0.00 0.00 0.00 2.57
195 196 6.177610 CCTAGTATGCTTTACAAACCCTTCA 58.822 40.000 0.00 0.00 0.00 3.02
196 197 5.589050 CCCTAGTATGCTTTACAAACCCTTC 59.411 44.000 0.00 0.00 0.00 3.46
197 198 5.252164 TCCCTAGTATGCTTTACAAACCCTT 59.748 40.000 0.00 0.00 0.00 3.95
198 199 4.786454 TCCCTAGTATGCTTTACAAACCCT 59.214 41.667 0.00 0.00 0.00 4.34
199 200 5.106876 TCCCTAGTATGCTTTACAAACCC 57.893 43.478 0.00 0.00 0.00 4.11
200 201 8.919777 ATATTCCCTAGTATGCTTTACAAACC 57.080 34.615 0.00 0.00 0.00 3.27
204 205 9.720769 GCTTTATATTCCCTAGTATGCTTTACA 57.279 33.333 0.00 0.00 0.00 2.41
205 206 9.720769 TGCTTTATATTCCCTAGTATGCTTTAC 57.279 33.333 0.00 0.00 0.00 2.01
207 208 9.813826 ATTGCTTTATATTCCCTAGTATGCTTT 57.186 29.630 0.00 0.00 0.00 3.51
208 209 9.813826 AATTGCTTTATATTCCCTAGTATGCTT 57.186 29.630 0.00 0.00 0.00 3.91
209 210 9.454859 GAATTGCTTTATATTCCCTAGTATGCT 57.545 33.333 0.00 0.00 0.00 3.79
210 211 9.231297 TGAATTGCTTTATATTCCCTAGTATGC 57.769 33.333 0.00 0.00 31.29 3.14
214 215 9.071276 CATGTGAATTGCTTTATATTCCCTAGT 57.929 33.333 0.00 0.00 31.29 2.57
215 216 8.517878 CCATGTGAATTGCTTTATATTCCCTAG 58.482 37.037 0.00 0.00 31.29 3.02
216 217 8.004215 ACCATGTGAATTGCTTTATATTCCCTA 58.996 33.333 0.00 0.00 31.29 3.53
217 218 6.840705 ACCATGTGAATTGCTTTATATTCCCT 59.159 34.615 0.00 0.00 31.29 4.20
218 219 7.054491 ACCATGTGAATTGCTTTATATTCCC 57.946 36.000 0.00 0.00 31.29 3.97
219 220 9.066892 TCTACCATGTGAATTGCTTTATATTCC 57.933 33.333 0.00 0.00 31.29 3.01
221 222 9.071276 CCTCTACCATGTGAATTGCTTTATATT 57.929 33.333 0.00 0.00 0.00 1.28
222 223 7.175641 GCCTCTACCATGTGAATTGCTTTATAT 59.824 37.037 0.00 0.00 0.00 0.86
223 224 6.486657 GCCTCTACCATGTGAATTGCTTTATA 59.513 38.462 0.00 0.00 0.00 0.98
224 225 5.300286 GCCTCTACCATGTGAATTGCTTTAT 59.700 40.000 0.00 0.00 0.00 1.40
225 226 4.640201 GCCTCTACCATGTGAATTGCTTTA 59.360 41.667 0.00 0.00 0.00 1.85
226 227 3.445096 GCCTCTACCATGTGAATTGCTTT 59.555 43.478 0.00 0.00 0.00 3.51
227 228 3.019564 GCCTCTACCATGTGAATTGCTT 58.980 45.455 0.00 0.00 0.00 3.91
228 229 2.025981 TGCCTCTACCATGTGAATTGCT 60.026 45.455 0.00 0.00 0.00 3.91
229 230 2.368439 TGCCTCTACCATGTGAATTGC 58.632 47.619 0.00 0.00 0.00 3.56
230 231 5.587388 AATTGCCTCTACCATGTGAATTG 57.413 39.130 0.00 0.00 0.00 2.32
231 232 7.062322 TCATAATTGCCTCTACCATGTGAATT 58.938 34.615 0.00 0.00 0.00 2.17
232 233 6.604171 TCATAATTGCCTCTACCATGTGAAT 58.396 36.000 0.00 0.00 0.00 2.57
233 234 6.000246 TCATAATTGCCTCTACCATGTGAA 58.000 37.500 0.00 0.00 0.00 3.18
234 235 5.628797 TCATAATTGCCTCTACCATGTGA 57.371 39.130 0.00 0.00 0.00 3.58
235 236 6.057533 TCTTCATAATTGCCTCTACCATGTG 58.942 40.000 0.00 0.00 0.00 3.21
236 237 6.252599 TCTTCATAATTGCCTCTACCATGT 57.747 37.500 0.00 0.00 0.00 3.21
237 238 7.572523 TTTCTTCATAATTGCCTCTACCATG 57.427 36.000 0.00 0.00 0.00 3.66
238 239 7.068716 GGTTTTCTTCATAATTGCCTCTACCAT 59.931 37.037 0.00 0.00 0.00 3.55
239 240 6.377146 GGTTTTCTTCATAATTGCCTCTACCA 59.623 38.462 0.00 0.00 0.00 3.25
240 241 6.377146 TGGTTTTCTTCATAATTGCCTCTACC 59.623 38.462 0.00 0.00 0.00 3.18
241 242 7.121315 AGTGGTTTTCTTCATAATTGCCTCTAC 59.879 37.037 0.00 0.00 0.00 2.59
242 243 7.175104 AGTGGTTTTCTTCATAATTGCCTCTA 58.825 34.615 0.00 0.00 0.00 2.43
243 244 6.012745 AGTGGTTTTCTTCATAATTGCCTCT 58.987 36.000 0.00 0.00 0.00 3.69
244 245 6.151817 AGAGTGGTTTTCTTCATAATTGCCTC 59.848 38.462 0.00 0.00 0.00 4.70
245 246 6.012745 AGAGTGGTTTTCTTCATAATTGCCT 58.987 36.000 0.00 0.00 0.00 4.75
246 247 6.272822 AGAGTGGTTTTCTTCATAATTGCC 57.727 37.500 0.00 0.00 0.00 4.52
247 248 7.251281 GGTAGAGTGGTTTTCTTCATAATTGC 58.749 38.462 0.00 0.00 0.00 3.56
248 249 7.393234 TGGGTAGAGTGGTTTTCTTCATAATTG 59.607 37.037 0.00 0.00 0.00 2.32
249 250 7.393515 GTGGGTAGAGTGGTTTTCTTCATAATT 59.606 37.037 0.00 0.00 0.00 1.40
250 251 6.884836 GTGGGTAGAGTGGTTTTCTTCATAAT 59.115 38.462 0.00 0.00 0.00 1.28
251 252 6.043938 AGTGGGTAGAGTGGTTTTCTTCATAA 59.956 38.462 0.00 0.00 0.00 1.90
252 253 5.546499 AGTGGGTAGAGTGGTTTTCTTCATA 59.454 40.000 0.00 0.00 0.00 2.15
253 254 4.351111 AGTGGGTAGAGTGGTTTTCTTCAT 59.649 41.667 0.00 0.00 0.00 2.57
254 255 3.714798 AGTGGGTAGAGTGGTTTTCTTCA 59.285 43.478 0.00 0.00 0.00 3.02
255 256 4.353383 AGTGGGTAGAGTGGTTTTCTTC 57.647 45.455 0.00 0.00 0.00 2.87
256 257 5.455755 GGTTAGTGGGTAGAGTGGTTTTCTT 60.456 44.000 0.00 0.00 0.00 2.52
257 258 4.041321 GGTTAGTGGGTAGAGTGGTTTTCT 59.959 45.833 0.00 0.00 0.00 2.52
258 259 4.202388 TGGTTAGTGGGTAGAGTGGTTTTC 60.202 45.833 0.00 0.00 0.00 2.29
259 260 3.717913 TGGTTAGTGGGTAGAGTGGTTTT 59.282 43.478 0.00 0.00 0.00 2.43
260 261 3.320129 TGGTTAGTGGGTAGAGTGGTTT 58.680 45.455 0.00 0.00 0.00 3.27
261 262 2.904434 CTGGTTAGTGGGTAGAGTGGTT 59.096 50.000 0.00 0.00 0.00 3.67
262 263 2.111255 TCTGGTTAGTGGGTAGAGTGGT 59.889 50.000 0.00 0.00 0.00 4.16
263 264 2.761208 CTCTGGTTAGTGGGTAGAGTGG 59.239 54.545 0.00 0.00 32.31 4.00
264 265 2.761208 CCTCTGGTTAGTGGGTAGAGTG 59.239 54.545 0.00 0.00 34.61 3.51
265 266 3.103080 CCTCTGGTTAGTGGGTAGAGT 57.897 52.381 0.00 0.00 34.61 3.24
272 273 1.280457 AGCTTCCCTCTGGTTAGTGG 58.720 55.000 0.00 0.00 37.33 4.00
273 274 4.762289 ATAAGCTTCCCTCTGGTTAGTG 57.238 45.455 0.00 0.00 31.16 2.74
274 275 5.250774 TGAAATAAGCTTCCCTCTGGTTAGT 59.749 40.000 0.00 0.00 31.16 2.24
275 276 5.745227 TGAAATAAGCTTCCCTCTGGTTAG 58.255 41.667 0.00 0.00 31.16 2.34
276 277 5.772393 TGAAATAAGCTTCCCTCTGGTTA 57.228 39.130 0.00 0.00 0.00 2.85
277 278 4.657814 TGAAATAAGCTTCCCTCTGGTT 57.342 40.909 0.00 0.00 0.00 3.67
278 279 4.593956 CTTGAAATAAGCTTCCCTCTGGT 58.406 43.478 0.00 0.00 0.00 4.00
279 280 3.379688 GCTTGAAATAAGCTTCCCTCTGG 59.620 47.826 0.00 0.00 40.01 3.86
280 281 3.064545 CGCTTGAAATAAGCTTCCCTCTG 59.935 47.826 0.00 0.00 40.94 3.35
281 282 3.274288 CGCTTGAAATAAGCTTCCCTCT 58.726 45.455 0.00 0.00 40.94 3.69
282 283 2.356069 CCGCTTGAAATAAGCTTCCCTC 59.644 50.000 0.00 0.00 40.94 4.30
283 284 2.026262 TCCGCTTGAAATAAGCTTCCCT 60.026 45.455 0.00 0.00 40.94 4.20
284 285 2.365582 TCCGCTTGAAATAAGCTTCCC 58.634 47.619 0.00 0.00 40.94 3.97
285 286 3.181496 CCTTCCGCTTGAAATAAGCTTCC 60.181 47.826 0.00 0.00 40.94 3.46
286 287 3.732169 GCCTTCCGCTTGAAATAAGCTTC 60.732 47.826 0.00 0.00 40.94 3.86
287 288 2.164422 GCCTTCCGCTTGAAATAAGCTT 59.836 45.455 3.48 3.48 40.94 3.74
288 289 1.745653 GCCTTCCGCTTGAAATAAGCT 59.254 47.619 9.61 0.00 40.94 3.74
289 290 1.202302 GGCCTTCCGCTTGAAATAAGC 60.202 52.381 0.00 1.70 39.77 3.09
290 291 2.091541 TGGCCTTCCGCTTGAAATAAG 58.908 47.619 3.32 0.00 37.74 1.73
291 292 2.208132 TGGCCTTCCGCTTGAAATAA 57.792 45.000 3.32 0.00 37.74 1.40
292 293 2.208132 TTGGCCTTCCGCTTGAAATA 57.792 45.000 3.32 0.00 37.74 1.40
293 294 1.273327 CTTTGGCCTTCCGCTTGAAAT 59.727 47.619 3.32 0.00 37.74 2.17
294 295 0.673437 CTTTGGCCTTCCGCTTGAAA 59.327 50.000 3.32 0.00 37.74 2.69
295 296 0.179004 TCTTTGGCCTTCCGCTTGAA 60.179 50.000 3.32 0.00 37.74 2.69
296 297 0.606401 CTCTTTGGCCTTCCGCTTGA 60.606 55.000 3.32 0.00 37.74 3.02
297 298 0.606401 TCTCTTTGGCCTTCCGCTTG 60.606 55.000 3.32 0.00 37.74 4.01
298 299 0.110486 TTCTCTTTGGCCTTCCGCTT 59.890 50.000 3.32 0.00 37.74 4.68
299 300 0.322008 CTTCTCTTTGGCCTTCCGCT 60.322 55.000 3.32 0.00 37.74 5.52
300 301 1.308783 CCTTCTCTTTGGCCTTCCGC 61.309 60.000 3.32 0.00 34.14 5.54
301 302 0.678048 CCCTTCTCTTTGGCCTTCCG 60.678 60.000 3.32 0.00 34.14 4.30
302 303 0.698818 TCCCTTCTCTTTGGCCTTCC 59.301 55.000 3.32 0.00 0.00 3.46
303 304 1.630878 TCTCCCTTCTCTTTGGCCTTC 59.369 52.381 3.32 0.00 0.00 3.46
304 305 1.747444 TCTCCCTTCTCTTTGGCCTT 58.253 50.000 3.32 0.00 0.00 4.35
305 306 1.747444 TTCTCCCTTCTCTTTGGCCT 58.253 50.000 3.32 0.00 0.00 5.19
306 307 2.025887 TGATTCTCCCTTCTCTTTGGCC 60.026 50.000 0.00 0.00 0.00 5.36
307 308 3.013219 GTGATTCTCCCTTCTCTTTGGC 58.987 50.000 0.00 0.00 0.00 4.52
308 309 4.566426 AGTGATTCTCCCTTCTCTTTGG 57.434 45.455 0.00 0.00 0.00 3.28
309 310 6.000219 TGAAAGTGATTCTCCCTTCTCTTTG 59.000 40.000 5.11 0.00 36.40 2.77
310 311 6.192970 TGAAAGTGATTCTCCCTTCTCTTT 57.807 37.500 0.00 0.00 37.99 2.52
311 312 5.832539 TGAAAGTGATTCTCCCTTCTCTT 57.167 39.130 0.00 0.00 38.92 2.85
312 313 5.309282 AGTTGAAAGTGATTCTCCCTTCTCT 59.691 40.000 0.00 0.00 38.92 3.10
313 314 5.555966 AGTTGAAAGTGATTCTCCCTTCTC 58.444 41.667 0.00 0.00 38.92 2.87
314 315 5.574970 AGTTGAAAGTGATTCTCCCTTCT 57.425 39.130 0.00 0.00 38.92 2.85
315 316 6.128145 GCTTAGTTGAAAGTGATTCTCCCTTC 60.128 42.308 0.00 0.00 38.92 3.46
316 317 5.707764 GCTTAGTTGAAAGTGATTCTCCCTT 59.292 40.000 0.00 0.00 38.92 3.95
317 318 5.221925 TGCTTAGTTGAAAGTGATTCTCCCT 60.222 40.000 0.00 0.00 38.92 4.20
318 319 5.003804 TGCTTAGTTGAAAGTGATTCTCCC 58.996 41.667 0.00 0.00 38.92 4.30
319 320 6.749923 ATGCTTAGTTGAAAGTGATTCTCC 57.250 37.500 0.00 0.00 38.92 3.71
320 321 9.155975 TCTTATGCTTAGTTGAAAGTGATTCTC 57.844 33.333 0.00 0.00 38.92 2.87
321 322 8.940952 GTCTTATGCTTAGTTGAAAGTGATTCT 58.059 33.333 0.00 0.00 38.92 2.40
322 323 7.900352 CGTCTTATGCTTAGTTGAAAGTGATTC 59.100 37.037 0.00 0.00 38.60 2.52
323 324 7.602644 TCGTCTTATGCTTAGTTGAAAGTGATT 59.397 33.333 0.00 0.00 0.00 2.57
324 325 7.097192 TCGTCTTATGCTTAGTTGAAAGTGAT 58.903 34.615 0.00 0.00 0.00 3.06
325 326 6.452242 TCGTCTTATGCTTAGTTGAAAGTGA 58.548 36.000 0.00 0.00 0.00 3.41
326 327 6.366332 ACTCGTCTTATGCTTAGTTGAAAGTG 59.634 38.462 0.00 0.00 0.00 3.16
327 328 6.456501 ACTCGTCTTATGCTTAGTTGAAAGT 58.543 36.000 0.00 0.00 0.00 2.66
328 329 6.952935 ACTCGTCTTATGCTTAGTTGAAAG 57.047 37.500 0.00 0.00 0.00 2.62
329 330 8.248253 TGATACTCGTCTTATGCTTAGTTGAAA 58.752 33.333 0.00 0.00 0.00 2.69
330 331 7.768240 TGATACTCGTCTTATGCTTAGTTGAA 58.232 34.615 0.00 0.00 0.00 2.69
331 332 7.329588 TGATACTCGTCTTATGCTTAGTTGA 57.670 36.000 0.00 0.00 0.00 3.18
332 333 7.702772 ACTTGATACTCGTCTTATGCTTAGTTG 59.297 37.037 0.00 0.00 0.00 3.16
333 334 7.773149 ACTTGATACTCGTCTTATGCTTAGTT 58.227 34.615 0.00 0.00 0.00 2.24
334 335 7.336161 ACTTGATACTCGTCTTATGCTTAGT 57.664 36.000 0.00 0.00 0.00 2.24
335 336 9.731819 TTAACTTGATACTCGTCTTATGCTTAG 57.268 33.333 0.00 0.00 0.00 2.18
337 338 8.870879 GTTTAACTTGATACTCGTCTTATGCTT 58.129 33.333 0.00 0.00 0.00 3.91
338 339 8.033038 TGTTTAACTTGATACTCGTCTTATGCT 58.967 33.333 0.00 0.00 0.00 3.79
339 340 8.181487 TGTTTAACTTGATACTCGTCTTATGC 57.819 34.615 0.00 0.00 0.00 3.14
344 345 9.314321 CCATATTGTTTAACTTGATACTCGTCT 57.686 33.333 0.00 0.00 0.00 4.18
345 346 8.548721 CCCATATTGTTTAACTTGATACTCGTC 58.451 37.037 0.00 0.00 0.00 4.20
346 347 8.262227 TCCCATATTGTTTAACTTGATACTCGT 58.738 33.333 0.00 0.00 0.00 4.18
347 348 8.548721 GTCCCATATTGTTTAACTTGATACTCG 58.451 37.037 0.00 0.00 0.00 4.18
348 349 9.614792 AGTCCCATATTGTTTAACTTGATACTC 57.385 33.333 0.00 0.00 0.00 2.59
349 350 9.614792 GAGTCCCATATTGTTTAACTTGATACT 57.385 33.333 0.00 0.00 0.00 2.12
350 351 9.391006 TGAGTCCCATATTGTTTAACTTGATAC 57.609 33.333 0.00 0.00 0.00 2.24
351 352 9.391006 GTGAGTCCCATATTGTTTAACTTGATA 57.609 33.333 0.00 0.00 0.00 2.15
352 353 7.339466 GGTGAGTCCCATATTGTTTAACTTGAT 59.661 37.037 0.00 0.00 0.00 2.57
353 354 6.657541 GGTGAGTCCCATATTGTTTAACTTGA 59.342 38.462 0.00 0.00 0.00 3.02
354 355 6.403200 CGGTGAGTCCCATATTGTTTAACTTG 60.403 42.308 0.00 0.00 0.00 3.16
355 356 5.646360 CGGTGAGTCCCATATTGTTTAACTT 59.354 40.000 0.00 0.00 0.00 2.66
356 357 5.183228 CGGTGAGTCCCATATTGTTTAACT 58.817 41.667 0.00 0.00 0.00 2.24
357 358 4.201881 GCGGTGAGTCCCATATTGTTTAAC 60.202 45.833 0.00 0.00 0.00 2.01
358 359 3.942748 GCGGTGAGTCCCATATTGTTTAA 59.057 43.478 0.00 0.00 0.00 1.52
359 360 3.055021 TGCGGTGAGTCCCATATTGTTTA 60.055 43.478 0.00 0.00 0.00 2.01
360 361 2.290641 TGCGGTGAGTCCCATATTGTTT 60.291 45.455 0.00 0.00 0.00 2.83
361 362 1.280710 TGCGGTGAGTCCCATATTGTT 59.719 47.619 0.00 0.00 0.00 2.83
362 363 0.908910 TGCGGTGAGTCCCATATTGT 59.091 50.000 0.00 0.00 0.00 2.71
363 364 1.875514 CATGCGGTGAGTCCCATATTG 59.124 52.381 0.00 0.00 0.00 1.90
364 365 1.490490 ACATGCGGTGAGTCCCATATT 59.510 47.619 0.00 0.00 0.00 1.28
365 366 1.070758 GACATGCGGTGAGTCCCATAT 59.929 52.381 0.00 0.00 0.00 1.78
366 367 0.464036 GACATGCGGTGAGTCCCATA 59.536 55.000 0.00 0.00 0.00 2.74
367 368 1.221840 GACATGCGGTGAGTCCCAT 59.778 57.895 0.00 0.00 0.00 4.00
368 369 0.613572 TAGACATGCGGTGAGTCCCA 60.614 55.000 0.00 0.00 32.82 4.37
369 370 0.753262 ATAGACATGCGGTGAGTCCC 59.247 55.000 0.00 0.00 32.82 4.46
370 371 3.944055 ATATAGACATGCGGTGAGTCC 57.056 47.619 0.00 0.00 32.82 3.85
371 372 4.621991 ACAATATAGACATGCGGTGAGTC 58.378 43.478 0.00 0.00 0.00 3.36
372 373 4.672587 ACAATATAGACATGCGGTGAGT 57.327 40.909 0.00 0.00 0.00 3.41
373 374 7.360353 CCATTTACAATATAGACATGCGGTGAG 60.360 40.741 0.00 0.00 0.00 3.51
374 375 6.426633 CCATTTACAATATAGACATGCGGTGA 59.573 38.462 0.00 0.00 0.00 4.02
375 376 6.426633 TCCATTTACAATATAGACATGCGGTG 59.573 38.462 0.00 0.00 0.00 4.94
376 377 6.426937 GTCCATTTACAATATAGACATGCGGT 59.573 38.462 0.00 0.00 0.00 5.68
377 378 6.650807 AGTCCATTTACAATATAGACATGCGG 59.349 38.462 0.00 0.00 0.00 5.69
378 379 7.410835 CGAGTCCATTTACAATATAGACATGCG 60.411 40.741 0.00 0.00 0.00 4.73
379 380 7.622256 GCGAGTCCATTTACAATATAGACATGC 60.622 40.741 0.00 0.00 0.00 4.06
380 381 7.600375 AGCGAGTCCATTTACAATATAGACATG 59.400 37.037 0.00 0.00 0.00 3.21
381 382 7.671302 AGCGAGTCCATTTACAATATAGACAT 58.329 34.615 0.00 0.00 0.00 3.06
382 383 7.050970 AGCGAGTCCATTTACAATATAGACA 57.949 36.000 0.00 0.00 0.00 3.41
383 384 8.080417 TGTAGCGAGTCCATTTACAATATAGAC 58.920 37.037 0.00 0.00 0.00 2.59
384 385 8.080417 GTGTAGCGAGTCCATTTACAATATAGA 58.920 37.037 0.00 0.00 0.00 1.98
385 386 7.328737 GGTGTAGCGAGTCCATTTACAATATAG 59.671 40.741 0.00 0.00 0.00 1.31
386 387 7.014905 AGGTGTAGCGAGTCCATTTACAATATA 59.985 37.037 0.00 0.00 0.00 0.86
387 388 5.989777 GGTGTAGCGAGTCCATTTACAATAT 59.010 40.000 0.00 0.00 0.00 1.28
388 389 5.128171 AGGTGTAGCGAGTCCATTTACAATA 59.872 40.000 0.00 0.00 0.00 1.90
389 390 4.081087 AGGTGTAGCGAGTCCATTTACAAT 60.081 41.667 0.00 0.00 0.00 2.71
390 391 3.259876 AGGTGTAGCGAGTCCATTTACAA 59.740 43.478 0.00 0.00 0.00 2.41
391 392 2.829720 AGGTGTAGCGAGTCCATTTACA 59.170 45.455 0.00 0.00 0.00 2.41
392 393 3.521947 AGGTGTAGCGAGTCCATTTAC 57.478 47.619 0.00 0.00 0.00 2.01
393 394 6.717997 TGATATAGGTGTAGCGAGTCCATTTA 59.282 38.462 0.00 0.00 0.00 1.40
394 395 5.538813 TGATATAGGTGTAGCGAGTCCATTT 59.461 40.000 0.00 0.00 0.00 2.32
395 396 5.077564 TGATATAGGTGTAGCGAGTCCATT 58.922 41.667 0.00 0.00 0.00 3.16
396 397 4.663334 TGATATAGGTGTAGCGAGTCCAT 58.337 43.478 0.00 0.00 0.00 3.41
397 398 4.072839 CTGATATAGGTGTAGCGAGTCCA 58.927 47.826 0.00 0.00 0.00 4.02
398 399 4.073549 ACTGATATAGGTGTAGCGAGTCC 58.926 47.826 0.00 0.00 0.00 3.85
399 400 4.083217 CCACTGATATAGGTGTAGCGAGTC 60.083 50.000 0.00 0.00 0.00 3.36
400 401 3.821600 CCACTGATATAGGTGTAGCGAGT 59.178 47.826 0.00 0.00 0.00 4.18
401 402 3.821600 ACCACTGATATAGGTGTAGCGAG 59.178 47.826 0.00 0.00 33.57 5.03
402 403 3.828921 ACCACTGATATAGGTGTAGCGA 58.171 45.455 0.00 0.00 33.57 4.93
403 404 4.585955 AACCACTGATATAGGTGTAGCG 57.414 45.455 6.74 0.00 35.42 4.26
404 405 9.991906 TTTATTAACCACTGATATAGGTGTAGC 57.008 33.333 6.74 0.00 35.42 3.58
421 422 9.420551 CGGTCCAGATATACTTCTTTATTAACC 57.579 37.037 0.00 0.00 0.00 2.85
424 425 9.803507 TCTCGGTCCAGATATACTTCTTTATTA 57.196 33.333 0.00 0.00 0.00 0.98
425 426 8.578151 GTCTCGGTCCAGATATACTTCTTTATT 58.422 37.037 0.00 0.00 0.00 1.40
426 427 7.724506 TGTCTCGGTCCAGATATACTTCTTTAT 59.275 37.037 0.00 0.00 0.00 1.40
427 428 7.013083 GTGTCTCGGTCCAGATATACTTCTTTA 59.987 40.741 0.00 0.00 0.00 1.85
428 429 5.892119 TGTCTCGGTCCAGATATACTTCTTT 59.108 40.000 0.00 0.00 0.00 2.52
429 430 5.299782 GTGTCTCGGTCCAGATATACTTCTT 59.700 44.000 0.00 0.00 0.00 2.52
430 431 4.822896 GTGTCTCGGTCCAGATATACTTCT 59.177 45.833 0.00 0.00 0.00 2.85
431 432 4.023021 GGTGTCTCGGTCCAGATATACTTC 60.023 50.000 0.00 0.00 0.00 3.01
432 433 3.890147 GGTGTCTCGGTCCAGATATACTT 59.110 47.826 0.00 0.00 0.00 2.24
433 434 3.117625 TGGTGTCTCGGTCCAGATATACT 60.118 47.826 0.00 0.00 0.00 2.12
434 435 3.004524 GTGGTGTCTCGGTCCAGATATAC 59.995 52.174 0.00 0.00 31.54 1.47
435 436 3.220110 GTGGTGTCTCGGTCCAGATATA 58.780 50.000 0.00 0.00 31.54 0.86
436 437 2.032620 GTGGTGTCTCGGTCCAGATAT 58.967 52.381 0.00 0.00 31.54 1.63
437 438 1.471119 GTGGTGTCTCGGTCCAGATA 58.529 55.000 0.00 0.00 31.54 1.98
438 439 1.258445 GGTGGTGTCTCGGTCCAGAT 61.258 60.000 0.00 0.00 31.54 2.90
439 440 1.906824 GGTGGTGTCTCGGTCCAGA 60.907 63.158 0.00 0.00 31.54 3.86
440 441 1.878656 GAGGTGGTGTCTCGGTCCAG 61.879 65.000 0.00 0.00 31.54 3.86
441 442 1.906824 GAGGTGGTGTCTCGGTCCA 60.907 63.158 0.00 0.00 0.00 4.02
442 443 1.258445 ATGAGGTGGTGTCTCGGTCC 61.258 60.000 0.00 0.00 34.19 4.46
443 444 1.471119 TATGAGGTGGTGTCTCGGTC 58.529 55.000 0.00 0.00 34.19 4.79
444 445 2.032620 GATATGAGGTGGTGTCTCGGT 58.967 52.381 0.00 0.00 34.19 4.69
445 446 2.311463 AGATATGAGGTGGTGTCTCGG 58.689 52.381 0.00 0.00 34.19 4.63
446 447 5.515797 TTTAGATATGAGGTGGTGTCTCG 57.484 43.478 0.00 0.00 34.19 4.04
447 448 6.127026 ACCTTTTAGATATGAGGTGGTGTCTC 60.127 42.308 0.00 0.00 40.84 3.36
448 449 5.726793 ACCTTTTAGATATGAGGTGGTGTCT 59.273 40.000 0.00 0.00 40.84 3.41
449 450 5.990668 ACCTTTTAGATATGAGGTGGTGTC 58.009 41.667 0.00 0.00 40.84 3.67
450 451 6.180472 CAACCTTTTAGATATGAGGTGGTGT 58.820 40.000 0.00 0.00 41.49 4.16
451 452 6.180472 ACAACCTTTTAGATATGAGGTGGTG 58.820 40.000 0.77 0.00 43.21 4.17
452 453 6.388619 ACAACCTTTTAGATATGAGGTGGT 57.611 37.500 0.00 0.00 41.49 4.16
453 454 6.766467 GGTACAACCTTTTAGATATGAGGTGG 59.234 42.308 0.00 0.00 41.49 4.61
454 455 6.479001 CGGTACAACCTTTTAGATATGAGGTG 59.521 42.308 0.00 0.00 41.49 4.00
455 456 6.381994 TCGGTACAACCTTTTAGATATGAGGT 59.618 38.462 0.00 0.00 44.11 3.85
456 457 6.812998 TCGGTACAACCTTTTAGATATGAGG 58.187 40.000 0.00 0.00 35.66 3.86
457 458 7.438459 CCTTCGGTACAACCTTTTAGATATGAG 59.562 40.741 0.00 0.00 35.66 2.90
458 459 7.093201 ACCTTCGGTACAACCTTTTAGATATGA 60.093 37.037 0.00 0.00 35.66 2.15
459 460 7.046033 ACCTTCGGTACAACCTTTTAGATATG 58.954 38.462 0.00 0.00 35.66 1.78
460 461 7.191593 ACCTTCGGTACAACCTTTTAGATAT 57.808 36.000 0.00 0.00 35.66 1.63
461 462 6.610075 ACCTTCGGTACAACCTTTTAGATA 57.390 37.500 0.00 0.00 35.66 1.98
462 463 5.494390 ACCTTCGGTACAACCTTTTAGAT 57.506 39.130 0.00 0.00 35.66 1.98
463 464 4.961438 ACCTTCGGTACAACCTTTTAGA 57.039 40.909 0.00 0.00 35.66 2.10
464 465 6.930722 TCTTTACCTTCGGTACAACCTTTTAG 59.069 38.462 0.00 0.00 37.97 1.85
465 466 6.825610 TCTTTACCTTCGGTACAACCTTTTA 58.174 36.000 0.00 0.00 37.97 1.52
466 467 5.683681 TCTTTACCTTCGGTACAACCTTTT 58.316 37.500 0.00 0.00 37.97 2.27
467 468 5.294734 TCTTTACCTTCGGTACAACCTTT 57.705 39.130 0.00 0.00 37.97 3.11
468 469 4.961438 TCTTTACCTTCGGTACAACCTT 57.039 40.909 0.00 0.00 37.97 3.50
469 470 5.481473 TGTATCTTTACCTTCGGTACAACCT 59.519 40.000 0.00 0.00 37.97 3.50
470 471 5.723295 TGTATCTTTACCTTCGGTACAACC 58.277 41.667 0.00 0.00 37.97 3.77
471 472 7.037438 TGATGTATCTTTACCTTCGGTACAAC 58.963 38.462 0.00 0.00 37.97 3.32
472 473 7.172868 TGATGTATCTTTACCTTCGGTACAA 57.827 36.000 0.00 0.00 37.97 2.41
473 474 6.778834 TGATGTATCTTTACCTTCGGTACA 57.221 37.500 0.00 0.00 37.97 2.90
474 475 8.483307 TTTTGATGTATCTTTACCTTCGGTAC 57.517 34.615 0.00 0.00 37.97 3.34
476 477 9.675464 TTATTTTGATGTATCTTTACCTTCGGT 57.325 29.630 0.00 0.00 40.16 4.69
511 512 9.361969 AAGTAAGACTTGCTACCGAAGGAACAT 62.362 40.741 6.21 0.00 44.68 2.71
512 513 8.140198 AAGTAAGACTTGCTACCGAAGGAACA 62.140 42.308 6.21 0.00 44.68 3.18
513 514 5.796089 AAGTAAGACTTGCTACCGAAGGAAC 60.796 44.000 6.21 0.00 44.68 3.62
514 515 4.282703 AAGTAAGACTTGCTACCGAAGGAA 59.717 41.667 6.21 0.00 44.68 3.36
515 516 3.830755 AAGTAAGACTTGCTACCGAAGGA 59.169 43.478 6.21 0.00 44.68 3.36
516 517 4.189639 AAGTAAGACTTGCTACCGAAGG 57.810 45.455 6.21 0.00 46.52 3.46
517 518 6.618811 TCTAAAGTAAGACTTGCTACCGAAG 58.381 40.000 6.21 1.24 38.66 3.79
518 519 6.579666 TCTAAAGTAAGACTTGCTACCGAA 57.420 37.500 6.21 0.00 38.66 4.30
519 520 6.770746 ATCTAAAGTAAGACTTGCTACCGA 57.229 37.500 6.21 3.99 38.66 4.69
520 521 6.812160 ACAATCTAAAGTAAGACTTGCTACCG 59.188 38.462 6.21 0.00 38.66 4.02
521 522 7.817962 TCACAATCTAAAGTAAGACTTGCTACC 59.182 37.037 6.21 0.00 38.66 3.18
522 523 8.758633 TCACAATCTAAAGTAAGACTTGCTAC 57.241 34.615 6.21 0.00 38.66 3.58
523 524 9.587772 GATCACAATCTAAAGTAAGACTTGCTA 57.412 33.333 6.21 0.00 38.66 3.49
524 525 7.550906 GGATCACAATCTAAAGTAAGACTTGCT 59.449 37.037 0.00 0.00 33.83 3.91
525 526 7.550906 AGGATCACAATCTAAAGTAAGACTTGC 59.449 37.037 0.00 0.00 33.83 4.01
526 527 8.877779 CAGGATCACAATCTAAAGTAAGACTTG 58.122 37.037 0.00 0.00 33.83 3.16
527 528 8.043710 CCAGGATCACAATCTAAAGTAAGACTT 58.956 37.037 0.00 0.00 34.46 3.01
528 529 7.400339 TCCAGGATCACAATCTAAAGTAAGACT 59.600 37.037 0.00 0.00 32.12 3.24
529 530 7.492994 GTCCAGGATCACAATCTAAAGTAAGAC 59.507 40.741 0.00 0.00 32.12 3.01
530 531 7.364762 GGTCCAGGATCACAATCTAAAGTAAGA 60.365 40.741 0.00 0.00 32.12 2.10
531 532 6.763610 GGTCCAGGATCACAATCTAAAGTAAG 59.236 42.308 0.00 0.00 32.12 2.34
532 533 6.443849 AGGTCCAGGATCACAATCTAAAGTAA 59.556 38.462 1.43 0.00 32.12 2.24
533 534 5.964477 AGGTCCAGGATCACAATCTAAAGTA 59.036 40.000 1.43 0.00 32.12 2.24
534 535 4.785376 AGGTCCAGGATCACAATCTAAAGT 59.215 41.667 1.43 0.00 32.12 2.66
535 536 5.130145 AGAGGTCCAGGATCACAATCTAAAG 59.870 44.000 1.43 0.00 32.12 1.85
536 537 5.032846 AGAGGTCCAGGATCACAATCTAAA 58.967 41.667 1.43 0.00 32.12 1.85
537 538 4.624913 AGAGGTCCAGGATCACAATCTAA 58.375 43.478 1.43 0.00 32.12 2.10
538 539 4.271807 AGAGGTCCAGGATCACAATCTA 57.728 45.455 1.43 0.00 32.12 1.98
539 540 3.127791 AGAGGTCCAGGATCACAATCT 57.872 47.619 1.43 0.00 32.12 2.40
540 541 3.964031 ACTAGAGGTCCAGGATCACAATC 59.036 47.826 1.43 0.00 0.00 2.67
541 542 4.000928 ACTAGAGGTCCAGGATCACAAT 57.999 45.455 1.43 0.00 0.00 2.71
542 543 3.474798 ACTAGAGGTCCAGGATCACAA 57.525 47.619 1.43 0.00 0.00 3.33
543 544 3.474798 AACTAGAGGTCCAGGATCACA 57.525 47.619 1.43 0.00 0.00 3.58
544 545 4.710375 TGTTAACTAGAGGTCCAGGATCAC 59.290 45.833 1.43 0.00 0.00 3.06
545 546 4.942944 TGTTAACTAGAGGTCCAGGATCA 58.057 43.478 1.43 0.00 0.00 2.92
546 547 6.487299 AATGTTAACTAGAGGTCCAGGATC 57.513 41.667 7.22 0.00 0.00 3.36
547 548 8.568617 AATAATGTTAACTAGAGGTCCAGGAT 57.431 34.615 7.22 0.00 0.00 3.24
548 549 7.070821 GGAATAATGTTAACTAGAGGTCCAGGA 59.929 40.741 7.22 0.00 0.00 3.86
549 550 7.217906 GGAATAATGTTAACTAGAGGTCCAGG 58.782 42.308 7.22 0.00 0.00 4.45
550 551 6.924060 CGGAATAATGTTAACTAGAGGTCCAG 59.076 42.308 7.22 1.32 0.00 3.86
551 552 6.381994 ACGGAATAATGTTAACTAGAGGTCCA 59.618 38.462 7.22 0.00 0.00 4.02
552 553 6.814043 ACGGAATAATGTTAACTAGAGGTCC 58.186 40.000 7.22 6.05 0.00 4.46
553 554 7.864882 GGTACGGAATAATGTTAACTAGAGGTC 59.135 40.741 7.22 0.00 0.00 3.85
554 555 7.201947 GGGTACGGAATAATGTTAACTAGAGGT 60.202 40.741 7.22 0.00 0.00 3.85
555 556 7.015001 AGGGTACGGAATAATGTTAACTAGAGG 59.985 40.741 7.22 0.00 0.00 3.69
556 557 7.949434 AGGGTACGGAATAATGTTAACTAGAG 58.051 38.462 7.22 0.00 0.00 2.43
557 558 7.781693 AGAGGGTACGGAATAATGTTAACTAGA 59.218 37.037 7.22 0.00 0.00 2.43
558 559 7.949434 AGAGGGTACGGAATAATGTTAACTAG 58.051 38.462 7.22 0.00 0.00 2.57
559 560 7.902920 AGAGGGTACGGAATAATGTTAACTA 57.097 36.000 7.22 0.00 0.00 2.24
560 561 6.803366 AGAGGGTACGGAATAATGTTAACT 57.197 37.500 7.22 0.00 0.00 2.24
561 562 7.854557 AAAGAGGGTACGGAATAATGTTAAC 57.145 36.000 0.00 0.00 0.00 2.01
562 563 9.768662 GATAAAGAGGGTACGGAATAATGTTAA 57.231 33.333 0.00 0.00 0.00 2.01
563 564 8.370182 GGATAAAGAGGGTACGGAATAATGTTA 58.630 37.037 0.00 0.00 0.00 2.41
564 565 7.147444 TGGATAAAGAGGGTACGGAATAATGTT 60.147 37.037 0.00 0.00 0.00 2.71
565 566 6.328148 TGGATAAAGAGGGTACGGAATAATGT 59.672 38.462 0.00 0.00 0.00 2.71
566 567 6.765403 TGGATAAAGAGGGTACGGAATAATG 58.235 40.000 0.00 0.00 0.00 1.90
567 568 6.557633 ACTGGATAAAGAGGGTACGGAATAAT 59.442 38.462 0.00 0.00 0.00 1.28
568 569 5.901276 ACTGGATAAAGAGGGTACGGAATAA 59.099 40.000 0.00 0.00 0.00 1.40
569 570 5.461327 ACTGGATAAAGAGGGTACGGAATA 58.539 41.667 0.00 0.00 0.00 1.75
570 571 4.296056 ACTGGATAAAGAGGGTACGGAAT 58.704 43.478 0.00 0.00 0.00 3.01
571 572 3.716431 ACTGGATAAAGAGGGTACGGAA 58.284 45.455 0.00 0.00 0.00 4.30
572 573 3.393426 ACTGGATAAAGAGGGTACGGA 57.607 47.619 0.00 0.00 0.00 4.69
573 574 4.081309 TCAAACTGGATAAAGAGGGTACGG 60.081 45.833 0.00 0.00 0.00 4.02
574 575 5.080969 TCAAACTGGATAAAGAGGGTACG 57.919 43.478 0.00 0.00 0.00 3.67
575 576 5.429130 CCTCAAACTGGATAAAGAGGGTAC 58.571 45.833 0.00 0.00 39.12 3.34
576 577 5.693769 CCTCAAACTGGATAAAGAGGGTA 57.306 43.478 0.00 0.00 39.12 3.69
577 578 4.576330 CCTCAAACTGGATAAAGAGGGT 57.424 45.455 0.00 0.00 39.12 4.34
579 580 3.054065 AGCCCTCAAACTGGATAAAGAGG 60.054 47.826 0.00 0.00 41.72 3.69
580 581 4.227864 AGCCCTCAAACTGGATAAAGAG 57.772 45.455 0.00 0.00 0.00 2.85
581 582 4.657814 AAGCCCTCAAACTGGATAAAGA 57.342 40.909 0.00 0.00 0.00 2.52
582 583 4.524328 ACAAAGCCCTCAAACTGGATAAAG 59.476 41.667 0.00 0.00 0.00 1.85
583 584 4.479158 ACAAAGCCCTCAAACTGGATAAA 58.521 39.130 0.00 0.00 0.00 1.40
584 585 4.112634 ACAAAGCCCTCAAACTGGATAA 57.887 40.909 0.00 0.00 0.00 1.75
585 586 3.806949 ACAAAGCCCTCAAACTGGATA 57.193 42.857 0.00 0.00 0.00 2.59
591 592 2.295909 TGCATGTACAAAGCCCTCAAAC 59.704 45.455 17.72 0.00 0.00 2.93
596 597 2.806434 TGAATGCATGTACAAAGCCCT 58.194 42.857 17.72 7.48 0.00 5.19
599 600 4.797471 TCTGTTGAATGCATGTACAAAGC 58.203 39.130 14.69 14.69 0.00 3.51
689 695 4.636206 CCCTCACTTTATCTTGCACCTAAC 59.364 45.833 0.00 0.00 0.00 2.34
694 700 5.703876 CTTTTCCCTCACTTTATCTTGCAC 58.296 41.667 0.00 0.00 0.00 4.57
709 716 3.448660 GTGCATCATTTAGGCTTTTCCCT 59.551 43.478 0.00 0.00 35.40 4.20
710 717 3.195396 TGTGCATCATTTAGGCTTTTCCC 59.805 43.478 0.00 0.00 35.40 3.97
712 721 6.783892 TTTTGTGCATCATTTAGGCTTTTC 57.216 33.333 0.00 0.00 35.40 2.29
755 769 3.762779 CATCACGAAGGGATTTTGCTTC 58.237 45.455 0.00 0.00 0.00 3.86
810 824 4.832608 GGTGGCGATCCGTGGGAC 62.833 72.222 0.00 0.00 32.98 4.46
830 845 0.168128 GGCGGTGAGGATTTGTTTCG 59.832 55.000 0.00 0.00 0.00 3.46
831 846 0.526211 GGGCGGTGAGGATTTGTTTC 59.474 55.000 0.00 0.00 0.00 2.78
836 851 1.299976 GAGTGGGCGGTGAGGATTT 59.700 57.895 0.00 0.00 0.00 2.17
928 943 1.029947 CGCGGCTTTTATTGGGAGGT 61.030 55.000 0.00 0.00 0.00 3.85
966 981 1.159713 CGCTGCTCTGTGTTTGTGGA 61.160 55.000 0.00 0.00 0.00 4.02
1078 1116 0.832135 TCACCGCCTTCTTCCTGTCT 60.832 55.000 0.00 0.00 0.00 3.41
1313 1373 1.081892 CTCCAACACCTGCGATTCAG 58.918 55.000 0.00 0.00 42.49 3.02
1544 1610 1.073319 TTGGGGGACTTGGTGGAGA 60.073 57.895 0.00 0.00 0.00 3.71
1626 1718 1.045911 GGACCCAACCAGCCAAAACA 61.046 55.000 0.00 0.00 0.00 2.83
1634 1726 0.762418 TACACACAGGACCCAACCAG 59.238 55.000 0.00 0.00 0.00 4.00
1642 1734 3.933332 GACTAGGCAATTACACACAGGAC 59.067 47.826 0.00 0.00 0.00 3.85
1715 1815 7.332926 CCATTCCGGACATAAATCAGAGATAAG 59.667 40.741 1.83 0.00 36.56 1.73
1843 1948 9.901172 ACGGACAGAAGGTAAAATTTATAAGAT 57.099 29.630 0.00 0.00 0.00 2.40
1844 1949 9.729281 AACGGACAGAAGGTAAAATTTATAAGA 57.271 29.630 0.00 0.00 0.00 2.10
1850 1955 7.922278 GGTTTAAACGGACAGAAGGTAAAATTT 59.078 33.333 12.07 0.00 0.00 1.82
1851 1956 7.286087 AGGTTTAAACGGACAGAAGGTAAAATT 59.714 33.333 12.07 0.00 0.00 1.82
1852 1957 6.774170 AGGTTTAAACGGACAGAAGGTAAAAT 59.226 34.615 12.07 0.00 0.00 1.82
1855 1970 5.294734 AGGTTTAAACGGACAGAAGGTAA 57.705 39.130 12.07 0.00 0.00 2.85
1862 1977 5.779806 CTGTCATAGGTTTAAACGGACAG 57.220 43.478 27.43 27.43 43.01 3.51
1908 2502 3.560896 GCCATGTTTTGTGTGAAAGCAAT 59.439 39.130 0.00 0.00 0.00 3.56
1918 2512 1.950828 TTGCCTTGCCATGTTTTGTG 58.049 45.000 0.00 0.00 0.00 3.33
1949 2543 6.687081 AAGTTTAGTTCGGTTGTCATGAAA 57.313 33.333 0.00 0.00 0.00 2.69
1951 2545 5.008217 CCAAAGTTTAGTTCGGTTGTCATGA 59.992 40.000 0.00 0.00 0.00 3.07
1956 2550 6.293698 ACTATCCAAAGTTTAGTTCGGTTGT 58.706 36.000 0.00 0.00 0.00 3.32
2107 2796 6.294176 GGGCAGCATCGACTTGATTATTTATT 60.294 38.462 0.00 0.00 34.13 1.40
2108 2797 5.182001 GGGCAGCATCGACTTGATTATTTAT 59.818 40.000 0.00 0.00 34.13 1.40
2109 2798 4.515191 GGGCAGCATCGACTTGATTATTTA 59.485 41.667 0.00 0.00 34.13 1.40
2184 2895 7.941431 TTTCTCCAGTGGTAACTTTGTAAAA 57.059 32.000 9.54 0.00 32.98 1.52
2185 2896 7.941431 TTTTCTCCAGTGGTAACTTTGTAAA 57.059 32.000 9.54 0.00 32.98 2.01
2186 2897 9.629878 TTATTTTCTCCAGTGGTAACTTTGTAA 57.370 29.630 9.54 0.00 32.98 2.41
2187 2898 9.059260 GTTATTTTCTCCAGTGGTAACTTTGTA 57.941 33.333 9.54 0.00 32.98 2.41
2188 2899 7.558444 TGTTATTTTCTCCAGTGGTAACTTTGT 59.442 33.333 9.54 0.00 32.98 2.83
2189 2900 7.936584 TGTTATTTTCTCCAGTGGTAACTTTG 58.063 34.615 9.54 0.00 32.98 2.77
2190 2901 7.230712 CCTGTTATTTTCTCCAGTGGTAACTTT 59.769 37.037 9.54 0.00 32.98 2.66
2191 2902 6.715264 CCTGTTATTTTCTCCAGTGGTAACTT 59.285 38.462 9.54 0.00 32.98 2.66
2192 2903 6.183361 ACCTGTTATTTTCTCCAGTGGTAACT 60.183 38.462 9.54 0.00 36.98 2.24
2193 2904 6.002082 ACCTGTTATTTTCTCCAGTGGTAAC 58.998 40.000 9.54 9.78 0.00 2.50
2194 2905 6.195600 ACCTGTTATTTTCTCCAGTGGTAA 57.804 37.500 9.54 2.20 0.00 2.85
2195 2906 5.836024 ACCTGTTATTTTCTCCAGTGGTA 57.164 39.130 9.54 0.00 0.00 3.25
2196 2907 4.724279 ACCTGTTATTTTCTCCAGTGGT 57.276 40.909 9.54 0.00 0.00 4.16
2197 2908 8.801882 TTATTACCTGTTATTTTCTCCAGTGG 57.198 34.615 1.40 1.40 0.00 4.00
2259 3106 4.503685 AGGGGCAAGAGGGATACTTATA 57.496 45.455 0.00 0.00 0.00 0.98
2313 5213 6.541278 TGATAACATTTGATTCTGAGAGCAGG 59.459 38.462 0.00 0.00 42.53 4.85
2407 5310 2.208132 ATAATGTCCCCGTGTTTGCA 57.792 45.000 0.00 0.00 0.00 4.08
2537 5443 1.970640 GACAAAAGAGGGTGGGCAAAT 59.029 47.619 0.00 0.00 0.00 2.32
2631 5551 8.409358 AGGTTCAGTTAGCAATTAGTGAATTT 57.591 30.769 0.00 0.00 32.73 1.82
2646 5566 7.540474 AGAAGACATGTCTAAGGTTCAGTTA 57.460 36.000 28.10 0.00 39.39 2.24
2691 5776 2.294263 TGGGGGTAAGAGGGAAGCTATT 60.294 50.000 0.00 0.00 0.00 1.73
2698 5796 0.398098 GACGATGGGGGTAAGAGGGA 60.398 60.000 0.00 0.00 0.00 4.20
2767 5865 3.804325 CCAATACACATAGACTGAAGGCG 59.196 47.826 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.