Multiple sequence alignment - TraesCS1B01G355200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G355200 chr1B 100.000 3082 0 0 1 3082 584653251 584656332 0.000000e+00 5692.0
1 TraesCS1B01G355200 chr1B 97.248 2471 57 2 1 2462 584602817 584605285 0.000000e+00 4178.0
2 TraesCS1B01G355200 chr1B 87.642 1853 155 38 661 2459 584620083 584621915 0.000000e+00 2085.0
3 TraesCS1B01G355200 chr1B 87.921 1813 145 38 661 2419 584574722 584576514 0.000000e+00 2067.0
4 TraesCS1B01G355200 chr1B 86.789 1688 122 48 724 2351 584779033 584780679 0.000000e+00 1788.0
5 TraesCS1B01G355200 chr1B 89.096 1394 105 28 978 2351 584798105 584799471 0.000000e+00 1688.0
6 TraesCS1B01G355200 chr1B 84.965 1736 131 62 724 2382 584761733 584763415 0.000000e+00 1640.0
7 TraesCS1B01G355200 chr1B 94.620 948 49 1 1515 2462 584566230 584567175 0.000000e+00 1467.0
8 TraesCS1B01G355200 chr1B 95.737 563 22 2 2518 3079 90225480 90226041 0.000000e+00 905.0
9 TraesCS1B01G355200 chr1B 95.438 548 22 3 2521 3066 584664944 584665490 0.000000e+00 870.0
10 TraesCS1B01G355200 chr1B 99.405 168 1 0 1 168 584602433 584602600 3.860000e-79 305.0
11 TraesCS1B01G355200 chr1B 88.571 140 9 5 724 861 584797403 584797537 2.460000e-36 163.0
12 TraesCS1B01G355200 chr1B 85.185 135 6 4 479 611 584875386 584875508 3.230000e-25 126.0
13 TraesCS1B01G355200 chr1B 85.185 135 6 4 479 611 584901789 584901911 3.230000e-25 126.0
14 TraesCS1B01G355200 chr1D 88.312 1754 128 41 737 2462 433060330 433062034 0.000000e+00 2032.0
15 TraesCS1B01G355200 chr1D 85.033 608 52 22 664 1264 433143078 433142503 1.590000e-162 582.0
16 TraesCS1B01G355200 chr1D 84.667 150 10 6 483 627 433060146 433060287 1.490000e-28 137.0
17 TraesCS1B01G355200 chr1A 85.558 2015 166 63 479 2462 531366567 531368487 0.000000e+00 1993.0
18 TraesCS1B01G355200 chr1A 90.386 1425 107 23 978 2383 531513133 531514546 0.000000e+00 1845.0
19 TraesCS1B01G355200 chr1A 88.652 282 23 6 2179 2459 531515020 531515293 4.920000e-88 335.0
20 TraesCS1B01G355200 chr1A 85.185 135 6 4 479 611 531510335 531510457 3.230000e-25 126.0
21 TraesCS1B01G355200 chr1A 87.324 71 5 3 22 88 531509910 531509980 9.160000e-11 78.7
22 TraesCS1B01G355200 chr3A 84.382 1684 166 50 681 2311 628220524 628218885 0.000000e+00 1563.0
23 TraesCS1B01G355200 chr3A 93.097 565 35 3 2519 3079 748251497 748250933 0.000000e+00 824.0
24 TraesCS1B01G355200 chr3B 83.920 1704 174 51 664 2311 647944246 647942587 0.000000e+00 1537.0
25 TraesCS1B01G355200 chr3B 93.085 564 36 2 2519 3079 692434171 692434734 0.000000e+00 822.0
26 TraesCS1B01G355200 chr3B 81.628 860 86 37 664 1489 647969653 647968832 0.000000e+00 647.0
27 TraesCS1B01G355200 chr6B 94.849 563 28 1 2518 3079 16535713 16535151 0.000000e+00 878.0
28 TraesCS1B01G355200 chr6B 95.455 550 24 1 2519 3067 16519173 16518624 0.000000e+00 876.0
29 TraesCS1B01G355200 chr6B 95.446 549 23 2 2519 3066 151894661 151895208 0.000000e+00 874.0
30 TraesCS1B01G355200 chr6B 93.961 563 33 1 2518 3079 151889462 151890024 0.000000e+00 850.0
31 TraesCS1B01G355200 chr6A 94.316 563 30 2 2519 3079 2052164 2052726 0.000000e+00 861.0
32 TraesCS1B01G355200 chr2A 90.566 53 3 1 546 596 779164732 779164680 5.510000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G355200 chr1B 584653251 584656332 3081 False 5692.000 5692 100.00000 1 3082 1 chr1B.!!$F5 3081
1 TraesCS1B01G355200 chr1B 584602433 584605285 2852 False 2241.500 4178 98.32650 1 2462 2 chr1B.!!$F11 2461
2 TraesCS1B01G355200 chr1B 584620083 584621915 1832 False 2085.000 2085 87.64200 661 2459 1 chr1B.!!$F4 1798
3 TraesCS1B01G355200 chr1B 584574722 584576514 1792 False 2067.000 2067 87.92100 661 2419 1 chr1B.!!$F3 1758
4 TraesCS1B01G355200 chr1B 584779033 584780679 1646 False 1788.000 1788 86.78900 724 2351 1 chr1B.!!$F8 1627
5 TraesCS1B01G355200 chr1B 584761733 584763415 1682 False 1640.000 1640 84.96500 724 2382 1 chr1B.!!$F7 1658
6 TraesCS1B01G355200 chr1B 584566230 584567175 945 False 1467.000 1467 94.62000 1515 2462 1 chr1B.!!$F2 947
7 TraesCS1B01G355200 chr1B 584797403 584799471 2068 False 925.500 1688 88.83350 724 2351 2 chr1B.!!$F12 1627
8 TraesCS1B01G355200 chr1B 90225480 90226041 561 False 905.000 905 95.73700 2518 3079 1 chr1B.!!$F1 561
9 TraesCS1B01G355200 chr1B 584664944 584665490 546 False 870.000 870 95.43800 2521 3066 1 chr1B.!!$F6 545
10 TraesCS1B01G355200 chr1D 433060146 433062034 1888 False 1084.500 2032 86.48950 483 2462 2 chr1D.!!$F1 1979
11 TraesCS1B01G355200 chr1D 433142503 433143078 575 True 582.000 582 85.03300 664 1264 1 chr1D.!!$R1 600
12 TraesCS1B01G355200 chr1A 531366567 531368487 1920 False 1993.000 1993 85.55800 479 2462 1 chr1A.!!$F1 1983
13 TraesCS1B01G355200 chr1A 531509910 531515293 5383 False 596.175 1845 87.88675 22 2459 4 chr1A.!!$F2 2437
14 TraesCS1B01G355200 chr3A 628218885 628220524 1639 True 1563.000 1563 84.38200 681 2311 1 chr3A.!!$R1 1630
15 TraesCS1B01G355200 chr3A 748250933 748251497 564 True 824.000 824 93.09700 2519 3079 1 chr3A.!!$R2 560
16 TraesCS1B01G355200 chr3B 647942587 647944246 1659 True 1537.000 1537 83.92000 664 2311 1 chr3B.!!$R1 1647
17 TraesCS1B01G355200 chr3B 692434171 692434734 563 False 822.000 822 93.08500 2519 3079 1 chr3B.!!$F1 560
18 TraesCS1B01G355200 chr3B 647968832 647969653 821 True 647.000 647 81.62800 664 1489 1 chr3B.!!$R2 825
19 TraesCS1B01G355200 chr6B 16535151 16535713 562 True 878.000 878 94.84900 2518 3079 1 chr6B.!!$R2 561
20 TraesCS1B01G355200 chr6B 16518624 16519173 549 True 876.000 876 95.45500 2519 3067 1 chr6B.!!$R1 548
21 TraesCS1B01G355200 chr6B 151894661 151895208 547 False 874.000 874 95.44600 2519 3066 1 chr6B.!!$F2 547
22 TraesCS1B01G355200 chr6B 151889462 151890024 562 False 850.000 850 93.96100 2518 3079 1 chr6B.!!$F1 561
23 TraesCS1B01G355200 chr6A 2052164 2052726 562 False 861.000 861 94.31600 2519 3079 1 chr6A.!!$F1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 4244 8.58072 GCATACACTTGATCTCTCTTCCTATAA 58.419 37.037 0.0 0.0 0.0 0.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2470 6590 0.489567 AGAGGTTCCACTGTCCTCCT 59.51 55.0 9.05 0.97 46.15 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
953 4244 8.580720 GCATACACTTGATCTCTCTTCCTATAA 58.419 37.037 0.00 0.00 0.00 0.98
1358 4710 2.915659 ACTCCGTTCAGCCCGACA 60.916 61.111 0.00 0.00 0.00 4.35
1520 4881 1.751927 CATCCTCAGCAGGGGCAAC 60.752 63.158 0.00 0.00 44.61 4.17
1615 4979 1.952133 CGCCGACGTCAAACCTCAA 60.952 57.895 17.16 0.00 33.53 3.02
1646 5010 1.808133 GCTAGCTTCGTCATCAAGGGG 60.808 57.143 7.70 0.00 0.00 4.79
1716 5080 1.118965 TTCCCACTGCTCGTCCTTCA 61.119 55.000 0.00 0.00 0.00 3.02
1877 5241 3.243336 CAGGCAGTACTACAAGAACGTC 58.757 50.000 0.00 0.00 0.00 4.34
1985 5349 2.203938 GGGTGGTGGGAGGACAGA 60.204 66.667 0.00 0.00 0.00 3.41
2003 5367 1.139853 AGATTCGAGAAGGCCATGGTC 59.860 52.381 8.79 8.79 0.00 4.02
2069 5433 1.366111 GGAAGAACTGCCGCGCAATA 61.366 55.000 8.75 0.00 38.41 1.90
2087 5451 8.273557 CGCGCAATAAATCACTACTAATAAGTT 58.726 33.333 8.75 0.00 37.15 2.66
2095 5481 5.974108 TCACTACTAATAAGTTGGGCAGTC 58.026 41.667 0.00 0.00 37.15 3.51
2268 6380 2.989166 GCCAAGCTACAGAATTGTTTGC 59.011 45.455 0.00 0.00 38.76 3.68
2269 6381 3.305608 GCCAAGCTACAGAATTGTTTGCT 60.306 43.478 0.00 0.00 43.12 3.91
2383 6500 6.023334 AGGATCTAGGATGCTTCCAAAAAT 57.977 37.500 19.98 8.15 45.30 1.82
2420 6540 3.194116 CCTCAGCTGGTGCATAAAACATT 59.806 43.478 15.13 0.00 42.74 2.71
2421 6541 4.398988 CCTCAGCTGGTGCATAAAACATTA 59.601 41.667 15.13 0.00 42.74 1.90
2426 6546 5.925969 AGCTGGTGCATAAAACATTAACAAC 59.074 36.000 0.00 0.00 42.74 3.32
2431 6551 6.346199 GGTGCATAAAACATTAACAACGTTGG 60.346 38.462 30.34 15.50 0.00 3.77
2435 6555 7.570324 GCATAAAACATTAACAACGTTGGCATT 60.570 33.333 30.34 18.52 0.00 3.56
2439 6559 5.833082 ACATTAACAACGTTGGCATTAACA 58.167 33.333 30.34 8.29 0.00 2.41
2452 6572 4.221703 TGGCATTAACAATGACCGGAAAAT 59.778 37.500 9.46 0.00 46.69 1.82
2462 6582 2.621055 TGACCGGAAAATGAACTGGTTG 59.379 45.455 9.46 0.00 44.55 3.77
2463 6583 2.621526 GACCGGAAAATGAACTGGTTGT 59.378 45.455 9.46 0.00 44.55 3.32
2464 6584 3.816523 GACCGGAAAATGAACTGGTTGTA 59.183 43.478 9.46 0.00 44.55 2.41
2465 6585 4.403734 ACCGGAAAATGAACTGGTTGTAT 58.596 39.130 9.46 0.00 42.30 2.29
2466 6586 4.217550 ACCGGAAAATGAACTGGTTGTATG 59.782 41.667 9.46 0.00 42.30 2.39
2467 6587 4.380444 CCGGAAAATGAACTGGTTGTATGG 60.380 45.833 0.00 0.00 0.00 2.74
2468 6588 4.217550 CGGAAAATGAACTGGTTGTATGGT 59.782 41.667 0.00 0.00 0.00 3.55
2469 6589 5.278758 CGGAAAATGAACTGGTTGTATGGTT 60.279 40.000 0.00 0.00 0.00 3.67
2470 6590 6.072397 CGGAAAATGAACTGGTTGTATGGTTA 60.072 38.462 0.00 0.00 0.00 2.85
2471 6591 7.312899 GGAAAATGAACTGGTTGTATGGTTAG 58.687 38.462 0.00 0.00 0.00 2.34
2472 6592 6.834168 AAATGAACTGGTTGTATGGTTAGG 57.166 37.500 0.00 0.00 0.00 2.69
2473 6593 5.772393 ATGAACTGGTTGTATGGTTAGGA 57.228 39.130 0.00 0.00 0.00 2.94
2474 6594 5.160607 TGAACTGGTTGTATGGTTAGGAG 57.839 43.478 0.00 0.00 0.00 3.69
2475 6595 4.019681 TGAACTGGTTGTATGGTTAGGAGG 60.020 45.833 0.00 0.00 0.00 4.30
2476 6596 3.798515 ACTGGTTGTATGGTTAGGAGGA 58.201 45.455 0.00 0.00 0.00 3.71
2477 6597 3.518303 ACTGGTTGTATGGTTAGGAGGAC 59.482 47.826 0.00 0.00 0.00 3.85
2478 6598 3.517901 CTGGTTGTATGGTTAGGAGGACA 59.482 47.826 0.00 0.00 0.00 4.02
2479 6599 3.517901 TGGTTGTATGGTTAGGAGGACAG 59.482 47.826 0.00 0.00 0.00 3.51
2480 6600 3.518303 GGTTGTATGGTTAGGAGGACAGT 59.482 47.826 0.00 0.00 0.00 3.55
2481 6601 4.504858 GTTGTATGGTTAGGAGGACAGTG 58.495 47.826 0.00 0.00 0.00 3.66
2482 6602 3.104512 TGTATGGTTAGGAGGACAGTGG 58.895 50.000 0.00 0.00 0.00 4.00
2483 6603 2.642171 ATGGTTAGGAGGACAGTGGA 57.358 50.000 0.00 0.00 0.00 4.02
2484 6604 2.409064 TGGTTAGGAGGACAGTGGAA 57.591 50.000 0.00 0.00 0.00 3.53
2485 6605 1.975680 TGGTTAGGAGGACAGTGGAAC 59.024 52.381 0.00 0.00 0.00 3.62
2486 6606 1.278413 GGTTAGGAGGACAGTGGAACC 59.722 57.143 0.00 0.00 37.80 3.62
2487 6607 2.258109 GTTAGGAGGACAGTGGAACCT 58.742 52.381 5.66 5.66 37.80 3.50
2488 6608 2.233305 TAGGAGGACAGTGGAACCTC 57.767 55.000 18.61 18.61 46.44 3.85
2489 6609 0.489567 AGGAGGACAGTGGAACCTCT 59.510 55.000 22.88 12.52 46.39 3.69
2490 6610 1.717077 AGGAGGACAGTGGAACCTCTA 59.283 52.381 22.88 0.00 46.39 2.43
2491 6611 2.104170 GGAGGACAGTGGAACCTCTAG 58.896 57.143 22.88 0.00 46.39 2.43
2492 6612 2.557901 GGAGGACAGTGGAACCTCTAGT 60.558 54.545 22.88 0.00 46.39 2.57
2493 6613 2.756207 GAGGACAGTGGAACCTCTAGTC 59.244 54.545 19.18 12.43 44.54 2.59
2494 6614 1.826096 GGACAGTGGAACCTCTAGTCC 59.174 57.143 18.54 18.54 37.80 3.85
2495 6615 2.526432 GACAGTGGAACCTCTAGTCCA 58.474 52.381 0.00 0.00 37.80 4.02
2498 6618 1.640917 GTGGAACCTCTAGTCCACCA 58.359 55.000 16.04 6.65 44.91 4.17
2499 6619 1.975680 GTGGAACCTCTAGTCCACCAA 59.024 52.381 16.04 0.00 44.91 3.67
2500 6620 2.028020 GTGGAACCTCTAGTCCACCAAG 60.028 54.545 16.04 0.00 44.91 3.61
2501 6621 1.555533 GGAACCTCTAGTCCACCAAGG 59.444 57.143 0.00 0.00 39.47 3.61
2502 6622 2.258109 GAACCTCTAGTCCACCAAGGT 58.742 52.381 0.00 0.00 42.08 3.50
2503 6623 1.939980 ACCTCTAGTCCACCAAGGTC 58.060 55.000 0.00 0.00 35.42 3.85
2504 6624 1.196012 CCTCTAGTCCACCAAGGTCC 58.804 60.000 0.00 0.00 39.02 4.46
2505 6625 1.552486 CCTCTAGTCCACCAAGGTCCA 60.552 57.143 0.00 0.00 39.02 4.02
2506 6626 2.257207 CTCTAGTCCACCAAGGTCCAA 58.743 52.381 0.00 0.00 39.02 3.53
2507 6627 2.234908 CTCTAGTCCACCAAGGTCCAAG 59.765 54.545 0.00 0.00 39.02 3.61
2508 6628 0.690762 TAGTCCACCAAGGTCCAAGC 59.309 55.000 0.00 0.00 39.02 4.01
2509 6629 1.150536 GTCCACCAAGGTCCAAGCA 59.849 57.895 0.00 0.00 39.02 3.91
2510 6630 1.150536 TCCACCAAGGTCCAAGCAC 59.849 57.895 0.00 0.00 39.02 4.40
2511 6631 1.151450 CCACCAAGGTCCAAGCACT 59.849 57.895 0.00 0.00 0.00 4.40
2512 6632 0.890996 CCACCAAGGTCCAAGCACTC 60.891 60.000 0.00 0.00 0.00 3.51
2513 6633 1.071471 ACCAAGGTCCAAGCACTCG 59.929 57.895 0.00 0.00 0.00 4.18
2514 6634 1.071471 CCAAGGTCCAAGCACTCGT 59.929 57.895 0.00 0.00 0.00 4.18
2515 6635 1.230635 CCAAGGTCCAAGCACTCGTG 61.231 60.000 0.00 0.00 0.00 4.35
2657 6778 4.289672 AGGAAATTTACTCAAGGAGCTGGA 59.710 41.667 0.00 0.00 32.04 3.86
2749 6871 7.896383 TTGGAATTTGCTAGGCTATTTACAT 57.104 32.000 0.00 0.00 0.00 2.29
3018 7141 2.604174 GCACCACGAACTTGACGGG 61.604 63.158 0.00 0.00 34.93 5.28
3033 7156 2.293051 TGACGGGGGAATTAGAGGGTAA 60.293 50.000 0.00 0.00 0.00 2.85
3079 7204 5.643379 TTTTCAACATTGGTATCAGAGCC 57.357 39.130 0.00 0.00 0.00 4.70
3080 7205 3.998913 TCAACATTGGTATCAGAGCCA 57.001 42.857 0.00 0.00 0.00 4.75
3081 7206 3.877559 TCAACATTGGTATCAGAGCCAG 58.122 45.455 0.00 0.00 36.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
953 4244 9.167311 CAGTTAGCTTGACTAAGATTAATTGGT 57.833 33.333 0.00 0.00 41.56 3.67
1358 4710 2.943978 CGGGCTGAGTTTCTCCGGT 61.944 63.158 0.00 0.00 37.35 5.28
1452 4804 1.135915 GATGTCTGCACAGGAGACGAT 59.864 52.381 12.83 8.21 42.46 3.73
1520 4881 1.582502 GACGGCATCTCGAAGTTTACG 59.417 52.381 0.00 0.00 0.00 3.18
1556 4917 0.602905 CGGAGGCGTTTGAGAAGGTT 60.603 55.000 0.00 0.00 0.00 3.50
1646 5010 4.070552 AGGTCCTCCGCGTTGAGC 62.071 66.667 4.92 8.10 43.95 4.26
1716 5080 0.953960 GTGTTGAGGCGGTCGGAAAT 60.954 55.000 0.00 0.00 0.00 2.17
1937 5301 1.442769 CGTTCTCCACCACCATTCTG 58.557 55.000 0.00 0.00 0.00 3.02
1985 5349 0.911769 TGACCATGGCCTTCTCGAAT 59.088 50.000 13.04 0.00 0.00 3.34
2003 5367 2.203056 TCGATGCCGGCCATCTTG 60.203 61.111 26.77 14.18 46.61 3.02
2069 5433 7.402862 ACTGCCCAACTTATTAGTAGTGATTT 58.597 34.615 0.00 0.00 33.17 2.17
2087 5451 2.113774 CAGTTGCTGGACTGCCCA 59.886 61.111 3.22 0.00 44.25 5.36
2095 5481 1.282248 CGTACGTCCACAGTTGCTGG 61.282 60.000 7.22 0.00 35.51 4.85
2121 5517 2.620115 GGTCGAGTGATCCGTTACCATA 59.380 50.000 0.00 0.00 0.00 2.74
2227 6338 4.706476 TGGCTAGAATTGAACCAAGGAATG 59.294 41.667 0.00 0.00 0.00 2.67
2268 6380 4.464008 AGACATGCACAACCCCATATAAG 58.536 43.478 0.00 0.00 0.00 1.73
2269 6381 4.518278 AGACATGCACAACCCCATATAA 57.482 40.909 0.00 0.00 0.00 0.98
2383 6500 6.611642 ACCAGCTGAGGTAATTCAGTATTAGA 59.388 38.462 17.39 0.00 45.07 2.10
2420 6540 5.915758 GTCATTGTTAATGCCAACGTTGTTA 59.084 36.000 25.63 15.20 38.77 2.41
2421 6541 4.742659 GTCATTGTTAATGCCAACGTTGTT 59.257 37.500 25.63 16.17 38.77 2.83
2426 6546 2.514902 CGGTCATTGTTAATGCCAACG 58.485 47.619 12.24 2.63 38.77 4.10
2431 6551 5.406649 TCATTTTCCGGTCATTGTTAATGC 58.593 37.500 0.00 0.00 38.77 3.56
2435 6555 5.048364 CCAGTTCATTTTCCGGTCATTGTTA 60.048 40.000 0.00 0.00 0.00 2.41
2439 6559 3.496331 ACCAGTTCATTTTCCGGTCATT 58.504 40.909 0.00 0.00 0.00 2.57
2452 6572 4.019681 CCTCCTAACCATACAACCAGTTCA 60.020 45.833 0.00 0.00 0.00 3.18
2462 6582 3.371965 TCCACTGTCCTCCTAACCATAC 58.628 50.000 0.00 0.00 0.00 2.39
2463 6583 3.769189 TCCACTGTCCTCCTAACCATA 57.231 47.619 0.00 0.00 0.00 2.74
2464 6584 2.572104 GTTCCACTGTCCTCCTAACCAT 59.428 50.000 0.00 0.00 0.00 3.55
2465 6585 1.975680 GTTCCACTGTCCTCCTAACCA 59.024 52.381 0.00 0.00 0.00 3.67
2466 6586 1.278413 GGTTCCACTGTCCTCCTAACC 59.722 57.143 0.00 0.00 0.00 2.85
2467 6587 2.234168 GAGGTTCCACTGTCCTCCTAAC 59.766 54.545 2.63 0.00 41.09 2.34
2468 6588 2.111972 AGAGGTTCCACTGTCCTCCTAA 59.888 50.000 9.05 0.00 46.15 2.69
2469 6589 1.717077 AGAGGTTCCACTGTCCTCCTA 59.283 52.381 9.05 0.00 46.15 2.94
2470 6590 0.489567 AGAGGTTCCACTGTCCTCCT 59.510 55.000 9.05 0.97 46.15 3.69
2471 6591 2.104170 CTAGAGGTTCCACTGTCCTCC 58.896 57.143 9.05 0.00 46.15 4.30
2472 6592 2.756207 GACTAGAGGTTCCACTGTCCTC 59.244 54.545 0.00 5.38 45.56 3.71
2473 6593 2.557901 GGACTAGAGGTTCCACTGTCCT 60.558 54.545 19.34 0.00 39.30 3.85
2474 6594 1.826096 GGACTAGAGGTTCCACTGTCC 59.174 57.143 15.43 15.43 36.23 4.02
2475 6595 2.231721 GTGGACTAGAGGTTCCACTGTC 59.768 54.545 18.51 5.19 46.53 3.51
2476 6596 2.249139 GTGGACTAGAGGTTCCACTGT 58.751 52.381 18.51 0.00 46.53 3.55
2480 6600 2.257207 CTTGGTGGACTAGAGGTTCCA 58.743 52.381 0.00 0.00 0.00 3.53
2481 6601 1.555533 CCTTGGTGGACTAGAGGTTCC 59.444 57.143 0.00 0.00 38.35 3.62
2482 6602 2.234168 GACCTTGGTGGACTAGAGGTTC 59.766 54.545 0.00 0.00 40.65 3.62
2483 6603 2.258109 GACCTTGGTGGACTAGAGGTT 58.742 52.381 0.00 0.00 40.65 3.50
2484 6604 1.552719 GGACCTTGGTGGACTAGAGGT 60.553 57.143 0.00 0.00 43.12 3.85
2485 6605 1.196012 GGACCTTGGTGGACTAGAGG 58.804 60.000 0.00 0.00 39.71 3.69
2486 6606 1.938585 TGGACCTTGGTGGACTAGAG 58.061 55.000 0.00 0.00 39.71 2.43
2487 6607 2.257207 CTTGGACCTTGGTGGACTAGA 58.743 52.381 0.00 0.00 39.71 2.43
2488 6608 1.339151 GCTTGGACCTTGGTGGACTAG 60.339 57.143 0.00 0.00 39.71 2.57
2489 6609 0.690762 GCTTGGACCTTGGTGGACTA 59.309 55.000 0.00 0.00 39.71 2.59
2490 6610 1.352622 TGCTTGGACCTTGGTGGACT 61.353 55.000 0.00 0.00 39.71 3.85
2491 6611 1.150536 TGCTTGGACCTTGGTGGAC 59.849 57.895 0.00 0.00 39.71 4.02
2492 6612 1.150536 GTGCTTGGACCTTGGTGGA 59.849 57.895 0.00 0.00 39.71 4.02
2493 6613 0.890996 GAGTGCTTGGACCTTGGTGG 60.891 60.000 0.00 0.00 42.93 4.61
2494 6614 1.230635 CGAGTGCTTGGACCTTGGTG 61.231 60.000 0.00 0.00 0.00 4.17
2495 6615 1.071471 CGAGTGCTTGGACCTTGGT 59.929 57.895 0.00 0.00 0.00 3.67
2496 6616 1.071471 ACGAGTGCTTGGACCTTGG 59.929 57.895 0.00 0.00 0.00 3.61
2497 6617 2.238353 CACGAGTGCTTGGACCTTG 58.762 57.895 0.00 0.00 0.00 3.61
2498 6618 4.779475 CACGAGTGCTTGGACCTT 57.221 55.556 0.00 0.00 0.00 3.50
2508 6628 4.749245 AAAATTCCTACAAGCACGAGTG 57.251 40.909 0.00 0.00 0.00 3.51
2509 6629 4.023193 CCAAAAATTCCTACAAGCACGAGT 60.023 41.667 0.00 0.00 0.00 4.18
2510 6630 4.023193 ACCAAAAATTCCTACAAGCACGAG 60.023 41.667 0.00 0.00 0.00 4.18
2511 6631 3.886505 ACCAAAAATTCCTACAAGCACGA 59.113 39.130 0.00 0.00 0.00 4.35
2512 6632 3.980775 CACCAAAAATTCCTACAAGCACG 59.019 43.478 0.00 0.00 0.00 5.34
2513 6633 4.944048 ACACCAAAAATTCCTACAAGCAC 58.056 39.130 0.00 0.00 0.00 4.40
2514 6634 4.892934 AGACACCAAAAATTCCTACAAGCA 59.107 37.500 0.00 0.00 0.00 3.91
2515 6635 5.453567 AGACACCAAAAATTCCTACAAGC 57.546 39.130 0.00 0.00 0.00 4.01
2516 6636 6.040391 TGGAAGACACCAAAAATTCCTACAAG 59.960 38.462 4.12 0.00 40.11 3.16
2749 6871 8.807118 AGACTTATCAATCTACAGAGTTGAACA 58.193 33.333 0.00 0.00 35.70 3.18
2790 6912 8.508883 TGCCACGTTTAAATAGTATATGGTTT 57.491 30.769 0.00 0.00 0.00 3.27
2832 6954 7.503902 GTCAAATTCCTTCTTATCCCTAAGCAT 59.496 37.037 0.00 0.00 35.32 3.79
3018 7141 7.832685 AGTATGTTTGTTTACCCTCTAATTCCC 59.167 37.037 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.