Multiple sequence alignment - TraesCS1B01G353500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G353500 chr1B 100.000 4469 0 0 938 5406 583693117 583688649 0.000000e+00 8253.0
1 TraesCS1B01G353500 chr1B 100.000 568 0 0 1 568 583694054 583693487 0.000000e+00 1050.0
2 TraesCS1B01G353500 chr1B 90.938 320 25 3 1 316 583735828 583735509 1.390000e-115 427.0
3 TraesCS1B01G353500 chr1D 94.817 1119 48 8 3232 4344 432207813 432206699 0.000000e+00 1736.0
4 TraesCS1B01G353500 chr1D 94.178 687 34 3 938 1624 432210143 432209463 0.000000e+00 1042.0
5 TraesCS1B01G353500 chr1D 81.854 1284 140 40 2649 3882 432231431 432230191 0.000000e+00 994.0
6 TraesCS1B01G353500 chr1D 86.176 897 71 25 1713 2577 432232309 432231434 0.000000e+00 920.0
7 TraesCS1B01G353500 chr1D 88.986 690 39 13 946 1624 432232977 432232314 0.000000e+00 819.0
8 TraesCS1B01G353500 chr1D 87.075 588 57 15 1713 2294 432209458 432208884 0.000000e+00 647.0
9 TraesCS1B01G353500 chr1D 85.413 569 50 14 14 554 432308560 432307997 1.310000e-155 560.0
10 TraesCS1B01G353500 chr1D 91.798 317 21 2 4345 4656 432229858 432229542 2.310000e-118 436.0
11 TraesCS1B01G353500 chr1D 94.139 273 16 0 69 341 432213843 432213571 3.010000e-112 416.0
12 TraesCS1B01G353500 chr1D 91.837 294 18 3 2286 2577 432208669 432208380 6.520000e-109 405.0
13 TraesCS1B01G353500 chr1D 81.369 526 41 26 4930 5406 432206058 432205541 5.110000e-100 375.0
14 TraesCS1B01G353500 chr1D 90.598 234 16 3 4559 4792 432206574 432206347 6.800000e-79 305.0
15 TraesCS1B01G353500 chr1D 92.593 108 8 0 1 108 432213946 432213839 7.250000e-34 156.0
16 TraesCS1B01G353500 chr1D 96.739 92 3 0 1620 1711 6790591 6790682 2.610000e-33 154.0
17 TraesCS1B01G353500 chr1D 97.727 88 2 0 4345 4432 432206667 432206580 9.380000e-33 152.0
18 TraesCS1B01G353500 chr1D 97.727 88 2 0 1621 1708 485506225 485506138 9.380000e-33 152.0
19 TraesCS1B01G353500 chr1D 95.385 65 3 0 4097 4161 432230060 432229996 2.660000e-18 104.0
20 TraesCS1B01G353500 chr1A 91.308 1116 72 9 3232 4337 530733954 530732854 0.000000e+00 1500.0
21 TraesCS1B01G353500 chr1A 88.040 1087 98 17 4345 5406 530732653 530731574 0.000000e+00 1258.0
22 TraesCS1B01G353500 chr1A 95.080 691 27 3 939 1624 530736311 530735623 0.000000e+00 1081.0
23 TraesCS1B01G353500 chr1A 91.096 584 25 9 1 568 530736897 530736325 0.000000e+00 765.0
24 TraesCS1B01G353500 chr1A 85.762 604 53 19 1713 2294 530735618 530735026 4.630000e-170 608.0
25 TraesCS1B01G353500 chr1A 85.413 569 50 13 14 554 530753879 530753316 1.310000e-155 560.0
26 TraesCS1B01G353500 chr1A 92.123 292 17 2 2286 2577 530734808 530734523 1.810000e-109 407.0
27 TraesCS1B01G353500 chr1A 98.077 52 1 0 2596 2647 11576162 11576111 2.070000e-14 91.6
28 TraesCS1B01G353500 chr2D 84.483 696 60 14 955 1624 571919784 571920457 1.270000e-180 643.0
29 TraesCS1B01G353500 chr2D 95.890 146 5 1 1707 1851 571920456 571920601 9.050000e-58 235.0
30 TraesCS1B01G353500 chr2D 98.113 53 1 0 2596 2648 164392541 164392593 5.770000e-15 93.5
31 TraesCS1B01G353500 chr2A 85.075 536 58 12 993 1521 710376574 710377094 1.330000e-145 527.0
32 TraesCS1B01G353500 chr2A 95.172 145 7 0 1707 1851 710382080 710382224 4.210000e-56 230.0
33 TraesCS1B01G353500 chr2A 84.328 134 15 6 313 445 710376213 710376341 5.680000e-25 126.0
34 TraesCS1B01G353500 chr2B 82.363 584 58 20 1061 1626 683767774 683768330 2.950000e-127 466.0
35 TraesCS1B01G353500 chr2B 96.552 145 5 0 1707 1851 683768332 683768476 1.950000e-59 241.0
36 TraesCS1B01G353500 chr2B 96.774 93 3 0 1620 1712 249224220 249224128 7.250000e-34 156.0
37 TraesCS1B01G353500 chr2B 94.000 100 3 3 1612 1708 489001573 489001672 1.210000e-31 148.0
38 TraesCS1B01G353500 chr2B 94.667 75 4 0 993 1067 683765698 683765772 3.420000e-22 117.0
39 TraesCS1B01G353500 chr7A 85.879 347 12 13 246 568 547122615 547122282 8.680000e-88 335.0
40 TraesCS1B01G353500 chr7A 88.433 268 25 1 1 262 547143063 547142796 8.740000e-83 318.0
41 TraesCS1B01G353500 chr7A 92.063 63 2 1 943 1002 547122281 547122219 9.650000e-13 86.1
42 TraesCS1B01G353500 chr6B 97.778 90 2 0 1620 1709 214031150 214031061 7.250000e-34 156.0
43 TraesCS1B01G353500 chrUn 95.833 96 3 1 1615 1709 31480460 31480555 2.610000e-33 154.0
44 TraesCS1B01G353500 chrUn 98.077 52 1 0 2596 2647 19227873 19227924 2.070000e-14 91.6
45 TraesCS1B01G353500 chr5D 95.789 95 2 1 1617 1709 51699298 51699392 9.380000e-33 152.0
46 TraesCS1B01G353500 chr5D 96.364 55 2 0 2596 2650 465001276 465001222 2.070000e-14 91.6
47 TraesCS1B01G353500 chr4D 95.745 94 4 0 1616 1709 481440610 481440703 9.380000e-33 152.0
48 TraesCS1B01G353500 chr4A 93.878 98 6 0 1611 1708 738728201 738728298 1.210000e-31 148.0
49 TraesCS1B01G353500 chr4A 98.148 54 1 0 2596 2649 467684259 467684312 1.600000e-15 95.3
50 TraesCS1B01G353500 chr4B 94.915 59 3 0 2596 2654 362839909 362839851 5.770000e-15 93.5
51 TraesCS1B01G353500 chr6D 98.077 52 1 0 2596 2647 302113699 302113750 2.070000e-14 91.6
52 TraesCS1B01G353500 chr7B 92.188 64 3 2 2601 2663 34326136 34326198 7.460000e-14 89.8
53 TraesCS1B01G353500 chr3B 96.078 51 2 0 2597 2647 41016744 41016694 3.470000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G353500 chr1B 583688649 583694054 5405 True 4651.500000 8253 100.000000 1 5406 2 chr1B.!!$R2 5405
1 TraesCS1B01G353500 chr1D 432229542 432232977 3435 True 654.600000 994 88.839800 946 4656 5 chr1D.!!$R4 3710
2 TraesCS1B01G353500 chr1D 432205541 432213946 8405 True 581.555556 1736 91.592556 1 5406 9 chr1D.!!$R3 5405
3 TraesCS1B01G353500 chr1D 432307997 432308560 563 True 560.000000 560 85.413000 14 554 1 chr1D.!!$R1 540
4 TraesCS1B01G353500 chr1A 530731574 530736897 5323 True 936.500000 1500 90.568167 1 5406 6 chr1A.!!$R3 5405
5 TraesCS1B01G353500 chr1A 530753316 530753879 563 True 560.000000 560 85.413000 14 554 1 chr1A.!!$R2 540
6 TraesCS1B01G353500 chr2D 571919784 571920601 817 False 439.000000 643 90.186500 955 1851 2 chr2D.!!$F2 896
7 TraesCS1B01G353500 chr2A 710376213 710377094 881 False 326.500000 527 84.701500 313 1521 2 chr2A.!!$F2 1208
8 TraesCS1B01G353500 chr2B 683765698 683768476 2778 False 274.666667 466 91.194000 993 1851 3 chr2B.!!$F2 858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 548 0.106149 AGGGATAATCGGGCACGTTC 59.894 55.000 8.89 1.26 41.85 3.95 F
1632 7041 1.207089 TGCTGAAACATACTCCCTCCG 59.793 52.381 0.00 0.00 0.00 4.63 F
1703 7112 0.032267 GAGTAAATCGGAGCGGAGGG 59.968 60.000 0.00 0.00 0.00 4.30 F
1705 7114 0.032267 GTAAATCGGAGCGGAGGGAG 59.968 60.000 0.00 0.00 0.00 4.30 F
1787 7196 0.318762 AGGCAGAAGTCGGAGTTGTC 59.681 55.000 2.13 0.00 0.00 3.18 F
3310 9066 0.036010 AATGGGAGCAGTTCGGACAG 60.036 55.000 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 7093 0.032267 CCCTCCGCTCCGATTTACTC 59.968 60.0 0.00 0.00 0.00 2.59 R
2717 8385 0.686789 TGTGACACTGACTCCCATGG 59.313 55.0 4.14 4.14 0.00 3.66 R
2745 8414 0.881118 GGTTTGCGAGCCTTTGATGA 59.119 50.0 0.00 0.00 0.00 2.92 R
3256 9011 1.680338 GGTTGCTGCAAGGGGTATAG 58.320 55.0 16.53 0.00 0.00 1.31 R
3751 9555 0.396060 CCTGAAGGATAGCTCTGGCC 59.604 60.0 0.00 0.00 36.83 5.36 R
5030 11216 0.108585 GTGGTTGAGAAGACAGGGCA 59.891 55.0 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
209 245 4.554036 GACCTCCATGCCGGCCTC 62.554 72.222 26.77 2.86 33.14 4.70
244 280 3.522731 CGTGAGAGAGGGCCTCCG 61.523 72.222 29.62 20.84 42.97 4.63
341 392 3.794690 CGTGTTCGTCCATGTCTCT 57.205 52.632 0.00 0.00 0.00 3.10
342 393 1.340658 CGTGTTCGTCCATGTCTCTG 58.659 55.000 0.00 0.00 0.00 3.35
343 394 1.714794 GTGTTCGTCCATGTCTCTGG 58.285 55.000 0.00 0.00 37.66 3.86
344 395 0.608130 TGTTCGTCCATGTCTCTGGG 59.392 55.000 0.00 0.00 36.89 4.45
385 444 3.290776 GCCGAGGAGCGTGAAATAT 57.709 52.632 0.00 0.00 38.67 1.28
386 445 2.433868 GCCGAGGAGCGTGAAATATA 57.566 50.000 0.00 0.00 38.67 0.86
457 548 0.106149 AGGGATAATCGGGCACGTTC 59.894 55.000 8.89 1.26 41.85 3.95
1057 4419 3.302347 AAGAGGAAGGTGAGCGCCG 62.302 63.158 2.29 0.00 0.00 6.46
1403 6784 2.348666 CCTTGTTATACTGACAGTGCGC 59.651 50.000 18.58 0.00 0.00 6.09
1469 6859 5.741011 TGTACAGTCCACAATTCCTTATCC 58.259 41.667 0.00 0.00 0.00 2.59
1509 6907 1.817447 GGTTACGACCTAGCACTCAGT 59.183 52.381 0.00 0.00 42.99 3.41
1564 6973 4.841422 TCGTAGGTGAGGATATACTAGCC 58.159 47.826 0.00 0.00 0.00 3.93
1626 7035 8.599055 TTATCTCATCATGCTGAAACATACTC 57.401 34.615 0.26 0.00 0.00 2.59
1627 7036 5.363101 TCTCATCATGCTGAAACATACTCC 58.637 41.667 0.26 0.00 0.00 3.85
1628 7037 4.454678 TCATCATGCTGAAACATACTCCC 58.545 43.478 0.00 0.00 0.00 4.30
1629 7038 4.164796 TCATCATGCTGAAACATACTCCCT 59.835 41.667 0.00 0.00 0.00 4.20
1630 7039 4.142609 TCATGCTGAAACATACTCCCTC 57.857 45.455 0.00 0.00 0.00 4.30
1631 7040 3.118261 TCATGCTGAAACATACTCCCTCC 60.118 47.826 0.00 0.00 0.00 4.30
1632 7041 1.207089 TGCTGAAACATACTCCCTCCG 59.793 52.381 0.00 0.00 0.00 4.63
1633 7042 1.207329 GCTGAAACATACTCCCTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
1634 7043 2.354805 GCTGAAACATACTCCCTCCGTT 60.355 50.000 0.00 0.00 0.00 4.44
1635 7044 3.522553 CTGAAACATACTCCCTCCGTTC 58.477 50.000 0.00 0.00 0.00 3.95
1636 7045 3.170717 TGAAACATACTCCCTCCGTTCT 58.829 45.455 0.00 0.00 0.00 3.01
1637 7046 3.056107 TGAAACATACTCCCTCCGTTCTG 60.056 47.826 0.00 0.00 0.00 3.02
1638 7047 2.526888 ACATACTCCCTCCGTTCTGA 57.473 50.000 0.00 0.00 0.00 3.27
1639 7048 3.033659 ACATACTCCCTCCGTTCTGAT 57.966 47.619 0.00 0.00 0.00 2.90
1640 7049 3.375699 ACATACTCCCTCCGTTCTGATT 58.624 45.455 0.00 0.00 0.00 2.57
1641 7050 3.775316 ACATACTCCCTCCGTTCTGATTT 59.225 43.478 0.00 0.00 0.00 2.17
1642 7051 4.960469 ACATACTCCCTCCGTTCTGATTTA 59.040 41.667 0.00 0.00 0.00 1.40
1643 7052 3.889520 ACTCCCTCCGTTCTGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
1644 7053 3.442076 ACTCCCTCCGTTCTGATTTACT 58.558 45.455 0.00 0.00 0.00 2.24
1645 7054 3.447944 ACTCCCTCCGTTCTGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
1646 7055 2.426024 TCCCTCCGTTCTGATTTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
1647 7056 2.165845 CCCTCCGTTCTGATTTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
1648 7057 3.436496 CCTCCGTTCTGATTTACTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
1649 7058 3.099362 CTCCGTTCTGATTTACTCGTCG 58.901 50.000 0.00 0.00 0.00 5.12
1650 7059 2.485426 TCCGTTCTGATTTACTCGTCGT 59.515 45.455 0.00 0.00 0.00 4.34
1651 7060 2.592897 CCGTTCTGATTTACTCGTCGTG 59.407 50.000 0.00 0.00 0.00 4.35
1652 7061 2.592897 CGTTCTGATTTACTCGTCGTGG 59.407 50.000 0.00 0.00 0.00 4.94
1653 7062 3.572584 GTTCTGATTTACTCGTCGTGGT 58.427 45.455 0.00 0.00 0.00 4.16
1654 7063 3.928727 TCTGATTTACTCGTCGTGGTT 57.071 42.857 0.00 0.00 0.00 3.67
1655 7064 4.247267 TCTGATTTACTCGTCGTGGTTT 57.753 40.909 0.00 0.00 0.00 3.27
1656 7065 4.624015 TCTGATTTACTCGTCGTGGTTTT 58.376 39.130 0.00 0.00 0.00 2.43
1657 7066 5.771469 TCTGATTTACTCGTCGTGGTTTTA 58.229 37.500 0.00 0.00 0.00 1.52
1658 7067 5.860182 TCTGATTTACTCGTCGTGGTTTTAG 59.140 40.000 0.00 0.00 0.00 1.85
1659 7068 5.531634 TGATTTACTCGTCGTGGTTTTAGT 58.468 37.500 0.00 0.00 0.00 2.24
1660 7069 5.984926 TGATTTACTCGTCGTGGTTTTAGTT 59.015 36.000 0.00 0.00 0.00 2.24
1661 7070 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
1662 7071 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1663 7072 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
1664 7073 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
1665 7074 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
1666 7075 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
1667 7076 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
1668 7077 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
1669 7078 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
1670 7079 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
1683 7092 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
1684 7093 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
1685 7094 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
1686 7095 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
1687 7096 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1688 7097 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1689 7098 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1690 7099 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
1691 7100 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
1692 7101 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
1702 7111 3.571741 GAGTAAATCGGAGCGGAGG 57.428 57.895 0.00 0.00 0.00 4.30
1703 7112 0.032267 GAGTAAATCGGAGCGGAGGG 59.968 60.000 0.00 0.00 0.00 4.30
1704 7113 0.396695 AGTAAATCGGAGCGGAGGGA 60.397 55.000 0.00 0.00 0.00 4.20
1705 7114 0.032267 GTAAATCGGAGCGGAGGGAG 59.968 60.000 0.00 0.00 0.00 4.30
1724 7133 1.478510 AGTAGTTCTCACGCTCCATGG 59.521 52.381 4.97 4.97 0.00 3.66
1787 7196 0.318762 AGGCAGAAGTCGGAGTTGTC 59.681 55.000 2.13 0.00 0.00 3.18
1819 7235 1.466855 GCACCTCGCGCATTTAAATC 58.533 50.000 8.75 0.00 0.00 2.17
1870 7287 6.120220 AGTACAGGATATAGGTTTTGCCAAC 58.880 40.000 0.00 0.00 40.61 3.77
1872 7289 5.518865 ACAGGATATAGGTTTTGCCAACAT 58.481 37.500 0.00 0.00 40.61 2.71
1874 7291 7.122715 ACAGGATATAGGTTTTGCCAACATTA 58.877 34.615 0.00 0.00 40.61 1.90
1886 7303 4.454678 TGCCAACATTATCAGATGGTCTC 58.545 43.478 0.00 0.00 32.10 3.36
1887 7304 3.496130 GCCAACATTATCAGATGGTCTCG 59.504 47.826 0.00 0.00 32.10 4.04
1904 7321 1.339610 CTCGCATGTAAGGAGGAGGAG 59.660 57.143 0.00 0.00 0.00 3.69
1907 7324 1.691434 GCATGTAAGGAGGAGGAGGAG 59.309 57.143 0.00 0.00 0.00 3.69
1908 7325 2.324541 CATGTAAGGAGGAGGAGGAGG 58.675 57.143 0.00 0.00 0.00 4.30
1909 7326 1.695065 TGTAAGGAGGAGGAGGAGGA 58.305 55.000 0.00 0.00 0.00 3.71
1916 7354 1.383803 GGAGGAGGAGGATGTGGCT 60.384 63.158 0.00 0.00 0.00 4.75
1960 7398 7.061054 AGTGTAGTATACTGATCACTTAGGCA 58.939 38.462 22.58 0.00 43.54 4.75
1990 7428 9.538508 TTTACTAGTACTCTTGGTTTTCTGTTC 57.461 33.333 0.91 0.00 0.00 3.18
2001 7439 3.476181 GTTTTCTGTTCGAATACCACGC 58.524 45.455 0.00 0.00 30.28 5.34
2019 7457 6.977213 ACCACGCTTTTATATTTGAACTTGT 58.023 32.000 0.00 0.00 0.00 3.16
2031 7469 5.728351 TTTGAACTTGTACTGAGTTTCGG 57.272 39.130 13.84 0.00 37.46 4.30
2085 7523 1.777272 GATCTTAAGATGGGGGCTGGT 59.223 52.381 22.61 0.00 34.37 4.00
2125 7563 2.617021 GCCCGTAAGTTCCATTTCCTGA 60.617 50.000 0.00 0.00 0.00 3.86
2173 7611 5.147330 TGGTACATCTCGTTCTGTTTGAT 57.853 39.130 0.00 0.00 0.00 2.57
2185 7623 5.183140 CGTTCTGTTTGATTTATCCCAACCT 59.817 40.000 0.00 0.00 0.00 3.50
2193 7631 6.884472 TGATTTATCCCAACCTGAAGACTA 57.116 37.500 0.00 0.00 0.00 2.59
2195 7633 7.509546 TGATTTATCCCAACCTGAAGACTATC 58.490 38.462 0.00 0.00 0.00 2.08
2222 7660 6.449698 ACTTTGCTCAAATACAACTGATTGG 58.550 36.000 0.00 0.00 40.42 3.16
2224 7662 5.375417 TGCTCAAATACAACTGATTGGTG 57.625 39.130 0.00 0.00 40.42 4.17
2225 7663 5.069318 TGCTCAAATACAACTGATTGGTGA 58.931 37.500 0.00 0.00 40.42 4.02
2227 7665 6.209192 TGCTCAAATACAACTGATTGGTGATT 59.791 34.615 0.00 0.00 40.42 2.57
2228 7666 6.529125 GCTCAAATACAACTGATTGGTGATTG 59.471 38.462 0.00 0.00 40.42 2.67
2229 7667 6.389091 TCAAATACAACTGATTGGTGATTGC 58.611 36.000 0.00 0.00 40.42 3.56
2230 7668 6.209192 TCAAATACAACTGATTGGTGATTGCT 59.791 34.615 0.00 0.00 40.42 3.91
2232 7670 4.247267 ACAACTGATTGGTGATTGCTTG 57.753 40.909 0.00 0.00 40.42 4.01
2234 7672 2.241160 ACTGATTGGTGATTGCTTGCA 58.759 42.857 0.00 0.00 0.00 4.08
2235 7673 2.029649 ACTGATTGGTGATTGCTTGCAC 60.030 45.455 0.00 0.00 0.00 4.57
2236 7674 1.962100 TGATTGGTGATTGCTTGCACA 59.038 42.857 0.00 0.00 36.76 4.57
2237 7675 2.364647 TGATTGGTGATTGCTTGCACAA 59.635 40.909 0.00 0.00 36.76 3.33
2238 7676 3.007074 TGATTGGTGATTGCTTGCACAAT 59.993 39.130 2.39 2.39 42.88 2.71
2239 7677 3.472283 TTGGTGATTGCTTGCACAATT 57.528 38.095 4.24 0.00 40.31 2.32
2240 7678 3.029320 TGGTGATTGCTTGCACAATTC 57.971 42.857 4.24 2.21 40.31 2.17
2241 7679 1.987770 GGTGATTGCTTGCACAATTCG 59.012 47.619 4.24 0.00 40.31 3.34
2242 7680 1.987770 GTGATTGCTTGCACAATTCGG 59.012 47.619 4.24 0.00 40.31 4.30
2243 7681 1.612950 TGATTGCTTGCACAATTCGGT 59.387 42.857 4.24 0.00 40.31 4.69
2244 7682 2.816672 TGATTGCTTGCACAATTCGGTA 59.183 40.909 4.24 0.00 40.31 4.02
2283 7721 4.998033 GCCAGAACAACTCTAGTTTAAGCT 59.002 41.667 0.00 0.00 35.83 3.74
2296 7960 8.577048 TCTAGTTTAAGCTGTCTGTGTACTAT 57.423 34.615 1.54 0.00 0.00 2.12
2300 7964 8.244802 AGTTTAAGCTGTCTGTGTACTATAGTG 58.755 37.037 15.90 0.00 0.00 2.74
2304 7968 7.411486 AGCTGTCTGTGTACTATAGTGAATT 57.589 36.000 15.90 0.00 0.00 2.17
2381 8047 5.011090 TCTGTAGCCAATGTACATCTGTC 57.989 43.478 9.23 0.26 30.07 3.51
2437 8103 0.680921 ATGCGGCAACTGGCTTGTAT 60.681 50.000 6.82 0.00 44.01 2.29
2492 8158 3.251972 GCCATCTTGCTTCATTAGGTAGC 59.748 47.826 0.00 0.00 35.50 3.58
2497 8163 6.398234 TCTTGCTTCATTAGGTAGCTCTAG 57.602 41.667 0.00 0.00 35.93 2.43
2579 8247 9.461312 TGGTTTGACATTATTAGAAATGCTACT 57.539 29.630 0.00 0.00 39.93 2.57
2580 8248 9.937175 GGTTTGACATTATTAGAAATGCTACTC 57.063 33.333 0.00 0.00 39.93 2.59
2581 8249 9.937175 GTTTGACATTATTAGAAATGCTACTCC 57.063 33.333 0.00 0.00 39.93 3.85
2582 8250 9.905713 TTTGACATTATTAGAAATGCTACTCCT 57.094 29.630 0.00 0.00 39.93 3.69
2583 8251 9.905713 TTGACATTATTAGAAATGCTACTCCTT 57.094 29.630 0.00 0.00 39.93 3.36
2584 8252 9.547753 TGACATTATTAGAAATGCTACTCCTTC 57.452 33.333 0.00 0.00 39.93 3.46
2585 8253 8.910351 ACATTATTAGAAATGCTACTCCTTCC 57.090 34.615 0.00 0.00 39.93 3.46
2586 8254 7.657761 ACATTATTAGAAATGCTACTCCTTCCG 59.342 37.037 0.00 0.00 39.93 4.30
2587 8255 5.871396 ATTAGAAATGCTACTCCTTCCGA 57.129 39.130 0.00 0.00 0.00 4.55
2588 8256 5.871396 TTAGAAATGCTACTCCTTCCGAT 57.129 39.130 0.00 0.00 0.00 4.18
2589 8257 4.329462 AGAAATGCTACTCCTTCCGATC 57.671 45.455 0.00 0.00 0.00 3.69
2590 8258 3.070302 AGAAATGCTACTCCTTCCGATCC 59.930 47.826 0.00 0.00 0.00 3.36
2591 8259 2.088104 ATGCTACTCCTTCCGATCCA 57.912 50.000 0.00 0.00 0.00 3.41
2592 8260 2.088104 TGCTACTCCTTCCGATCCAT 57.912 50.000 0.00 0.00 0.00 3.41
2593 8261 3.238788 TGCTACTCCTTCCGATCCATA 57.761 47.619 0.00 0.00 0.00 2.74
2594 8262 2.891580 TGCTACTCCTTCCGATCCATAC 59.108 50.000 0.00 0.00 0.00 2.39
2595 8263 3.158676 GCTACTCCTTCCGATCCATACT 58.841 50.000 0.00 0.00 0.00 2.12
2596 8264 4.202535 TGCTACTCCTTCCGATCCATACTA 60.203 45.833 0.00 0.00 0.00 1.82
2597 8265 4.156373 GCTACTCCTTCCGATCCATACTAC 59.844 50.000 0.00 0.00 0.00 2.73
2598 8266 3.147629 ACTCCTTCCGATCCATACTACG 58.852 50.000 0.00 0.00 0.00 3.51
2599 8267 3.147629 CTCCTTCCGATCCATACTACGT 58.852 50.000 0.00 0.00 0.00 3.57
2600 8268 3.144506 TCCTTCCGATCCATACTACGTC 58.855 50.000 0.00 0.00 0.00 4.34
2601 8269 3.147629 CCTTCCGATCCATACTACGTCT 58.852 50.000 0.00 0.00 0.00 4.18
2602 8270 4.040829 TCCTTCCGATCCATACTACGTCTA 59.959 45.833 0.00 0.00 0.00 2.59
2603 8271 4.392445 CCTTCCGATCCATACTACGTCTAG 59.608 50.000 0.00 0.00 0.00 2.43
2604 8272 4.879197 TCCGATCCATACTACGTCTAGA 57.121 45.455 0.00 0.00 0.00 2.43
2605 8273 5.417754 TCCGATCCATACTACGTCTAGAT 57.582 43.478 0.00 0.00 0.00 1.98
2606 8274 6.535963 TCCGATCCATACTACGTCTAGATA 57.464 41.667 0.00 0.00 0.00 1.98
2607 8275 6.336566 TCCGATCCATACTACGTCTAGATAC 58.663 44.000 0.00 0.00 0.00 2.24
2608 8276 6.071165 TCCGATCCATACTACGTCTAGATACA 60.071 42.308 0.00 0.00 0.00 2.29
2609 8277 6.762187 CCGATCCATACTACGTCTAGATACAT 59.238 42.308 0.00 0.00 0.00 2.29
2610 8278 7.042590 CCGATCCATACTACGTCTAGATACATC 60.043 44.444 0.00 0.00 0.00 3.06
2611 8279 7.707464 CGATCCATACTACGTCTAGATACATCT 59.293 40.741 0.00 0.00 40.86 2.90
2612 8280 8.725405 ATCCATACTACGTCTAGATACATCTG 57.275 38.462 0.00 0.00 37.76 2.90
2613 8281 7.677892 TCCATACTACGTCTAGATACATCTGT 58.322 38.462 0.00 0.00 37.76 3.41
2614 8282 8.155510 TCCATACTACGTCTAGATACATCTGTT 58.844 37.037 0.00 0.00 37.76 3.16
2615 8283 8.784994 CCATACTACGTCTAGATACATCTGTTT 58.215 37.037 0.00 0.00 37.76 2.83
2616 8284 9.600646 CATACTACGTCTAGATACATCTGTTTG 57.399 37.037 0.00 0.00 37.76 2.93
2617 8285 7.860918 ACTACGTCTAGATACATCTGTTTGA 57.139 36.000 0.00 0.00 37.76 2.69
2618 8286 7.921787 ACTACGTCTAGATACATCTGTTTGAG 58.078 38.462 0.00 0.00 37.76 3.02
2619 8287 5.583495 ACGTCTAGATACATCTGTTTGAGC 58.417 41.667 0.00 0.00 37.76 4.26
2620 8288 4.672862 CGTCTAGATACATCTGTTTGAGCG 59.327 45.833 0.00 0.00 37.76 5.03
2621 8289 5.504173 CGTCTAGATACATCTGTTTGAGCGA 60.504 44.000 0.00 0.00 37.76 4.93
2622 8290 5.683743 GTCTAGATACATCTGTTTGAGCGAC 59.316 44.000 0.00 0.00 37.76 5.19
2623 8291 4.456280 AGATACATCTGTTTGAGCGACA 57.544 40.909 0.00 0.00 35.42 4.35
2624 8292 4.820897 AGATACATCTGTTTGAGCGACAA 58.179 39.130 0.00 0.00 35.42 3.18
2625 8293 4.867047 AGATACATCTGTTTGAGCGACAAG 59.133 41.667 0.00 0.00 36.42 3.16
2626 8294 2.838736 ACATCTGTTTGAGCGACAAGT 58.161 42.857 0.00 0.00 39.77 3.16
2627 8295 3.990092 ACATCTGTTTGAGCGACAAGTA 58.010 40.909 0.00 0.00 39.77 2.24
2628 8296 4.377021 ACATCTGTTTGAGCGACAAGTAA 58.623 39.130 0.00 0.00 39.77 2.24
2629 8297 4.997395 ACATCTGTTTGAGCGACAAGTAAT 59.003 37.500 0.00 0.00 39.77 1.89
2630 8298 6.163476 ACATCTGTTTGAGCGACAAGTAATA 58.837 36.000 0.00 0.00 39.77 0.98
2631 8299 6.818644 ACATCTGTTTGAGCGACAAGTAATAT 59.181 34.615 0.00 0.00 39.77 1.28
2632 8300 6.647212 TCTGTTTGAGCGACAAGTAATATG 57.353 37.500 0.00 0.00 39.77 1.78
2633 8301 5.580691 TCTGTTTGAGCGACAAGTAATATGG 59.419 40.000 0.00 0.00 39.77 2.74
2634 8302 5.483811 TGTTTGAGCGACAAGTAATATGGA 58.516 37.500 0.00 0.00 39.77 3.41
2635 8303 6.112734 TGTTTGAGCGACAAGTAATATGGAT 58.887 36.000 0.00 0.00 39.77 3.41
2636 8304 6.257849 TGTTTGAGCGACAAGTAATATGGATC 59.742 38.462 0.00 0.00 39.77 3.36
2637 8305 4.546570 TGAGCGACAAGTAATATGGATCG 58.453 43.478 0.00 0.00 0.00 3.69
2638 8306 3.914312 AGCGACAAGTAATATGGATCGG 58.086 45.455 0.00 0.00 0.00 4.18
2639 8307 3.572682 AGCGACAAGTAATATGGATCGGA 59.427 43.478 0.00 0.00 0.00 4.55
2640 8308 3.921021 GCGACAAGTAATATGGATCGGAG 59.079 47.826 0.00 0.00 0.00 4.63
2641 8309 4.486090 CGACAAGTAATATGGATCGGAGG 58.514 47.826 0.00 0.00 0.00 4.30
2642 8310 4.618460 CGACAAGTAATATGGATCGGAGGG 60.618 50.000 0.00 0.00 0.00 4.30
2643 8311 4.489737 ACAAGTAATATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
2644 8312 4.528596 ACAAGTAATATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
2645 8313 4.405756 AGTAATATGGATCGGAGGGAGT 57.594 45.455 0.00 0.00 0.00 3.85
2646 8314 5.531753 AGTAATATGGATCGGAGGGAGTA 57.468 43.478 0.00 0.00 0.00 2.59
2647 8315 5.900437 AGTAATATGGATCGGAGGGAGTAA 58.100 41.667 0.00 0.00 0.00 2.24
2654 8322 5.014858 TGGATCGGAGGGAGTAATACATAC 58.985 45.833 0.00 0.00 34.52 2.39
2657 8325 5.057843 TCGGAGGGAGTAATACATACTGT 57.942 43.478 0.00 0.00 45.00 3.55
2666 8334 9.694137 GGGAGTAATACATACTGTATGAAGTTC 57.306 37.037 29.17 18.11 45.00 3.01
2699 8367 5.488341 ACACAGTTTTAGTACTATGCCAGG 58.512 41.667 2.79 0.00 0.00 4.45
2717 8385 4.083271 GCCAGGTTGTTGACTGTATTTCTC 60.083 45.833 0.00 0.00 32.90 2.87
2720 8388 5.707298 CAGGTTGTTGACTGTATTTCTCCAT 59.293 40.000 0.00 0.00 0.00 3.41
2744 8413 5.063880 GGGAGTCAGTGTCACACTTATTTT 58.936 41.667 8.05 0.00 42.59 1.82
2745 8414 5.531287 GGGAGTCAGTGTCACACTTATTTTT 59.469 40.000 8.05 0.00 42.59 1.94
2759 8428 5.287035 CACTTATTTTTCATCAAAGGCTCGC 59.713 40.000 0.00 0.00 0.00 5.03
2770 8439 1.228657 AAGGCTCGCAAACCGAAGTC 61.229 55.000 0.00 0.00 46.81 3.01
2772 8441 0.389426 GGCTCGCAAACCGAAGTCTA 60.389 55.000 0.00 0.00 46.81 2.59
2773 8442 0.992802 GCTCGCAAACCGAAGTCTAG 59.007 55.000 0.00 0.00 46.81 2.43
2779 8448 3.259064 GCAAACCGAAGTCTAGTGCATA 58.741 45.455 0.00 0.00 0.00 3.14
2785 8454 3.119101 CCGAAGTCTAGTGCATAAGTGGT 60.119 47.826 0.00 0.00 0.00 4.16
2798 8467 9.326413 AGTGCATAAGTGGTTATTATACTCAAC 57.674 33.333 0.00 0.00 0.00 3.18
2823 8492 9.596308 ACTTGGAGTTATAAACTTAAAATGGGT 57.404 29.630 0.00 0.00 43.03 4.51
2826 8495 9.165035 TGGAGTTATAAACTTAAAATGGGTACG 57.835 33.333 0.00 0.00 43.03 3.67
2827 8496 8.615211 GGAGTTATAAACTTAAAATGGGTACGG 58.385 37.037 0.00 0.00 43.03 4.02
2837 8506 7.770433 ACTTAAAATGGGTACGGTAAGTATTCC 59.230 37.037 0.00 0.00 37.69 3.01
2843 8512 5.367352 TGGGTACGGTAAGTATTCCATCATT 59.633 40.000 0.00 0.00 36.93 2.57
2844 8513 5.699458 GGGTACGGTAAGTATTCCATCATTG 59.301 44.000 0.00 0.00 37.69 2.82
2845 8514 6.463331 GGGTACGGTAAGTATTCCATCATTGA 60.463 42.308 0.00 0.00 37.69 2.57
2846 8515 7.159372 GGTACGGTAAGTATTCCATCATTGAT 58.841 38.462 0.00 0.00 37.69 2.57
2859 8531 4.202430 CCATCATTGATCAGATGAGTCCCA 60.202 45.833 20.88 3.18 43.28 4.37
2878 8550 6.830838 AGTCCCAAGAGCATAATCTTTAAAGG 59.169 38.462 15.13 0.00 37.43 3.11
2929 8601 5.590530 TTCAGTGAAAGCAAGCCTTTAAA 57.409 34.783 2.20 0.00 43.64 1.52
3001 8674 4.508662 GATGTCTAAGTGGACTGGAAAGG 58.491 47.826 0.00 0.00 37.16 3.11
3044 8717 3.018423 AGGCTGGCCTTTAATTAGTGG 57.982 47.619 8.50 2.52 45.70 4.00
3172 8927 4.718961 AGCAAGATTAAGGTGTCAGTGTT 58.281 39.130 0.00 0.00 0.00 3.32
3183 8938 3.006537 GGTGTCAGTGTTAAGGAGCTGTA 59.993 47.826 0.00 0.00 0.00 2.74
3191 8946 4.030913 TGTTAAGGAGCTGTATGCCTACT 58.969 43.478 0.00 0.00 44.23 2.57
3204 8959 1.271108 TGCCTACTTTGCATGGTTCGA 60.271 47.619 0.00 0.00 32.85 3.71
3216 8971 3.379240 CATGGTTCGATGTTTTGCACAA 58.621 40.909 0.00 0.00 39.50 3.33
3218 8973 4.052159 TGGTTCGATGTTTTGCACAATT 57.948 36.364 0.00 0.00 39.50 2.32
3219 8974 3.801050 TGGTTCGATGTTTTGCACAATTG 59.199 39.130 3.24 3.24 39.50 2.32
3221 8976 4.148696 GGTTCGATGTTTTGCACAATTGAG 59.851 41.667 13.59 5.31 39.50 3.02
3226 8981 5.897518 CGATGTTTTGCACAATTGAGTTTTG 59.102 36.000 13.59 0.04 39.50 2.44
3278 9034 4.659172 CCCCTTGCAGCAACCGGA 62.659 66.667 9.46 0.00 0.00 5.14
3310 9066 0.036010 AATGGGAGCAGTTCGGACAG 60.036 55.000 0.00 0.00 0.00 3.51
3387 9146 5.502079 TCCAGGGCGTATATTTCTTTGAAA 58.498 37.500 0.00 0.00 0.00 2.69
3469 9228 5.416952 CAGGATAAAGGAAACTGCAGAACAT 59.583 40.000 23.35 5.81 42.68 2.71
3604 9381 7.611855 AGTTGCTTATCTACTGCCTGTAAAAAT 59.388 33.333 0.00 0.00 29.71 1.82
3692 9496 9.902684 AATGTCTGAATCTCAATAACTCTTGAT 57.097 29.630 0.00 0.00 34.76 2.57
3787 9591 5.593909 CCTTCAGGGTGTTAATATTGATGCA 59.406 40.000 0.00 0.00 0.00 3.96
4067 9876 8.843885 TGATTCTAATCTCATTTAGCCTGATG 57.156 34.615 4.45 0.00 36.39 3.07
4070 9879 9.857656 ATTCTAATCTCATTTAGCCTGATGAAA 57.142 29.630 0.00 0.00 32.33 2.69
4088 9897 6.432783 TGATGAAATGACCGTTACCAATTCTT 59.567 34.615 0.00 0.00 0.00 2.52
4189 9998 7.042335 TGCTGTTTTATTCTCTTAGCTACTCC 58.958 38.462 0.00 0.00 0.00 3.85
4236 10048 4.997395 TCTCACCTTGTGCTAATTCTGTTC 59.003 41.667 0.00 0.00 32.98 3.18
4244 10056 4.756642 TGTGCTAATTCTGTTCCAAGAGTG 59.243 41.667 0.00 0.00 0.00 3.51
4323 10135 5.369404 TCAAACTGATATCCCATGAAGCCTA 59.631 40.000 0.00 0.00 0.00 3.93
4337 10149 7.227512 CCCATGAAGCCTAGTAATACTTTTCTG 59.772 40.741 0.00 0.86 0.00 3.02
4338 10150 7.770897 CCATGAAGCCTAGTAATACTTTTCTGT 59.229 37.037 0.00 0.00 0.00 3.41
4340 10152 9.740710 ATGAAGCCTAGTAATACTTTTCTGTTT 57.259 29.630 0.00 0.00 0.00 2.83
4341 10153 8.999431 TGAAGCCTAGTAATACTTTTCTGTTTG 58.001 33.333 0.00 0.00 0.00 2.93
4342 10154 7.923414 AGCCTAGTAATACTTTTCTGTTTGG 57.077 36.000 0.00 0.00 0.00 3.28
4343 10155 6.374613 AGCCTAGTAATACTTTTCTGTTTGGC 59.625 38.462 0.00 0.00 0.00 4.52
4455 10460 3.077359 CCTCAGTTGTTCCTGATGTTCC 58.923 50.000 0.00 0.00 40.53 3.62
4475 10480 4.641868 TCCTCCCCTTCCAAACATATAGT 58.358 43.478 0.00 0.00 0.00 2.12
4476 10481 5.043762 TCCTCCCCTTCCAAACATATAGTT 58.956 41.667 0.00 0.00 43.89 2.24
4481 10486 5.828328 CCCCTTCCAAACATATAGTTCCTTC 59.172 44.000 0.00 0.00 40.26 3.46
4541 10551 4.351874 TCACCAAGTTTTAGAGTCCCTG 57.648 45.455 0.00 0.00 0.00 4.45
4619 10630 6.915843 GCTTCTGATAACTAGTCTGCTAACTC 59.084 42.308 0.00 0.00 0.00 3.01
4622 10635 7.339482 TCTGATAACTAGTCTGCTAACTCTGA 58.661 38.462 0.00 0.00 0.00 3.27
4626 10639 9.810545 GATAACTAGTCTGCTAACTCTGATTTT 57.189 33.333 0.00 0.00 0.00 1.82
4675 10688 2.571653 CAGTGTAGTCCCATCCTGGAAA 59.428 50.000 0.00 0.00 40.96 3.13
4676 10689 3.009033 CAGTGTAGTCCCATCCTGGAAAA 59.991 47.826 0.00 0.00 40.96 2.29
4692 10705 5.534654 CCTGGAAAAGACTATGTTTGTTGGA 59.465 40.000 0.00 0.00 0.00 3.53
4723 10736 2.203126 CCAGGATCCCTTCGCTGC 60.203 66.667 8.55 0.00 0.00 5.25
4728 10741 4.473520 ATCCCTTCGCTGCACCCG 62.474 66.667 0.00 0.00 0.00 5.28
4741 10754 1.315257 GCACCCGTTCCTCATGCATT 61.315 55.000 0.00 0.00 36.30 3.56
4745 10758 0.379669 CCGTTCCTCATGCATTGCTC 59.620 55.000 10.49 0.00 0.00 4.26
4792 10805 7.522374 CAGACTCTAGTGCTTGGTTTAAAATC 58.478 38.462 0.00 0.00 0.00 2.17
4813 10826 1.812507 ACCGCCCGCGATTACTTTC 60.813 57.895 8.23 0.00 42.83 2.62
4815 10828 1.087771 CCGCCCGCGATTACTTTCTT 61.088 55.000 8.23 0.00 42.83 2.52
4816 10829 0.725117 CGCCCGCGATTACTTTCTTT 59.275 50.000 8.23 0.00 42.83 2.52
4817 10830 1.129811 CGCCCGCGATTACTTTCTTTT 59.870 47.619 8.23 0.00 42.83 2.27
4845 10860 5.632764 CCTACTTGATGATGACGATGATGAC 59.367 44.000 0.00 0.00 0.00 3.06
4866 10881 2.224079 CGATAGTGCAACACAGCTTTGT 59.776 45.455 0.00 0.00 41.43 2.83
4871 10886 3.679502 AGTGCAACACAGCTTTGTTTTTC 59.320 39.130 15.48 8.58 41.43 2.29
4894 10913 1.161563 TTTGTCCTTTCCGCGACACC 61.162 55.000 8.23 0.00 38.68 4.16
4896 10915 3.296836 TCCTTTCCGCGACACCGA 61.297 61.111 8.23 0.00 38.22 4.69
4904 10923 2.248431 GCGACACCGAACAAGCAC 59.752 61.111 0.00 0.00 38.22 4.40
4989 11175 1.841663 CGTGTGCCCAAGAGGAAACG 61.842 60.000 0.00 0.00 38.24 3.60
4992 11178 1.301401 TGCCCAAGAGGAAACGTCG 60.301 57.895 0.00 0.00 38.24 5.12
4993 11179 2.033194 GCCCAAGAGGAAACGTCGG 61.033 63.158 0.00 0.00 38.24 4.79
5006 11192 3.513680 AACGTCGGACATGTGCTTATA 57.486 42.857 15.82 0.00 0.00 0.98
5014 11200 4.381411 GGACATGTGCTTATACTCTTCCC 58.619 47.826 10.51 0.00 0.00 3.97
5015 11201 4.141711 GGACATGTGCTTATACTCTTCCCA 60.142 45.833 10.51 0.00 0.00 4.37
5016 11202 5.455326 GGACATGTGCTTATACTCTTCCCAT 60.455 44.000 10.51 0.00 0.00 4.00
5018 11204 4.422073 TGTGCTTATACTCTTCCCATGG 57.578 45.455 4.14 4.14 0.00 3.66
5019 11205 3.780294 TGTGCTTATACTCTTCCCATGGT 59.220 43.478 11.73 0.00 0.00 3.55
5021 11207 5.163343 TGTGCTTATACTCTTCCCATGGTAC 60.163 44.000 11.73 0.00 0.00 3.34
5022 11208 5.070580 GTGCTTATACTCTTCCCATGGTACT 59.929 44.000 11.73 0.00 0.00 2.73
5023 11209 6.267014 GTGCTTATACTCTTCCCATGGTACTA 59.733 42.308 11.73 0.00 0.00 1.82
5024 11210 6.267014 TGCTTATACTCTTCCCATGGTACTAC 59.733 42.308 11.73 0.00 0.00 2.73
5025 11211 6.494146 GCTTATACTCTTCCCATGGTACTACT 59.506 42.308 11.73 0.00 0.00 2.57
5030 11216 4.172807 TCTTCCCATGGTACTACTTGGTT 58.827 43.478 11.73 0.00 34.73 3.67
5046 11232 1.239347 GGTTGCCCTGTCTTCTCAAC 58.761 55.000 0.00 0.00 37.04 3.18
5101 11306 2.923020 CTGGACTGTTTTGTGTTGCAAC 59.077 45.455 22.83 22.83 36.72 4.17
5119 11324 3.645884 CAACCTCTGCTCCAAATTTGTG 58.354 45.455 16.73 10.13 0.00 3.33
5125 11330 5.437289 TCTGCTCCAAATTTGTGTGTAAG 57.563 39.130 16.73 6.90 0.00 2.34
5136 11341 7.935338 AATTTGTGTGTAAGCTTTGATCTTG 57.065 32.000 3.20 0.00 0.00 3.02
5142 11347 5.470098 TGTGTAAGCTTTGATCTTGTCCTTC 59.530 40.000 3.20 0.00 0.00 3.46
5305 11549 2.203337 TTTGCCAGCCTCGCAAGT 60.203 55.556 0.00 0.00 46.24 3.16
5306 11550 1.799258 CTTTGCCAGCCTCGCAAGTT 61.799 55.000 0.00 0.00 46.24 2.66
5339 11583 2.028130 CGGCCCAATAAAAGCATACCA 58.972 47.619 0.00 0.00 0.00 3.25
5342 11586 2.223711 GCCCAATAAAAGCATACCACCG 60.224 50.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.709147 CTCTCGGCGGCCATGAAAAG 61.709 60.000 20.71 6.06 0.00 2.27
209 245 4.189188 CCGTACGGAGCGGGACAG 62.189 72.222 30.64 0.00 44.98 3.51
222 258 3.138798 GCCCTCTCTCACGCCGTA 61.139 66.667 0.00 0.00 0.00 4.02
244 280 1.887198 TCCAACAGACGAGGAGAAGAC 59.113 52.381 0.00 0.00 0.00 3.01
342 393 4.154347 CTCCTGTCGCCAGAGCCC 62.154 72.222 0.00 0.00 41.50 5.19
343 394 4.828925 GCTCCTGTCGCCAGAGCC 62.829 72.222 0.00 0.00 41.50 4.70
344 395 3.308014 AAGCTCCTGTCGCCAGAGC 62.308 63.158 9.05 9.05 41.50 4.09
385 444 2.685897 CGGAAAATTGCCCCGATCTTTA 59.314 45.455 7.42 0.00 45.58 1.85
386 445 1.476488 CGGAAAATTGCCCCGATCTTT 59.524 47.619 7.42 0.00 45.58 2.52
419 479 2.036733 CCTCGTCTCTCTCTATCCGTCT 59.963 54.545 0.00 0.00 0.00 4.18
457 548 3.207677 GCAGGAGGCGAGACATATG 57.792 57.895 0.00 0.00 0.00 1.78
491 3820 3.371097 ATCCCACACGCCGTGCTAG 62.371 63.158 18.59 7.56 44.91 3.42
492 3821 3.387091 ATCCCACACGCCGTGCTA 61.387 61.111 18.59 0.11 44.91 3.49
1121 6492 4.041691 CAGAAAAGAGGGTTAGGGTTCAGA 59.958 45.833 0.00 0.00 0.00 3.27
1403 6784 5.186409 GGATGGGATAAAATCATGTGGATGG 59.814 44.000 0.00 0.00 36.02 3.51
1469 6859 3.201290 CCCTTCAGGAGTCAATCAATCG 58.799 50.000 0.00 0.00 38.24 3.34
1564 6973 4.679412 GCAATGGGCAGGTGTTTG 57.321 55.556 0.00 0.00 43.97 2.93
1626 7035 2.165845 ACGAGTAAATCAGAACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
1627 7036 3.436496 GACGAGTAAATCAGAACGGAGG 58.564 50.000 0.00 0.00 0.00 4.30
1628 7037 3.099362 CGACGAGTAAATCAGAACGGAG 58.901 50.000 0.00 0.00 0.00 4.63
1629 7038 2.485426 ACGACGAGTAAATCAGAACGGA 59.515 45.455 0.00 0.00 0.00 4.69
1630 7039 2.592897 CACGACGAGTAAATCAGAACGG 59.407 50.000 0.00 0.00 0.00 4.44
1631 7040 2.592897 CCACGACGAGTAAATCAGAACG 59.407 50.000 0.00 0.00 0.00 3.95
1632 7041 3.572584 ACCACGACGAGTAAATCAGAAC 58.427 45.455 0.00 0.00 0.00 3.01
1633 7042 3.928727 ACCACGACGAGTAAATCAGAA 57.071 42.857 0.00 0.00 0.00 3.02
1634 7043 3.928727 AACCACGACGAGTAAATCAGA 57.071 42.857 0.00 0.00 0.00 3.27
1635 7044 4.985044 AAAACCACGACGAGTAAATCAG 57.015 40.909 0.00 0.00 0.00 2.90
1636 7045 5.531634 ACTAAAACCACGACGAGTAAATCA 58.468 37.500 0.00 0.00 0.00 2.57
1637 7046 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
1638 7047 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
1639 7048 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
1640 7049 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1641 7050 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1642 7051 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1643 7052 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
1644 7053 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
1645 7054 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
1646 7055 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
1659 7068 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
1660 7069 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
1661 7070 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
1662 7071 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
1663 7072 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
1664 7073 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
1665 7074 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
1666 7075 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
1667 7076 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1668 7077 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
1669 7078 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
1670 7079 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
1671 7080 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
1672 7081 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
1673 7082 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
1674 7083 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
1675 7084 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
1676 7085 1.131883 CTCCGATTTACTCGTCGTGGT 59.868 52.381 0.00 0.00 46.18 4.16
1677 7086 1.823828 CTCCGATTTACTCGTCGTGG 58.176 55.000 0.00 0.00 46.18 4.94
1678 7087 1.189403 GCTCCGATTTACTCGTCGTG 58.811 55.000 0.00 0.00 46.18 4.35
1679 7088 0.247974 CGCTCCGATTTACTCGTCGT 60.248 55.000 0.00 0.00 46.18 4.34
1680 7089 0.928908 CCGCTCCGATTTACTCGTCG 60.929 60.000 0.00 0.00 46.18 5.12
1681 7090 0.379669 TCCGCTCCGATTTACTCGTC 59.620 55.000 0.00 0.00 46.18 4.20
1682 7091 0.381089 CTCCGCTCCGATTTACTCGT 59.619 55.000 0.00 0.00 46.18 4.18
1684 7093 0.032267 CCCTCCGCTCCGATTTACTC 59.968 60.000 0.00 0.00 0.00 2.59
1685 7094 0.396695 TCCCTCCGCTCCGATTTACT 60.397 55.000 0.00 0.00 0.00 2.24
1686 7095 0.032267 CTCCCTCCGCTCCGATTTAC 59.968 60.000 0.00 0.00 0.00 2.01
1687 7096 0.396695 ACTCCCTCCGCTCCGATTTA 60.397 55.000 0.00 0.00 0.00 1.40
1688 7097 0.396695 TACTCCCTCCGCTCCGATTT 60.397 55.000 0.00 0.00 0.00 2.17
1689 7098 0.824182 CTACTCCCTCCGCTCCGATT 60.824 60.000 0.00 0.00 0.00 3.34
1690 7099 1.228306 CTACTCCCTCCGCTCCGAT 60.228 63.158 0.00 0.00 0.00 4.18
1691 7100 2.192443 CTACTCCCTCCGCTCCGA 59.808 66.667 0.00 0.00 0.00 4.55
1692 7101 1.726533 GAACTACTCCCTCCGCTCCG 61.727 65.000 0.00 0.00 0.00 4.63
1693 7102 0.396001 AGAACTACTCCCTCCGCTCC 60.396 60.000 0.00 0.00 0.00 4.70
1694 7103 1.026584 GAGAACTACTCCCTCCGCTC 58.973 60.000 0.00 0.00 39.53 5.03
1695 7104 0.331954 TGAGAACTACTCCCTCCGCT 59.668 55.000 0.00 0.00 44.34 5.52
1696 7105 0.456628 GTGAGAACTACTCCCTCCGC 59.543 60.000 0.00 0.00 44.34 5.54
1697 7106 0.733729 CGTGAGAACTACTCCCTCCG 59.266 60.000 0.00 0.00 44.34 4.63
1698 7107 0.456628 GCGTGAGAACTACTCCCTCC 59.543 60.000 0.00 0.00 44.34 4.30
1699 7108 1.402613 GAGCGTGAGAACTACTCCCTC 59.597 57.143 0.00 0.00 44.34 4.30
1700 7109 1.465794 GAGCGTGAGAACTACTCCCT 58.534 55.000 0.00 0.00 44.34 4.20
1701 7110 0.456628 GGAGCGTGAGAACTACTCCC 59.543 60.000 0.00 0.00 44.34 4.30
1702 7111 1.174783 TGGAGCGTGAGAACTACTCC 58.825 55.000 0.00 0.00 45.87 3.85
1703 7112 2.480416 CCATGGAGCGTGAGAACTACTC 60.480 54.545 5.56 0.00 45.11 2.59
1704 7113 1.478510 CCATGGAGCGTGAGAACTACT 59.521 52.381 5.56 0.00 0.00 2.57
1705 7114 1.927895 CCATGGAGCGTGAGAACTAC 58.072 55.000 5.56 0.00 0.00 2.73
1724 7133 0.536006 AGACAGAGCAAAGGGTGTGC 60.536 55.000 0.00 0.00 39.21 4.57
1787 7196 4.729918 GGTGCTGCTCCCCCACAG 62.730 72.222 9.55 0.00 36.96 3.66
1819 7235 5.471116 TCATTCATTGACTCCAACTTCACAG 59.529 40.000 0.00 0.00 34.72 3.66
1870 7287 4.313282 ACATGCGAGACCATCTGATAATG 58.687 43.478 0.00 0.00 0.00 1.90
1872 7289 5.509670 CCTTACATGCGAGACCATCTGATAA 60.510 44.000 0.00 0.00 0.00 1.75
1874 7291 3.244009 CCTTACATGCGAGACCATCTGAT 60.244 47.826 0.00 0.00 0.00 2.90
1886 7303 0.390860 CCTCCTCCTCCTTACATGCG 59.609 60.000 0.00 0.00 0.00 4.73
1887 7304 1.691434 CTCCTCCTCCTCCTTACATGC 59.309 57.143 0.00 0.00 0.00 4.06
1904 7321 1.065199 TGTCAATCAGCCACATCCTCC 60.065 52.381 0.00 0.00 0.00 4.30
1907 7324 5.779529 AAATATGTCAATCAGCCACATCC 57.220 39.130 0.00 0.00 32.88 3.51
1908 7325 7.263100 TGTAAATATGTCAATCAGCCACATC 57.737 36.000 0.00 0.00 32.88 3.06
1909 7326 7.557358 TCTTGTAAATATGTCAATCAGCCACAT 59.443 33.333 0.00 0.00 35.00 3.21
1960 7398 8.702819 AGAAAACCAAGAGTACTAGTAAACACT 58.297 33.333 3.61 0.00 0.00 3.55
1971 7409 5.978934 TTCGAACAGAAAACCAAGAGTAC 57.021 39.130 0.00 0.00 35.61 2.73
1990 7428 8.120465 AGTTCAAATATAAAAGCGTGGTATTCG 58.880 33.333 0.00 0.00 0.00 3.34
1999 7437 9.478019 CTCAGTACAAGTTCAAATATAAAAGCG 57.522 33.333 0.00 0.00 0.00 4.68
2019 7457 0.679505 AGCAGTGCCGAAACTCAGTA 59.320 50.000 12.58 0.00 0.00 2.74
2085 7523 3.625764 GGGCACATTGAGACGCTATTTTA 59.374 43.478 0.00 0.00 0.00 1.52
2147 7585 2.299013 ACAGAACGAGATGTACCAAGCA 59.701 45.455 0.00 0.00 0.00 3.91
2148 7586 2.960819 ACAGAACGAGATGTACCAAGC 58.039 47.619 0.00 0.00 0.00 4.01
2161 7599 5.183140 AGGTTGGGATAAATCAAACAGAACG 59.817 40.000 8.92 0.00 33.36 3.95
2173 7611 5.914033 CGATAGTCTTCAGGTTGGGATAAA 58.086 41.667 0.00 0.00 0.00 1.40
2185 7623 7.097192 ATTTGAGCAAAGTACGATAGTCTTCA 58.903 34.615 1.92 0.00 41.46 3.02
2193 7631 6.649141 TCAGTTGTATTTGAGCAAAGTACGAT 59.351 34.615 1.92 0.00 33.32 3.73
2195 7633 6.223138 TCAGTTGTATTTGAGCAAAGTACG 57.777 37.500 1.92 0.00 33.32 3.67
2222 7660 1.987770 CCGAATTGTGCAAGCAATCAC 59.012 47.619 3.27 1.59 38.03 3.06
2224 7662 2.352503 ACCGAATTGTGCAAGCAATC 57.647 45.000 3.27 0.00 38.03 2.67
2225 7663 3.932545 TTACCGAATTGTGCAAGCAAT 57.067 38.095 0.00 0.00 40.43 3.56
2227 7665 2.359214 TGTTTACCGAATTGTGCAAGCA 59.641 40.909 0.00 0.00 0.00 3.91
2228 7666 3.006659 TGTTTACCGAATTGTGCAAGC 57.993 42.857 0.00 0.00 0.00 4.01
2229 7667 3.733727 GGTTGTTTACCGAATTGTGCAAG 59.266 43.478 0.00 0.00 37.12 4.01
2230 7668 3.707793 GGTTGTTTACCGAATTGTGCAA 58.292 40.909 0.00 0.00 37.12 4.08
2240 7678 9.123023 TTCTGGCTAGAATTTGGTTGTTTACCG 62.123 40.741 8.66 0.00 42.75 4.02
2241 7679 6.015772 TTCTGGCTAGAATTTGGTTGTTTACC 60.016 38.462 8.66 0.00 41.45 2.85
2242 7680 6.569179 TCTGGCTAGAATTTGGTTGTTTAC 57.431 37.500 0.00 0.00 0.00 2.01
2243 7681 6.547880 TGTTCTGGCTAGAATTTGGTTGTTTA 59.452 34.615 16.14 0.00 44.27 2.01
2244 7682 5.362430 TGTTCTGGCTAGAATTTGGTTGTTT 59.638 36.000 16.14 0.00 44.27 2.83
2356 8022 6.418101 ACAGATGTACATTGGCTACAGATTT 58.582 36.000 10.30 0.00 0.00 2.17
2360 8026 4.758688 TGACAGATGTACATTGGCTACAG 58.241 43.478 10.30 0.00 0.00 2.74
2437 8103 1.675310 CCTTGCCAACAGATCCGCA 60.675 57.895 0.00 0.00 0.00 5.69
2497 8163 7.929785 TCCGTGGAAATATCTACATCCTTTAAC 59.070 37.037 0.00 0.00 36.90 2.01
2519 8186 1.207329 CTAGGCAGGCTAAAAGTCCGT 59.793 52.381 5.03 0.00 0.00 4.69
2520 8187 1.473434 CCTAGGCAGGCTAAAAGTCCG 60.473 57.143 5.03 0.00 34.35 4.79
2577 8245 3.147629 CGTAGTATGGATCGGAAGGAGT 58.852 50.000 0.00 0.00 0.00 3.85
2578 8246 3.147629 ACGTAGTATGGATCGGAAGGAG 58.852 50.000 0.00 0.00 41.94 3.69
2579 8247 3.219176 ACGTAGTATGGATCGGAAGGA 57.781 47.619 0.00 0.00 41.94 3.36
2580 8248 7.075520 ATCTAGACGTAGTATGGATCGGAAGG 61.076 46.154 0.00 0.00 46.64 3.46
2581 8249 5.875910 ATCTAGACGTAGTATGGATCGGAAG 59.124 44.000 0.00 0.00 46.64 3.46
2582 8250 5.802465 ATCTAGACGTAGTATGGATCGGAA 58.198 41.667 0.00 0.00 46.64 4.30
2583 8251 5.417754 ATCTAGACGTAGTATGGATCGGA 57.582 43.478 0.00 0.00 46.64 4.55
2584 8252 6.104665 TGTATCTAGACGTAGTATGGATCGG 58.895 44.000 0.00 0.00 46.64 4.18
2585 8253 7.707464 AGATGTATCTAGACGTAGTATGGATCG 59.293 40.741 0.00 0.00 46.64 3.69
2586 8254 8.822855 CAGATGTATCTAGACGTAGTATGGATC 58.177 40.741 0.00 0.00 46.64 3.36
2588 8256 7.677892 ACAGATGTATCTAGACGTAGTATGGA 58.322 38.462 0.00 0.00 44.55 3.41
2589 8257 7.908827 ACAGATGTATCTAGACGTAGTATGG 57.091 40.000 0.00 0.00 36.45 2.74
2590 8258 9.600646 CAAACAGATGTATCTAGACGTAGTATG 57.399 37.037 0.00 0.00 36.45 2.39
2591 8259 9.557061 TCAAACAGATGTATCTAGACGTAGTAT 57.443 33.333 0.00 0.00 36.45 2.12
2592 8260 8.953368 TCAAACAGATGTATCTAGACGTAGTA 57.047 34.615 0.00 0.00 36.45 1.82
2593 8261 7.467539 GCTCAAACAGATGTATCTAGACGTAGT 60.468 40.741 0.00 0.00 38.68 2.73
2594 8262 6.853872 GCTCAAACAGATGTATCTAGACGTAG 59.146 42.308 0.00 0.00 34.85 3.51
2595 8263 6.511282 CGCTCAAACAGATGTATCTAGACGTA 60.511 42.308 0.00 0.00 34.85 3.57
2596 8264 5.583495 GCTCAAACAGATGTATCTAGACGT 58.417 41.667 0.00 0.00 34.85 4.34
2597 8265 4.672862 CGCTCAAACAGATGTATCTAGACG 59.327 45.833 0.00 0.00 34.85 4.18
2598 8266 5.683743 GTCGCTCAAACAGATGTATCTAGAC 59.316 44.000 0.00 0.00 34.85 2.59
2599 8267 5.357032 TGTCGCTCAAACAGATGTATCTAGA 59.643 40.000 0.00 0.00 34.85 2.43
2600 8268 5.582550 TGTCGCTCAAACAGATGTATCTAG 58.417 41.667 0.00 0.00 34.85 2.43
2601 8269 5.576447 TGTCGCTCAAACAGATGTATCTA 57.424 39.130 0.00 0.00 34.85 1.98
2602 8270 4.456280 TGTCGCTCAAACAGATGTATCT 57.544 40.909 0.00 0.00 37.72 1.98
2603 8271 4.627467 ACTTGTCGCTCAAACAGATGTATC 59.373 41.667 0.00 0.00 35.48 2.24
2604 8272 4.569943 ACTTGTCGCTCAAACAGATGTAT 58.430 39.130 0.00 0.00 35.48 2.29
2605 8273 3.990092 ACTTGTCGCTCAAACAGATGTA 58.010 40.909 0.00 0.00 35.48 2.29
2606 8274 2.838736 ACTTGTCGCTCAAACAGATGT 58.161 42.857 0.00 0.00 35.48 3.06
2607 8275 4.990543 TTACTTGTCGCTCAAACAGATG 57.009 40.909 0.00 0.00 35.48 2.90
2608 8276 6.258727 CCATATTACTTGTCGCTCAAACAGAT 59.741 38.462 0.00 0.00 35.48 2.90
2609 8277 5.580691 CCATATTACTTGTCGCTCAAACAGA 59.419 40.000 0.00 0.00 35.48 3.41
2610 8278 5.580691 TCCATATTACTTGTCGCTCAAACAG 59.419 40.000 0.00 0.00 35.48 3.16
2611 8279 5.483811 TCCATATTACTTGTCGCTCAAACA 58.516 37.500 0.00 0.00 35.48 2.83
2612 8280 6.562270 CGATCCATATTACTTGTCGCTCAAAC 60.562 42.308 0.00 0.00 35.48 2.93
2613 8281 5.462068 CGATCCATATTACTTGTCGCTCAAA 59.538 40.000 0.00 0.00 35.48 2.69
2614 8282 4.982295 CGATCCATATTACTTGTCGCTCAA 59.018 41.667 0.00 0.00 34.61 3.02
2615 8283 4.546570 CGATCCATATTACTTGTCGCTCA 58.453 43.478 0.00 0.00 0.00 4.26
2616 8284 3.921021 CCGATCCATATTACTTGTCGCTC 59.079 47.826 0.00 0.00 0.00 5.03
2617 8285 3.572682 TCCGATCCATATTACTTGTCGCT 59.427 43.478 0.00 0.00 0.00 4.93
2618 8286 3.909430 TCCGATCCATATTACTTGTCGC 58.091 45.455 0.00 0.00 0.00 5.19
2619 8287 4.486090 CCTCCGATCCATATTACTTGTCG 58.514 47.826 0.00 0.00 0.00 4.35
2620 8288 4.527038 TCCCTCCGATCCATATTACTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
2621 8289 4.489737 TCCCTCCGATCCATATTACTTGT 58.510 43.478 0.00 0.00 0.00 3.16
2622 8290 4.528596 ACTCCCTCCGATCCATATTACTTG 59.471 45.833 0.00 0.00 0.00 3.16
2623 8291 4.753186 ACTCCCTCCGATCCATATTACTT 58.247 43.478 0.00 0.00 0.00 2.24
2624 8292 4.405756 ACTCCCTCCGATCCATATTACT 57.594 45.455 0.00 0.00 0.00 2.24
2625 8293 6.793505 ATTACTCCCTCCGATCCATATTAC 57.206 41.667 0.00 0.00 0.00 1.89
2626 8294 7.415908 TGTATTACTCCCTCCGATCCATATTA 58.584 38.462 0.00 0.00 0.00 0.98
2627 8295 6.261435 TGTATTACTCCCTCCGATCCATATT 58.739 40.000 0.00 0.00 0.00 1.28
2628 8296 5.838955 TGTATTACTCCCTCCGATCCATAT 58.161 41.667 0.00 0.00 0.00 1.78
2629 8297 5.265290 TGTATTACTCCCTCCGATCCATA 57.735 43.478 0.00 0.00 0.00 2.74
2630 8298 4.127918 TGTATTACTCCCTCCGATCCAT 57.872 45.455 0.00 0.00 0.00 3.41
2631 8299 3.605726 TGTATTACTCCCTCCGATCCA 57.394 47.619 0.00 0.00 0.00 3.41
2632 8300 5.125739 CAGTATGTATTACTCCCTCCGATCC 59.874 48.000 0.00 0.00 39.19 3.36
2633 8301 6.197364 CAGTATGTATTACTCCCTCCGATC 57.803 45.833 0.00 0.00 39.19 3.69
2676 8344 5.012768 ACCTGGCATAGTACTAAAACTGTGT 59.987 40.000 6.70 0.00 39.86 3.72
2679 8347 5.938125 ACAACCTGGCATAGTACTAAAACTG 59.062 40.000 6.70 1.72 0.00 3.16
2680 8348 6.123045 ACAACCTGGCATAGTACTAAAACT 57.877 37.500 6.70 0.00 0.00 2.66
2681 8349 6.428771 TCAACAACCTGGCATAGTACTAAAAC 59.571 38.462 6.70 0.68 0.00 2.43
2699 8367 5.106157 CCCATGGAGAAATACAGTCAACAAC 60.106 44.000 15.22 0.00 0.00 3.32
2717 8385 0.686789 TGTGACACTGACTCCCATGG 59.313 55.000 4.14 4.14 0.00 3.66
2720 8388 1.496060 AAGTGTGACACTGACTCCCA 58.504 50.000 20.19 0.00 44.62 4.37
2744 8413 1.269448 GGTTTGCGAGCCTTTGATGAA 59.731 47.619 0.00 0.00 0.00 2.57
2745 8414 0.881118 GGTTTGCGAGCCTTTGATGA 59.119 50.000 0.00 0.00 0.00 2.92
2759 8428 4.929808 ACTTATGCACTAGACTTCGGTTTG 59.070 41.667 0.00 0.00 0.00 2.93
2772 8441 9.326413 GTTGAGTATAATAACCACTTATGCACT 57.674 33.333 0.00 0.00 0.00 4.40
2773 8442 9.326413 AGTTGAGTATAATAACCACTTATGCAC 57.674 33.333 0.00 0.00 0.00 4.57
2779 8448 8.603304 ACTCCAAGTTGAGTATAATAACCACTT 58.397 33.333 3.87 0.00 43.65 3.16
2801 8470 8.615211 CCGTACCCATTTTAAGTTTATAACTCC 58.385 37.037 0.00 0.00 41.91 3.85
2812 8481 7.769970 TGGAATACTTACCGTACCCATTTTAAG 59.230 37.037 0.00 0.00 32.47 1.85
2813 8482 7.628234 TGGAATACTTACCGTACCCATTTTAA 58.372 34.615 0.00 0.00 32.47 1.52
2814 8483 7.192852 TGGAATACTTACCGTACCCATTTTA 57.807 36.000 0.00 0.00 32.47 1.52
2815 8484 6.064735 TGGAATACTTACCGTACCCATTTT 57.935 37.500 0.00 0.00 32.47 1.82
2817 8486 5.367352 TGATGGAATACTTACCGTACCCATT 59.633 40.000 0.00 0.00 41.30 3.16
2818 8487 4.903049 TGATGGAATACTTACCGTACCCAT 59.097 41.667 0.00 0.00 42.65 4.00
2819 8488 4.288398 TGATGGAATACTTACCGTACCCA 58.712 43.478 0.00 0.00 38.05 4.51
2820 8489 4.942761 TGATGGAATACTTACCGTACCC 57.057 45.455 0.00 0.00 0.00 3.69
2821 8490 6.518493 TCAATGATGGAATACTTACCGTACC 58.482 40.000 0.00 0.00 0.00 3.34
2822 8491 7.870954 TGATCAATGATGGAATACTTACCGTAC 59.129 37.037 0.00 0.00 0.00 3.67
2823 8492 7.958088 TGATCAATGATGGAATACTTACCGTA 58.042 34.615 0.00 0.00 0.00 4.02
2824 8493 6.826668 TGATCAATGATGGAATACTTACCGT 58.173 36.000 0.00 0.00 0.00 4.83
2825 8494 7.154656 TCTGATCAATGATGGAATACTTACCG 58.845 38.462 0.00 0.00 0.00 4.02
2826 8495 8.944029 CATCTGATCAATGATGGAATACTTACC 58.056 37.037 14.34 0.00 37.13 2.85
2827 8496 9.716531 TCATCTGATCAATGATGGAATACTTAC 57.283 33.333 19.43 0.00 40.13 2.34
2837 8506 4.969484 TGGGACTCATCTGATCAATGATG 58.031 43.478 15.51 15.51 40.82 3.07
2843 8512 2.433604 GCTCTTGGGACTCATCTGATCA 59.566 50.000 0.00 0.00 0.00 2.92
2844 8513 2.433604 TGCTCTTGGGACTCATCTGATC 59.566 50.000 0.00 0.00 0.00 2.92
2845 8514 2.475155 TGCTCTTGGGACTCATCTGAT 58.525 47.619 0.00 0.00 0.00 2.90
2846 8515 1.942776 TGCTCTTGGGACTCATCTGA 58.057 50.000 0.00 0.00 0.00 3.27
2859 8531 7.558081 GGGACTTCCTTTAAAGATTATGCTCTT 59.442 37.037 16.98 0.00 35.11 2.85
2878 8550 4.712122 TCAACAACAAAAGTGGGACTTC 57.288 40.909 0.00 0.00 37.47 3.01
3026 8699 3.621558 AGACCACTAATTAAAGGCCAGC 58.378 45.455 5.01 0.00 0.00 4.85
3127 8881 7.291182 TGCTAGAGCTTTAGGAATTAGGATTCT 59.709 37.037 12.84 0.00 40.57 2.40
3128 8882 7.445945 TGCTAGAGCTTTAGGAATTAGGATTC 58.554 38.462 12.84 0.00 42.66 2.52
3130 8884 7.291182 TCTTGCTAGAGCTTTAGGAATTAGGAT 59.709 37.037 16.87 0.00 42.66 3.24
3131 8885 6.611642 TCTTGCTAGAGCTTTAGGAATTAGGA 59.388 38.462 16.87 9.21 42.66 2.94
3133 8887 8.900983 AATCTTGCTAGAGCTTTAGGAATTAG 57.099 34.615 16.87 7.48 42.66 1.73
3135 8889 9.336171 CTTAATCTTGCTAGAGCTTTAGGAATT 57.664 33.333 16.87 12.34 42.66 2.17
3136 8890 7.936301 CCTTAATCTTGCTAGAGCTTTAGGAAT 59.064 37.037 16.87 6.95 42.66 3.01
3137 8891 7.092846 ACCTTAATCTTGCTAGAGCTTTAGGAA 60.093 37.037 15.88 15.88 42.66 3.36
3172 8927 4.683400 GCAAAGTAGGCATACAGCTCCTTA 60.683 45.833 11.63 0.00 44.79 2.69
3191 8946 2.799412 GCAAAACATCGAACCATGCAAA 59.201 40.909 0.00 0.00 32.80 3.68
3199 8954 4.739716 ACTCAATTGTGCAAAACATCGAAC 59.260 37.500 5.13 0.00 38.99 3.95
3204 8959 6.740411 ACAAAACTCAATTGTGCAAAACAT 57.260 29.167 5.13 0.00 39.43 2.71
3216 8971 7.111247 TGATTCTGGAAACACAAAACTCAAT 57.889 32.000 0.00 0.00 35.60 2.57
3218 8973 6.713762 ATGATTCTGGAAACACAAAACTCA 57.286 33.333 0.00 0.00 35.60 3.41
3219 8974 7.202526 TGAATGATTCTGGAAACACAAAACTC 58.797 34.615 6.73 0.00 35.60 3.01
3221 8976 7.652909 TCATGAATGATTCTGGAAACACAAAAC 59.347 33.333 6.73 0.00 35.60 2.43
3256 9011 1.680338 GGTTGCTGCAAGGGGTATAG 58.320 55.000 16.53 0.00 0.00 1.31
3261 9016 3.944250 ATCCGGTTGCTGCAAGGGG 62.944 63.158 24.15 22.18 0.00 4.79
3278 9034 4.410099 TGCTCCCATTGTCTCAAAAGAAT 58.590 39.130 0.00 0.00 31.93 2.40
3310 9066 3.691118 TGCATGTCAGAACAATCTTAGCC 59.309 43.478 0.00 0.00 39.30 3.93
3395 9154 4.342862 AAGCGCTACATCATAATCCAGT 57.657 40.909 12.05 0.00 0.00 4.00
3413 9172 3.801114 ACACAAGTGGGAAAAGAAAGC 57.199 42.857 5.08 0.00 34.19 3.51
3604 9381 2.041620 AGCAATTGGTCTCAAAGGGCTA 59.958 45.455 3.82 0.00 36.51 3.93
3751 9555 0.396060 CCTGAAGGATAGCTCTGGCC 59.604 60.000 0.00 0.00 36.83 5.36
3759 9563 9.224267 CATCAATATTAACACCCTGAAGGATAG 57.776 37.037 0.00 0.00 39.89 2.08
3955 9760 9.582431 AAAACTGCCTTTTTCTAACTTTAGTTC 57.418 29.630 0.00 0.00 39.31 3.01
4060 9869 2.354821 GGTAACGGTCATTTCATCAGGC 59.645 50.000 0.00 0.00 0.00 4.85
4067 9876 8.674607 AGAATAAGAATTGGTAACGGTCATTTC 58.325 33.333 0.00 0.00 42.51 2.17
4070 9879 7.565680 AGAGAATAAGAATTGGTAACGGTCAT 58.434 34.615 0.00 0.00 42.51 3.06
4088 9897 5.128827 CCAGCCAGTACCTACAAAGAGAATA 59.871 44.000 0.00 0.00 0.00 1.75
4205 10017 6.707440 TTAGCACAAGGTGAGAAATTTTGA 57.293 33.333 0.00 0.00 35.23 2.69
4244 10056 4.715297 TCTATAAAGAACCAGAGGACCACC 59.285 45.833 0.00 0.00 0.00 4.61
4245 10057 5.422650 ACTCTATAAAGAACCAGAGGACCAC 59.577 44.000 0.00 0.00 39.07 4.16
4314 10126 9.740710 AAACAGAAAAGTATTACTAGGCTTCAT 57.259 29.630 0.00 0.00 0.00 2.57
4323 10135 6.038936 ACAACGCCAAACAGAAAAGTATTACT 59.961 34.615 0.00 0.00 0.00 2.24
4337 10149 1.588667 CTGCACCACAACGCCAAAC 60.589 57.895 0.00 0.00 0.00 2.93
4338 10150 2.780094 CCTGCACCACAACGCCAAA 61.780 57.895 0.00 0.00 0.00 3.28
4341 10153 4.947147 TCCCTGCACCACAACGCC 62.947 66.667 0.00 0.00 0.00 5.68
4342 10154 3.357079 CTCCCTGCACCACAACGC 61.357 66.667 0.00 0.00 0.00 4.84
4343 10155 2.669569 CCTCCCTGCACCACAACG 60.670 66.667 0.00 0.00 0.00 4.10
4455 10460 5.132816 AGGAACTATATGTTTGGAAGGGGAG 59.867 44.000 0.00 0.00 39.30 4.30
4476 10481 8.612619 GCGTTCAAAATTCATAAGATAGAAGGA 58.387 33.333 0.00 0.00 0.00 3.36
4481 10486 7.580523 CACGAGCGTTCAAAATTCATAAGATAG 59.419 37.037 0.00 0.00 0.00 2.08
4500 10509 5.369187 GTGAATATTCATGAATCACGAGCG 58.631 41.667 23.95 0.00 39.73 5.03
4541 10551 3.896479 GCTACTGCCTGGTCTTGC 58.104 61.111 0.00 0.00 0.00 4.01
4675 10688 4.323417 TGCGATCCAACAAACATAGTCTT 58.677 39.130 0.00 0.00 0.00 3.01
4676 10689 3.935203 CTGCGATCCAACAAACATAGTCT 59.065 43.478 0.00 0.00 0.00 3.24
4692 10705 1.377725 CCTGGCCTTCAACTGCGAT 60.378 57.895 3.32 0.00 0.00 4.58
4723 10736 0.452987 CAATGCATGAGGAACGGGTG 59.547 55.000 0.00 0.00 0.00 4.61
4728 10741 1.372582 TCGAGCAATGCATGAGGAAC 58.627 50.000 8.35 0.00 0.00 3.62
4741 10754 1.205655 CTGGGTCAGAAGAATCGAGCA 59.794 52.381 0.00 0.00 32.44 4.26
4745 10758 1.480137 AGAGCTGGGTCAGAAGAATCG 59.520 52.381 0.00 0.00 32.44 3.34
4815 10828 8.038351 TCATCGTCATCATCAAGTAGGTAAAAA 58.962 33.333 0.00 0.00 0.00 1.94
4816 10829 7.552459 TCATCGTCATCATCAAGTAGGTAAAA 58.448 34.615 0.00 0.00 0.00 1.52
4817 10830 7.107639 TCATCGTCATCATCAAGTAGGTAAA 57.892 36.000 0.00 0.00 0.00 2.01
4836 10851 3.060940 GTGTTGCACTATCGTCATCATCG 60.061 47.826 0.00 0.00 0.00 3.84
4845 10860 2.224079 ACAAAGCTGTGTTGCACTATCG 59.776 45.455 2.82 0.00 35.11 2.92
4878 10893 3.110178 CGGTGTCGCGGAAAGGAC 61.110 66.667 6.13 0.00 0.00 3.85
4879 10894 2.858862 TTCGGTGTCGCGGAAAGGA 61.859 57.895 6.13 0.00 34.19 3.36
4913 10932 4.720273 GGGGGAGAAGATAACCTAGTTTGA 59.280 45.833 0.00 0.00 0.00 2.69
4989 11175 4.308899 AGAGTATAAGCACATGTCCGAC 57.691 45.455 0.00 0.00 0.00 4.79
4992 11178 4.141711 TGGGAAGAGTATAAGCACATGTCC 60.142 45.833 0.00 0.00 0.00 4.02
4993 11179 5.023533 TGGGAAGAGTATAAGCACATGTC 57.976 43.478 0.00 0.00 0.00 3.06
5006 11192 3.775316 CCAAGTAGTACCATGGGAAGAGT 59.225 47.826 18.09 0.00 0.00 3.24
5030 11216 0.108585 GTGGTTGAGAAGACAGGGCA 59.891 55.000 0.00 0.00 0.00 5.36
5101 11306 2.624838 ACACACAAATTTGGAGCAGAGG 59.375 45.455 21.74 5.47 0.00 3.69
5115 11320 5.008613 GGACAAGATCAAAGCTTACACACAA 59.991 40.000 0.00 0.00 0.00 3.33
5119 11324 5.106515 GGAAGGACAAGATCAAAGCTTACAC 60.107 44.000 0.00 0.00 0.00 2.90
5125 11330 3.078891 AGGGAAGGACAAGATCAAAGC 57.921 47.619 0.00 0.00 0.00 3.51
5136 11341 0.316204 TTCACGACGAAGGGAAGGAC 59.684 55.000 0.00 0.00 0.00 3.85
5142 11347 1.726791 CTTGATGTTCACGACGAAGGG 59.273 52.381 0.00 0.00 33.09 3.95
5176 11392 4.916412 ACGACTCGTGTCAGAACG 57.084 55.556 17.02 6.31 43.06 3.95
5185 11401 0.664767 GCTTCAAGCTCACGACTCGT 60.665 55.000 0.71 0.00 38.39 4.18
5186 11402 2.066000 GCTTCAAGCTCACGACTCG 58.934 57.895 0.71 0.00 38.45 4.18
5228 11472 4.034510 CGAAATCCTGGCAGAATACTTCAC 59.965 45.833 17.94 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.