Multiple sequence alignment - TraesCS1B01G352500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G352500 chr1B 100.000 5246 0 0 1 5246 583393909 583399154 0.000000e+00 9688.0
1 TraesCS1B01G352500 chr1B 94.118 119 7 0 1916 2034 3240089 3239971 1.160000e-41 182.0
2 TraesCS1B01G352500 chr1A 88.030 2665 203 52 2630 5246 530513564 530516160 0.000000e+00 3048.0
3 TraesCS1B01G352500 chr1A 88.630 1935 143 36 30 1919 530510961 530512863 0.000000e+00 2283.0
4 TraesCS1B01G352500 chr1A 94.697 528 25 2 2030 2554 530512859 530513386 0.000000e+00 817.0
5 TraesCS1B01G352500 chr1D 91.946 1937 118 22 1 1919 431954269 431956185 0.000000e+00 2678.0
6 TraesCS1B01G352500 chr1D 91.277 1880 119 20 2030 3899 431956181 431958025 0.000000e+00 2521.0
7 TraesCS1B01G352500 chr1D 89.971 698 46 9 4551 5246 431958779 431959454 0.000000e+00 880.0
8 TraesCS1B01G352500 chr1D 89.118 680 51 16 3898 4573 431958107 431958767 0.000000e+00 824.0
9 TraesCS1B01G352500 chr1D 87.974 607 64 8 949 1552 369483188 369482588 0.000000e+00 708.0
10 TraesCS1B01G352500 chr1D 88.000 125 8 7 530 652 415976726 415976607 1.970000e-29 141.0
11 TraesCS1B01G352500 chr6D 86.131 959 101 24 949 1898 59757743 59756808 0.000000e+00 1005.0
12 TraesCS1B01G352500 chr7D 84.567 959 93 29 949 1898 429959963 429959051 0.000000e+00 900.0
13 TraesCS1B01G352500 chr5A 88.287 683 73 6 949 1627 545944153 545944832 0.000000e+00 811.0
14 TraesCS1B01G352500 chr5A 86.854 213 18 8 1690 1898 545944862 545945068 4.090000e-56 230.0
15 TraesCS1B01G352500 chr7B 88.814 447 38 11 1457 1898 559712236 559711797 5.980000e-149 538.0
16 TraesCS1B01G352500 chr4B 88.470 451 41 10 1452 1898 603004956 603005399 7.730000e-148 534.0
17 TraesCS1B01G352500 chr6B 87.781 401 43 5 1446 1842 693623109 693623507 1.030000e-126 464.0
18 TraesCS1B01G352500 chr5B 79.182 269 42 11 541 803 232663812 232663552 1.940000e-39 174.0
19 TraesCS1B01G352500 chr5B 91.803 122 9 1 1917 2038 653710095 653709975 9.030000e-38 169.0
20 TraesCS1B01G352500 chr2D 92.437 119 9 0 1916 2034 441085885 441085767 2.510000e-38 171.0
21 TraesCS1B01G352500 chr2D 90.323 124 12 0 1916 2039 7396467 7396590 4.200000e-36 163.0
22 TraesCS1B01G352500 chr3D 92.373 118 9 0 1918 2035 26231205 26231088 9.030000e-38 169.0
23 TraesCS1B01G352500 chr3D 79.798 99 17 3 530 626 602472515 602472612 9.430000e-08 69.4
24 TraesCS1B01G352500 chr5D 92.241 116 9 0 1919 2034 396814088 396814203 1.170000e-36 165.0
25 TraesCS1B01G352500 chr4D 90.476 126 10 2 1914 2039 461464225 461464102 1.170000e-36 165.0
26 TraesCS1B01G352500 chr6A 90.909 121 11 0 1918 2038 537483503 537483623 4.200000e-36 163.0
27 TraesCS1B01G352500 chr2A 87.681 138 15 2 1901 2038 573658291 573658426 5.440000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G352500 chr1B 583393909 583399154 5245 False 9688.000000 9688 100.000000 1 5246 1 chr1B.!!$F1 5245
1 TraesCS1B01G352500 chr1A 530510961 530516160 5199 False 2049.333333 3048 90.452333 30 5246 3 chr1A.!!$F1 5216
2 TraesCS1B01G352500 chr1D 431954269 431959454 5185 False 1725.750000 2678 90.578000 1 5246 4 chr1D.!!$F1 5245
3 TraesCS1B01G352500 chr1D 369482588 369483188 600 True 708.000000 708 87.974000 949 1552 1 chr1D.!!$R1 603
4 TraesCS1B01G352500 chr6D 59756808 59757743 935 True 1005.000000 1005 86.131000 949 1898 1 chr6D.!!$R1 949
5 TraesCS1B01G352500 chr7D 429959051 429959963 912 True 900.000000 900 84.567000 949 1898 1 chr7D.!!$R1 949
6 TraesCS1B01G352500 chr5A 545944153 545945068 915 False 520.500000 811 87.570500 949 1898 2 chr5A.!!$F1 949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 177 0.094730 GGCGGAAATGAGAAACGTCG 59.905 55.0 0.00 0.0 0.00 5.12 F
1187 1237 0.320073 TGTACACAGTAAGCCACGGC 60.320 55.0 0.00 0.0 42.33 5.68 F
1268 1323 0.322456 TTTTCGGTGCCATCAGGGAG 60.322 55.0 0.00 0.0 40.01 4.30 F
2279 2342 0.102481 CATGCAGCATCAAGAAGGGC 59.898 55.0 4.38 0.0 0.00 5.19 F
2821 3021 0.179108 GTGGAGTAGGCATGGTCGTC 60.179 60.0 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2011 2072 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.0 0.0 0.0 0.00 2.12 R
2014 2075 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.0 0.0 0.0 0.00 2.17 R
2986 3186 0.037975 CACCAGCATCCAAAGCAACC 60.038 55.0 0.0 0.0 0.00 3.77 R
3101 3301 0.324943 CAAATCCACTGGGTCGGAGT 59.675 55.0 0.0 0.0 33.97 3.85 R
4480 4802 0.455410 ACCAATGCACACACACACAC 59.545 50.0 0.0 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 0.903454 AGATCGACAACCCCGACCTT 60.903 55.000 0.00 0.00 38.97 3.50
59 61 1.383248 CCGACCTTCCCTCCCATCT 60.383 63.158 0.00 0.00 0.00 2.90
153 161 4.932200 AGAGTAAAGAACATGAAAGAGGCG 59.068 41.667 0.00 0.00 0.00 5.52
167 175 1.002087 AGAGGCGGAAATGAGAAACGT 59.998 47.619 0.00 0.00 0.00 3.99
169 177 0.094730 GGCGGAAATGAGAAACGTCG 59.905 55.000 0.00 0.00 0.00 5.12
187 195 3.099362 GTCGAGTACAACATAGACGCAG 58.901 50.000 0.00 0.00 0.00 5.18
234 242 2.017049 GAGCCCGCTTCACAAACATAT 58.983 47.619 0.00 0.00 0.00 1.78
235 243 2.423538 GAGCCCGCTTCACAAACATATT 59.576 45.455 0.00 0.00 0.00 1.28
270 278 6.294508 CGACCAATCTTTTGAAACCCATTAGT 60.295 38.462 0.00 0.00 34.60 2.24
283 291 9.287373 TGAAACCCATTAGTAACGTAAGATTTT 57.713 29.630 0.00 0.00 43.62 1.82
367 375 5.895636 TCACTGCGGAACATATTTGAAAT 57.104 34.783 0.00 0.00 0.00 2.17
368 376 6.993786 TCACTGCGGAACATATTTGAAATA 57.006 33.333 0.00 0.00 0.00 1.40
409 417 9.129532 GAAATAAAGAAGGATGGTGAGATTCAT 57.870 33.333 0.00 0.00 0.00 2.57
460 468 1.197721 CAACCCGTGTCTCAAAGCATC 59.802 52.381 0.00 0.00 0.00 3.91
475 483 2.030958 CATCGCTGAGTGCTGCACA 61.031 57.895 31.90 13.65 38.72 4.57
521 534 2.861750 GCGCATGTTCCATGTCACAAAA 60.862 45.455 0.30 0.00 0.00 2.44
522 535 2.981805 CGCATGTTCCATGTCACAAAAG 59.018 45.455 6.13 0.00 0.00 2.27
523 536 2.733026 GCATGTTCCATGTCACAAAAGC 59.267 45.455 6.13 1.29 0.00 3.51
524 537 3.799574 GCATGTTCCATGTCACAAAAGCA 60.800 43.478 6.13 0.00 0.00 3.91
525 538 4.562082 CATGTTCCATGTCACAAAAGCAT 58.438 39.130 0.00 0.00 0.00 3.79
526 539 3.979948 TGTTCCATGTCACAAAAGCATG 58.020 40.909 0.00 0.00 39.54 4.06
527 540 3.384146 TGTTCCATGTCACAAAAGCATGT 59.616 39.130 0.00 0.00 38.53 3.21
628 645 3.986442 AAAATGCGCTTGCCAATTTTT 57.014 33.333 9.73 0.00 33.08 1.94
639 656 6.151004 GCTTGCCAATTTTTATGCAAAACAT 58.849 32.000 0.00 0.00 42.55 2.71
664 681 1.689959 CAGTGCTTCATCGGCAAAAC 58.310 50.000 0.00 0.00 41.54 2.43
714 731 4.379082 GGAAACAATTATCGTTCGGCTTGT 60.379 41.667 0.00 0.00 0.00 3.16
720 737 5.622770 ATTATCGTTCGGCTTGTTTTTCT 57.377 34.783 0.00 0.00 0.00 2.52
791 812 7.149569 AGGTATCATTTGTGACAATGAACAG 57.850 36.000 0.00 0.00 38.71 3.16
883 928 3.628487 TGCACGTTACTGTAAAAGGCTTT 59.372 39.130 6.68 6.68 0.00 3.51
930 975 0.392193 GACGACTCAGGGTAGACCGA 60.392 60.000 0.00 0.00 46.96 4.69
988 1034 2.029844 GTCTCGCTCCCAGCACAAC 61.030 63.158 0.00 0.00 42.58 3.32
1130 1180 2.203788 TCCACAGGGCCTCTTCGT 60.204 61.111 0.95 0.00 0.00 3.85
1182 1232 2.354805 CCTCCCTTGTACACAGTAAGCC 60.355 54.545 0.00 0.00 0.00 4.35
1183 1233 2.301870 CTCCCTTGTACACAGTAAGCCA 59.698 50.000 0.00 0.00 0.00 4.75
1184 1234 2.038033 TCCCTTGTACACAGTAAGCCAC 59.962 50.000 0.00 0.00 0.00 5.01
1185 1235 2.066262 CCTTGTACACAGTAAGCCACG 58.934 52.381 0.00 0.00 0.00 4.94
1186 1236 2.066262 CTTGTACACAGTAAGCCACGG 58.934 52.381 0.00 0.00 0.00 4.94
1187 1237 0.320073 TGTACACAGTAAGCCACGGC 60.320 55.000 0.00 0.00 42.33 5.68
1230 1284 2.070039 CGATCCAGCCCCTTGGGTA 61.070 63.158 4.84 0.00 46.51 3.69
1268 1323 0.322456 TTTTCGGTGCCATCAGGGAG 60.322 55.000 0.00 0.00 40.01 4.30
1271 1328 2.659063 CGGTGCCATCAGGGAGTGA 61.659 63.158 0.00 0.00 40.01 3.41
1497 1554 1.403249 GGAAGTGCGTATACCGTGTGT 60.403 52.381 0.00 0.00 39.32 3.72
1501 1558 1.446445 GCGTATACCGTGTGTGCCA 60.446 57.895 0.00 0.00 39.32 4.92
1540 1597 7.818930 ACAAAAGAATGTCATGTTTCAGTTGTT 59.181 29.630 14.07 5.32 0.00 2.83
1613 1670 5.047306 AGGACAGATGTTGACGAGATTAACA 60.047 40.000 0.00 0.00 38.52 2.41
1914 1975 4.613944 TGTCTACTAACGTGTCCTTGTTG 58.386 43.478 0.00 0.00 0.00 3.33
1915 1976 4.338964 TGTCTACTAACGTGTCCTTGTTGA 59.661 41.667 0.00 0.00 0.00 3.18
1916 1977 4.916249 GTCTACTAACGTGTCCTTGTTGAG 59.084 45.833 0.00 0.00 0.00 3.02
1917 1978 3.814005 ACTAACGTGTCCTTGTTGAGT 57.186 42.857 0.00 0.00 0.00 3.41
1918 1979 4.924305 ACTAACGTGTCCTTGTTGAGTA 57.076 40.909 0.00 0.00 0.00 2.59
1919 1980 4.614946 ACTAACGTGTCCTTGTTGAGTAC 58.385 43.478 0.00 0.00 0.00 2.73
1920 1981 3.814005 AACGTGTCCTTGTTGAGTACT 57.186 42.857 0.00 0.00 0.00 2.73
1921 1982 3.366440 ACGTGTCCTTGTTGAGTACTC 57.634 47.619 16.32 16.32 0.00 2.59
1922 1983 2.035576 ACGTGTCCTTGTTGAGTACTCC 59.964 50.000 20.11 6.32 0.00 3.85
1923 1984 2.609737 CGTGTCCTTGTTGAGTACTCCC 60.610 54.545 20.11 11.07 0.00 4.30
1924 1985 2.633481 GTGTCCTTGTTGAGTACTCCCT 59.367 50.000 20.11 0.00 0.00 4.20
1925 1986 2.897969 TGTCCTTGTTGAGTACTCCCTC 59.102 50.000 20.11 10.56 0.00 4.30
1926 1987 2.234168 GTCCTTGTTGAGTACTCCCTCC 59.766 54.545 20.11 5.92 0.00 4.30
1927 1988 1.204941 CCTTGTTGAGTACTCCCTCCG 59.795 57.143 20.11 6.08 0.00 4.63
1928 1989 1.893801 CTTGTTGAGTACTCCCTCCGT 59.106 52.381 20.11 0.00 0.00 4.69
1929 1990 1.542492 TGTTGAGTACTCCCTCCGTC 58.458 55.000 20.11 3.81 0.00 4.79
1930 1991 0.816373 GTTGAGTACTCCCTCCGTCC 59.184 60.000 20.11 0.00 0.00 4.79
1931 1992 0.702902 TTGAGTACTCCCTCCGTCCT 59.297 55.000 20.11 0.00 0.00 3.85
1932 1993 1.588239 TGAGTACTCCCTCCGTCCTA 58.412 55.000 20.11 0.00 0.00 2.94
1933 1994 1.918262 TGAGTACTCCCTCCGTCCTAA 59.082 52.381 20.11 0.00 0.00 2.69
1934 1995 2.309755 TGAGTACTCCCTCCGTCCTAAA 59.690 50.000 20.11 0.00 0.00 1.85
1935 1996 3.245371 TGAGTACTCCCTCCGTCCTAAAA 60.245 47.826 20.11 0.00 0.00 1.52
1936 1997 3.959449 GAGTACTCCCTCCGTCCTAAAAT 59.041 47.826 12.13 0.00 0.00 1.82
1937 1998 5.134725 AGTACTCCCTCCGTCCTAAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1938 1999 4.892345 AGTACTCCCTCCGTCCTAAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
1939 2000 3.991683 ACTCCCTCCGTCCTAAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1940 2001 4.359996 ACTCCCTCCGTCCTAAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1941 2002 4.161754 ACTCCCTCCGTCCTAAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1942 2003 4.098894 TCCCTCCGTCCTAAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1943 2004 4.161001 TCCCTCCGTCCTAAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1944 2005 4.110482 CCTCCGTCCTAAAATACTTGTCG 58.890 47.826 0.00 0.00 0.00 4.35
1945 2006 4.142315 CCTCCGTCCTAAAATACTTGTCGA 60.142 45.833 0.00 0.00 0.00 4.20
1946 2007 5.389859 TCCGTCCTAAAATACTTGTCGAA 57.610 39.130 0.00 0.00 0.00 3.71
1947 2008 5.404946 TCCGTCCTAAAATACTTGTCGAAG 58.595 41.667 0.00 0.00 35.07 3.79
1948 2009 5.183713 TCCGTCCTAAAATACTTGTCGAAGA 59.816 40.000 0.00 0.00 32.98 2.87
1949 2010 5.865552 CCGTCCTAAAATACTTGTCGAAGAA 59.134 40.000 0.00 0.00 39.69 2.52
1950 2011 6.366877 CCGTCCTAAAATACTTGTCGAAGAAA 59.633 38.462 0.00 0.00 39.69 2.52
1951 2012 7.064253 CCGTCCTAAAATACTTGTCGAAGAAAT 59.936 37.037 0.00 0.00 39.69 2.17
1952 2013 7.898309 CGTCCTAAAATACTTGTCGAAGAAATG 59.102 37.037 0.00 0.00 39.69 2.32
1953 2014 8.175716 GTCCTAAAATACTTGTCGAAGAAATGG 58.824 37.037 0.00 0.00 39.69 3.16
1954 2015 8.098286 TCCTAAAATACTTGTCGAAGAAATGGA 58.902 33.333 0.00 0.00 39.69 3.41
1955 2016 8.893727 CCTAAAATACTTGTCGAAGAAATGGAT 58.106 33.333 0.00 0.00 39.69 3.41
1956 2017 9.708222 CTAAAATACTTGTCGAAGAAATGGATG 57.292 33.333 0.00 0.00 39.69 3.51
1957 2018 7.687941 AAATACTTGTCGAAGAAATGGATGT 57.312 32.000 0.00 0.00 39.69 3.06
1958 2019 8.786826 AAATACTTGTCGAAGAAATGGATGTA 57.213 30.769 0.00 0.00 39.69 2.29
1959 2020 7.772332 ATACTTGTCGAAGAAATGGATGTAC 57.228 36.000 0.00 0.00 39.69 2.90
1960 2021 4.935808 ACTTGTCGAAGAAATGGATGTACC 59.064 41.667 0.00 0.00 39.69 3.34
1961 2022 4.819105 TGTCGAAGAAATGGATGTACCT 57.181 40.909 0.00 0.00 39.69 3.08
1962 2023 5.925506 TGTCGAAGAAATGGATGTACCTA 57.074 39.130 0.00 0.00 39.69 3.08
1963 2024 5.902681 TGTCGAAGAAATGGATGTACCTAG 58.097 41.667 0.00 0.00 39.69 3.02
1964 2025 5.655090 TGTCGAAGAAATGGATGTACCTAGA 59.345 40.000 0.00 0.00 39.69 2.43
1965 2026 5.978322 GTCGAAGAAATGGATGTACCTAGAC 59.022 44.000 0.00 0.00 39.69 2.59
1966 2027 4.976731 CGAAGAAATGGATGTACCTAGACG 59.023 45.833 0.00 0.00 39.86 4.18
1967 2028 5.450137 CGAAGAAATGGATGTACCTAGACGT 60.450 44.000 0.00 0.00 39.86 4.34
1968 2029 6.238566 CGAAGAAATGGATGTACCTAGACGTA 60.239 42.308 0.00 0.00 39.86 3.57
1969 2030 7.521748 CGAAGAAATGGATGTACCTAGACGTAT 60.522 40.741 0.00 0.00 39.86 3.06
1970 2031 7.216973 AGAAATGGATGTACCTAGACGTATC 57.783 40.000 0.00 0.00 39.86 2.24
1971 2032 7.005296 AGAAATGGATGTACCTAGACGTATCT 58.995 38.462 0.00 0.00 39.86 1.98
1972 2033 7.506261 AGAAATGGATGTACCTAGACGTATCTT 59.494 37.037 0.00 0.00 39.86 2.40
1973 2034 8.701908 AAATGGATGTACCTAGACGTATCTTA 57.298 34.615 0.00 0.00 39.86 2.10
1974 2035 7.925043 ATGGATGTACCTAGACGTATCTTAG 57.075 40.000 0.00 0.00 39.86 2.18
1975 2036 6.835174 TGGATGTACCTAGACGTATCTTAGT 58.165 40.000 0.00 0.00 39.86 2.24
1976 2037 7.285566 TGGATGTACCTAGACGTATCTTAGTT 58.714 38.462 0.00 0.00 39.86 2.24
1977 2038 7.443575 TGGATGTACCTAGACGTATCTTAGTTC 59.556 40.741 0.00 0.00 39.86 3.01
1978 2039 7.661027 GGATGTACCTAGACGTATCTTAGTTCT 59.339 40.741 0.00 0.00 36.29 3.01
1979 2040 9.703892 GATGTACCTAGACGTATCTTAGTTCTA 57.296 37.037 0.00 0.00 36.29 2.10
1980 2041 9.709495 ATGTACCTAGACGTATCTTAGTTCTAG 57.291 37.037 0.00 0.00 36.29 2.43
1981 2042 8.918116 TGTACCTAGACGTATCTTAGTTCTAGA 58.082 37.037 5.67 0.00 36.29 2.43
1982 2043 9.927668 GTACCTAGACGTATCTTAGTTCTAGAT 57.072 37.037 0.00 0.00 36.29 1.98
1983 2044 8.836268 ACCTAGACGTATCTTAGTTCTAGATG 57.164 38.462 0.00 0.00 36.29 2.90
1984 2045 7.388500 ACCTAGACGTATCTTAGTTCTAGATGC 59.612 40.741 0.00 0.00 36.29 3.91
1985 2046 7.388224 CCTAGACGTATCTTAGTTCTAGATGCA 59.612 40.741 0.00 0.00 35.31 3.96
1986 2047 7.753309 AGACGTATCTTAGTTCTAGATGCAT 57.247 36.000 0.00 0.00 35.31 3.96
1987 2048 8.172352 AGACGTATCTTAGTTCTAGATGCATT 57.828 34.615 0.00 0.00 35.31 3.56
1988 2049 8.293867 AGACGTATCTTAGTTCTAGATGCATTC 58.706 37.037 0.00 0.00 35.31 2.67
1989 2050 7.941919 ACGTATCTTAGTTCTAGATGCATTCA 58.058 34.615 0.00 0.00 35.31 2.57
1990 2051 8.580720 ACGTATCTTAGTTCTAGATGCATTCAT 58.419 33.333 0.00 0.00 35.31 2.57
1991 2052 9.416794 CGTATCTTAGTTCTAGATGCATTCATT 57.583 33.333 0.00 0.00 35.31 2.57
1999 2060 9.412460 AGTTCTAGATGCATTCATTTTTATCCA 57.588 29.630 0.00 0.00 31.96 3.41
2004 2065 8.897872 AGATGCATTCATTTTTATCCATTTCC 57.102 30.769 0.00 0.00 31.96 3.13
2005 2066 7.935210 AGATGCATTCATTTTTATCCATTTCCC 59.065 33.333 0.00 0.00 31.96 3.97
2006 2067 6.355747 TGCATTCATTTTTATCCATTTCCCC 58.644 36.000 0.00 0.00 0.00 4.81
2007 2068 5.466393 GCATTCATTTTTATCCATTTCCCCG 59.534 40.000 0.00 0.00 0.00 5.73
2008 2069 6.685116 GCATTCATTTTTATCCATTTCCCCGA 60.685 38.462 0.00 0.00 0.00 5.14
2009 2070 5.845391 TCATTTTTATCCATTTCCCCGAC 57.155 39.130 0.00 0.00 0.00 4.79
2010 2071 5.265191 TCATTTTTATCCATTTCCCCGACA 58.735 37.500 0.00 0.00 0.00 4.35
2011 2072 5.717178 TCATTTTTATCCATTTCCCCGACAA 59.283 36.000 0.00 0.00 0.00 3.18
2012 2073 5.652994 TTTTTATCCATTTCCCCGACAAG 57.347 39.130 0.00 0.00 0.00 3.16
2013 2074 4.310022 TTTATCCATTTCCCCGACAAGT 57.690 40.909 0.00 0.00 0.00 3.16
2014 2075 5.438698 TTTATCCATTTCCCCGACAAGTA 57.561 39.130 0.00 0.00 0.00 2.24
2015 2076 5.640158 TTATCCATTTCCCCGACAAGTAT 57.360 39.130 0.00 0.00 0.00 2.12
2016 2077 4.519906 ATCCATTTCCCCGACAAGTATT 57.480 40.909 0.00 0.00 0.00 1.89
2017 2078 4.310022 TCCATTTCCCCGACAAGTATTT 57.690 40.909 0.00 0.00 0.00 1.40
2018 2079 4.266714 TCCATTTCCCCGACAAGTATTTC 58.733 43.478 0.00 0.00 0.00 2.17
2019 2080 3.064820 CCATTTCCCCGACAAGTATTTCG 59.935 47.826 0.00 0.00 34.93 3.46
2169 2231 6.122964 AGCTTTCATATCCTTTTGACCCTAC 58.877 40.000 0.00 0.00 0.00 3.18
2256 2319 8.421249 TTTGGCTCCTTATATATTCAAATGGG 57.579 34.615 0.00 0.00 0.00 4.00
2279 2342 0.102481 CATGCAGCATCAAGAAGGGC 59.898 55.000 4.38 0.00 0.00 5.19
2294 2357 2.747686 GGCGGTCCAAGTCCTTCA 59.252 61.111 0.00 0.00 0.00 3.02
2387 2450 5.669848 GCGTAACATCAAAAGAGCTTCAGAG 60.670 44.000 0.00 0.00 0.00 3.35
2488 2553 6.487668 TCAGGTTCATTTGGCAGTATGATATG 59.512 38.462 13.08 11.93 39.69 1.78
2493 2558 7.443259 TCATTTGGCAGTATGATATGTGATG 57.557 36.000 9.49 0.00 39.69 3.07
2508 2573 8.536175 TGATATGTGATGTTGGTAGAAAGTGTA 58.464 33.333 0.00 0.00 0.00 2.90
2511 2576 4.694037 GTGATGTTGGTAGAAAGTGTACCC 59.306 45.833 0.00 0.00 39.50 3.69
2540 2605 3.835478 TGGTTGGGGAAATGGATGTAA 57.165 42.857 0.00 0.00 0.00 2.41
2554 2619 3.009695 TGGATGTAAAACCCTACCACCTG 59.990 47.826 0.00 0.00 0.00 4.00
2555 2620 3.617284 GATGTAAAACCCTACCACCTGG 58.383 50.000 0.00 0.00 42.17 4.45
2566 2631 3.765968 CCACCTGGGTTTTAAGCCT 57.234 52.632 11.58 0.00 46.54 4.58
2567 2632 1.256812 CCACCTGGGTTTTAAGCCTG 58.743 55.000 11.58 10.62 46.54 4.85
2569 2634 2.316108 CACCTGGGTTTTAAGCCTGTT 58.684 47.619 11.58 0.00 46.54 3.16
2570 2635 2.296190 CACCTGGGTTTTAAGCCTGTTC 59.704 50.000 11.58 0.00 46.54 3.18
2572 2637 2.962421 CCTGGGTTTTAAGCCTGTTCAA 59.038 45.455 11.58 0.00 46.54 2.69
2573 2638 3.243737 CCTGGGTTTTAAGCCTGTTCAAC 60.244 47.826 11.58 0.00 46.54 3.18
2574 2639 2.696187 TGGGTTTTAAGCCTGTTCAACC 59.304 45.455 11.58 0.00 46.54 3.77
2575 2640 2.036733 GGGTTTTAAGCCTGTTCAACCC 59.963 50.000 5.03 5.03 45.02 4.11
2577 2642 3.491964 GGTTTTAAGCCTGTTCAACCCAC 60.492 47.826 0.00 0.00 0.00 4.61
2578 2643 1.989706 TTAAGCCTGTTCAACCCACC 58.010 50.000 0.00 0.00 0.00 4.61
2599 2799 9.290145 CCCACCTAGGTTTAAATCCTCATGGAT 62.290 44.444 13.15 0.00 45.21 3.41
2645 2845 1.939980 AGGGGTCACTCCTACAGTTC 58.060 55.000 0.00 0.00 30.26 3.01
2660 2860 8.617290 TCCTACAGTTCTCTTCCAAAATAAAC 57.383 34.615 0.00 0.00 0.00 2.01
2661 2861 8.215050 TCCTACAGTTCTCTTCCAAAATAAACA 58.785 33.333 0.00 0.00 0.00 2.83
2699 2899 8.771521 TGGTAGGCAATACTAGTTACAAGATA 57.228 34.615 0.00 0.00 34.56 1.98
2812 3012 2.215942 ATGGTTTTGGTGGAGTAGGC 57.784 50.000 0.00 0.00 0.00 3.93
2821 3021 0.179108 GTGGAGTAGGCATGGTCGTC 60.179 60.000 0.00 0.00 0.00 4.20
2903 3103 2.633967 TGTGGAGCAAAATTGGCTGATT 59.366 40.909 0.00 0.00 42.78 2.57
2965 3165 8.512138 GTGGTTAACATAAAAGTTACAGATGCT 58.488 33.333 8.10 0.00 33.96 3.79
2986 3186 4.498345 GCTGATAAGGACCAACTACTCTCG 60.498 50.000 0.00 0.00 0.00 4.04
3004 3204 1.526575 CGGTTGCTTTGGATGCTGGT 61.527 55.000 0.00 0.00 0.00 4.00
3007 3207 0.828762 TTGCTTTGGATGCTGGTGCT 60.829 50.000 0.00 0.00 40.48 4.40
3186 3386 6.835819 AGTTAGATACTGTCTGCTGTTGTA 57.164 37.500 0.00 0.00 37.83 2.41
3191 3391 6.159988 AGATACTGTCTGCTGTTGTAACTTC 58.840 40.000 0.00 0.00 35.31 3.01
3197 3397 5.700832 TGTCTGCTGTTGTAACTTCCATAAG 59.299 40.000 0.00 0.00 38.77 1.73
3204 3404 5.468746 TGTTGTAACTTCCATAAGACACTGC 59.531 40.000 0.00 0.00 36.50 4.40
3211 3411 4.420522 TCCATAAGACACTGCATGCATA 57.579 40.909 22.97 10.00 0.00 3.14
3241 3441 8.979574 AGAAGTTATGTTTAAAGTCAGAGAACG 58.020 33.333 0.00 0.00 0.00 3.95
3260 3460 2.146342 CGGCATGTGATATTCCTGGTC 58.854 52.381 0.00 0.00 0.00 4.02
3270 3470 7.010160 TGTGATATTCCTGGTCCTTTTCTTTT 58.990 34.615 0.00 0.00 0.00 2.27
3277 3477 6.669631 TCCTGGTCCTTTTCTTTTTAGTTCT 58.330 36.000 0.00 0.00 0.00 3.01
3292 3492 9.530129 CTTTTTAGTTCTCTACATTTAGCAACG 57.470 33.333 0.00 0.00 0.00 4.10
3296 3496 5.812642 AGTTCTCTACATTTAGCAACGGATG 59.187 40.000 0.00 0.00 0.00 3.51
3340 3541 6.488006 TGCTCTTACAATTGCTCTCTTTCTTT 59.512 34.615 5.05 0.00 0.00 2.52
3344 3545 7.933577 TCTTACAATTGCTCTCTTTCTTTCAGA 59.066 33.333 5.05 0.00 0.00 3.27
3410 3611 6.227298 CTATCAAAGCTACAAGAGGAAGGA 57.773 41.667 0.00 0.00 0.00 3.36
3431 3632 7.703058 AGGACTGAAATTTGAAACGGATAAT 57.297 32.000 0.00 0.00 0.00 1.28
3488 3689 9.203421 GAGGTATTTGGTTTTCCTTTTATTGTG 57.797 33.333 0.00 0.00 41.38 3.33
3496 3697 7.045416 GGTTTTCCTTTTATTGTGGTCAAGTT 58.955 34.615 0.00 0.00 35.55 2.66
3499 3700 6.783708 TCCTTTTATTGTGGTCAAGTTTGT 57.216 33.333 0.00 0.00 36.97 2.83
3519 3720 9.878599 AGTTTGTACGAGTTGAAAATTAATGAG 57.121 29.630 0.00 0.00 0.00 2.90
3548 3749 3.864789 ACCACATGTTCCTCTGAAACT 57.135 42.857 0.00 0.00 30.79 2.66
3550 3751 3.885297 ACCACATGTTCCTCTGAAACTTG 59.115 43.478 0.00 6.58 30.79 3.16
3561 3762 8.878769 GTTCCTCTGAAACTTGAATCTTCTATC 58.121 37.037 0.00 0.00 30.79 2.08
3618 3819 9.131791 AGTTGGATGGTTTATTTATGATGTACC 57.868 33.333 0.00 0.00 0.00 3.34
3619 3820 9.131791 GTTGGATGGTTTATTTATGATGTACCT 57.868 33.333 0.00 0.00 0.00 3.08
3632 3833 1.079127 GTACCTCGTGTGCTGCCAT 60.079 57.895 0.00 0.00 0.00 4.40
3639 3840 1.286880 GTGTGCTGCCATGTTCCAC 59.713 57.895 0.00 0.00 0.00 4.02
3640 3841 1.902918 TGTGCTGCCATGTTCCACC 60.903 57.895 0.00 0.00 0.00 4.61
3652 3853 4.648626 TCCACCTGGTGCAGCTGC 62.649 66.667 31.89 31.89 42.50 5.25
3654 3855 3.054503 CACCTGGTGCAGCTGCTC 61.055 66.667 36.61 32.35 42.66 4.26
3658 3859 2.203195 TGGTGCAGCTGCTCGTTT 60.203 55.556 36.61 0.00 42.66 3.60
3662 3863 0.110464 GTGCAGCTGCTCGTTTTCTC 60.110 55.000 36.61 13.22 42.66 2.87
3672 3873 5.390885 GCTGCTCGTTTTCTCATTGATGTTA 60.391 40.000 0.00 0.00 0.00 2.41
3676 3877 7.386573 TGCTCGTTTTCTCATTGATGTTAGTTA 59.613 33.333 0.00 0.00 0.00 2.24
3705 3935 7.661536 AAGTTAGGACTACTGCATCTTCATA 57.338 36.000 0.00 0.00 34.21 2.15
3740 3970 6.395426 TCATTGGCAGGATGTGATAAAATC 57.605 37.500 0.00 0.00 39.31 2.17
3785 4015 2.819422 TATCGTCCAGTCGAGTTTCG 57.181 50.000 0.00 0.00 43.00 3.46
3812 4042 5.353394 AGCATACCCGAGTGAGATAAAAA 57.647 39.130 0.00 0.00 0.00 1.94
3840 4070 6.041423 TGTCTGAAAGCAACTCATAGATCA 57.959 37.500 0.00 0.00 0.00 2.92
3851 4081 6.294010 GCAACTCATAGATCATTGCATCATGT 60.294 38.462 0.00 0.00 44.01 3.21
3891 4125 5.559427 TTGGATTGTCATGTATTCAACGG 57.441 39.130 0.00 0.00 0.00 4.44
3914 4231 6.534634 GGCTAAATAATTCCTAGGAGCTTCA 58.465 40.000 12.26 0.00 0.00 3.02
4098 4416 2.094675 GCTCTCTCAGCTCTCAAGACT 58.905 52.381 0.00 0.00 45.83 3.24
4133 4451 3.076182 TCCATTTGGGTAGGGCTTGTTTA 59.924 43.478 0.00 0.00 38.11 2.01
4137 4455 3.818295 TGGGTAGGGCTTGTTTACAAT 57.182 42.857 0.00 0.00 35.02 2.71
4152 4470 9.405587 CTTGTTTACAATTTCGTGTCCATTAAT 57.594 29.630 0.00 0.00 35.02 1.40
4175 4493 6.882610 TGATTTCTTATCAGCACTGTTTGT 57.117 33.333 0.00 0.00 0.00 2.83
4185 4503 2.611974 CACTGTTTGTGCCGATTACC 57.388 50.000 0.00 0.00 40.06 2.85
4198 4516 1.826385 GATTACCAAGCCTGCACACT 58.174 50.000 0.00 0.00 0.00 3.55
4200 4518 1.317613 TTACCAAGCCTGCACACTTG 58.682 50.000 14.40 14.40 42.35 3.16
4203 4521 0.031178 CCAAGCCTGCACACTTGAAC 59.969 55.000 20.47 0.00 44.89 3.18
4217 4535 4.454847 ACACTTGAACATCATCAGCTTCAG 59.545 41.667 0.00 0.00 0.00 3.02
4218 4536 4.454847 CACTTGAACATCATCAGCTTCAGT 59.545 41.667 0.00 0.00 0.00 3.41
4245 4563 5.521735 TCCAAAATGAAAATTGGTGAACACG 59.478 36.000 4.62 0.00 45.12 4.49
4246 4564 5.293079 CCAAAATGAAAATTGGTGAACACGT 59.707 36.000 0.00 0.00 40.96 4.49
4249 4567 4.909696 TGAAAATTGGTGAACACGTCAT 57.090 36.364 0.00 0.00 38.90 3.06
4257 4575 3.314080 TGGTGAACACGTCATTTTCCTTC 59.686 43.478 0.00 0.00 38.90 3.46
4285 4603 1.228706 TTTTCCCCGCATTCTGCCA 60.229 52.632 0.00 0.00 41.12 4.92
4298 4616 4.316645 CATTCTGCCATCTCATACTCAGG 58.683 47.826 0.00 0.00 0.00 3.86
4311 4630 6.155737 TCTCATACTCAGGGTTTTACCTTACC 59.844 42.308 0.00 0.00 39.34 2.85
4316 4635 4.732065 TCAGGGTTTTACCTTACCTTTGG 58.268 43.478 0.00 0.00 39.34 3.28
4324 4643 2.141067 ACCTTACCTTTGGTGTCCCTT 58.859 47.619 0.00 0.00 36.19 3.95
4325 4644 3.329277 ACCTTACCTTTGGTGTCCCTTA 58.671 45.455 0.00 0.00 36.19 2.69
4328 4647 5.552766 ACCTTACCTTTGGTGTCCCTTAATA 59.447 40.000 0.00 0.00 36.19 0.98
4344 4663 5.529060 CCCTTAATATCTTCACCTTGTCAGC 59.471 44.000 0.00 0.00 0.00 4.26
4356 4675 1.000827 CTTGTCAGCGTCTCAGTGAGT 60.001 52.381 19.53 0.00 0.00 3.41
4364 4683 2.730715 GCGTCTCAGTGAGTTGCTAGAG 60.731 54.545 23.22 9.44 31.89 2.43
4372 4691 0.527385 GAGTTGCTAGAGGCTGCTCG 60.527 60.000 0.00 0.00 42.39 5.03
4377 4696 2.796557 TGCTAGAGGCTGCTCGTATAT 58.203 47.619 0.00 0.00 42.39 0.86
4394 4713 4.430703 CGTATATCGAATGTTGTAACCGCG 60.431 45.833 0.00 0.00 42.86 6.46
4401 4720 4.376210 CGAATGTTGTAACCGCGTCTTTTA 60.376 41.667 4.92 0.00 0.00 1.52
4446 4765 2.717639 AACTGACCTATGCATGGACC 57.282 50.000 12.26 3.31 0.00 4.46
4460 4782 0.112412 TGGACCTTGGAGGCCTTTTC 59.888 55.000 6.77 0.00 39.63 2.29
4462 4784 0.612174 GACCTTGGAGGCCTTTTCCC 60.612 60.000 6.77 3.40 39.63 3.97
4463 4785 1.305297 CCTTGGAGGCCTTTTCCCC 60.305 63.158 6.77 2.93 33.62 4.81
4486 4808 5.527214 CCCCTATATATTGTGTGTGTGTGTG 59.473 44.000 0.00 0.00 0.00 3.82
4487 4809 6.112734 CCCTATATATTGTGTGTGTGTGTGT 58.887 40.000 0.00 0.00 0.00 3.72
4492 4814 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4493 4815 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
4494 4816 0.886490 TGTGTGTGTGTGTGTGTGCA 60.886 50.000 0.00 0.00 0.00 4.57
4495 4817 0.451383 GTGTGTGTGTGTGTGTGCAT 59.549 50.000 0.00 0.00 0.00 3.96
4496 4818 1.135431 GTGTGTGTGTGTGTGTGCATT 60.135 47.619 0.00 0.00 0.00 3.56
4497 4819 1.135460 TGTGTGTGTGTGTGTGCATTG 60.135 47.619 0.00 0.00 0.00 2.82
4498 4820 0.455005 TGTGTGTGTGTGTGCATTGG 59.545 50.000 0.00 0.00 0.00 3.16
4499 4821 0.455410 GTGTGTGTGTGTGCATTGGT 59.545 50.000 0.00 0.00 0.00 3.67
4500 4822 0.455005 TGTGTGTGTGTGCATTGGTG 59.545 50.000 0.00 0.00 0.00 4.17
4501 4823 0.455410 GTGTGTGTGTGCATTGGTGT 59.545 50.000 0.00 0.00 0.00 4.16
4502 4824 1.673400 GTGTGTGTGTGCATTGGTGTA 59.327 47.619 0.00 0.00 0.00 2.90
4503 4825 2.098280 GTGTGTGTGTGCATTGGTGTAA 59.902 45.455 0.00 0.00 0.00 2.41
4504 4826 2.954989 TGTGTGTGTGCATTGGTGTAAT 59.045 40.909 0.00 0.00 0.00 1.89
4505 4827 3.004210 TGTGTGTGTGCATTGGTGTAATC 59.996 43.478 0.00 0.00 0.00 1.75
4506 4828 3.253188 GTGTGTGTGCATTGGTGTAATCT 59.747 43.478 0.00 0.00 0.00 2.40
4521 4843 4.023279 GTGTAATCTTGGTTGTGTGCATCA 60.023 41.667 0.00 0.00 0.00 3.07
4524 4846 4.970662 ATCTTGGTTGTGTGCATCATAC 57.029 40.909 0.00 0.00 0.00 2.39
4582 4939 4.717233 ATTGCCTTTGTTGCATTATCGA 57.283 36.364 0.00 0.00 38.76 3.59
4592 4949 6.926280 TGTTGCATTATCGATCAACAAAAC 57.074 33.333 21.43 12.73 43.71 2.43
4625 4982 3.181493 CCAAAAGATGCATGTGTAGCTCC 60.181 47.826 2.46 0.00 0.00 4.70
4626 4983 2.338577 AAGATGCATGTGTAGCTCCC 57.661 50.000 2.46 0.00 0.00 4.30
4733 5104 8.936864 AGTCTAGAACAACACATAAATACAAGC 58.063 33.333 0.00 0.00 0.00 4.01
4734 5105 8.717821 GTCTAGAACAACACATAAATACAAGCA 58.282 33.333 0.00 0.00 0.00 3.91
4743 5114 7.996385 ACACATAAATACAAGCAAGTAATCCC 58.004 34.615 0.00 0.00 0.00 3.85
4744 5115 7.068226 ACACATAAATACAAGCAAGTAATCCCC 59.932 37.037 0.00 0.00 0.00 4.81
4747 5118 8.641541 CATAAATACAAGCAAGTAATCCCCATT 58.358 33.333 0.00 0.00 0.00 3.16
4798 5169 7.826690 TCTAGCTATAATGATTATGCACGTGA 58.173 34.615 22.23 4.80 0.00 4.35
4851 5222 6.888632 ACCTTGCAGACATCAATATTTCTTCT 59.111 34.615 0.00 0.00 0.00 2.85
4860 5231 8.985315 ACATCAATATTTCTTCTTCCATGCTA 57.015 30.769 0.00 0.00 0.00 3.49
4878 5249 5.224821 TGCTATATCTTCTGCTGCATTCT 57.775 39.130 1.31 0.00 0.00 2.40
4893 5264 0.890683 ATTCTGGCGGGCTTTTTCTG 59.109 50.000 2.38 0.00 0.00 3.02
4894 5265 1.805428 TTCTGGCGGGCTTTTTCTGC 61.805 55.000 2.38 0.00 35.88 4.26
4904 5275 4.058721 GGCTTTTTCTGCCTTCTTTCAA 57.941 40.909 0.00 0.00 46.38 2.69
4927 5298 6.233430 ACGAGCAATTCATCATAGTAATGC 57.767 37.500 0.00 0.00 32.76 3.56
4938 5309 9.716531 TTCATCATAGTAATGCCATTCTCTAAG 57.283 33.333 0.00 0.00 32.76 2.18
4956 5327 7.735917 TCTCTAAGATTTTCTCAACTTCCACA 58.264 34.615 0.00 0.00 0.00 4.17
4967 5338 5.598005 TCTCAACTTCCACATTGTTTTGGAT 59.402 36.000 0.00 0.00 41.65 3.41
5147 5518 3.250744 CCAACATTTGATCAGCAAGCAG 58.749 45.455 0.00 0.00 37.87 4.24
5160 5531 2.746269 GCAAGCAGCTTGACAAAATGA 58.254 42.857 34.93 0.00 43.42 2.57
5225 5596 4.537135 TCTTCCTTGTTAGCAGTTCGAT 57.463 40.909 0.00 0.00 0.00 3.59
5238 5609 2.600420 CAGTTCGATGAGAATGACACCG 59.400 50.000 0.00 0.00 41.49 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 0.264657 TGGATTCGAGATGGGAGGGA 59.735 55.000 0.00 0.00 0.00 4.20
59 61 0.391661 GCTTCACTGGCTGGATTCGA 60.392 55.000 0.00 0.00 0.00 3.71
137 145 2.859165 TTCCGCCTCTTTCATGTTCT 57.141 45.000 0.00 0.00 0.00 3.01
151 159 1.059264 CTCGACGTTTCTCATTTCCGC 59.941 52.381 0.00 0.00 0.00 5.54
153 161 4.232221 TGTACTCGACGTTTCTCATTTCC 58.768 43.478 0.00 0.00 0.00 3.13
167 175 3.004862 TCTGCGTCTATGTTGTACTCGA 58.995 45.455 0.00 0.00 0.00 4.04
169 177 4.092771 TGTCTGCGTCTATGTTGTACTC 57.907 45.455 0.00 0.00 0.00 2.59
187 195 1.336755 GTGGTGGTGTGGATGTTTGTC 59.663 52.381 0.00 0.00 0.00 3.18
270 278 9.967346 CTAGGATCATCTCAAAATCTTACGTTA 57.033 33.333 0.00 0.00 0.00 3.18
409 417 6.061441 TGTCCAAGAAGCTAGTGATTTTTCA 58.939 36.000 0.00 0.00 0.00 2.69
521 534 8.565896 TTCTAATTTACTGATCACAACATGCT 57.434 30.769 0.00 0.00 0.00 3.79
522 535 9.065871 GTTTCTAATTTACTGATCACAACATGC 57.934 33.333 0.00 0.00 0.00 4.06
609 625 4.672283 GCATAAAAATTGGCAAGCGCATTT 60.672 37.500 11.47 2.29 41.24 2.32
614 630 4.401525 TTTGCATAAAAATTGGCAAGCG 57.598 36.364 5.96 0.00 45.74 4.68
628 645 4.641541 AGCACTGCTATCATGTTTTGCATA 59.358 37.500 0.21 0.00 36.99 3.14
639 656 1.807755 GCCGATGAAGCACTGCTATCA 60.808 52.381 3.33 10.54 38.25 2.15
812 855 2.294791 AGGAGTATATGCTCTGCACGTC 59.705 50.000 18.72 2.47 43.04 4.34
813 856 2.035193 CAGGAGTATATGCTCTGCACGT 59.965 50.000 18.72 0.00 43.04 4.49
814 857 2.670479 CAGGAGTATATGCTCTGCACG 58.330 52.381 18.72 2.04 43.04 5.34
815 858 2.411904 GCAGGAGTATATGCTCTGCAC 58.588 52.381 25.44 11.35 43.04 4.57
816 859 1.000171 CGCAGGAGTATATGCTCTGCA 60.000 52.381 27.44 0.00 44.86 4.41
817 860 1.270826 TCGCAGGAGTATATGCTCTGC 59.729 52.381 22.89 22.89 40.34 4.26
818 861 2.670789 GCTCGCAGGAGTATATGCTCTG 60.671 54.545 18.72 15.20 42.53 3.35
819 862 1.543802 GCTCGCAGGAGTATATGCTCT 59.456 52.381 18.72 4.28 42.53 4.09
930 975 1.072331 AGGCACGGTTCAGATTTGTCT 59.928 47.619 0.00 0.00 0.00 3.41
1186 1236 4.459089 GAGCAGAGGGTCGGTGGC 62.459 72.222 0.00 0.00 0.00 5.01
1187 1237 3.775654 GGAGCAGAGGGTCGGTGG 61.776 72.222 0.00 0.00 42.46 4.61
1444 1501 4.402155 AGAGACAACCAAAATTTGCACAGA 59.598 37.500 0.00 0.00 0.00 3.41
1613 1670 3.322828 AGCAAGCATCAAATGTTGTTCCT 59.677 39.130 0.00 0.00 0.00 3.36
1676 1737 6.751514 TGCATTAAGAGGCGAAAGATAAAA 57.248 33.333 0.00 0.00 34.74 1.52
1677 1738 6.942532 ATGCATTAAGAGGCGAAAGATAAA 57.057 33.333 0.00 0.00 34.74 1.40
1903 1964 2.633481 AGGGAGTACTCAACAAGGACAC 59.367 50.000 23.91 2.81 41.87 3.67
1914 1975 2.725221 TTAGGACGGAGGGAGTACTC 57.275 55.000 14.87 14.87 34.13 2.59
1915 1976 3.463048 TTTTAGGACGGAGGGAGTACT 57.537 47.619 0.00 0.00 36.60 2.73
1916 1977 4.892345 AGTATTTTAGGACGGAGGGAGTAC 59.108 45.833 0.00 0.00 0.00 2.73
1917 1978 5.134725 AGTATTTTAGGACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
1918 1979 3.991683 AGTATTTTAGGACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
1919 1980 4.161754 ACAAGTATTTTAGGACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1920 1981 4.098894 ACAAGTATTTTAGGACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1921 1982 4.439968 GACAAGTATTTTAGGACGGAGGG 58.560 47.826 0.00 0.00 0.00 4.30
1922 1983 4.110482 CGACAAGTATTTTAGGACGGAGG 58.890 47.826 0.00 0.00 0.00 4.30
1923 1984 4.990257 TCGACAAGTATTTTAGGACGGAG 58.010 43.478 0.00 0.00 0.00 4.63
1924 1985 5.183713 TCTTCGACAAGTATTTTAGGACGGA 59.816 40.000 0.00 0.00 0.00 4.69
1925 1986 5.404946 TCTTCGACAAGTATTTTAGGACGG 58.595 41.667 0.00 0.00 0.00 4.79
1926 1987 6.939551 TTCTTCGACAAGTATTTTAGGACG 57.060 37.500 0.00 0.00 0.00 4.79
1927 1988 8.175716 CCATTTCTTCGACAAGTATTTTAGGAC 58.824 37.037 0.00 0.00 0.00 3.85
1928 1989 8.098286 TCCATTTCTTCGACAAGTATTTTAGGA 58.902 33.333 0.00 0.00 0.00 2.94
1929 1990 8.263940 TCCATTTCTTCGACAAGTATTTTAGG 57.736 34.615 0.00 0.00 0.00 2.69
1930 1991 9.708222 CATCCATTTCTTCGACAAGTATTTTAG 57.292 33.333 0.00 0.00 0.00 1.85
1931 1992 9.226606 ACATCCATTTCTTCGACAAGTATTTTA 57.773 29.630 0.00 0.00 0.00 1.52
1932 1993 8.110860 ACATCCATTTCTTCGACAAGTATTTT 57.889 30.769 0.00 0.00 0.00 1.82
1933 1994 7.687941 ACATCCATTTCTTCGACAAGTATTT 57.312 32.000 0.00 0.00 0.00 1.40
1934 1995 7.280205 GGTACATCCATTTCTTCGACAAGTATT 59.720 37.037 0.00 0.00 35.97 1.89
1935 1996 6.761714 GGTACATCCATTTCTTCGACAAGTAT 59.238 38.462 0.00 0.00 35.97 2.12
1936 1997 6.070995 AGGTACATCCATTTCTTCGACAAGTA 60.071 38.462 0.00 0.00 39.02 2.24
1937 1998 4.935808 GGTACATCCATTTCTTCGACAAGT 59.064 41.667 0.00 0.00 35.97 3.16
1938 1999 5.178797 AGGTACATCCATTTCTTCGACAAG 58.821 41.667 0.00 0.00 39.02 3.16
1939 2000 5.160607 AGGTACATCCATTTCTTCGACAA 57.839 39.130 0.00 0.00 39.02 3.18
1940 2001 4.819105 AGGTACATCCATTTCTTCGACA 57.181 40.909 0.00 0.00 39.02 4.35
1941 2002 5.978322 GTCTAGGTACATCCATTTCTTCGAC 59.022 44.000 0.00 0.00 39.02 4.20
1942 2003 5.220989 CGTCTAGGTACATCCATTTCTTCGA 60.221 44.000 0.00 0.00 39.02 3.71
1943 2004 4.976731 CGTCTAGGTACATCCATTTCTTCG 59.023 45.833 0.00 0.00 39.02 3.79
1944 2005 5.903810 ACGTCTAGGTACATCCATTTCTTC 58.096 41.667 0.00 0.00 39.02 2.87
1945 2006 5.934402 ACGTCTAGGTACATCCATTTCTT 57.066 39.130 0.00 0.00 39.02 2.52
1946 2007 7.005296 AGATACGTCTAGGTACATCCATTTCT 58.995 38.462 0.00 0.00 39.02 2.52
1947 2008 7.216973 AGATACGTCTAGGTACATCCATTTC 57.783 40.000 0.00 0.00 39.02 2.17
1948 2009 7.598759 AAGATACGTCTAGGTACATCCATTT 57.401 36.000 0.00 0.00 34.07 2.32
1949 2010 7.943447 ACTAAGATACGTCTAGGTACATCCATT 59.057 37.037 0.00 0.00 34.07 3.16
1950 2011 7.460071 ACTAAGATACGTCTAGGTACATCCAT 58.540 38.462 0.00 0.00 34.07 3.41
1951 2012 6.835174 ACTAAGATACGTCTAGGTACATCCA 58.165 40.000 0.00 0.00 34.07 3.41
1952 2013 7.661027 AGAACTAAGATACGTCTAGGTACATCC 59.339 40.741 0.00 0.00 33.30 3.51
1953 2014 8.606040 AGAACTAAGATACGTCTAGGTACATC 57.394 38.462 0.00 0.00 33.30 3.06
1954 2015 9.709495 CTAGAACTAAGATACGTCTAGGTACAT 57.291 37.037 0.00 0.00 33.30 2.29
1955 2016 8.918116 TCTAGAACTAAGATACGTCTAGGTACA 58.082 37.037 0.00 0.00 33.30 2.90
1956 2017 9.927668 ATCTAGAACTAAGATACGTCTAGGTAC 57.072 37.037 0.00 0.00 33.30 3.34
1957 2018 9.926158 CATCTAGAACTAAGATACGTCTAGGTA 57.074 37.037 0.00 0.00 33.30 3.08
1958 2019 7.388500 GCATCTAGAACTAAGATACGTCTAGGT 59.612 40.741 0.00 0.00 33.30 3.08
1959 2020 7.388224 TGCATCTAGAACTAAGATACGTCTAGG 59.612 40.741 0.00 0.00 33.30 3.02
1960 2021 8.312896 TGCATCTAGAACTAAGATACGTCTAG 57.687 38.462 0.00 0.00 33.30 2.43
1961 2022 8.850007 ATGCATCTAGAACTAAGATACGTCTA 57.150 34.615 0.00 0.00 33.30 2.59
1962 2023 7.753309 ATGCATCTAGAACTAAGATACGTCT 57.247 36.000 0.00 0.00 35.82 4.18
1963 2024 8.076781 TGAATGCATCTAGAACTAAGATACGTC 58.923 37.037 0.00 0.00 0.00 4.34
1964 2025 7.941919 TGAATGCATCTAGAACTAAGATACGT 58.058 34.615 0.00 0.00 0.00 3.57
1965 2026 8.978564 ATGAATGCATCTAGAACTAAGATACG 57.021 34.615 0.00 0.00 0.00 3.06
1973 2034 9.412460 TGGATAAAAATGAATGCATCTAGAACT 57.588 29.630 0.00 0.00 32.35 3.01
1978 2039 9.985730 GGAAATGGATAAAAATGAATGCATCTA 57.014 29.630 0.00 0.00 33.60 1.98
1979 2040 7.935210 GGGAAATGGATAAAAATGAATGCATCT 59.065 33.333 0.00 0.00 33.60 2.90
1980 2041 7.173735 GGGGAAATGGATAAAAATGAATGCATC 59.826 37.037 0.00 0.00 33.60 3.91
1981 2042 6.999871 GGGGAAATGGATAAAAATGAATGCAT 59.000 34.615 0.00 0.00 35.91 3.96
1982 2043 6.355747 GGGGAAATGGATAAAAATGAATGCA 58.644 36.000 0.00 0.00 0.00 3.96
1983 2044 5.466393 CGGGGAAATGGATAAAAATGAATGC 59.534 40.000 0.00 0.00 0.00 3.56
1984 2045 6.701400 GTCGGGGAAATGGATAAAAATGAATG 59.299 38.462 0.00 0.00 0.00 2.67
1985 2046 6.382570 TGTCGGGGAAATGGATAAAAATGAAT 59.617 34.615 0.00 0.00 0.00 2.57
1986 2047 5.717178 TGTCGGGGAAATGGATAAAAATGAA 59.283 36.000 0.00 0.00 0.00 2.57
1987 2048 5.265191 TGTCGGGGAAATGGATAAAAATGA 58.735 37.500 0.00 0.00 0.00 2.57
1988 2049 5.590530 TGTCGGGGAAATGGATAAAAATG 57.409 39.130 0.00 0.00 0.00 2.32
1989 2050 5.719563 ACTTGTCGGGGAAATGGATAAAAAT 59.280 36.000 0.00 0.00 0.00 1.82
1990 2051 5.081032 ACTTGTCGGGGAAATGGATAAAAA 58.919 37.500 0.00 0.00 0.00 1.94
1991 2052 4.668636 ACTTGTCGGGGAAATGGATAAAA 58.331 39.130 0.00 0.00 0.00 1.52
1992 2053 4.310022 ACTTGTCGGGGAAATGGATAAA 57.690 40.909 0.00 0.00 0.00 1.40
1993 2054 5.640158 ATACTTGTCGGGGAAATGGATAA 57.360 39.130 0.00 0.00 0.00 1.75
1994 2055 5.640158 AATACTTGTCGGGGAAATGGATA 57.360 39.130 0.00 0.00 0.00 2.59
1995 2056 4.519906 AATACTTGTCGGGGAAATGGAT 57.480 40.909 0.00 0.00 0.00 3.41
1996 2057 4.266714 GAAATACTTGTCGGGGAAATGGA 58.733 43.478 0.00 0.00 0.00 3.41
1997 2058 3.064820 CGAAATACTTGTCGGGGAAATGG 59.935 47.826 0.00 0.00 33.62 3.16
1998 2059 4.273005 CGAAATACTTGTCGGGGAAATG 57.727 45.455 0.00 0.00 33.62 2.32
2006 2067 1.135315 TCCGTCCCGAAATACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
2007 2068 2.537401 CTCCGTCCCGAAATACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
2008 2069 1.206371 CCTCCGTCCCGAAATACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
2009 2070 1.472728 CCCTCCGTCCCGAAATACTTG 60.473 57.143 0.00 0.00 0.00 3.16
2010 2071 0.828677 CCCTCCGTCCCGAAATACTT 59.171 55.000 0.00 0.00 0.00 2.24
2011 2072 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.000 0.00 0.00 0.00 2.12
2012 2073 0.388294 CTCCCTCCGTCCCGAAATAC 59.612 60.000 0.00 0.00 0.00 1.89
2013 2074 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
2014 2075 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
2015 2076 0.682209 CTACTCCCTCCGTCCCGAAA 60.682 60.000 0.00 0.00 0.00 3.46
2016 2077 1.077212 CTACTCCCTCCGTCCCGAA 60.077 63.158 0.00 0.00 0.00 4.30
2017 2078 2.593978 CTACTCCCTCCGTCCCGA 59.406 66.667 0.00 0.00 0.00 5.14
2018 2079 3.217743 GCTACTCCCTCCGTCCCG 61.218 72.222 0.00 0.00 0.00 5.14
2019 2080 0.178970 TATGCTACTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
2020 2081 1.700955 TTATGCTACTCCCTCCGTCC 58.299 55.000 0.00 0.00 0.00 4.79
2021 2082 2.628657 ACATTATGCTACTCCCTCCGTC 59.371 50.000 0.00 0.00 0.00 4.79
2022 2083 2.365617 CACATTATGCTACTCCCTCCGT 59.634 50.000 0.00 0.00 0.00 4.69
2023 2084 2.365617 ACACATTATGCTACTCCCTCCG 59.634 50.000 0.00 0.00 0.00 4.63
2024 2085 4.423625 AACACATTATGCTACTCCCTCC 57.576 45.455 0.00 0.00 0.00 4.30
2025 2086 7.859325 TTAAAACACATTATGCTACTCCCTC 57.141 36.000 0.00 0.00 0.00 4.30
2026 2087 8.686334 CAATTAAAACACATTATGCTACTCCCT 58.314 33.333 0.00 0.00 0.00 4.20
2027 2088 8.466798 ACAATTAAAACACATTATGCTACTCCC 58.533 33.333 0.00 0.00 0.00 4.30
2028 2089 9.289303 CACAATTAAAACACATTATGCTACTCC 57.711 33.333 0.00 0.00 0.00 3.85
2126 2188 5.862678 AGCTCATCTTTAAGGGACTAGTC 57.137 43.478 14.87 14.87 38.49 2.59
2178 2241 6.765512 TCTTGTCATGCCATTTCGAATATACA 59.234 34.615 0.00 0.00 0.00 2.29
2251 2314 3.232720 TGATGCTGCATGATACCCATT 57.767 42.857 21.53 0.00 31.94 3.16
2256 2319 3.252701 CCCTTCTTGATGCTGCATGATAC 59.747 47.826 21.53 5.96 0.00 2.24
2279 2342 0.613260 TGGATGAAGGACTTGGACCG 59.387 55.000 0.00 0.00 0.00 4.79
2316 2379 8.500753 TCAAGCTCTCTTACTTTCTCTAGTAG 57.499 38.462 0.00 0.00 32.54 2.57
2387 2450 4.710375 TCTGTGTAAGTATCCTGACCCTTC 59.290 45.833 0.00 0.00 0.00 3.46
2432 2495 8.012957 AGGTCCACATTAAACTAGTGATAGAG 57.987 38.462 0.00 0.00 35.33 2.43
2488 2553 4.694037 GGGTACACTTTCTACCAACATCAC 59.306 45.833 0.00 0.00 36.14 3.06
2493 2558 5.161943 AGATGGGTACACTTTCTACCAAC 57.838 43.478 0.00 0.00 36.14 3.77
2508 2573 2.236489 CCCAACCAAATGAGATGGGT 57.764 50.000 0.90 0.00 44.67 4.51
2511 2576 4.383335 CCATTTCCCCAACCAAATGAGATG 60.383 45.833 6.05 0.00 40.89 2.90
2554 2619 3.380479 GGTTGAACAGGCTTAAAACCC 57.620 47.619 0.00 0.00 32.64 4.11
2555 2620 2.696187 TGGGTTGAACAGGCTTAAAACC 59.304 45.455 0.00 8.82 37.03 3.27
2556 2621 3.491964 GGTGGGTTGAACAGGCTTAAAAC 60.492 47.826 0.00 0.00 0.00 2.43
2557 2622 2.696187 GGTGGGTTGAACAGGCTTAAAA 59.304 45.455 0.00 0.00 0.00 1.52
2558 2623 2.091555 AGGTGGGTTGAACAGGCTTAAA 60.092 45.455 0.00 0.00 0.00 1.52
2559 2624 1.497286 AGGTGGGTTGAACAGGCTTAA 59.503 47.619 0.00 0.00 0.00 1.85
2561 2626 1.073923 CTAGGTGGGTTGAACAGGCTT 59.926 52.381 0.00 0.00 0.00 4.35
2562 2627 0.693049 CTAGGTGGGTTGAACAGGCT 59.307 55.000 0.00 0.00 0.00 4.58
2564 2629 1.064825 ACCTAGGTGGGTTGAACAGG 58.935 55.000 15.42 0.00 41.11 4.00
2565 2630 2.951229 AACCTAGGTGGGTTGAACAG 57.049 50.000 17.14 0.00 46.51 3.16
2572 2637 4.180723 TGAGGATTTAAACCTAGGTGGGT 58.819 43.478 17.14 6.72 42.05 4.51
2573 2638 4.855298 TGAGGATTTAAACCTAGGTGGG 57.145 45.455 17.14 0.00 41.11 4.61
2574 2639 5.104109 TCCATGAGGATTTAAACCTAGGTGG 60.104 44.000 17.14 7.54 39.61 4.61
2575 2640 6.001449 TCCATGAGGATTTAAACCTAGGTG 57.999 41.667 17.14 0.00 39.61 4.00
2699 2899 5.880901 ACTCCTGAACACAATTTACCTCAT 58.119 37.500 0.00 0.00 0.00 2.90
2748 2948 5.009610 GGCACTTGGAAACTTTCACAAGATA 59.990 40.000 24.66 2.94 38.82 1.98
2764 2964 3.731652 TGAAATGTTTCAGGCACTTGG 57.268 42.857 4.16 0.00 41.88 3.61
2765 2965 4.431809 TGTTGAAATGTTTCAGGCACTTG 58.568 39.130 8.07 0.00 46.68 3.16
2812 3012 1.100510 TAAGGACCTCGACGACCATG 58.899 55.000 0.00 0.00 0.00 3.66
2821 3021 5.929992 TGTAATTTTGTCTGTAAGGACCTCG 59.070 40.000 0.00 0.00 35.54 4.63
2903 3103 5.248248 TGAATCTGAATGTAACAGACCCAGA 59.752 40.000 0.00 0.00 45.19 3.86
2965 3165 3.952323 CCGAGAGTAGTTGGTCCTTATCA 59.048 47.826 0.00 0.00 0.00 2.15
2986 3186 0.037975 CACCAGCATCCAAAGCAACC 60.038 55.000 0.00 0.00 0.00 3.77
3004 3204 6.587206 TTTGGTTCAATAACATCATCAGCA 57.413 33.333 0.00 0.00 37.34 4.41
3007 3207 9.993454 TCAAAATTTGGTTCAATAACATCATCA 57.007 25.926 5.83 0.00 37.34 3.07
3100 3300 1.064825 AAATCCACTGGGTCGGAGTT 58.935 50.000 0.00 0.00 34.88 3.01
3101 3301 0.324943 CAAATCCACTGGGTCGGAGT 59.675 55.000 0.00 0.00 33.97 3.85
3103 3303 1.209504 GATCAAATCCACTGGGTCGGA 59.790 52.381 0.00 0.00 35.27 4.55
3186 3386 3.441572 GCATGCAGTGTCTTATGGAAGTT 59.558 43.478 14.21 0.00 34.03 2.66
3191 3391 3.878699 TGTATGCATGCAGTGTCTTATGG 59.121 43.478 26.69 0.00 0.00 2.74
3197 3397 2.897436 TCTCTGTATGCATGCAGTGTC 58.103 47.619 34.41 15.34 40.72 3.67
3211 3411 9.482627 CTCTGACTTTAAACATAACTTCTCTGT 57.517 33.333 0.00 0.00 0.00 3.41
3230 3430 0.969149 TCACATGCCGTTCTCTGACT 59.031 50.000 0.00 0.00 0.00 3.41
3239 3439 1.490490 ACCAGGAATATCACATGCCGT 59.510 47.619 0.00 0.00 0.00 5.68
3241 3441 2.107204 AGGACCAGGAATATCACATGCC 59.893 50.000 0.00 0.00 0.00 4.40
3270 3470 6.927416 TCCGTTGCTAAATGTAGAGAACTAA 58.073 36.000 0.00 0.00 0.00 2.24
3277 3477 5.127194 AGAGACATCCGTTGCTAAATGTAGA 59.873 40.000 0.00 0.00 32.70 2.59
3289 3489 1.895798 TGCTCTGAAGAGACATCCGTT 59.104 47.619 11.56 0.00 44.74 4.44
3292 3492 2.495270 TCTGTGCTCTGAAGAGACATCC 59.505 50.000 11.56 0.08 44.74 3.51
3296 3496 2.945278 CAGTCTGTGCTCTGAAGAGAC 58.055 52.381 11.56 7.13 44.74 3.36
3410 3611 7.227049 ACCATTATCCGTTTCAAATTTCAGT 57.773 32.000 0.00 0.00 0.00 3.41
3431 3632 1.630369 AGAGGCAGCAGTTCATAACCA 59.370 47.619 0.00 0.00 0.00 3.67
3485 3686 3.530265 ACTCGTACAAACTTGACCACA 57.470 42.857 0.00 0.00 0.00 4.17
3488 3689 5.473796 TTTCAACTCGTACAAACTTGACC 57.526 39.130 0.00 0.00 0.00 4.02
3496 3697 7.801315 GTGCTCATTAATTTTCAACTCGTACAA 59.199 33.333 0.00 0.00 0.00 2.41
3499 3700 7.428282 TGTGCTCATTAATTTTCAACTCGTA 57.572 32.000 0.00 0.00 0.00 3.43
3535 3736 8.785329 ATAGAAGATTCAAGTTTCAGAGGAAC 57.215 34.615 0.00 0.00 31.35 3.62
3538 3739 7.334090 TGGATAGAAGATTCAAGTTTCAGAGG 58.666 38.462 0.00 0.00 0.00 3.69
3570 3771 9.631452 CAACTCTAGCGATATATGAATTTCTCA 57.369 33.333 0.00 0.00 38.81 3.27
3618 3819 1.499056 GAACATGGCAGCACACGAG 59.501 57.895 0.00 0.00 0.00 4.18
3619 3820 1.965930 GGAACATGGCAGCACACGA 60.966 57.895 0.00 0.00 0.00 4.35
3632 3833 2.203337 GCTGCACCAGGTGGAACA 60.203 61.111 21.77 9.77 39.98 3.18
3639 3840 4.694233 ACGAGCAGCTGCACCAGG 62.694 66.667 38.24 22.09 45.16 4.45
3640 3841 1.789078 AAAACGAGCAGCTGCACCAG 61.789 55.000 38.24 26.47 45.16 4.00
3676 3877 9.384764 GAAGATGCAGTAGTCCTAACTTAATTT 57.615 33.333 0.00 0.00 36.92 1.82
3686 3887 6.344500 CAACTTATGAAGATGCAGTAGTCCT 58.656 40.000 0.00 0.00 0.00 3.85
3705 3935 3.306502 CCTGCCAATGATTGAAGCAACTT 60.307 43.478 6.76 0.00 32.14 2.66
3740 3970 0.693049 ACCTAAAGTGCCCAGTCCTG 59.307 55.000 0.00 0.00 0.00 3.86
3785 4015 3.418995 TCTCACTCGGGTATGCTATACC 58.581 50.000 13.79 13.79 36.88 2.73
3812 4042 3.216800 TGAGTTGCTTTCAGACATGCTT 58.783 40.909 0.00 0.00 0.00 3.91
3813 4043 2.854963 TGAGTTGCTTTCAGACATGCT 58.145 42.857 0.00 0.00 0.00 3.79
3814 4044 3.844577 ATGAGTTGCTTTCAGACATGC 57.155 42.857 0.00 0.00 0.00 4.06
3819 4049 6.037940 GCAATGATCTATGAGTTGCTTTCAGA 59.962 38.462 0.00 0.00 41.30 3.27
3840 4070 8.584063 TGCTAATATGGATAACATGATGCAAT 57.416 30.769 0.00 0.00 40.82 3.56
3851 4081 9.365906 ACAATCCAATGTTGCTAATATGGATAA 57.634 29.630 12.24 0.00 34.24 1.75
3891 4125 9.898152 ATATGAAGCTCCTAGGAATTATTTAGC 57.102 33.333 13.77 10.01 0.00 3.09
3929 4246 6.825721 AGTGAAAATGGGTATTGTCAGATCTC 59.174 38.462 0.00 0.00 40.36 2.75
4098 4416 3.384789 CCCAAATGGAGTCATCGAGTAGA 59.615 47.826 0.00 0.00 37.39 2.59
4133 4451 8.522830 AGAAATCATTAATGGACACGAAATTGT 58.477 29.630 15.36 0.00 0.00 2.71
4152 4470 6.671190 CACAAACAGTGCTGATAAGAAATCA 58.329 36.000 6.17 0.00 42.15 2.57
4175 4493 1.748879 GCAGGCTTGGTAATCGGCA 60.749 57.895 0.00 0.00 0.00 5.69
4185 4503 0.740149 TGTTCAAGTGTGCAGGCTTG 59.260 50.000 18.86 18.86 42.32 4.01
4198 4516 4.823442 ACAACTGAAGCTGATGATGTTCAA 59.177 37.500 0.00 0.00 0.00 2.69
4200 4518 4.142730 GGACAACTGAAGCTGATGATGTTC 60.143 45.833 0.00 0.00 0.00 3.18
4203 4521 3.340928 TGGACAACTGAAGCTGATGATG 58.659 45.455 0.00 0.00 0.00 3.07
4217 4535 6.917217 TCACCAATTTTCATTTTGGACAAC 57.083 33.333 8.58 0.00 44.23 3.32
4218 4536 6.881065 TGTTCACCAATTTTCATTTTGGACAA 59.119 30.769 8.58 0.00 44.23 3.18
4245 4563 2.604912 ACCCCCAGAAGGAAAATGAC 57.395 50.000 0.00 0.00 38.24 3.06
4246 4564 3.265489 AGTACCCCCAGAAGGAAAATGA 58.735 45.455 0.00 0.00 38.24 2.57
4249 4567 4.476297 GAAAAGTACCCCCAGAAGGAAAA 58.524 43.478 0.00 0.00 38.24 2.29
4285 4603 6.893020 AAGGTAAAACCCTGAGTATGAGAT 57.107 37.500 0.00 0.00 39.75 2.75
4298 4616 4.279169 GGACACCAAAGGTAAGGTAAAACC 59.721 45.833 0.00 0.00 36.07 3.27
4311 4630 6.318900 GGTGAAGATATTAAGGGACACCAAAG 59.681 42.308 0.00 0.00 43.75 2.77
4316 4635 6.415573 ACAAGGTGAAGATATTAAGGGACAC 58.584 40.000 0.00 0.00 0.00 3.67
4324 4643 5.127194 AGACGCTGACAAGGTGAAGATATTA 59.873 40.000 0.00 0.00 0.00 0.98
4325 4644 4.081420 AGACGCTGACAAGGTGAAGATATT 60.081 41.667 0.00 0.00 0.00 1.28
4328 4647 1.620819 AGACGCTGACAAGGTGAAGAT 59.379 47.619 0.00 0.00 0.00 2.40
4344 4663 2.159448 CCTCTAGCAACTCACTGAGACG 60.159 54.545 13.25 4.34 33.32 4.18
4356 4675 6.152334 CGATATACGAGCAGCCTCTAGCAA 62.152 50.000 0.00 0.00 44.71 3.91
4372 4691 4.442073 ACGCGGTTACAACATTCGATATAC 59.558 41.667 12.47 0.00 0.00 1.47
4377 4696 1.062258 GACGCGGTTACAACATTCGA 58.938 50.000 12.47 0.00 0.00 3.71
4391 4710 5.225129 GCTTACAATCACATTAAAAGACGCG 59.775 40.000 3.53 3.53 0.00 6.01
4446 4765 4.442038 GGGGAAAAGGCCTCCAAG 57.558 61.111 5.23 0.00 34.34 3.61
4462 4784 5.527214 CACACACACACACAATATATAGGGG 59.473 44.000 0.00 0.00 0.00 4.79
4463 4785 6.037062 CACACACACACACACAATATATAGGG 59.963 42.308 0.00 0.00 0.00 3.53
4471 4793 2.095314 CACACACACACACACACACAAT 60.095 45.455 0.00 0.00 0.00 2.71
4480 4802 0.455410 ACCAATGCACACACACACAC 59.545 50.000 0.00 0.00 0.00 3.82
4486 4808 4.229096 CAAGATTACACCAATGCACACAC 58.771 43.478 0.00 0.00 0.00 3.82
4487 4809 3.255395 CCAAGATTACACCAATGCACACA 59.745 43.478 0.00 0.00 0.00 3.72
4492 4814 4.236935 CACAACCAAGATTACACCAATGC 58.763 43.478 0.00 0.00 0.00 3.56
4493 4815 5.221880 CACACAACCAAGATTACACCAATG 58.778 41.667 0.00 0.00 0.00 2.82
4494 4816 4.261994 GCACACAACCAAGATTACACCAAT 60.262 41.667 0.00 0.00 0.00 3.16
4495 4817 3.067461 GCACACAACCAAGATTACACCAA 59.933 43.478 0.00 0.00 0.00 3.67
4496 4818 2.621055 GCACACAACCAAGATTACACCA 59.379 45.455 0.00 0.00 0.00 4.17
4497 4819 2.621055 TGCACACAACCAAGATTACACC 59.379 45.455 0.00 0.00 0.00 4.16
4498 4820 3.980646 TGCACACAACCAAGATTACAC 57.019 42.857 0.00 0.00 0.00 2.90
4499 4821 4.140536 TGATGCACACAACCAAGATTACA 58.859 39.130 0.00 0.00 0.00 2.41
4500 4822 4.764679 TGATGCACACAACCAAGATTAC 57.235 40.909 0.00 0.00 0.00 1.89
4501 4823 6.179756 AGTATGATGCACACAACCAAGATTA 58.820 36.000 0.00 0.00 0.00 1.75
4502 4824 5.012239 AGTATGATGCACACAACCAAGATT 58.988 37.500 0.00 0.00 0.00 2.40
4503 4825 4.592942 AGTATGATGCACACAACCAAGAT 58.407 39.130 0.00 0.00 0.00 2.40
4504 4826 4.002982 GAGTATGATGCACACAACCAAGA 58.997 43.478 0.00 0.00 0.00 3.02
4505 4827 3.752747 TGAGTATGATGCACACAACCAAG 59.247 43.478 0.00 0.00 0.00 3.61
4506 4828 3.749226 TGAGTATGATGCACACAACCAA 58.251 40.909 0.00 0.00 0.00 3.67
4521 4843 3.596940 ACCCCGTCTCTGTATGAGTAT 57.403 47.619 0.00 0.00 43.13 2.12
4524 4846 3.223435 ACATACCCCGTCTCTGTATGAG 58.777 50.000 13.95 0.00 42.74 2.90
4540 4862 8.070171 GGCAATACAAACATCATGAGTACATAC 58.930 37.037 0.09 0.00 35.09 2.39
4582 4939 4.407296 TGGTAAAGGCCAAGTTTTGTTGAT 59.593 37.500 5.01 0.00 35.25 2.57
4609 4966 2.869636 GCTAGGGAGCTACACATGCATC 60.870 54.545 0.00 0.00 45.98 3.91
4634 4991 2.224523 ACTTCTGATTTTGTCCCGCTGA 60.225 45.455 0.00 0.00 0.00 4.26
4642 4999 7.807977 ACAGTTGTCATACTTCTGATTTTGT 57.192 32.000 0.00 0.00 0.00 2.83
4671 5028 9.262472 GTTACTGTCGCTTTTTCTGTTATAATG 57.738 33.333 0.00 0.00 0.00 1.90
4672 5029 8.995220 TGTTACTGTCGCTTTTTCTGTTATAAT 58.005 29.630 0.00 0.00 0.00 1.28
4674 5031 7.868922 TCTGTTACTGTCGCTTTTTCTGTTATA 59.131 33.333 0.00 0.00 0.00 0.98
4675 5032 6.704493 TCTGTTACTGTCGCTTTTTCTGTTAT 59.296 34.615 0.00 0.00 0.00 1.89
4676 5033 6.044046 TCTGTTACTGTCGCTTTTTCTGTTA 58.956 36.000 0.00 0.00 0.00 2.41
4678 5035 4.439057 TCTGTTACTGTCGCTTTTTCTGT 58.561 39.130 0.00 0.00 0.00 3.41
4679 5036 4.084328 CCTCTGTTACTGTCGCTTTTTCTG 60.084 45.833 0.00 0.00 0.00 3.02
4723 5082 8.602472 AAATGGGGATTACTTGCTTGTATTTA 57.398 30.769 0.00 0.00 0.00 1.40
4725 5084 7.494922 AAAATGGGGATTACTTGCTTGTATT 57.505 32.000 0.00 0.00 0.00 1.89
4771 5142 9.091784 CACGTGCATAATCATTATAGCTAGATT 57.908 33.333 0.82 9.96 35.17 2.40
4772 5143 8.470002 TCACGTGCATAATCATTATAGCTAGAT 58.530 33.333 11.67 0.00 0.00 1.98
4773 5144 7.826690 TCACGTGCATAATCATTATAGCTAGA 58.173 34.615 11.67 0.00 0.00 2.43
4774 5145 8.640091 ATCACGTGCATAATCATTATAGCTAG 57.360 34.615 11.67 8.31 0.00 3.42
4775 5146 9.516314 GTATCACGTGCATAATCATTATAGCTA 57.484 33.333 11.67 0.00 0.00 3.32
4776 5147 8.034804 TGTATCACGTGCATAATCATTATAGCT 58.965 33.333 11.67 0.00 0.00 3.32
4777 5148 8.185003 TGTATCACGTGCATAATCATTATAGC 57.815 34.615 11.67 0.00 0.00 2.97
4780 5151 8.017373 GCTTTGTATCACGTGCATAATCATTAT 58.983 33.333 11.67 0.00 0.00 1.28
4781 5152 7.226523 AGCTTTGTATCACGTGCATAATCATTA 59.773 33.333 11.67 0.00 0.00 1.90
4782 5153 6.038603 AGCTTTGTATCACGTGCATAATCATT 59.961 34.615 11.67 0.00 0.00 2.57
4783 5154 5.528690 AGCTTTGTATCACGTGCATAATCAT 59.471 36.000 11.67 0.00 0.00 2.45
4784 5155 4.875536 AGCTTTGTATCACGTGCATAATCA 59.124 37.500 11.67 3.03 0.00 2.57
4785 5156 5.200454 CAGCTTTGTATCACGTGCATAATC 58.800 41.667 11.67 0.59 0.00 1.75
4786 5157 4.035558 CCAGCTTTGTATCACGTGCATAAT 59.964 41.667 11.67 1.19 0.00 1.28
4787 5158 3.373748 CCAGCTTTGTATCACGTGCATAA 59.626 43.478 11.67 2.84 0.00 1.90
4788 5159 2.935849 CCAGCTTTGTATCACGTGCATA 59.064 45.455 11.67 7.12 0.00 3.14
4798 5169 2.159085 GGTAGAGACGCCAGCTTTGTAT 60.159 50.000 0.00 0.00 0.00 2.29
4851 5222 4.202388 TGCAGCAGAAGATATAGCATGGAA 60.202 41.667 0.00 0.00 0.00 3.53
4860 5231 3.147629 GCCAGAATGCAGCAGAAGATAT 58.852 45.455 0.00 0.00 31.97 1.63
4878 5249 3.302344 GGCAGAAAAAGCCCGCCA 61.302 61.111 0.00 0.00 46.50 5.69
4893 5264 2.997485 ATTGCTCGTTGAAAGAAGGC 57.003 45.000 0.00 0.00 0.00 4.35
4894 5265 4.488126 TGAATTGCTCGTTGAAAGAAGG 57.512 40.909 0.00 0.00 0.00 3.46
4898 5269 6.779117 ACTATGATGAATTGCTCGTTGAAAG 58.221 36.000 0.00 0.00 0.00 2.62
4904 5275 5.180117 GGCATTACTATGATGAATTGCTCGT 59.820 40.000 0.00 0.00 33.37 4.18
4927 5298 8.672815 GGAAGTTGAGAAAATCTTAGAGAATGG 58.327 37.037 0.00 0.00 0.00 3.16
4936 5307 7.352079 ACAATGTGGAAGTTGAGAAAATCTT 57.648 32.000 0.00 0.00 0.00 2.40
4938 5309 8.330302 CAAAACAATGTGGAAGTTGAGAAAATC 58.670 33.333 0.00 0.00 0.00 2.17
4967 5338 7.125391 AGGCCTCATTGTATCCAAGAAATTTA 58.875 34.615 0.00 0.00 33.17 1.40
4986 5357 2.541556 GAACATACACTCGAAGGCCTC 58.458 52.381 5.23 0.00 0.00 4.70
5147 5518 4.209911 GCCTTGTTTCTCATTTTGTCAAGC 59.790 41.667 0.00 0.00 32.37 4.01
5160 5531 2.309755 TGATGGAGATGGCCTTGTTTCT 59.690 45.455 3.32 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.