Multiple sequence alignment - TraesCS1B01G352400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G352400 chr1B 100.000 5060 0 0 1 5060 583211883 583206824 0.000000e+00 9345.0
1 TraesCS1B01G352400 chr1B 90.545 973 46 14 1147 2107 684276895 684277833 0.000000e+00 1245.0
2 TraesCS1B01G352400 chr1B 82.051 351 38 22 1 340 334813699 334813363 4.990000e-70 276.0
3 TraesCS1B01G352400 chr1A 94.590 3789 121 40 386 4131 530261038 530257291 0.000000e+00 5784.0
4 TraesCS1B01G352400 chr1A 91.630 454 33 5 4590 5040 530256208 530255757 1.550000e-174 623.0
5 TraesCS1B01G352400 chr1A 92.988 328 16 6 4132 4458 530257253 530256932 5.930000e-129 472.0
6 TraesCS1B01G352400 chr1A 88.722 133 12 3 4925 5054 309695002 309694870 5.240000e-35 159.0
7 TraesCS1B01G352400 chr1D 95.601 3296 108 16 393 3680 431830108 431826842 0.000000e+00 5249.0
8 TraesCS1B01G352400 chr1D 90.966 642 31 15 3744 4374 431826765 431826140 0.000000e+00 839.0
9 TraesCS1B01G352400 chr1D 85.143 350 25 17 4576 4923 431825681 431825357 2.920000e-87 333.0
10 TraesCS1B01G352400 chr1D 91.089 202 14 1 1800 1997 491900768 491900969 2.320000e-68 270.0
11 TraesCS1B01G352400 chr1D 84.536 97 0 1 1687 1783 491900694 491900775 1.170000e-11 82.4
12 TraesCS1B01G352400 chr3D 88.220 1180 129 8 984 2160 379539630 379538458 0.000000e+00 1400.0
13 TraesCS1B01G352400 chr3D 79.344 823 108 27 984 1804 150824740 150823978 5.810000e-144 521.0
14 TraesCS1B01G352400 chr3D 81.375 349 61 4 2622 2968 379537651 379537305 1.070000e-71 281.0
15 TraesCS1B01G352400 chr3D 89.394 132 12 2 4925 5054 465769622 465769491 1.130000e-36 165.0
16 TraesCS1B01G352400 chr3A 88.402 1164 126 7 1000 2160 503755146 503753989 0.000000e+00 1393.0
17 TraesCS1B01G352400 chr3A 79.049 988 148 45 3077 4032 503752773 503751813 1.550000e-174 623.0
18 TraesCS1B01G352400 chr3A 81.870 353 60 4 2622 2972 503753192 503752842 1.380000e-75 294.0
19 TraesCS1B01G352400 chr3B 87.993 1166 131 7 998 2160 495154025 495152866 0.000000e+00 1369.0
20 TraesCS1B01G352400 chr3B 91.791 134 9 2 1 134 662017779 662017910 8.650000e-43 185.0
21 TraesCS1B01G352400 chr3B 87.121 132 12 3 116 243 735258044 735258174 1.470000e-30 145.0
22 TraesCS1B01G352400 chr4B 76.776 1985 410 31 1016 2961 667726395 667728367 0.000000e+00 1064.0
23 TraesCS1B01G352400 chr4B 86.640 247 13 7 114 340 562049175 562048929 6.500000e-64 255.0
24 TraesCS1B01G352400 chr4B 86.640 247 13 7 114 340 586897791 586897545 6.500000e-64 255.0
25 TraesCS1B01G352400 chr4B 79.403 335 61 8 2636 2966 92534710 92534380 3.940000e-56 230.0
26 TraesCS1B01G352400 chr4B 87.861 173 20 1 1 173 380373034 380373205 8.590000e-48 202.0
27 TraesCS1B01G352400 chr5A 91.789 341 25 1 1388 1728 53333101 53333438 5.930000e-129 472.0
28 TraesCS1B01G352400 chr5A 92.664 259 15 2 1800 2054 53333462 53333720 2.230000e-98 370.0
29 TraesCS1B01G352400 chr5A 94.393 107 5 1 2051 2156 53360687 53360793 4.050000e-36 163.0
30 TraesCS1B01G352400 chr7B 86.111 360 28 6 1 340 648166658 648167015 8.000000e-98 368.0
31 TraesCS1B01G352400 chr7B 87.398 246 11 7 114 339 478539019 478539264 1.080000e-66 265.0
32 TraesCS1B01G352400 chr7B 85.020 247 17 6 114 340 414683333 414683579 3.050000e-57 233.0
33 TraesCS1B01G352400 chr7B 90.116 172 16 1 1 172 39615969 39615799 6.590000e-54 222.0
34 TraesCS1B01G352400 chr7B 91.304 138 10 2 1 138 714600592 714600457 2.410000e-43 187.0
35 TraesCS1B01G352400 chr7B 92.857 42 3 0 4410 4451 192088126 192088167 1.520000e-05 62.1
36 TraesCS1B01G352400 chr2B 87.097 248 12 7 114 341 6960176 6960423 3.890000e-66 263.0
37 TraesCS1B01G352400 chr2B 86.694 248 13 7 114 341 6877545 6877792 1.810000e-64 257.0
38 TraesCS1B01G352400 chr2B 86.420 243 13 8 117 339 640699525 640699767 1.090000e-61 248.0
39 TraesCS1B01G352400 chr2B 91.603 131 9 2 1 131 124038 124166 4.020000e-41 180.0
40 TraesCS1B01G352400 chr2B 93.333 90 3 2 89 175 2408216 2408305 4.110000e-26 130.0
41 TraesCS1B01G352400 chr5B 86.585 246 13 7 116 341 407636310 407636555 2.340000e-63 254.0
42 TraesCS1B01G352400 chr5B 85.328 259 16 9 116 352 520633684 520633426 1.090000e-61 248.0
43 TraesCS1B01G352400 chr5B 85.714 245 16 7 116 341 54027961 54028205 1.820000e-59 241.0
44 TraesCS1B01G352400 chr5B 85.714 245 15 6 116 340 452205947 452205703 1.820000e-59 241.0
45 TraesCS1B01G352400 chr5B 94.958 119 5 1 1 119 571656941 571657058 8.650000e-43 185.0
46 TraesCS1B01G352400 chr4D 79.701 335 62 6 2636 2967 62736955 62736624 2.350000e-58 237.0
47 TraesCS1B01G352400 chr4A 79.420 345 63 8 2627 2967 534169108 534169448 2.350000e-58 237.0
48 TraesCS1B01G352400 chr4A 81.092 238 41 4 2732 2967 534171675 534171910 2.410000e-43 187.0
49 TraesCS1B01G352400 chr4A 95.726 117 4 1 1 117 743399563 743399678 2.410000e-43 187.0
50 TraesCS1B01G352400 chr4A 88.276 145 15 2 2809 2952 534212227 534212370 6.740000e-39 172.0
51 TraesCS1B01G352400 chr2D 83.077 260 21 9 112 350 629973529 629973272 1.100000e-51 215.0
52 TraesCS1B01G352400 chr2A 91.729 133 9 2 1 132 639072269 639072400 3.110000e-42 183.0
53 TraesCS1B01G352400 chrUn 90.152 132 10 3 4925 5054 101224742 101224872 8.710000e-38 169.0
54 TraesCS1B01G352400 chr6D 90.152 132 10 3 4925 5054 291664784 291664654 8.710000e-38 169.0
55 TraesCS1B01G352400 chr6D 87.218 133 13 4 4925 5053 3294234 3294102 1.140000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G352400 chr1B 583206824 583211883 5059 True 9345.000000 9345 100.000000 1 5060 1 chr1B.!!$R2 5059
1 TraesCS1B01G352400 chr1B 684276895 684277833 938 False 1245.000000 1245 90.545000 1147 2107 1 chr1B.!!$F1 960
2 TraesCS1B01G352400 chr1A 530255757 530261038 5281 True 2293.000000 5784 93.069333 386 5040 3 chr1A.!!$R2 4654
3 TraesCS1B01G352400 chr1D 431825357 431830108 4751 True 2140.333333 5249 90.570000 393 4923 3 chr1D.!!$R1 4530
4 TraesCS1B01G352400 chr3D 379537305 379539630 2325 True 840.500000 1400 84.797500 984 2968 2 chr3D.!!$R3 1984
5 TraesCS1B01G352400 chr3D 150823978 150824740 762 True 521.000000 521 79.344000 984 1804 1 chr3D.!!$R1 820
6 TraesCS1B01G352400 chr3A 503751813 503755146 3333 True 770.000000 1393 83.107000 1000 4032 3 chr3A.!!$R1 3032
7 TraesCS1B01G352400 chr3B 495152866 495154025 1159 True 1369.000000 1369 87.993000 998 2160 1 chr3B.!!$R1 1162
8 TraesCS1B01G352400 chr4B 667726395 667728367 1972 False 1064.000000 1064 76.776000 1016 2961 1 chr4B.!!$F2 1945
9 TraesCS1B01G352400 chr5A 53333101 53333720 619 False 421.000000 472 92.226500 1388 2054 2 chr5A.!!$F2 666
10 TraesCS1B01G352400 chr4A 534169108 534171910 2802 False 212.000000 237 80.256000 2627 2967 2 chr4A.!!$F3 340

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 492 0.037590 TGTCATTGCCCCAGGTACAC 59.962 55.0 0.00 0.0 0.00 2.90 F
637 646 0.251077 ACTACCGCCTAGATACCGGG 60.251 60.0 6.32 0.0 45.93 5.73 F
1866 1941 0.255318 AGATACACCTCGTCCTCGGT 59.745 55.0 0.00 0.0 37.69 4.69 F
3410 6325 0.888619 TCTCCACTACAGAAGCACCG 59.111 55.0 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 2422 2.031163 AGCTGCACCCTCACGTTC 59.969 61.111 1.02 0.0 0.00 3.95 R
2835 3284 4.443266 GCGAGCTCGGTCTTGCCT 62.443 66.667 35.10 0.0 37.48 4.75 R
3442 6357 0.248054 GCACACAACCACACACGAAG 60.248 55.000 0.00 0.0 0.00 3.79 R
4724 8309 0.181587 TCGCACCAAGTTCCCTTTGA 59.818 50.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.815840 TTGGTTGATATGTCAAGAAACAAGA 57.184 32.000 4.98 0.00 44.58 3.02
27 28 7.815840 TGGTTGATATGTCAAGAAACAAGAA 57.184 32.000 4.98 0.00 44.58 2.52
28 29 7.874940 TGGTTGATATGTCAAGAAACAAGAAG 58.125 34.615 4.98 0.00 44.58 2.85
29 30 6.803807 GGTTGATATGTCAAGAAACAAGAAGC 59.196 38.462 4.98 0.00 44.58 3.86
30 31 6.169419 TGATATGTCAAGAAACAAGAAGCG 57.831 37.500 0.00 0.00 31.81 4.68
31 32 5.931724 TGATATGTCAAGAAACAAGAAGCGA 59.068 36.000 0.00 0.00 31.81 4.93
32 33 6.595326 TGATATGTCAAGAAACAAGAAGCGAT 59.405 34.615 0.00 0.00 31.81 4.58
33 34 4.472691 TGTCAAGAAACAAGAAGCGATG 57.527 40.909 0.00 0.00 0.00 3.84
34 35 3.876914 TGTCAAGAAACAAGAAGCGATGT 59.123 39.130 0.00 0.00 0.00 3.06
35 36 5.053811 TGTCAAGAAACAAGAAGCGATGTA 58.946 37.500 0.00 0.00 0.00 2.29
36 37 5.177511 TGTCAAGAAACAAGAAGCGATGTAG 59.822 40.000 0.00 0.00 0.00 2.74
37 38 5.405571 GTCAAGAAACAAGAAGCGATGTAGA 59.594 40.000 0.00 0.00 0.00 2.59
38 39 5.989168 TCAAGAAACAAGAAGCGATGTAGAA 59.011 36.000 0.00 0.00 0.00 2.10
39 40 6.650807 TCAAGAAACAAGAAGCGATGTAGAAT 59.349 34.615 0.00 0.00 0.00 2.40
40 41 7.173218 TCAAGAAACAAGAAGCGATGTAGAATT 59.827 33.333 0.00 0.00 0.00 2.17
41 42 7.440523 AGAAACAAGAAGCGATGTAGAATTT 57.559 32.000 0.00 0.00 0.00 1.82
42 43 8.547967 AGAAACAAGAAGCGATGTAGAATTTA 57.452 30.769 0.00 0.00 0.00 1.40
43 44 8.999431 AGAAACAAGAAGCGATGTAGAATTTAA 58.001 29.630 0.00 0.00 0.00 1.52
44 45 9.774742 GAAACAAGAAGCGATGTAGAATTTAAT 57.225 29.630 0.00 0.00 0.00 1.40
45 46 9.559958 AAACAAGAAGCGATGTAGAATTTAATG 57.440 29.630 0.00 0.00 0.00 1.90
46 47 7.189512 ACAAGAAGCGATGTAGAATTTAATGC 58.810 34.615 0.00 0.00 0.00 3.56
47 48 6.925610 AGAAGCGATGTAGAATTTAATGCA 57.074 33.333 0.00 0.00 0.00 3.96
48 49 7.502120 AGAAGCGATGTAGAATTTAATGCAT 57.498 32.000 0.00 0.00 0.00 3.96
49 50 7.579726 AGAAGCGATGTAGAATTTAATGCATC 58.420 34.615 0.00 7.04 0.00 3.91
52 53 4.778025 CGATGTAGAATTTAATGCATCGCG 59.222 41.667 18.88 0.00 45.32 5.87
53 54 3.872354 TGTAGAATTTAATGCATCGCGC 58.128 40.909 0.00 0.00 42.89 6.86
54 55 2.405892 AGAATTTAATGCATCGCGCC 57.594 45.000 0.00 0.00 41.33 6.53
55 56 1.001378 AGAATTTAATGCATCGCGCCC 60.001 47.619 0.00 0.00 41.33 6.13
56 57 0.743688 AATTTAATGCATCGCGCCCA 59.256 45.000 0.00 0.00 41.33 5.36
57 58 0.743688 ATTTAATGCATCGCGCCCAA 59.256 45.000 0.00 0.00 41.33 4.12
58 59 0.100325 TTTAATGCATCGCGCCCAAG 59.900 50.000 0.00 0.00 41.33 3.61
59 60 1.029408 TTAATGCATCGCGCCCAAGT 61.029 50.000 0.00 0.00 41.33 3.16
60 61 1.713937 TAATGCATCGCGCCCAAGTG 61.714 55.000 0.00 0.00 41.33 3.16
62 63 3.737172 GCATCGCGCCCAAGTGTT 61.737 61.111 0.00 0.00 32.94 3.32
63 64 2.953821 CATCGCGCCCAAGTGTTT 59.046 55.556 0.00 0.00 0.00 2.83
64 65 1.285641 CATCGCGCCCAAGTGTTTT 59.714 52.632 0.00 0.00 0.00 2.43
65 66 1.003262 CATCGCGCCCAAGTGTTTTG 61.003 55.000 0.00 0.00 0.00 2.44
66 67 2.141122 ATCGCGCCCAAGTGTTTTGG 62.141 55.000 0.00 0.00 39.25 3.28
79 80 8.620116 CCAAGTGTTTTGGGATTATTTGATTT 57.380 30.769 0.00 0.00 35.96 2.17
80 81 9.065798 CCAAGTGTTTTGGGATTATTTGATTTT 57.934 29.630 0.00 0.00 35.96 1.82
83 84 8.987890 AGTGTTTTGGGATTATTTGATTTTTCG 58.012 29.630 0.00 0.00 0.00 3.46
84 85 8.769891 GTGTTTTGGGATTATTTGATTTTTCGT 58.230 29.630 0.00 0.00 0.00 3.85
85 86 9.982651 TGTTTTGGGATTATTTGATTTTTCGTA 57.017 25.926 0.00 0.00 0.00 3.43
107 108 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
108 109 3.695060 AGATGACTTACACACCTAGACGG 59.305 47.826 0.00 0.00 39.35 4.79
109 110 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
110 111 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
111 112 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
112 113 2.040813 ACTTACACACCTAGACGGAGGA 59.959 50.000 7.23 0.00 39.15 3.71
113 114 2.885135 TACACACCTAGACGGAGGAA 57.115 50.000 7.23 0.00 39.15 3.36
114 115 1.546961 ACACACCTAGACGGAGGAAG 58.453 55.000 7.23 2.66 39.15 3.46
115 116 1.203025 ACACACCTAGACGGAGGAAGT 60.203 52.381 7.23 3.19 39.15 3.01
116 117 2.040813 ACACACCTAGACGGAGGAAGTA 59.959 50.000 7.23 0.00 39.15 2.24
117 118 2.683867 CACACCTAGACGGAGGAAGTAG 59.316 54.545 7.23 0.00 39.15 2.57
118 119 2.308275 ACACCTAGACGGAGGAAGTAGT 59.692 50.000 7.23 0.00 39.15 2.73
119 120 3.521126 ACACCTAGACGGAGGAAGTAGTA 59.479 47.826 7.23 0.00 39.15 1.82
120 121 4.018960 ACACCTAGACGGAGGAAGTAGTAA 60.019 45.833 7.23 0.00 39.15 2.24
121 122 4.335037 CACCTAGACGGAGGAAGTAGTAAC 59.665 50.000 7.23 0.00 39.15 2.50
122 123 4.018960 ACCTAGACGGAGGAAGTAGTAACA 60.019 45.833 7.23 0.00 39.15 2.41
123 124 5.131784 CCTAGACGGAGGAAGTAGTAACAT 58.868 45.833 0.00 0.00 39.15 2.71
124 125 6.126652 ACCTAGACGGAGGAAGTAGTAACATA 60.127 42.308 7.23 0.00 39.15 2.29
125 126 6.204495 CCTAGACGGAGGAAGTAGTAACATAC 59.796 46.154 0.00 0.00 39.15 2.39
126 127 5.503927 AGACGGAGGAAGTAGTAACATACA 58.496 41.667 0.00 0.00 0.00 2.29
127 128 5.356470 AGACGGAGGAAGTAGTAACATACAC 59.644 44.000 0.00 0.00 0.00 2.90
128 129 5.012239 ACGGAGGAAGTAGTAACATACACA 58.988 41.667 0.00 0.00 0.00 3.72
129 130 5.655532 ACGGAGGAAGTAGTAACATACACAT 59.344 40.000 0.00 0.00 0.00 3.21
130 131 6.830324 ACGGAGGAAGTAGTAACATACACATA 59.170 38.462 0.00 0.00 0.00 2.29
131 132 7.504911 ACGGAGGAAGTAGTAACATACACATAT 59.495 37.037 0.00 0.00 0.00 1.78
132 133 8.358148 CGGAGGAAGTAGTAACATACACATATT 58.642 37.037 0.00 0.00 0.00 1.28
133 134 9.694137 GGAGGAAGTAGTAACATACACATATTC 57.306 37.037 0.00 0.00 0.00 1.75
134 135 9.694137 GAGGAAGTAGTAACATACACATATTCC 57.306 37.037 0.00 0.00 33.19 3.01
135 136 9.435570 AGGAAGTAGTAACATACACATATTCCT 57.564 33.333 0.00 0.00 37.43 3.36
156 157 9.884814 ATTCCTAGACTATGTTACTACCTCAAT 57.115 33.333 0.00 0.00 0.00 2.57
159 160 9.796180 CCTAGACTATGTTACTACCTCAATAGT 57.204 37.037 0.00 0.00 38.89 2.12
161 162 8.466617 AGACTATGTTACTACCTCAATAGTGG 57.533 38.462 0.00 0.00 36.09 4.00
162 163 7.506261 AGACTATGTTACTACCTCAATAGTGGG 59.494 40.741 0.00 0.00 36.09 4.61
163 164 7.130775 ACTATGTTACTACCTCAATAGTGGGT 58.869 38.462 8.14 8.14 36.09 4.51
164 165 8.284435 ACTATGTTACTACCTCAATAGTGGGTA 58.716 37.037 9.29 9.29 36.09 3.69
165 166 7.598759 ATGTTACTACCTCAATAGTGGGTAG 57.401 40.000 24.28 24.28 45.24 3.18
171 172 7.598759 CTACCTCAATAGTGGGTAGTAACAT 57.401 40.000 20.63 0.00 40.39 2.71
172 173 8.701908 CTACCTCAATAGTGGGTAGTAACATA 57.298 38.462 20.63 0.31 40.39 2.29
173 174 7.983166 ACCTCAATAGTGGGTAGTAACATAA 57.017 36.000 2.07 0.00 32.64 1.90
174 175 8.019656 ACCTCAATAGTGGGTAGTAACATAAG 57.980 38.462 2.07 0.00 32.64 1.73
175 176 7.622479 ACCTCAATAGTGGGTAGTAACATAAGT 59.378 37.037 2.07 0.00 32.64 2.24
176 177 7.926555 CCTCAATAGTGGGTAGTAACATAAGTG 59.073 40.741 0.00 0.00 0.00 3.16
177 178 8.370266 TCAATAGTGGGTAGTAACATAAGTGT 57.630 34.615 0.00 0.00 41.28 3.55
178 179 8.255206 TCAATAGTGGGTAGTAACATAAGTGTG 58.745 37.037 0.00 0.00 38.92 3.82
179 180 5.416271 AGTGGGTAGTAACATAAGTGTGG 57.584 43.478 0.00 0.00 38.92 4.17
180 181 4.842380 AGTGGGTAGTAACATAAGTGTGGT 59.158 41.667 0.00 0.00 38.92 4.16
181 182 6.018469 AGTGGGTAGTAACATAAGTGTGGTA 58.982 40.000 0.00 0.00 38.92 3.25
182 183 6.497954 AGTGGGTAGTAACATAAGTGTGGTAA 59.502 38.462 0.00 0.00 38.92 2.85
183 184 6.591448 GTGGGTAGTAACATAAGTGTGGTAAC 59.409 42.308 0.00 0.00 38.92 2.50
202 203 8.215926 TGGTAACATAAGTGTGGTAATATTGC 57.784 34.615 0.00 0.00 46.17 3.56
203 204 7.829706 TGGTAACATAAGTGTGGTAATATTGCA 59.170 33.333 5.87 0.00 46.17 4.08
204 205 8.846211 GGTAACATAAGTGTGGTAATATTGCAT 58.154 33.333 5.87 0.00 38.92 3.96
207 208 7.715657 ACATAAGTGTGGTAATATTGCATTGG 58.284 34.615 5.87 0.00 37.14 3.16
208 209 5.596836 AAGTGTGGTAATATTGCATTGGG 57.403 39.130 5.87 0.00 0.00 4.12
209 210 4.865905 AGTGTGGTAATATTGCATTGGGA 58.134 39.130 5.87 0.00 0.00 4.37
210 211 4.644685 AGTGTGGTAATATTGCATTGGGAC 59.355 41.667 5.87 0.00 0.00 4.46
211 212 4.400884 GTGTGGTAATATTGCATTGGGACA 59.599 41.667 5.87 0.00 0.00 4.02
212 213 5.068987 GTGTGGTAATATTGCATTGGGACAT 59.931 40.000 5.87 0.00 39.30 3.06
213 214 5.068855 TGTGGTAATATTGCATTGGGACATG 59.931 40.000 5.87 0.00 39.30 3.21
214 215 5.068987 GTGGTAATATTGCATTGGGACATGT 59.931 40.000 0.00 0.00 39.30 3.21
215 216 5.068855 TGGTAATATTGCATTGGGACATGTG 59.931 40.000 1.15 0.00 39.30 3.21
216 217 5.301551 GGTAATATTGCATTGGGACATGTGA 59.698 40.000 1.15 0.00 39.30 3.58
217 218 6.015180 GGTAATATTGCATTGGGACATGTGAT 60.015 38.462 1.15 0.00 39.30 3.06
218 219 3.812156 ATTGCATTGGGACATGTGATG 57.188 42.857 1.15 3.48 39.30 3.07
220 221 2.527497 TGCATTGGGACATGTGATGTT 58.473 42.857 1.15 0.00 45.03 2.71
221 222 3.694926 TGCATTGGGACATGTGATGTTA 58.305 40.909 1.15 0.00 45.03 2.41
222 223 3.443329 TGCATTGGGACATGTGATGTTAC 59.557 43.478 1.15 0.00 45.03 2.50
223 224 3.443329 GCATTGGGACATGTGATGTTACA 59.557 43.478 1.15 0.00 45.03 2.41
224 225 4.439153 GCATTGGGACATGTGATGTTACAG 60.439 45.833 1.15 0.00 45.03 2.74
225 226 4.365514 TTGGGACATGTGATGTTACAGT 57.634 40.909 1.15 0.00 45.03 3.55
226 227 5.491323 TTGGGACATGTGATGTTACAGTA 57.509 39.130 1.15 0.00 45.03 2.74
227 228 5.491323 TGGGACATGTGATGTTACAGTAA 57.509 39.130 1.15 0.00 45.03 2.24
228 229 5.242434 TGGGACATGTGATGTTACAGTAAC 58.758 41.667 15.58 15.58 45.03 2.50
229 230 5.012664 TGGGACATGTGATGTTACAGTAACT 59.987 40.000 21.56 9.41 45.03 2.24
230 231 6.211785 TGGGACATGTGATGTTACAGTAACTA 59.788 38.462 21.56 10.50 45.03 2.24
231 232 6.757010 GGGACATGTGATGTTACAGTAACTAG 59.243 42.308 21.56 8.25 45.03 2.57
232 233 6.255887 GGACATGTGATGTTACAGTAACTAGC 59.744 42.308 21.56 12.59 45.03 3.42
233 234 6.936279 ACATGTGATGTTACAGTAACTAGCT 58.064 36.000 21.56 6.57 41.63 3.32
234 235 8.063200 ACATGTGATGTTACAGTAACTAGCTA 57.937 34.615 21.56 4.25 41.63 3.32
235 236 8.528643 ACATGTGATGTTACAGTAACTAGCTAA 58.471 33.333 21.56 3.59 41.63 3.09
236 237 9.025020 CATGTGATGTTACAGTAACTAGCTAAG 57.975 37.037 21.56 6.36 39.38 2.18
237 238 8.118976 TGTGATGTTACAGTAACTAGCTAAGT 57.881 34.615 21.56 0.00 41.49 2.24
256 257 9.260002 AGCTAAGTTACTAGTATTACGTCTCTC 57.740 37.037 2.79 0.00 0.00 3.20
257 258 8.495148 GCTAAGTTACTAGTATTACGTCTCTCC 58.505 40.741 2.79 0.00 0.00 3.71
258 259 9.539825 CTAAGTTACTAGTATTACGTCTCTCCA 57.460 37.037 2.79 0.00 0.00 3.86
259 260 7.784633 AGTTACTAGTATTACGTCTCTCCAC 57.215 40.000 2.79 0.00 0.00 4.02
260 261 7.334090 AGTTACTAGTATTACGTCTCTCCACA 58.666 38.462 2.79 0.00 0.00 4.17
261 262 7.992033 AGTTACTAGTATTACGTCTCTCCACAT 59.008 37.037 2.79 0.00 0.00 3.21
262 263 8.619546 GTTACTAGTATTACGTCTCTCCACATT 58.380 37.037 2.79 0.00 0.00 2.71
263 264 9.836864 TTACTAGTATTACGTCTCTCCACATTA 57.163 33.333 2.79 0.00 0.00 1.90
264 265 8.743085 ACTAGTATTACGTCTCTCCACATTAA 57.257 34.615 0.00 0.00 0.00 1.40
265 266 8.619546 ACTAGTATTACGTCTCTCCACATTAAC 58.380 37.037 0.00 0.00 0.00 2.01
266 267 7.642082 AGTATTACGTCTCTCCACATTAACT 57.358 36.000 0.00 0.00 0.00 2.24
267 268 7.705214 AGTATTACGTCTCTCCACATTAACTC 58.295 38.462 0.00 0.00 0.00 3.01
268 269 5.970317 TTACGTCTCTCCACATTAACTCA 57.030 39.130 0.00 0.00 0.00 3.41
269 270 4.175787 ACGTCTCTCCACATTAACTCAC 57.824 45.455 0.00 0.00 0.00 3.51
270 271 3.827302 ACGTCTCTCCACATTAACTCACT 59.173 43.478 0.00 0.00 0.00 3.41
271 272 4.169508 CGTCTCTCCACATTAACTCACTG 58.830 47.826 0.00 0.00 0.00 3.66
272 273 4.321304 CGTCTCTCCACATTAACTCACTGT 60.321 45.833 0.00 0.00 0.00 3.55
273 274 5.164954 GTCTCTCCACATTAACTCACTGTC 58.835 45.833 0.00 0.00 0.00 3.51
274 275 4.832823 TCTCTCCACATTAACTCACTGTCA 59.167 41.667 0.00 0.00 0.00 3.58
275 276 5.481824 TCTCTCCACATTAACTCACTGTCAT 59.518 40.000 0.00 0.00 0.00 3.06
276 277 6.663523 TCTCTCCACATTAACTCACTGTCATA 59.336 38.462 0.00 0.00 0.00 2.15
277 278 7.343057 TCTCTCCACATTAACTCACTGTCATAT 59.657 37.037 0.00 0.00 0.00 1.78
278 279 8.533569 TCTCCACATTAACTCACTGTCATATA 57.466 34.615 0.00 0.00 0.00 0.86
279 280 8.977412 TCTCCACATTAACTCACTGTCATATAA 58.023 33.333 0.00 0.00 0.00 0.98
280 281 9.599866 CTCCACATTAACTCACTGTCATATAAA 57.400 33.333 0.00 0.00 0.00 1.40
281 282 9.378551 TCCACATTAACTCACTGTCATATAAAC 57.621 33.333 0.00 0.00 0.00 2.01
282 283 9.161629 CCACATTAACTCACTGTCATATAAACA 57.838 33.333 0.00 0.00 0.00 2.83
289 290 8.970691 ACTCACTGTCATATAAACAAATTTGC 57.029 30.769 18.12 0.00 0.00 3.68
290 291 8.796475 ACTCACTGTCATATAAACAAATTTGCT 58.204 29.630 18.12 2.78 0.00 3.91
291 292 8.969121 TCACTGTCATATAAACAAATTTGCTG 57.031 30.769 18.12 6.61 0.00 4.41
292 293 8.791675 TCACTGTCATATAAACAAATTTGCTGA 58.208 29.630 18.12 8.61 0.00 4.26
293 294 9.069078 CACTGTCATATAAACAAATTTGCTGAG 57.931 33.333 18.12 2.66 0.00 3.35
294 295 8.796475 ACTGTCATATAAACAAATTTGCTGAGT 58.204 29.630 18.12 3.85 0.00 3.41
295 296 9.630098 CTGTCATATAAACAAATTTGCTGAGTT 57.370 29.630 18.12 1.68 0.00 3.01
296 297 9.409312 TGTCATATAAACAAATTTGCTGAGTTG 57.591 29.630 18.12 9.63 0.00 3.16
297 298 9.624697 GTCATATAAACAAATTTGCTGAGTTGA 57.375 29.630 18.12 11.60 0.00 3.18
302 303 6.515043 AACAAATTTGCTGAGTTGAATTCG 57.485 33.333 18.12 0.00 0.00 3.34
303 304 5.830912 ACAAATTTGCTGAGTTGAATTCGA 58.169 33.333 18.12 0.00 0.00 3.71
304 305 6.449698 ACAAATTTGCTGAGTTGAATTCGAT 58.550 32.000 18.12 0.00 0.00 3.59
305 306 6.364165 ACAAATTTGCTGAGTTGAATTCGATG 59.636 34.615 18.12 0.00 0.00 3.84
306 307 5.633830 ATTTGCTGAGTTGAATTCGATGT 57.366 34.783 0.00 0.00 0.00 3.06
307 308 5.437289 TTTGCTGAGTTGAATTCGATGTT 57.563 34.783 0.00 0.00 0.00 2.71
308 309 6.552859 TTTGCTGAGTTGAATTCGATGTTA 57.447 33.333 0.00 0.00 0.00 2.41
309 310 5.530519 TGCTGAGTTGAATTCGATGTTAC 57.469 39.130 0.00 0.00 0.00 2.50
310 311 5.237815 TGCTGAGTTGAATTCGATGTTACT 58.762 37.500 0.00 0.00 0.00 2.24
311 312 6.394809 TGCTGAGTTGAATTCGATGTTACTA 58.605 36.000 0.00 0.00 0.00 1.82
312 313 6.310467 TGCTGAGTTGAATTCGATGTTACTAC 59.690 38.462 0.00 0.00 0.00 2.73
313 314 6.237861 GCTGAGTTGAATTCGATGTTACTACC 60.238 42.308 0.00 0.00 0.00 3.18
314 315 5.803461 TGAGTTGAATTCGATGTTACTACCG 59.197 40.000 0.00 0.00 0.00 4.02
315 316 5.957798 AGTTGAATTCGATGTTACTACCGA 58.042 37.500 0.00 0.00 0.00 4.69
316 317 6.392354 AGTTGAATTCGATGTTACTACCGAA 58.608 36.000 0.00 0.00 43.69 4.30
317 318 6.530534 AGTTGAATTCGATGTTACTACCGAAG 59.469 38.462 0.00 0.00 42.97 3.79
318 319 5.957798 TGAATTCGATGTTACTACCGAAGT 58.042 37.500 0.04 0.00 42.97 3.01
319 320 6.392354 TGAATTCGATGTTACTACCGAAGTT 58.608 36.000 0.04 0.00 42.97 2.66
320 321 7.537715 TGAATTCGATGTTACTACCGAAGTTA 58.462 34.615 0.04 0.00 42.97 2.24
321 322 7.485913 TGAATTCGATGTTACTACCGAAGTTAC 59.514 37.037 0.04 0.00 42.97 2.50
322 323 6.500684 TTCGATGTTACTACCGAAGTTACT 57.499 37.500 0.00 0.00 39.80 2.24
323 324 6.111768 TCGATGTTACTACCGAAGTTACTC 57.888 41.667 8.00 4.02 39.80 2.59
324 325 5.065218 TCGATGTTACTACCGAAGTTACTCC 59.935 44.000 8.00 1.54 39.80 3.85
325 326 5.586339 GATGTTACTACCGAAGTTACTCCC 58.414 45.833 8.00 0.00 39.80 4.30
326 327 4.406456 TGTTACTACCGAAGTTACTCCCA 58.594 43.478 8.00 0.00 39.80 4.37
327 328 4.218417 TGTTACTACCGAAGTTACTCCCAC 59.782 45.833 8.00 0.00 39.80 4.61
328 329 2.174360 ACTACCGAAGTTACTCCCACC 58.826 52.381 0.00 0.00 33.35 4.61
329 330 1.133790 CTACCGAAGTTACTCCCACCG 59.866 57.143 0.00 0.00 0.00 4.94
330 331 0.829182 ACCGAAGTTACTCCCACCGT 60.829 55.000 0.00 0.00 0.00 4.83
331 332 0.389426 CCGAAGTTACTCCCACCGTG 60.389 60.000 0.00 0.00 0.00 4.94
332 333 0.389426 CGAAGTTACTCCCACCGTGG 60.389 60.000 10.95 10.95 37.25 4.94
333 334 0.672711 GAAGTTACTCCCACCGTGGC 60.673 60.000 12.54 0.00 35.79 5.01
334 335 1.125711 AAGTTACTCCCACCGTGGCT 61.126 55.000 12.54 0.00 35.79 4.75
335 336 0.251922 AGTTACTCCCACCGTGGCTA 60.252 55.000 12.54 1.41 35.79 3.93
336 337 0.175073 GTTACTCCCACCGTGGCTAG 59.825 60.000 12.54 13.32 35.79 3.42
337 338 0.251922 TTACTCCCACCGTGGCTAGT 60.252 55.000 21.14 21.14 35.79 2.57
338 339 0.682209 TACTCCCACCGTGGCTAGTC 60.682 60.000 21.05 0.00 35.79 2.59
339 340 1.682684 CTCCCACCGTGGCTAGTCT 60.683 63.158 12.54 0.00 35.79 3.24
340 341 1.229082 TCCCACCGTGGCTAGTCTT 60.229 57.895 12.54 0.00 35.79 3.01
341 342 0.834687 TCCCACCGTGGCTAGTCTTT 60.835 55.000 12.54 0.00 35.79 2.52
342 343 0.673644 CCCACCGTGGCTAGTCTTTG 60.674 60.000 12.54 0.00 35.79 2.77
343 344 1.298859 CCACCGTGGCTAGTCTTTGC 61.299 60.000 4.16 0.00 0.00 3.68
344 345 0.602638 CACCGTGGCTAGTCTTTGCA 60.603 55.000 0.00 0.00 0.00 4.08
345 346 0.324943 ACCGTGGCTAGTCTTTGCAT 59.675 50.000 0.00 0.00 0.00 3.96
346 347 1.271379 ACCGTGGCTAGTCTTTGCATT 60.271 47.619 0.00 0.00 0.00 3.56
347 348 1.131126 CCGTGGCTAGTCTTTGCATTG 59.869 52.381 0.00 0.00 0.00 2.82
348 349 1.131126 CGTGGCTAGTCTTTGCATTGG 59.869 52.381 0.00 0.00 0.00 3.16
349 350 2.436417 GTGGCTAGTCTTTGCATTGGA 58.564 47.619 0.00 0.00 0.00 3.53
350 351 2.819608 GTGGCTAGTCTTTGCATTGGAA 59.180 45.455 0.00 0.00 0.00 3.53
351 352 3.084039 TGGCTAGTCTTTGCATTGGAAG 58.916 45.455 0.00 0.00 0.00 3.46
352 353 3.244875 TGGCTAGTCTTTGCATTGGAAGA 60.245 43.478 0.00 0.00 0.00 2.87
353 354 3.376546 GGCTAGTCTTTGCATTGGAAGAG 59.623 47.826 0.00 0.00 32.91 2.85
354 355 3.376546 GCTAGTCTTTGCATTGGAAGAGG 59.623 47.826 0.00 0.00 32.91 3.69
355 356 3.515602 AGTCTTTGCATTGGAAGAGGT 57.484 42.857 0.00 0.00 32.91 3.85
356 357 3.416156 AGTCTTTGCATTGGAAGAGGTC 58.584 45.455 0.00 0.00 32.91 3.85
357 358 3.073650 AGTCTTTGCATTGGAAGAGGTCT 59.926 43.478 0.00 0.00 32.91 3.85
358 359 4.287067 AGTCTTTGCATTGGAAGAGGTCTA 59.713 41.667 0.00 0.00 32.91 2.59
359 360 5.003804 GTCTTTGCATTGGAAGAGGTCTAA 58.996 41.667 0.00 0.00 32.91 2.10
360 361 5.649831 GTCTTTGCATTGGAAGAGGTCTAAT 59.350 40.000 0.00 0.00 37.90 1.73
361 362 5.882557 TCTTTGCATTGGAAGAGGTCTAATC 59.117 40.000 0.00 0.00 35.38 1.75
362 363 4.156455 TGCATTGGAAGAGGTCTAATCC 57.844 45.455 0.00 0.00 35.38 3.01
363 364 3.134458 GCATTGGAAGAGGTCTAATCCG 58.866 50.000 0.00 0.00 35.38 4.18
364 365 3.181465 GCATTGGAAGAGGTCTAATCCGA 60.181 47.826 0.00 0.00 35.38 4.55
365 366 4.683400 GCATTGGAAGAGGTCTAATCCGAA 60.683 45.833 0.00 0.00 35.38 4.30
366 367 4.467198 TTGGAAGAGGTCTAATCCGAAC 57.533 45.455 0.00 0.00 34.60 3.95
367 368 3.437213 TGGAAGAGGTCTAATCCGAACA 58.563 45.455 0.00 0.00 34.60 3.18
368 369 3.447586 TGGAAGAGGTCTAATCCGAACAG 59.552 47.826 0.00 0.00 34.60 3.16
369 370 3.449632 GAAGAGGTCTAATCCGAACAGC 58.550 50.000 0.00 0.00 0.00 4.40
370 371 2.741145 AGAGGTCTAATCCGAACAGCT 58.259 47.619 0.00 0.00 0.00 4.24
371 372 3.899726 AGAGGTCTAATCCGAACAGCTA 58.100 45.455 0.00 0.00 0.00 3.32
372 373 3.633065 AGAGGTCTAATCCGAACAGCTAC 59.367 47.826 0.00 0.00 0.00 3.58
373 374 3.633065 GAGGTCTAATCCGAACAGCTACT 59.367 47.826 0.00 0.00 0.00 2.57
374 375 3.381908 AGGTCTAATCCGAACAGCTACTG 59.618 47.826 0.00 0.00 37.52 2.74
375 376 3.491104 GGTCTAATCCGAACAGCTACTGG 60.491 52.174 0.00 0.00 35.51 4.00
376 377 3.130693 GTCTAATCCGAACAGCTACTGGT 59.869 47.826 0.00 0.00 35.51 4.00
377 378 3.767673 TCTAATCCGAACAGCTACTGGTT 59.232 43.478 0.00 0.00 35.51 3.67
378 379 2.386661 ATCCGAACAGCTACTGGTTG 57.613 50.000 0.00 0.00 35.51 3.77
379 380 1.334160 TCCGAACAGCTACTGGTTGA 58.666 50.000 1.29 0.00 34.67 3.18
380 381 1.689813 TCCGAACAGCTACTGGTTGAA 59.310 47.619 1.29 0.00 34.67 2.69
381 382 1.798813 CCGAACAGCTACTGGTTGAAC 59.201 52.381 1.29 0.00 34.67 3.18
382 383 2.548067 CCGAACAGCTACTGGTTGAACT 60.548 50.000 1.29 0.00 34.67 3.01
383 384 2.731976 CGAACAGCTACTGGTTGAACTC 59.268 50.000 0.00 0.00 34.67 3.01
384 385 2.841442 ACAGCTACTGGTTGAACTCC 57.159 50.000 0.00 0.00 35.51 3.85
431 432 0.396435 ATTGACACTTGGACCGAGCA 59.604 50.000 8.84 0.00 0.00 4.26
459 460 1.930371 GCATTTTGACACCTGGCGTTC 60.930 52.381 0.00 0.00 0.00 3.95
463 464 3.414700 GACACCTGGCGTTCGCAG 61.415 66.667 18.46 12.89 0.00 5.18
491 492 0.037590 TGTCATTGCCCCAGGTACAC 59.962 55.000 0.00 0.00 0.00 2.90
493 494 1.136961 TCATTGCCCCAGGTACACCA 61.137 55.000 0.38 0.00 38.89 4.17
522 529 2.405172 GAGAAAACCTCGTGACTGGAC 58.595 52.381 0.00 0.00 31.32 4.02
526 533 1.111116 AACCTCGTGACTGGACCGAA 61.111 55.000 0.00 0.00 0.00 4.30
543 550 2.508867 CGAATCCGCAATGAACTTGTG 58.491 47.619 0.00 0.00 43.57 3.33
578 586 0.598065 AAAGTCCAGAAATGGTGCGC 59.402 50.000 0.00 0.00 0.00 6.09
634 643 2.553172 CAGACACTACCGCCTAGATACC 59.447 54.545 0.00 0.00 0.00 2.73
636 645 0.879765 CACTACCGCCTAGATACCGG 59.120 60.000 0.00 0.00 46.97 5.28
637 646 0.251077 ACTACCGCCTAGATACCGGG 60.251 60.000 6.32 0.00 45.93 5.73
640 649 3.692406 CGCCTAGATACCGGGCCC 61.692 72.222 13.57 13.57 42.58 5.80
764 773 1.007734 GCGTCAGACGAACACTCCA 60.008 57.895 27.29 0.00 46.05 3.86
814 823 2.431419 GGCTTCCACTACCTTCTAGACC 59.569 54.545 0.00 0.00 0.00 3.85
850 859 0.394565 CTCCCTCCTTCTTATGCCCG 59.605 60.000 0.00 0.00 0.00 6.13
855 864 2.203070 CTTCTTATGCCCGCCGCT 60.203 61.111 0.00 0.00 38.78 5.52
880 889 0.324645 GCCCCCAACACCATCAGAAT 60.325 55.000 0.00 0.00 0.00 2.40
881 890 1.767759 CCCCCAACACCATCAGAATC 58.232 55.000 0.00 0.00 0.00 2.52
882 891 1.686115 CCCCCAACACCATCAGAATCC 60.686 57.143 0.00 0.00 0.00 3.01
883 892 1.005805 CCCCAACACCATCAGAATCCA 59.994 52.381 0.00 0.00 0.00 3.41
884 893 2.372264 CCCAACACCATCAGAATCCAG 58.628 52.381 0.00 0.00 0.00 3.86
885 894 2.025981 CCCAACACCATCAGAATCCAGA 60.026 50.000 0.00 0.00 0.00 3.86
886 895 3.561960 CCCAACACCATCAGAATCCAGAA 60.562 47.826 0.00 0.00 0.00 3.02
887 896 3.441572 CCAACACCATCAGAATCCAGAAC 59.558 47.826 0.00 0.00 0.00 3.01
917 926 2.624838 CAGAGCAATCCCACAAACACTT 59.375 45.455 0.00 0.00 0.00 3.16
919 928 1.688197 AGCAATCCCACAAACACTTGG 59.312 47.619 0.00 0.00 36.82 3.61
920 929 1.412343 GCAATCCCACAAACACTTGGT 59.588 47.619 0.00 0.00 36.82 3.67
923 932 2.746279 TCCCACAAACACTTGGTGAT 57.254 45.000 4.62 0.00 36.96 3.06
924 933 2.582052 TCCCACAAACACTTGGTGATC 58.418 47.619 4.62 0.00 36.96 2.92
925 934 1.613437 CCCACAAACACTTGGTGATCC 59.387 52.381 4.62 0.00 36.96 3.36
926 935 1.613437 CCACAAACACTTGGTGATCCC 59.387 52.381 4.62 0.00 36.96 3.85
927 936 2.305928 CACAAACACTTGGTGATCCCA 58.694 47.619 4.62 0.00 43.27 4.37
961 976 3.208747 TCTTCCAACCCAAAGTCTGTC 57.791 47.619 0.00 0.00 0.00 3.51
962 977 2.777692 TCTTCCAACCCAAAGTCTGTCT 59.222 45.455 0.00 0.00 0.00 3.41
975 990 5.350504 AAGTCTGTCTGATCCATTGTAGG 57.649 43.478 0.00 0.00 0.00 3.18
976 991 4.357325 AGTCTGTCTGATCCATTGTAGGT 58.643 43.478 0.00 0.00 0.00 3.08
979 994 4.532126 TCTGTCTGATCCATTGTAGGTTGT 59.468 41.667 0.00 0.00 0.00 3.32
1866 1941 0.255318 AGATACACCTCGTCCTCGGT 59.745 55.000 0.00 0.00 37.69 4.69
3026 5941 4.114058 TCATTGCTGCATTCTTTTAGCC 57.886 40.909 1.84 0.00 35.36 3.93
3050 5965 6.270064 CGTAAACAAAGACTGAATTTGGGTT 58.730 36.000 11.79 8.70 41.05 4.11
3065 5980 5.993748 TTTGGGTTCTGATTTGGGATTAC 57.006 39.130 0.00 0.00 0.00 1.89
3321 6236 3.917760 CTCCTCGCCGGGATGGTC 61.918 72.222 2.18 0.00 41.21 4.02
3377 6292 4.060900 GTCATGCAGGAGGTATGTATGTG 58.939 47.826 0.00 0.00 40.41 3.21
3409 6324 3.055819 TCAATCTCCACTACAGAAGCACC 60.056 47.826 0.00 0.00 0.00 5.01
3410 6325 0.888619 TCTCCACTACAGAAGCACCG 59.111 55.000 0.00 0.00 0.00 4.94
3411 6326 0.888619 CTCCACTACAGAAGCACCGA 59.111 55.000 0.00 0.00 0.00 4.69
3413 6328 1.204704 TCCACTACAGAAGCACCGATG 59.795 52.381 0.00 0.00 0.00 3.84
3414 6329 1.066858 CCACTACAGAAGCACCGATGT 60.067 52.381 0.00 0.00 0.00 3.06
3415 6330 2.165641 CCACTACAGAAGCACCGATGTA 59.834 50.000 0.00 0.00 0.00 2.29
3453 6368 1.195448 GATGCTGAACTTCGTGTGTGG 59.805 52.381 0.00 0.00 0.00 4.17
3461 6379 0.248054 CTTCGTGTGTGGTTGTGTGC 60.248 55.000 0.00 0.00 0.00 4.57
3673 6591 2.286872 CCTACGATCCAGTACGTGACT 58.713 52.381 0.00 0.00 42.61 3.41
3683 6601 2.724454 AGTACGTGACTGCATCCTACT 58.276 47.619 0.00 0.00 36.87 2.57
3684 6602 3.882444 AGTACGTGACTGCATCCTACTA 58.118 45.455 0.00 0.00 36.87 1.82
3686 6604 2.724454 ACGTGACTGCATCCTACTACT 58.276 47.619 0.00 0.00 0.00 2.57
3687 6605 3.882444 ACGTGACTGCATCCTACTACTA 58.118 45.455 0.00 0.00 0.00 1.82
3688 6606 4.267536 ACGTGACTGCATCCTACTACTAA 58.732 43.478 0.00 0.00 0.00 2.24
3689 6607 4.703575 ACGTGACTGCATCCTACTACTAAA 59.296 41.667 0.00 0.00 0.00 1.85
3691 6609 6.127423 ACGTGACTGCATCCTACTACTAAATT 60.127 38.462 0.00 0.00 0.00 1.82
3694 6612 7.982354 GTGACTGCATCCTACTACTAAATTTCT 59.018 37.037 0.00 0.00 0.00 2.52
3696 6614 8.079211 ACTGCATCCTACTACTAAATTTCTGA 57.921 34.615 0.00 0.00 0.00 3.27
3697 6615 8.709308 ACTGCATCCTACTACTAAATTTCTGAT 58.291 33.333 0.00 0.00 0.00 2.90
3698 6616 9.553064 CTGCATCCTACTACTAAATTTCTGATT 57.447 33.333 0.00 0.00 0.00 2.57
3787 6720 0.103937 CAGGAGGTGGATCGAGAAGC 59.896 60.000 0.00 0.00 0.00 3.86
4017 6956 2.009042 GCCGTGAAGAAGATGAGGGTG 61.009 57.143 0.00 0.00 0.00 4.61
4064 7003 2.632996 TGGACGAGGATGTTTGAACTCT 59.367 45.455 0.00 0.00 0.00 3.24
4075 7014 5.895636 TGTTTGAACTCTTGAAGCTGAAA 57.104 34.783 0.00 0.00 0.00 2.69
4104 7044 0.742281 CTGAAGTGCCTGTCGGATGG 60.742 60.000 0.00 0.00 0.00 3.51
4112 7052 0.321671 CCTGTCGGATGGAGTGTGTT 59.678 55.000 0.00 0.00 0.00 3.32
4187 7164 2.143925 CGGCTTCGGGAATAATCTTCC 58.856 52.381 0.00 0.00 37.86 3.46
4207 7184 3.621268 TCCTTCTGTGTTTTTGTGAGTCG 59.379 43.478 0.00 0.00 0.00 4.18
4404 7382 5.301805 AGTCACTGAAATTCGAATTTGGGTT 59.698 36.000 34.35 15.31 38.64 4.11
4405 7383 5.402270 GTCACTGAAATTCGAATTTGGGTTG 59.598 40.000 34.35 24.37 38.64 3.77
4415 7393 3.672867 CGAATTTGGGTTGGTTGAATTCG 59.327 43.478 12.96 12.96 46.67 3.34
4453 7433 3.878160 GTCGGAGATGAAGAAGGAAGT 57.122 47.619 0.00 0.00 40.67 3.01
4454 7434 3.776340 GTCGGAGATGAAGAAGGAAGTC 58.224 50.000 0.00 0.00 40.67 3.01
4456 7436 2.164624 CGGAGATGAAGAAGGAAGTCGT 59.835 50.000 0.00 0.00 0.00 4.34
4457 7437 3.732471 CGGAGATGAAGAAGGAAGTCGTC 60.732 52.174 0.00 0.00 0.00 4.20
4458 7438 3.445805 GGAGATGAAGAAGGAAGTCGTCT 59.554 47.826 0.00 0.00 39.73 4.18
4459 7439 4.439563 GGAGATGAAGAAGGAAGTCGTCTC 60.440 50.000 11.85 11.85 46.71 3.36
4460 7440 4.340617 AGATGAAGAAGGAAGTCGTCTCT 58.659 43.478 0.00 0.00 33.32 3.10
4461 7441 4.770010 AGATGAAGAAGGAAGTCGTCTCTT 59.230 41.667 0.00 0.00 33.32 2.85
4462 7442 5.946972 AGATGAAGAAGGAAGTCGTCTCTTA 59.053 40.000 0.00 0.00 33.32 2.10
4463 7443 5.373981 TGAAGAAGGAAGTCGTCTCTTAC 57.626 43.478 0.00 0.00 33.12 2.34
4473 7495 1.595357 GTCTCTTACGTGGGGTGGG 59.405 63.158 0.00 0.00 0.00 4.61
4474 7496 2.267961 CTCTTACGTGGGGTGGGC 59.732 66.667 0.00 0.00 0.00 5.36
4514 7970 3.372060 GTTGAAGAAAGGGTTTTCAGCG 58.628 45.455 3.21 0.00 44.14 5.18
4683 8268 7.601073 TGAGCAATAGTCACTAGTCATTTTG 57.399 36.000 0.00 0.00 0.00 2.44
4724 8309 9.750125 GACATGTTAAGAAACTTTGGAAATTCT 57.250 29.630 0.00 0.00 36.51 2.40
4863 8449 2.107204 AGCTTCCTGGACTGTTTCACAT 59.893 45.455 0.00 0.00 0.00 3.21
4868 8454 3.136443 TCCTGGACTGTTTCACATTGACT 59.864 43.478 0.00 0.00 0.00 3.41
4883 8470 5.183713 CACATTGACTTAGGGCAAAAGATGA 59.816 40.000 0.00 0.00 0.00 2.92
4938 8526 3.857052 ACTATTGGTACACATGTCCGTG 58.143 45.455 0.00 0.00 39.29 4.94
4939 8527 1.448985 ATTGGTACACATGTCCGTGC 58.551 50.000 0.00 0.00 40.73 5.34
4941 8529 1.373748 GGTACACATGTCCGTGCGT 60.374 57.895 0.00 0.00 40.73 5.24
5001 8589 7.779754 TGCCATTATGCACCATTTTATATCT 57.220 32.000 0.00 0.00 36.04 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.513906 TCTTGTTTCTTGACATATCAACCAATA 57.486 29.630 0.00 0.00 40.01 1.90
1 2 8.408043 TCTTGTTTCTTGACATATCAACCAAT 57.592 30.769 0.00 0.00 40.01 3.16
2 3 7.815840 TCTTGTTTCTTGACATATCAACCAA 57.184 32.000 0.00 0.00 40.01 3.67
3 4 7.522073 GCTTCTTGTTTCTTGACATATCAACCA 60.522 37.037 0.00 0.00 40.01 3.67
4 5 6.803807 GCTTCTTGTTTCTTGACATATCAACC 59.196 38.462 0.00 0.00 40.01 3.77
5 6 6.521133 CGCTTCTTGTTTCTTGACATATCAAC 59.479 38.462 0.00 0.00 40.01 3.18
6 7 6.426633 TCGCTTCTTGTTTCTTGACATATCAA 59.573 34.615 0.00 0.00 42.73 2.57
7 8 5.931724 TCGCTTCTTGTTTCTTGACATATCA 59.068 36.000 0.00 0.00 0.00 2.15
8 9 6.408858 TCGCTTCTTGTTTCTTGACATATC 57.591 37.500 0.00 0.00 0.00 1.63
9 10 6.372659 ACATCGCTTCTTGTTTCTTGACATAT 59.627 34.615 0.00 0.00 0.00 1.78
10 11 5.700832 ACATCGCTTCTTGTTTCTTGACATA 59.299 36.000 0.00 0.00 0.00 2.29
11 12 4.516698 ACATCGCTTCTTGTTTCTTGACAT 59.483 37.500 0.00 0.00 0.00 3.06
12 13 3.876914 ACATCGCTTCTTGTTTCTTGACA 59.123 39.130 0.00 0.00 0.00 3.58
13 14 4.474226 ACATCGCTTCTTGTTTCTTGAC 57.526 40.909 0.00 0.00 0.00 3.18
14 15 5.538118 TCTACATCGCTTCTTGTTTCTTGA 58.462 37.500 0.00 0.00 0.00 3.02
15 16 5.845985 TCTACATCGCTTCTTGTTTCTTG 57.154 39.130 0.00 0.00 0.00 3.02
16 17 7.440523 AATTCTACATCGCTTCTTGTTTCTT 57.559 32.000 0.00 0.00 0.00 2.52
17 18 7.440523 AAATTCTACATCGCTTCTTGTTTCT 57.559 32.000 0.00 0.00 0.00 2.52
18 19 9.774742 ATTAAATTCTACATCGCTTCTTGTTTC 57.225 29.630 0.00 0.00 0.00 2.78
19 20 9.559958 CATTAAATTCTACATCGCTTCTTGTTT 57.440 29.630 0.00 0.00 0.00 2.83
20 21 7.698130 GCATTAAATTCTACATCGCTTCTTGTT 59.302 33.333 0.00 0.00 0.00 2.83
21 22 7.148255 TGCATTAAATTCTACATCGCTTCTTGT 60.148 33.333 0.00 0.00 0.00 3.16
22 23 7.188834 TGCATTAAATTCTACATCGCTTCTTG 58.811 34.615 0.00 0.00 0.00 3.02
23 24 7.320443 TGCATTAAATTCTACATCGCTTCTT 57.680 32.000 0.00 0.00 0.00 2.52
24 25 6.925610 TGCATTAAATTCTACATCGCTTCT 57.074 33.333 0.00 0.00 0.00 2.85
25 26 6.517714 CGATGCATTAAATTCTACATCGCTTC 59.482 38.462 0.00 0.00 46.73 3.86
26 27 6.365839 CGATGCATTAAATTCTACATCGCTT 58.634 36.000 0.00 0.00 46.73 4.68
27 28 5.920312 CGATGCATTAAATTCTACATCGCT 58.080 37.500 0.00 0.00 46.73 4.93
30 31 4.551126 GCGCGATGCATTAAATTCTACATC 59.449 41.667 12.10 0.00 45.45 3.06
31 32 4.466828 GCGCGATGCATTAAATTCTACAT 58.533 39.130 12.10 0.00 45.45 2.29
32 33 3.872354 GCGCGATGCATTAAATTCTACA 58.128 40.909 12.10 0.00 45.45 2.74
45 46 2.747507 AAAACACTTGGGCGCGATGC 62.748 55.000 12.10 0.00 45.38 3.91
46 47 1.003262 CAAAACACTTGGGCGCGATG 61.003 55.000 12.10 0.00 0.00 3.84
47 48 1.285641 CAAAACACTTGGGCGCGAT 59.714 52.632 12.10 0.00 0.00 4.58
48 49 2.718731 CAAAACACTTGGGCGCGA 59.281 55.556 12.10 0.00 0.00 5.87
49 50 2.354539 CCAAAACACTTGGGCGCG 60.355 61.111 0.00 0.00 35.96 6.86
54 55 8.620116 AAATCAAATAATCCCAAAACACTTGG 57.380 30.769 0.00 0.00 39.25 3.61
57 58 8.987890 CGAAAAATCAAATAATCCCAAAACACT 58.012 29.630 0.00 0.00 0.00 3.55
58 59 8.769891 ACGAAAAATCAAATAATCCCAAAACAC 58.230 29.630 0.00 0.00 0.00 3.32
59 60 8.894768 ACGAAAAATCAAATAATCCCAAAACA 57.105 26.923 0.00 0.00 0.00 2.83
82 83 9.720809 CCGTCTAGGTGTGTAAGTCATCTTACG 62.721 48.148 11.67 0.00 44.84 3.18
83 84 6.677431 CCGTCTAGGTGTGTAAGTCATCTTAC 60.677 46.154 10.12 10.12 43.75 2.34
84 85 5.356190 CCGTCTAGGTGTGTAAGTCATCTTA 59.644 44.000 0.00 0.00 33.66 2.10
85 86 4.158025 CCGTCTAGGTGTGTAAGTCATCTT 59.842 45.833 0.00 0.00 35.02 2.40
86 87 3.695060 CCGTCTAGGTGTGTAAGTCATCT 59.305 47.826 0.00 0.00 34.51 2.90
87 88 3.693085 TCCGTCTAGGTGTGTAAGTCATC 59.307 47.826 0.00 0.00 41.99 2.92
88 89 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
89 90 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
90 91 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
91 92 2.040813 TCCTCCGTCTAGGTGTGTAAGT 59.959 50.000 0.00 0.00 41.99 2.24
92 93 2.719739 TCCTCCGTCTAGGTGTGTAAG 58.280 52.381 0.00 0.00 41.99 2.34
93 94 2.885135 TCCTCCGTCTAGGTGTGTAA 57.115 50.000 0.00 0.00 41.99 2.41
94 95 2.040813 ACTTCCTCCGTCTAGGTGTGTA 59.959 50.000 0.00 0.00 41.99 2.90
95 96 1.203025 ACTTCCTCCGTCTAGGTGTGT 60.203 52.381 0.00 0.00 41.99 3.72
96 97 1.546961 ACTTCCTCCGTCTAGGTGTG 58.453 55.000 0.00 0.00 41.99 3.82
97 98 2.308275 ACTACTTCCTCCGTCTAGGTGT 59.692 50.000 0.00 0.00 41.99 4.16
98 99 3.002038 ACTACTTCCTCCGTCTAGGTG 57.998 52.381 0.00 0.00 41.99 4.00
99 100 4.018960 TGTTACTACTTCCTCCGTCTAGGT 60.019 45.833 0.00 0.00 41.99 3.08
100 101 4.521146 TGTTACTACTTCCTCCGTCTAGG 58.479 47.826 0.00 0.00 42.97 3.02
101 102 6.765036 TGTATGTTACTACTTCCTCCGTCTAG 59.235 42.308 0.00 0.00 0.00 2.43
102 103 6.540189 GTGTATGTTACTACTTCCTCCGTCTA 59.460 42.308 0.00 0.00 0.00 2.59
103 104 5.356470 GTGTATGTTACTACTTCCTCCGTCT 59.644 44.000 0.00 0.00 0.00 4.18
104 105 5.124457 TGTGTATGTTACTACTTCCTCCGTC 59.876 44.000 0.00 0.00 0.00 4.79
105 106 5.012239 TGTGTATGTTACTACTTCCTCCGT 58.988 41.667 0.00 0.00 0.00 4.69
106 107 5.571784 TGTGTATGTTACTACTTCCTCCG 57.428 43.478 0.00 0.00 0.00 4.63
107 108 9.694137 GAATATGTGTATGTTACTACTTCCTCC 57.306 37.037 0.00 0.00 0.00 4.30
108 109 9.694137 GGAATATGTGTATGTTACTACTTCCTC 57.306 37.037 0.00 0.00 0.00 3.71
109 110 9.435570 AGGAATATGTGTATGTTACTACTTCCT 57.564 33.333 0.00 0.00 34.31 3.36
130 131 9.884814 ATTGAGGTAGTAACATAGTCTAGGAAT 57.115 33.333 0.00 0.00 0.00 3.01
133 134 9.796180 ACTATTGAGGTAGTAACATAGTCTAGG 57.204 37.037 0.00 0.00 33.29 3.02
135 136 9.570468 CCACTATTGAGGTAGTAACATAGTCTA 57.430 37.037 0.00 0.00 33.29 2.59
136 137 7.506261 CCCACTATTGAGGTAGTAACATAGTCT 59.494 40.741 0.00 0.00 33.29 3.24
137 138 7.287235 ACCCACTATTGAGGTAGTAACATAGTC 59.713 40.741 0.00 0.00 33.29 2.59
138 139 7.130775 ACCCACTATTGAGGTAGTAACATAGT 58.869 38.462 0.00 0.00 33.29 2.12
139 140 7.598759 ACCCACTATTGAGGTAGTAACATAG 57.401 40.000 0.00 0.00 33.29 2.23
140 141 8.701908 CTACCCACTATTGAGGTAGTAACATA 57.298 38.462 14.91 0.00 45.39 2.29
141 142 7.598759 CTACCCACTATTGAGGTAGTAACAT 57.401 40.000 14.91 0.00 45.39 2.71
148 149 9.139734 CTTATGTTACTACCCACTATTGAGGTA 57.860 37.037 0.00 0.00 35.02 3.08
149 150 7.622479 ACTTATGTTACTACCCACTATTGAGGT 59.378 37.037 0.00 0.00 37.69 3.85
150 151 7.926555 CACTTATGTTACTACCCACTATTGAGG 59.073 40.741 0.00 0.00 0.00 3.86
151 152 8.475639 ACACTTATGTTACTACCCACTATTGAG 58.524 37.037 0.00 0.00 34.46 3.02
152 153 8.255206 CACACTTATGTTACTACCCACTATTGA 58.745 37.037 0.00 0.00 36.72 2.57
153 154 7.494625 CCACACTTATGTTACTACCCACTATTG 59.505 40.741 0.00 0.00 36.72 1.90
154 155 7.181485 ACCACACTTATGTTACTACCCACTATT 59.819 37.037 0.00 0.00 36.72 1.73
155 156 6.670902 ACCACACTTATGTTACTACCCACTAT 59.329 38.462 0.00 0.00 36.72 2.12
156 157 6.018469 ACCACACTTATGTTACTACCCACTA 58.982 40.000 0.00 0.00 36.72 2.74
157 158 4.842380 ACCACACTTATGTTACTACCCACT 59.158 41.667 0.00 0.00 36.72 4.00
158 159 5.156608 ACCACACTTATGTTACTACCCAC 57.843 43.478 0.00 0.00 36.72 4.61
159 160 6.269538 TGTTACCACACTTATGTTACTACCCA 59.730 38.462 0.00 0.00 36.72 4.51
160 161 6.700352 TGTTACCACACTTATGTTACTACCC 58.300 40.000 0.00 0.00 36.72 3.69
161 162 9.874205 TTATGTTACCACACTTATGTTACTACC 57.126 33.333 0.00 0.00 36.72 3.18
164 165 9.431887 CACTTATGTTACCACACTTATGTTACT 57.568 33.333 0.00 0.00 36.72 2.24
165 166 9.211485 ACACTTATGTTACCACACTTATGTTAC 57.789 33.333 0.00 0.00 33.54 2.50
166 167 9.210329 CACACTTATGTTACCACACTTATGTTA 57.790 33.333 0.00 0.00 34.73 2.41
167 168 7.174253 CCACACTTATGTTACCACACTTATGTT 59.826 37.037 0.00 0.00 34.73 2.71
168 169 6.653320 CCACACTTATGTTACCACACTTATGT 59.347 38.462 0.00 0.00 36.72 2.29
169 170 6.653320 ACCACACTTATGTTACCACACTTATG 59.347 38.462 0.00 0.00 36.72 1.90
170 171 6.775708 ACCACACTTATGTTACCACACTTAT 58.224 36.000 0.00 0.00 36.72 1.73
171 172 6.177310 ACCACACTTATGTTACCACACTTA 57.823 37.500 0.00 0.00 36.72 2.24
172 173 5.043737 ACCACACTTATGTTACCACACTT 57.956 39.130 0.00 0.00 36.72 3.16
173 174 4.699925 ACCACACTTATGTTACCACACT 57.300 40.909 0.00 0.00 36.72 3.55
174 175 8.726870 ATATTACCACACTTATGTTACCACAC 57.273 34.615 0.00 0.00 36.72 3.82
175 176 9.168451 CAATATTACCACACTTATGTTACCACA 57.832 33.333 0.00 0.00 36.72 4.17
176 177 8.126700 GCAATATTACCACACTTATGTTACCAC 58.873 37.037 0.00 0.00 36.72 4.16
177 178 7.829706 TGCAATATTACCACACTTATGTTACCA 59.170 33.333 0.00 0.00 36.72 3.25
178 179 8.215926 TGCAATATTACCACACTTATGTTACC 57.784 34.615 0.00 0.00 36.72 2.85
181 182 8.196771 CCAATGCAATATTACCACACTTATGTT 58.803 33.333 0.00 0.00 36.72 2.71
182 183 7.201902 CCCAATGCAATATTACCACACTTATGT 60.202 37.037 0.00 0.00 40.80 2.29
183 184 7.014134 TCCCAATGCAATATTACCACACTTATG 59.986 37.037 0.00 0.00 0.00 1.90
184 185 7.014230 GTCCCAATGCAATATTACCACACTTAT 59.986 37.037 0.00 0.00 0.00 1.73
185 186 6.320164 GTCCCAATGCAATATTACCACACTTA 59.680 38.462 0.00 0.00 0.00 2.24
186 187 5.127031 GTCCCAATGCAATATTACCACACTT 59.873 40.000 0.00 0.00 0.00 3.16
187 188 4.644685 GTCCCAATGCAATATTACCACACT 59.355 41.667 0.00 0.00 0.00 3.55
188 189 4.400884 TGTCCCAATGCAATATTACCACAC 59.599 41.667 0.00 0.00 0.00 3.82
189 190 4.604156 TGTCCCAATGCAATATTACCACA 58.396 39.130 0.00 0.00 0.00 4.17
190 191 5.068987 ACATGTCCCAATGCAATATTACCAC 59.931 40.000 0.00 0.00 0.00 4.16
191 192 5.068855 CACATGTCCCAATGCAATATTACCA 59.931 40.000 0.00 0.00 0.00 3.25
192 193 5.301551 TCACATGTCCCAATGCAATATTACC 59.698 40.000 0.00 0.00 0.00 2.85
193 194 6.389830 TCACATGTCCCAATGCAATATTAC 57.610 37.500 0.00 0.00 0.00 1.89
194 195 6.550481 ACATCACATGTCCCAATGCAATATTA 59.450 34.615 0.00 0.00 39.92 0.98
195 196 5.364446 ACATCACATGTCCCAATGCAATATT 59.636 36.000 0.00 0.00 39.92 1.28
196 197 4.897076 ACATCACATGTCCCAATGCAATAT 59.103 37.500 0.00 0.00 39.92 1.28
197 198 4.279982 ACATCACATGTCCCAATGCAATA 58.720 39.130 0.00 0.00 39.92 1.90
198 199 3.101437 ACATCACATGTCCCAATGCAAT 58.899 40.909 0.00 0.00 39.92 3.56
199 200 2.527497 ACATCACATGTCCCAATGCAA 58.473 42.857 0.00 0.00 39.92 4.08
200 201 2.219080 ACATCACATGTCCCAATGCA 57.781 45.000 0.00 0.00 39.92 3.96
201 202 3.443329 TGTAACATCACATGTCCCAATGC 59.557 43.478 0.00 0.00 44.07 3.56
202 203 4.701651 ACTGTAACATCACATGTCCCAATG 59.298 41.667 0.00 0.45 44.07 2.82
203 204 4.922206 ACTGTAACATCACATGTCCCAAT 58.078 39.130 0.00 0.00 44.07 3.16
204 205 4.365514 ACTGTAACATCACATGTCCCAA 57.634 40.909 0.00 0.00 44.07 4.12
205 206 5.012664 AGTTACTGTAACATCACATGTCCCA 59.987 40.000 27.12 0.00 44.07 4.37
206 207 5.488341 AGTTACTGTAACATCACATGTCCC 58.512 41.667 27.12 1.55 44.07 4.46
207 208 6.255887 GCTAGTTACTGTAACATCACATGTCC 59.744 42.308 27.12 1.73 44.07 4.02
208 209 7.036220 AGCTAGTTACTGTAACATCACATGTC 58.964 38.462 27.12 9.51 44.07 3.06
210 211 8.926715 TTAGCTAGTTACTGTAACATCACATG 57.073 34.615 27.12 12.57 41.07 3.21
211 212 8.750298 ACTTAGCTAGTTACTGTAACATCACAT 58.250 33.333 27.12 11.85 41.07 3.21
212 213 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
213 214 8.983307 AACTTAGCTAGTTACTGTAACATCAC 57.017 34.615 27.12 15.70 45.22 3.06
230 231 9.260002 GAGAGACGTAATACTAGTAACTTAGCT 57.740 37.037 6.70 0.00 0.00 3.32
231 232 8.495148 GGAGAGACGTAATACTAGTAACTTAGC 58.505 40.741 6.70 0.00 0.00 3.09
232 233 9.539825 TGGAGAGACGTAATACTAGTAACTTAG 57.460 37.037 6.70 0.95 0.00 2.18
233 234 9.319143 GTGGAGAGACGTAATACTAGTAACTTA 57.681 37.037 6.70 0.00 0.00 2.24
234 235 7.826252 TGTGGAGAGACGTAATACTAGTAACTT 59.174 37.037 6.70 0.20 0.00 2.66
235 236 7.334090 TGTGGAGAGACGTAATACTAGTAACT 58.666 38.462 6.70 0.00 0.00 2.24
236 237 7.545362 TGTGGAGAGACGTAATACTAGTAAC 57.455 40.000 6.70 0.52 0.00 2.50
237 238 8.743085 AATGTGGAGAGACGTAATACTAGTAA 57.257 34.615 6.70 0.00 0.00 2.24
238 239 9.836864 TTAATGTGGAGAGACGTAATACTAGTA 57.163 33.333 4.77 4.77 0.00 1.82
239 240 8.619546 GTTAATGTGGAGAGACGTAATACTAGT 58.380 37.037 0.00 0.00 0.00 2.57
240 241 8.838365 AGTTAATGTGGAGAGACGTAATACTAG 58.162 37.037 0.00 0.00 0.00 2.57
241 242 8.743085 AGTTAATGTGGAGAGACGTAATACTA 57.257 34.615 0.00 0.00 0.00 1.82
242 243 7.338703 TGAGTTAATGTGGAGAGACGTAATACT 59.661 37.037 0.00 0.00 0.00 2.12
243 244 7.431668 GTGAGTTAATGTGGAGAGACGTAATAC 59.568 40.741 0.00 0.00 0.00 1.89
244 245 7.338703 AGTGAGTTAATGTGGAGAGACGTAATA 59.661 37.037 0.00 0.00 0.00 0.98
245 246 6.153000 AGTGAGTTAATGTGGAGAGACGTAAT 59.847 38.462 0.00 0.00 0.00 1.89
246 247 5.475909 AGTGAGTTAATGTGGAGAGACGTAA 59.524 40.000 0.00 0.00 0.00 3.18
247 248 5.008331 AGTGAGTTAATGTGGAGAGACGTA 58.992 41.667 0.00 0.00 0.00 3.57
248 249 3.827302 AGTGAGTTAATGTGGAGAGACGT 59.173 43.478 0.00 0.00 0.00 4.34
249 250 4.169508 CAGTGAGTTAATGTGGAGAGACG 58.830 47.826 0.00 0.00 0.00 4.18
250 251 5.140747 ACAGTGAGTTAATGTGGAGAGAC 57.859 43.478 0.00 0.00 36.04 3.36
251 252 4.832823 TGACAGTGAGTTAATGTGGAGAGA 59.167 41.667 0.00 0.00 37.79 3.10
252 253 5.139435 TGACAGTGAGTTAATGTGGAGAG 57.861 43.478 0.00 0.00 37.79 3.20
253 254 5.745312 ATGACAGTGAGTTAATGTGGAGA 57.255 39.130 0.00 0.00 37.79 3.71
254 255 9.599866 TTTATATGACAGTGAGTTAATGTGGAG 57.400 33.333 0.00 0.00 37.79 3.86
255 256 9.378551 GTTTATATGACAGTGAGTTAATGTGGA 57.621 33.333 0.00 0.00 37.79 4.02
256 257 9.161629 TGTTTATATGACAGTGAGTTAATGTGG 57.838 33.333 0.00 0.00 37.79 4.17
263 264 9.410556 GCAAATTTGTTTATATGACAGTGAGTT 57.589 29.630 19.03 0.00 0.00 3.01
264 265 8.796475 AGCAAATTTGTTTATATGACAGTGAGT 58.204 29.630 19.03 0.00 0.00 3.41
265 266 9.069078 CAGCAAATTTGTTTATATGACAGTGAG 57.931 33.333 19.03 0.00 0.00 3.51
266 267 8.791675 TCAGCAAATTTGTTTATATGACAGTGA 58.208 29.630 19.03 0.36 0.00 3.41
267 268 8.969121 TCAGCAAATTTGTTTATATGACAGTG 57.031 30.769 19.03 0.00 0.00 3.66
268 269 8.796475 ACTCAGCAAATTTGTTTATATGACAGT 58.204 29.630 19.03 7.15 0.00 3.55
269 270 9.630098 AACTCAGCAAATTTGTTTATATGACAG 57.370 29.630 19.03 0.00 0.00 3.51
270 271 9.409312 CAACTCAGCAAATTTGTTTATATGACA 57.591 29.630 19.03 0.00 0.00 3.58
271 272 9.624697 TCAACTCAGCAAATTTGTTTATATGAC 57.375 29.630 19.03 0.00 0.00 3.06
276 277 8.702438 CGAATTCAACTCAGCAAATTTGTTTAT 58.298 29.630 19.03 1.31 0.00 1.40
277 278 7.918033 TCGAATTCAACTCAGCAAATTTGTTTA 59.082 29.630 19.03 4.48 0.00 2.01
278 279 6.756074 TCGAATTCAACTCAGCAAATTTGTTT 59.244 30.769 19.03 5.85 0.00 2.83
279 280 6.272318 TCGAATTCAACTCAGCAAATTTGTT 58.728 32.000 19.03 10.93 0.00 2.83
280 281 5.830912 TCGAATTCAACTCAGCAAATTTGT 58.169 33.333 19.03 3.98 0.00 2.83
281 282 6.364165 ACATCGAATTCAACTCAGCAAATTTG 59.636 34.615 14.03 14.03 0.00 2.32
282 283 6.449698 ACATCGAATTCAACTCAGCAAATTT 58.550 32.000 6.22 0.00 0.00 1.82
283 284 6.017400 ACATCGAATTCAACTCAGCAAATT 57.983 33.333 6.22 0.00 0.00 1.82
284 285 5.633830 ACATCGAATTCAACTCAGCAAAT 57.366 34.783 6.22 0.00 0.00 2.32
285 286 5.437289 AACATCGAATTCAACTCAGCAAA 57.563 34.783 6.22 0.00 0.00 3.68
286 287 5.700832 AGTAACATCGAATTCAACTCAGCAA 59.299 36.000 6.22 0.00 0.00 3.91
287 288 5.237815 AGTAACATCGAATTCAACTCAGCA 58.762 37.500 6.22 0.00 0.00 4.41
288 289 5.786401 AGTAACATCGAATTCAACTCAGC 57.214 39.130 6.22 0.00 0.00 4.26
289 290 6.020599 CGGTAGTAACATCGAATTCAACTCAG 60.021 42.308 6.22 0.00 0.00 3.35
290 291 5.803461 CGGTAGTAACATCGAATTCAACTCA 59.197 40.000 6.22 0.00 0.00 3.41
291 292 6.032094 TCGGTAGTAACATCGAATTCAACTC 58.968 40.000 6.22 0.00 0.00 3.01
292 293 5.957798 TCGGTAGTAACATCGAATTCAACT 58.042 37.500 6.22 1.79 0.00 3.16
293 294 6.309737 ACTTCGGTAGTAACATCGAATTCAAC 59.690 38.462 6.22 0.00 40.17 3.18
294 295 6.392354 ACTTCGGTAGTAACATCGAATTCAA 58.608 36.000 6.22 0.00 40.17 2.69
295 296 5.957798 ACTTCGGTAGTAACATCGAATTCA 58.042 37.500 6.22 0.00 40.17 2.57
296 297 6.882458 AACTTCGGTAGTAACATCGAATTC 57.118 37.500 0.00 0.00 40.17 2.17
297 298 7.542025 AGTAACTTCGGTAGTAACATCGAATT 58.458 34.615 0.00 0.00 40.17 2.17
298 299 7.093322 AGTAACTTCGGTAGTAACATCGAAT 57.907 36.000 0.00 0.00 40.17 3.34
299 300 6.403636 GGAGTAACTTCGGTAGTAACATCGAA 60.404 42.308 0.00 0.00 38.96 3.71
300 301 5.065218 GGAGTAACTTCGGTAGTAACATCGA 59.935 44.000 0.00 0.00 35.54 3.59
301 302 5.269313 GGAGTAACTTCGGTAGTAACATCG 58.731 45.833 0.00 0.00 35.54 3.84
302 303 5.126061 TGGGAGTAACTTCGGTAGTAACATC 59.874 44.000 0.00 0.00 35.54 3.06
303 304 5.018809 TGGGAGTAACTTCGGTAGTAACAT 58.981 41.667 0.00 0.00 35.54 2.71
304 305 4.218417 GTGGGAGTAACTTCGGTAGTAACA 59.782 45.833 0.00 0.00 35.54 2.41
305 306 4.380973 GGTGGGAGTAACTTCGGTAGTAAC 60.381 50.000 0.00 0.00 35.54 2.50
306 307 3.763897 GGTGGGAGTAACTTCGGTAGTAA 59.236 47.826 0.00 0.00 35.54 2.24
307 308 3.356290 GGTGGGAGTAACTTCGGTAGTA 58.644 50.000 0.00 0.00 35.54 1.82
308 309 2.174360 GGTGGGAGTAACTTCGGTAGT 58.826 52.381 0.00 0.00 39.32 2.73
309 310 1.133790 CGGTGGGAGTAACTTCGGTAG 59.866 57.143 0.00 0.00 0.00 3.18
310 311 1.176527 CGGTGGGAGTAACTTCGGTA 58.823 55.000 0.00 0.00 0.00 4.02
311 312 0.829182 ACGGTGGGAGTAACTTCGGT 60.829 55.000 0.00 0.00 0.00 4.69
312 313 0.389426 CACGGTGGGAGTAACTTCGG 60.389 60.000 0.00 0.00 0.00 4.30
313 314 0.389426 CCACGGTGGGAGTAACTTCG 60.389 60.000 19.63 0.00 32.67 3.79
314 315 0.672711 GCCACGGTGGGAGTAACTTC 60.673 60.000 27.41 4.68 38.19 3.01
315 316 1.125711 AGCCACGGTGGGAGTAACTT 61.126 55.000 27.41 0.00 38.19 2.66
316 317 0.251922 TAGCCACGGTGGGAGTAACT 60.252 55.000 27.41 16.78 38.19 2.24
317 318 0.175073 CTAGCCACGGTGGGAGTAAC 59.825 60.000 27.41 10.41 38.19 2.50
318 319 0.251922 ACTAGCCACGGTGGGAGTAA 60.252 55.000 27.41 0.00 38.19 2.24
319 320 0.682209 GACTAGCCACGGTGGGAGTA 60.682 60.000 27.41 4.65 38.19 2.59
320 321 1.982938 GACTAGCCACGGTGGGAGT 60.983 63.158 27.41 9.38 38.19 3.85
321 322 1.258445 AAGACTAGCCACGGTGGGAG 61.258 60.000 27.41 3.91 38.19 4.30
322 323 0.834687 AAAGACTAGCCACGGTGGGA 60.835 55.000 27.41 0.00 38.19 4.37
323 324 0.673644 CAAAGACTAGCCACGGTGGG 60.674 60.000 27.41 14.07 38.19 4.61
324 325 1.298859 GCAAAGACTAGCCACGGTGG 61.299 60.000 22.87 22.87 41.55 4.61
325 326 0.602638 TGCAAAGACTAGCCACGGTG 60.603 55.000 0.00 0.00 0.00 4.94
326 327 0.324943 ATGCAAAGACTAGCCACGGT 59.675 50.000 0.00 0.00 0.00 4.83
327 328 1.131126 CAATGCAAAGACTAGCCACGG 59.869 52.381 0.00 0.00 0.00 4.94
328 329 1.131126 CCAATGCAAAGACTAGCCACG 59.869 52.381 0.00 0.00 0.00 4.94
329 330 2.436417 TCCAATGCAAAGACTAGCCAC 58.564 47.619 0.00 0.00 0.00 5.01
330 331 2.877097 TCCAATGCAAAGACTAGCCA 57.123 45.000 0.00 0.00 0.00 4.75
331 332 3.347216 TCTTCCAATGCAAAGACTAGCC 58.653 45.455 0.00 0.00 0.00 3.93
332 333 3.376546 CCTCTTCCAATGCAAAGACTAGC 59.623 47.826 0.00 0.00 0.00 3.42
333 334 4.583871 ACCTCTTCCAATGCAAAGACTAG 58.416 43.478 0.00 0.00 0.00 2.57
334 335 4.287067 AGACCTCTTCCAATGCAAAGACTA 59.713 41.667 0.00 0.00 0.00 2.59
335 336 3.073650 AGACCTCTTCCAATGCAAAGACT 59.926 43.478 0.00 0.00 0.00 3.24
336 337 3.416156 AGACCTCTTCCAATGCAAAGAC 58.584 45.455 0.00 0.00 0.00 3.01
337 338 3.795688 AGACCTCTTCCAATGCAAAGA 57.204 42.857 0.00 0.00 0.00 2.52
338 339 5.067023 GGATTAGACCTCTTCCAATGCAAAG 59.933 44.000 0.00 0.00 0.00 2.77
339 340 4.949856 GGATTAGACCTCTTCCAATGCAAA 59.050 41.667 0.00 0.00 0.00 3.68
340 341 4.526970 GGATTAGACCTCTTCCAATGCAA 58.473 43.478 0.00 0.00 0.00 4.08
341 342 3.432186 CGGATTAGACCTCTTCCAATGCA 60.432 47.826 0.00 0.00 0.00 3.96
342 343 3.134458 CGGATTAGACCTCTTCCAATGC 58.866 50.000 0.00 0.00 0.00 3.56
343 344 4.672587 TCGGATTAGACCTCTTCCAATG 57.327 45.455 0.00 0.00 0.00 2.82
344 345 4.469945 TGTTCGGATTAGACCTCTTCCAAT 59.530 41.667 0.00 0.00 0.00 3.16
345 346 3.835978 TGTTCGGATTAGACCTCTTCCAA 59.164 43.478 0.00 0.00 0.00 3.53
346 347 3.437213 TGTTCGGATTAGACCTCTTCCA 58.563 45.455 0.00 0.00 0.00 3.53
347 348 3.738590 GCTGTTCGGATTAGACCTCTTCC 60.739 52.174 0.00 0.00 0.00 3.46
348 349 3.131400 AGCTGTTCGGATTAGACCTCTTC 59.869 47.826 0.00 0.00 0.00 2.87
349 350 3.100671 AGCTGTTCGGATTAGACCTCTT 58.899 45.455 0.00 0.00 0.00 2.85
350 351 2.741145 AGCTGTTCGGATTAGACCTCT 58.259 47.619 0.00 0.00 0.00 3.69
351 352 3.633065 AGTAGCTGTTCGGATTAGACCTC 59.367 47.826 0.00 0.00 0.00 3.85
352 353 3.381908 CAGTAGCTGTTCGGATTAGACCT 59.618 47.826 0.00 0.00 0.00 3.85
353 354 3.491104 CCAGTAGCTGTTCGGATTAGACC 60.491 52.174 0.00 0.00 0.00 3.85
354 355 3.130693 ACCAGTAGCTGTTCGGATTAGAC 59.869 47.826 0.00 0.00 0.00 2.59
355 356 3.362706 ACCAGTAGCTGTTCGGATTAGA 58.637 45.455 0.00 0.00 0.00 2.10
356 357 3.802948 ACCAGTAGCTGTTCGGATTAG 57.197 47.619 0.00 0.00 0.00 1.73
357 358 3.512329 TCAACCAGTAGCTGTTCGGATTA 59.488 43.478 0.00 0.00 0.00 1.75
358 359 2.301870 TCAACCAGTAGCTGTTCGGATT 59.698 45.455 0.00 0.00 0.00 3.01
359 360 1.899814 TCAACCAGTAGCTGTTCGGAT 59.100 47.619 0.00 0.00 0.00 4.18
360 361 1.334160 TCAACCAGTAGCTGTTCGGA 58.666 50.000 0.00 0.00 0.00 4.55
361 362 1.798813 GTTCAACCAGTAGCTGTTCGG 59.201 52.381 0.00 0.00 0.00 4.30
362 363 2.731976 GAGTTCAACCAGTAGCTGTTCG 59.268 50.000 0.00 0.00 0.00 3.95
363 364 3.067833 GGAGTTCAACCAGTAGCTGTTC 58.932 50.000 0.00 0.00 0.00 3.18
364 365 2.548067 CGGAGTTCAACCAGTAGCTGTT 60.548 50.000 0.00 0.00 0.00 3.16
365 366 1.000955 CGGAGTTCAACCAGTAGCTGT 59.999 52.381 0.00 0.00 0.00 4.40
366 367 1.714794 CGGAGTTCAACCAGTAGCTG 58.285 55.000 0.00 0.00 0.00 4.24
367 368 0.037232 GCGGAGTTCAACCAGTAGCT 60.037 55.000 0.00 0.00 0.00 3.32
368 369 0.037232 AGCGGAGTTCAACCAGTAGC 60.037 55.000 0.00 0.00 0.00 3.58
369 370 2.230508 TGTAGCGGAGTTCAACCAGTAG 59.769 50.000 0.00 0.00 0.00 2.57
370 371 2.029649 GTGTAGCGGAGTTCAACCAGTA 60.030 50.000 0.00 0.00 0.00 2.74
371 372 1.045407 TGTAGCGGAGTTCAACCAGT 58.955 50.000 0.00 0.00 0.00 4.00
372 373 1.270094 TGTGTAGCGGAGTTCAACCAG 60.270 52.381 0.00 0.00 0.00 4.00
373 374 0.753867 TGTGTAGCGGAGTTCAACCA 59.246 50.000 0.00 0.00 0.00 3.67
374 375 1.429463 CTGTGTAGCGGAGTTCAACC 58.571 55.000 0.00 0.00 0.00 3.77
375 376 0.790814 GCTGTGTAGCGGAGTTCAAC 59.209 55.000 0.00 0.00 40.67 3.18
376 377 3.210857 GCTGTGTAGCGGAGTTCAA 57.789 52.632 0.00 0.00 40.67 2.69
377 378 4.988065 GCTGTGTAGCGGAGTTCA 57.012 55.556 0.00 0.00 40.67 3.18
431 432 0.958822 GTGTCAAAATGCTCGGGGTT 59.041 50.000 0.00 0.00 0.00 4.11
463 464 4.794241 GCAATGACACGTCCGCGC 62.794 66.667 0.00 0.00 42.83 6.86
491 492 1.981495 AGGTTTTCTCCTGACTCCTGG 59.019 52.381 0.00 0.00 36.35 4.45
493 494 1.896465 CGAGGTTTTCTCCTGACTCCT 59.104 52.381 0.00 0.00 39.30 3.69
522 529 1.468520 ACAAGTTCATTGCGGATTCGG 59.531 47.619 0.00 0.00 43.15 4.30
526 533 1.176527 CCCACAAGTTCATTGCGGAT 58.823 50.000 0.00 0.00 42.75 4.18
532 539 2.819608 CGTTCCATCCCACAAGTTCATT 59.180 45.455 0.00 0.00 0.00 2.57
636 645 4.388499 TGTCGGCTTTCTCGGGCC 62.388 66.667 0.00 0.00 44.43 5.80
637 646 3.119096 GTGTCGGCTTTCTCGGGC 61.119 66.667 0.00 0.00 0.00 6.13
640 649 1.801913 CTCGGTGTCGGCTTTCTCG 60.802 63.158 0.00 0.00 36.95 4.04
703 712 3.451894 GTTGGATTGGCAGGGGCG 61.452 66.667 0.00 0.00 42.47 6.13
764 773 4.087892 AAGCGGCGAGATGGCACT 62.088 61.111 12.98 0.00 45.16 4.40
868 877 3.054802 GGAGTTCTGGATTCTGATGGTGT 60.055 47.826 0.00 0.00 0.00 4.16
880 889 1.898472 CTCTGCTTCTGGAGTTCTGGA 59.102 52.381 0.00 0.00 33.13 3.86
881 890 1.675415 GCTCTGCTTCTGGAGTTCTGG 60.675 57.143 0.00 0.00 33.13 3.86
882 891 1.001746 TGCTCTGCTTCTGGAGTTCTG 59.998 52.381 0.00 0.00 33.13 3.02
883 892 1.346062 TGCTCTGCTTCTGGAGTTCT 58.654 50.000 0.00 0.00 33.13 3.01
884 893 2.175878 TTGCTCTGCTTCTGGAGTTC 57.824 50.000 0.00 0.00 33.13 3.01
885 894 2.617532 GGATTGCTCTGCTTCTGGAGTT 60.618 50.000 0.00 0.00 33.13 3.01
886 895 1.065564 GGATTGCTCTGCTTCTGGAGT 60.066 52.381 0.00 0.00 33.13 3.85
887 896 1.666054 GGATTGCTCTGCTTCTGGAG 58.334 55.000 0.00 0.00 0.00 3.86
919 928 5.364735 AGATTGATTGGGAATTTGGGATCAC 59.635 40.000 0.00 0.00 0.00 3.06
920 929 5.531198 AGATTGATTGGGAATTTGGGATCA 58.469 37.500 0.00 0.00 0.00 2.92
923 932 4.716287 GGAAGATTGATTGGGAATTTGGGA 59.284 41.667 0.00 0.00 0.00 4.37
924 933 4.470664 TGGAAGATTGATTGGGAATTTGGG 59.529 41.667 0.00 0.00 0.00 4.12
925 934 5.680594 TGGAAGATTGATTGGGAATTTGG 57.319 39.130 0.00 0.00 0.00 3.28
926 935 5.876460 GGTTGGAAGATTGATTGGGAATTTG 59.124 40.000 0.00 0.00 0.00 2.32
927 936 5.045651 GGGTTGGAAGATTGATTGGGAATTT 60.046 40.000 0.00 0.00 0.00 1.82
928 937 4.471025 GGGTTGGAAGATTGATTGGGAATT 59.529 41.667 0.00 0.00 0.00 2.17
929 938 4.033009 GGGTTGGAAGATTGATTGGGAAT 58.967 43.478 0.00 0.00 0.00 3.01
930 939 3.181413 TGGGTTGGAAGATTGATTGGGAA 60.181 43.478 0.00 0.00 0.00 3.97
961 976 3.624861 GCTCACAACCTACAATGGATCAG 59.375 47.826 0.00 0.00 0.00 2.90
962 977 3.609853 GCTCACAACCTACAATGGATCA 58.390 45.455 0.00 0.00 0.00 2.92
975 990 2.428071 GCTGCTTGCGCTCACAAC 60.428 61.111 9.73 0.00 36.97 3.32
2208 2422 2.031163 AGCTGCACCCTCACGTTC 59.969 61.111 1.02 0.00 0.00 3.95
2835 3284 4.443266 GCGAGCTCGGTCTTGCCT 62.443 66.667 35.10 0.00 37.48 4.75
3026 5941 5.827666 ACCCAAATTCAGTCTTTGTTTACG 58.172 37.500 0.00 0.00 32.83 3.18
3050 5965 8.421249 AGAACAATTTGTAATCCCAAATCAGA 57.579 30.769 1.76 0.00 42.63 3.27
3065 5980 4.748102 AGCTGCATTCACAAGAACAATTTG 59.252 37.500 1.02 0.00 36.39 2.32
3077 5992 0.940126 CCCGACATAGCTGCATTCAC 59.060 55.000 1.02 0.00 0.00 3.18
3321 6236 1.089920 CCTTCATGGAGTTCTTGCCG 58.910 55.000 0.00 0.00 38.35 5.69
3377 6292 2.996249 TGGAGATTGAGCTGATCCAC 57.004 50.000 0.00 0.00 35.16 4.02
3409 6324 3.443099 TTGCAGATCAGAGGTACATCG 57.557 47.619 1.22 0.00 0.00 3.84
3410 6325 4.510711 CACATTGCAGATCAGAGGTACATC 59.489 45.833 0.00 0.00 0.00 3.06
3411 6326 4.162888 TCACATTGCAGATCAGAGGTACAT 59.837 41.667 0.00 0.00 0.00 2.29
3413 6328 4.128925 TCACATTGCAGATCAGAGGTAC 57.871 45.455 0.00 0.00 0.00 3.34
3414 6329 4.700700 CATCACATTGCAGATCAGAGGTA 58.299 43.478 0.00 0.00 0.00 3.08
3415 6330 3.542648 CATCACATTGCAGATCAGAGGT 58.457 45.455 0.00 0.00 0.00 3.85
3442 6357 0.248054 GCACACAACCACACACGAAG 60.248 55.000 0.00 0.00 0.00 3.79
3453 6368 2.633657 CTCACCTGCGCACACAAC 59.366 61.111 5.66 0.00 0.00 3.32
3461 6379 3.245668 AAGTGCCTCCTCACCTGCG 62.246 63.158 0.00 0.00 37.68 5.18
3673 6591 9.905713 AAATCAGAAATTTAGTAGTAGGATGCA 57.094 29.630 0.00 0.00 0.00 3.96
4017 6956 2.441532 TCGTCCCCGTCCTCCATC 60.442 66.667 0.00 0.00 35.01 3.51
4039 6978 1.278985 TCAAACATCCTCGTCCATGCT 59.721 47.619 0.00 0.00 0.00 3.79
4075 7014 0.886563 GGCACTTCAGCAAGCTTCAT 59.113 50.000 0.00 0.00 35.83 2.57
4104 7044 1.195448 CCGCAACTCATCAACACACTC 59.805 52.381 0.00 0.00 0.00 3.51
4112 7052 1.375908 GCCTCACCGCAACTCATCA 60.376 57.895 0.00 0.00 0.00 3.07
4187 7164 3.374058 ACCGACTCACAAAAACACAGAAG 59.626 43.478 0.00 0.00 0.00 2.85
4207 7184 5.062809 CACTCTATTCTCTTCGCTTTCAACC 59.937 44.000 0.00 0.00 0.00 3.77
4225 7202 4.623932 AGGCAATTCACAAGACACTCTA 57.376 40.909 0.00 0.00 0.00 2.43
4299 7276 5.909610 CGCGATGATGATATAATAAGCGAGA 59.090 40.000 0.00 0.00 45.60 4.04
4300 7277 5.909610 TCGCGATGATGATATAATAAGCGAG 59.090 40.000 3.71 0.00 46.13 5.03
4302 7279 5.455525 TGTCGCGATGATGATATAATAAGCG 59.544 40.000 14.06 0.00 44.36 4.68
4303 7280 6.812481 TGTCGCGATGATGATATAATAAGC 57.188 37.500 14.06 0.00 0.00 3.09
4305 7282 8.116136 GCATTTGTCGCGATGATGATATAATAA 58.884 33.333 24.22 0.00 0.00 1.40
4378 7356 5.048782 CCCAAATTCGAATTTCAGTGACTCA 60.049 40.000 28.70 0.00 36.52 3.41
4404 7382 6.230472 TCTTCTTCATTCTCGAATTCAACCA 58.770 36.000 6.22 0.00 0.00 3.67
4405 7383 6.727824 TCTTCTTCATTCTCGAATTCAACC 57.272 37.500 6.22 0.00 0.00 3.77
4415 7393 3.061429 CCGACGCTTTCTTCTTCATTCTC 59.939 47.826 0.00 0.00 0.00 2.87
4456 7436 2.288025 GCCCACCCCACGTAAGAGA 61.288 63.158 0.00 0.00 43.62 3.10
4457 7437 1.910580 ATGCCCACCCCACGTAAGAG 61.911 60.000 0.00 0.00 43.62 2.85
4458 7438 1.493854 AATGCCCACCCCACGTAAGA 61.494 55.000 0.00 0.00 43.62 2.10
4460 7440 1.001887 GAATGCCCACCCCACGTAA 60.002 57.895 0.00 0.00 0.00 3.18
4461 7441 2.672295 GAATGCCCACCCCACGTA 59.328 61.111 0.00 0.00 0.00 3.57
4462 7442 4.715523 CGAATGCCCACCCCACGT 62.716 66.667 0.00 0.00 0.00 4.49
4473 7495 1.427020 GTGCTTCTCTGGCGAATGC 59.573 57.895 0.00 0.00 41.71 3.56
4474 7496 1.699656 CCGTGCTTCTCTGGCGAATG 61.700 60.000 0.00 0.00 0.00 2.67
4514 7970 1.062587 CCGTCCGATGCAAAATCACTC 59.937 52.381 0.00 0.00 0.00 3.51
4549 8005 3.200825 TGTTGGAAAAAGAAATTGGGCCA 59.799 39.130 0.00 0.00 0.00 5.36
4553 8009 7.495279 TCTTGACATGTTGGAAAAAGAAATTGG 59.505 33.333 0.00 0.00 0.00 3.16
4724 8309 0.181587 TCGCACCAAGTTCCCTTTGA 59.818 50.000 0.00 0.00 0.00 2.69
4829 8415 8.831550 CAGTCCAGGAAGCTTTTTATACTAATC 58.168 37.037 0.00 0.00 0.00 1.75
4863 8449 8.415950 TTTATTCATCTTTTGCCCTAAGTCAA 57.584 30.769 0.00 0.00 0.00 3.18
4923 8511 0.947180 AACGCACGGACATGTGTACC 60.947 55.000 1.15 0.00 42.42 3.34
4963 8551 1.529010 TGGCACAGGAAGCAGGTTG 60.529 57.895 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.