Multiple sequence alignment - TraesCS1B01G351200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G351200 chr1B 100.000 1860 0 0 393 2252 581596907 581595048 0.000000e+00 3435.0
1 TraesCS1B01G351200 chr1B 100.000 60 0 0 1 60 581597299 581597240 7.940000e-21 111.0
2 TraesCS1B01G351200 chr1B 100.000 45 0 0 2670 2714 581594630 581594586 1.730000e-12 84.2
3 TraesCS1B01G351200 chr1D 92.943 1913 74 32 393 2252 430482757 430480853 0.000000e+00 2728.0
4 TraesCS1B01G351200 chr1A 91.809 1880 81 40 422 2252 528103633 528101778 0.000000e+00 2551.0
5 TraesCS1B01G351200 chr3D 77.235 716 97 43 1017 1699 378529343 378530025 2.570000e-95 359.0
6 TraesCS1B01G351200 chr3A 77.095 716 98 42 1017 1699 502490408 502491090 1.200000e-93 353.0
7 TraesCS1B01G351200 chr3B 76.039 722 104 43 1017 1699 493584578 493585269 7.300000e-81 311.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G351200 chr1B 581594586 581597299 2713 True 1210.066667 3435 100.000 1 2714 3 chr1B.!!$R1 2713
1 TraesCS1B01G351200 chr1D 430480853 430482757 1904 True 2728.000000 2728 92.943 393 2252 1 chr1D.!!$R1 1859
2 TraesCS1B01G351200 chr1A 528101778 528103633 1855 True 2551.000000 2551 91.809 422 2252 1 chr1A.!!$R1 1830
3 TraesCS1B01G351200 chr3D 378529343 378530025 682 False 359.000000 359 77.235 1017 1699 1 chr3D.!!$F1 682
4 TraesCS1B01G351200 chr3A 502490408 502491090 682 False 353.000000 353 77.095 1017 1699 1 chr3A.!!$F1 682
5 TraesCS1B01G351200 chr3B 493584578 493585269 691 False 311.000000 311 76.039 1017 1699 1 chr3B.!!$F1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.118952 ATGCCCCAATGTTTCCCCTT 59.881 50.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1809 0.179215 GTAATATGCCATGCGCGCTC 60.179 55.0 33.29 18.18 42.08 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.301637 CCATAACTGAAATTTACCCCGC 57.698 45.455 0.00 0.00 0.00 6.13
22 23 3.067601 CCATAACTGAAATTTACCCCGCC 59.932 47.826 0.00 0.00 0.00 6.13
23 24 1.552578 AACTGAAATTTACCCCGCCC 58.447 50.000 0.00 0.00 0.00 6.13
24 25 0.323999 ACTGAAATTTACCCCGCCCC 60.324 55.000 0.00 0.00 0.00 5.80
25 26 1.378778 TGAAATTTACCCCGCCCCG 60.379 57.895 0.00 0.00 0.00 5.73
26 27 2.756691 AAATTTACCCCGCCCCGC 60.757 61.111 0.00 0.00 0.00 6.13
27 28 4.826404 AATTTACCCCGCCCCGCC 62.826 66.667 0.00 0.00 0.00 6.13
38 39 4.452733 CCCCGCCTTCTCGTCCAC 62.453 72.222 0.00 0.00 0.00 4.02
39 40 4.452733 CCCGCCTTCTCGTCCACC 62.453 72.222 0.00 0.00 0.00 4.61
40 41 3.691342 CCGCCTTCTCGTCCACCA 61.691 66.667 0.00 0.00 0.00 4.17
41 42 2.579201 CGCCTTCTCGTCCACCAT 59.421 61.111 0.00 0.00 0.00 3.55
42 43 1.811266 CGCCTTCTCGTCCACCATG 60.811 63.158 0.00 0.00 0.00 3.66
43 44 2.109126 GCCTTCTCGTCCACCATGC 61.109 63.158 0.00 0.00 0.00 4.06
44 45 1.450312 CCTTCTCGTCCACCATGCC 60.450 63.158 0.00 0.00 0.00 4.40
45 46 1.450312 CTTCTCGTCCACCATGCCC 60.450 63.158 0.00 0.00 0.00 5.36
46 47 2.876368 CTTCTCGTCCACCATGCCCC 62.876 65.000 0.00 0.00 0.00 5.80
47 48 3.716195 CTCGTCCACCATGCCCCA 61.716 66.667 0.00 0.00 0.00 4.96
48 49 3.253061 TCGTCCACCATGCCCCAA 61.253 61.111 0.00 0.00 0.00 4.12
49 50 2.044053 CGTCCACCATGCCCCAAT 60.044 61.111 0.00 0.00 0.00 3.16
50 51 2.417257 CGTCCACCATGCCCCAATG 61.417 63.158 0.00 0.00 0.00 2.82
51 52 1.305213 GTCCACCATGCCCCAATGT 60.305 57.895 0.00 0.00 0.00 2.71
52 53 0.904394 GTCCACCATGCCCCAATGTT 60.904 55.000 0.00 0.00 0.00 2.71
53 54 0.178909 TCCACCATGCCCCAATGTTT 60.179 50.000 0.00 0.00 0.00 2.83
54 55 0.249955 CCACCATGCCCCAATGTTTC 59.750 55.000 0.00 0.00 0.00 2.78
55 56 0.249955 CACCATGCCCCAATGTTTCC 59.750 55.000 0.00 0.00 0.00 3.13
56 57 0.909133 ACCATGCCCCAATGTTTCCC 60.909 55.000 0.00 0.00 0.00 3.97
57 58 1.625417 CCATGCCCCAATGTTTCCCC 61.625 60.000 0.00 0.00 0.00 4.81
58 59 0.618393 CATGCCCCAATGTTTCCCCT 60.618 55.000 0.00 0.00 0.00 4.79
59 60 0.118952 ATGCCCCAATGTTTCCCCTT 59.881 50.000 0.00 0.00 0.00 3.95
415 416 1.257936 CCACACGTTCGAACTTGAGTG 59.742 52.381 33.46 28.27 33.00 3.51
420 421 1.201704 CGTTCGAACTTGAGTGCATCG 60.202 52.381 24.80 4.46 34.98 3.84
532 535 3.572682 CCTTACAACTCCACCCCTTTTTC 59.427 47.826 0.00 0.00 0.00 2.29
533 536 2.082140 ACAACTCCACCCCTTTTTCC 57.918 50.000 0.00 0.00 0.00 3.13
534 537 1.289530 ACAACTCCACCCCTTTTTCCA 59.710 47.619 0.00 0.00 0.00 3.53
540 545 4.156477 CTCCACCCCTTTTTCCATTACAA 58.844 43.478 0.00 0.00 0.00 2.41
644 649 7.056635 CCTCACAATTTCACCTCTTATGGTAT 58.943 38.462 0.00 0.00 38.45 2.73
741 747 4.991056 GCTTCCCAAGAAAATGAAAAGACC 59.009 41.667 0.00 0.00 0.00 3.85
858 867 2.171870 ACCTCACGGTCAAAGGAAGAAA 59.828 45.455 7.53 0.00 40.27 2.52
859 868 3.211045 CCTCACGGTCAAAGGAAGAAAA 58.789 45.455 0.00 0.00 31.44 2.29
942 954 2.933287 TGCCGTCCCTGAACCCAT 60.933 61.111 0.00 0.00 0.00 4.00
972 984 2.628021 CCCCCTCTCTTCTTCTCCATCA 60.628 54.545 0.00 0.00 0.00 3.07
1089 1101 3.707640 CTCCTCCTCCTCGCCGTCT 62.708 68.421 0.00 0.00 0.00 4.18
1539 1605 4.668118 TTCAACCGGTCCGCGTCC 62.668 66.667 8.04 6.42 0.00 4.79
1717 1792 2.870161 CGTCGTCGGAGTGAAGCG 60.870 66.667 0.00 0.00 0.00 4.68
1718 1793 2.559840 GTCGTCGGAGTGAAGCGA 59.440 61.111 0.00 0.00 0.00 4.93
1720 1795 0.862283 GTCGTCGGAGTGAAGCGATC 60.862 60.000 0.00 0.00 34.10 3.69
1721 1796 1.586564 CGTCGGAGTGAAGCGATCC 60.587 63.158 0.00 0.00 0.00 3.36
1722 1797 1.511305 GTCGGAGTGAAGCGATCCA 59.489 57.895 0.00 0.00 32.31 3.41
1723 1798 0.526524 GTCGGAGTGAAGCGATCCAG 60.527 60.000 0.00 0.00 32.31 3.86
1725 1800 1.522580 GGAGTGAAGCGATCCAGCC 60.523 63.158 0.00 0.00 38.01 4.85
1726 1801 1.522580 GAGTGAAGCGATCCAGCCC 60.523 63.158 0.00 0.00 38.01 5.19
1727 1802 2.892425 GTGAAGCGATCCAGCCCG 60.892 66.667 0.00 0.00 38.01 6.13
1812 1910 3.489047 TGTTGTAATTTTTGCTCGCTTGC 59.511 39.130 0.00 0.00 0.00 4.01
1870 1972 0.829990 CTCTTTGAGCTCCTCCCCTC 59.170 60.000 12.15 0.00 0.00 4.30
1875 1977 4.101077 AGCTCCTCCCCTCCCCTG 62.101 72.222 0.00 0.00 0.00 4.45
1877 1984 2.041405 CTCCTCCCCTCCCCTGTC 60.041 72.222 0.00 0.00 0.00 3.51
1955 2070 5.116983 GTGTCCGTTTCATGCAGTTAATTTG 59.883 40.000 0.00 0.00 0.00 2.32
1964 2079 5.576384 TCATGCAGTTAATTTGCGGAAAATC 59.424 36.000 6.08 0.00 44.40 2.17
1969 2084 6.366061 GCAGTTAATTTGCGGAAAATCTTTCT 59.634 34.615 6.08 0.00 37.51 2.52
2008 2123 0.461135 ATTCATGGAAACGGCATGCC 59.539 50.000 27.67 27.67 0.00 4.40
2044 2160 5.491982 GGGATCTCTCTCTTTTAAGTTGCA 58.508 41.667 0.00 0.00 0.00 4.08
2067 2186 6.487103 CACTAAAGCTTAATTTCCGCTAAGG 58.513 40.000 0.00 0.00 42.97 2.69
2092 2211 8.502387 GGTACGAACCATCTACTGTACTAATAG 58.498 40.741 0.00 0.00 45.98 1.73
2101 2220 6.860080 TCTACTGTACTAATAGTGGTTGCAC 58.140 40.000 2.68 0.00 29.12 4.57
2116 2235 4.240096 GGTTGCACCATTCAGAATTCTTG 58.760 43.478 4.86 1.71 38.42 3.02
2148 2267 3.900855 GCATCCAGCCTGACACAG 58.099 61.111 0.00 0.00 37.23 3.66
2692 2812 2.971660 TGTCGAGGAACACAAGAACA 57.028 45.000 0.00 0.00 0.00 3.18
2693 2813 3.254470 TGTCGAGGAACACAAGAACAA 57.746 42.857 0.00 0.00 0.00 2.83
2694 2814 3.194861 TGTCGAGGAACACAAGAACAAG 58.805 45.455 0.00 0.00 0.00 3.16
2695 2815 2.032808 GTCGAGGAACACAAGAACAAGC 60.033 50.000 0.00 0.00 0.00 4.01
2696 2816 1.264288 CGAGGAACACAAGAACAAGCC 59.736 52.381 0.00 0.00 0.00 4.35
2697 2817 1.264288 GAGGAACACAAGAACAAGCCG 59.736 52.381 0.00 0.00 0.00 5.52
2698 2818 1.021968 GGAACACAAGAACAAGCCGT 58.978 50.000 0.00 0.00 0.00 5.68
2699 2819 1.002792 GGAACACAAGAACAAGCCGTC 60.003 52.381 0.00 0.00 0.00 4.79
2700 2820 1.668751 GAACACAAGAACAAGCCGTCA 59.331 47.619 0.00 0.00 0.00 4.35
2701 2821 1.967319 ACACAAGAACAAGCCGTCAT 58.033 45.000 0.00 0.00 0.00 3.06
2702 2822 1.603802 ACACAAGAACAAGCCGTCATG 59.396 47.619 0.00 0.00 0.00 3.07
2703 2823 1.603802 CACAAGAACAAGCCGTCATGT 59.396 47.619 0.00 0.00 0.00 3.21
2704 2824 1.873591 ACAAGAACAAGCCGTCATGTC 59.126 47.619 0.00 0.00 0.00 3.06
2705 2825 1.872952 CAAGAACAAGCCGTCATGTCA 59.127 47.619 0.00 0.00 0.00 3.58
2706 2826 1.512926 AGAACAAGCCGTCATGTCAC 58.487 50.000 0.00 0.00 0.00 3.67
2707 2827 1.202639 AGAACAAGCCGTCATGTCACA 60.203 47.619 0.00 0.00 0.00 3.58
2708 2828 1.806542 GAACAAGCCGTCATGTCACAT 59.193 47.619 0.00 0.00 0.00 3.21
2709 2829 1.442769 ACAAGCCGTCATGTCACATC 58.557 50.000 0.00 0.00 0.00 3.06
2710 2830 0.371301 CAAGCCGTCATGTCACATCG 59.629 55.000 0.00 0.00 0.00 3.84
2711 2831 0.246360 AAGCCGTCATGTCACATCGA 59.754 50.000 0.54 0.00 0.00 3.59
2712 2832 0.179127 AGCCGTCATGTCACATCGAG 60.179 55.000 0.54 0.00 0.00 4.04
2713 2833 1.756375 GCCGTCATGTCACATCGAGC 61.756 60.000 0.54 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.067601 GGCGGGGTAAATTTCAGTTATGG 59.932 47.826 0.00 0.00 0.00 2.74
1 2 3.067601 GGGCGGGGTAAATTTCAGTTATG 59.932 47.826 0.00 0.00 0.00 1.90
3 4 2.621147 GGGGCGGGGTAAATTTCAGTTA 60.621 50.000 0.00 0.00 0.00 2.24
4 5 1.552578 GGGCGGGGTAAATTTCAGTT 58.447 50.000 0.00 0.00 0.00 3.16
6 7 1.381165 CGGGGCGGGGTAAATTTCAG 61.381 60.000 0.00 0.00 0.00 3.02
7 8 1.378778 CGGGGCGGGGTAAATTTCA 60.379 57.895 0.00 0.00 0.00 2.69
8 9 2.777972 GCGGGGCGGGGTAAATTTC 61.778 63.158 0.00 0.00 0.00 2.17
9 10 2.756691 GCGGGGCGGGGTAAATTT 60.757 61.111 0.00 0.00 0.00 1.82
10 11 4.826404 GGCGGGGCGGGGTAAATT 62.826 66.667 0.00 0.00 0.00 1.82
21 22 4.452733 GTGGACGAGAAGGCGGGG 62.453 72.222 0.00 0.00 35.12 5.73
22 23 4.452733 GGTGGACGAGAAGGCGGG 62.453 72.222 0.00 0.00 35.12 6.13
23 24 3.019003 ATGGTGGACGAGAAGGCGG 62.019 63.158 0.00 0.00 35.12 6.13
24 25 1.811266 CATGGTGGACGAGAAGGCG 60.811 63.158 0.00 0.00 37.29 5.52
25 26 2.109126 GCATGGTGGACGAGAAGGC 61.109 63.158 0.00 0.00 0.00 4.35
26 27 1.450312 GGCATGGTGGACGAGAAGG 60.450 63.158 0.00 0.00 0.00 3.46
27 28 1.450312 GGGCATGGTGGACGAGAAG 60.450 63.158 0.00 0.00 0.00 2.85
28 29 2.668632 GGGCATGGTGGACGAGAA 59.331 61.111 0.00 0.00 0.00 2.87
29 30 3.399181 GGGGCATGGTGGACGAGA 61.399 66.667 0.00 0.00 0.00 4.04
30 31 2.556840 ATTGGGGCATGGTGGACGAG 62.557 60.000 0.00 0.00 0.00 4.18
31 32 2.611505 ATTGGGGCATGGTGGACGA 61.612 57.895 0.00 0.00 0.00 4.20
32 33 2.044053 ATTGGGGCATGGTGGACG 60.044 61.111 0.00 0.00 0.00 4.79
33 34 0.904394 AACATTGGGGCATGGTGGAC 60.904 55.000 0.00 0.00 0.00 4.02
34 35 0.178909 AAACATTGGGGCATGGTGGA 60.179 50.000 0.00 0.00 0.00 4.02
35 36 0.249955 GAAACATTGGGGCATGGTGG 59.750 55.000 0.00 0.00 0.00 4.61
36 37 0.249955 GGAAACATTGGGGCATGGTG 59.750 55.000 0.00 0.00 0.00 4.17
37 38 0.909133 GGGAAACATTGGGGCATGGT 60.909 55.000 0.00 0.00 0.00 3.55
38 39 1.625417 GGGGAAACATTGGGGCATGG 61.625 60.000 0.00 0.00 0.00 3.66
39 40 0.618393 AGGGGAAACATTGGGGCATG 60.618 55.000 0.00 0.00 0.00 4.06
40 41 0.118952 AAGGGGAAACATTGGGGCAT 59.881 50.000 0.00 0.00 0.00 4.40
41 42 1.551358 AAGGGGAAACATTGGGGCA 59.449 52.632 0.00 0.00 0.00 5.36
42 43 4.559148 AAGGGGAAACATTGGGGC 57.441 55.556 0.00 0.00 0.00 5.80
392 393 1.135053 TCAAGTTCGAACGTGTGGTCA 60.135 47.619 33.08 17.86 39.07 4.02
393 394 1.521423 CTCAAGTTCGAACGTGTGGTC 59.479 52.381 33.08 7.02 39.07 4.02
394 395 1.134907 ACTCAAGTTCGAACGTGTGGT 60.135 47.619 33.43 29.14 39.07 4.16
395 396 1.257936 CACTCAAGTTCGAACGTGTGG 59.742 52.381 33.43 28.69 39.07 4.17
396 397 1.332028 GCACTCAAGTTCGAACGTGTG 60.332 52.381 33.08 31.94 39.07 3.82
397 398 0.928229 GCACTCAAGTTCGAACGTGT 59.072 50.000 33.08 21.91 39.07 4.49
398 399 0.927537 TGCACTCAAGTTCGAACGTG 59.072 50.000 30.56 30.56 39.31 4.49
399 400 1.792949 GATGCACTCAAGTTCGAACGT 59.207 47.619 21.87 16.74 0.00 3.99
438 439 7.373493 CAAAATTATATCTGGCCTCCATCAAC 58.627 38.462 3.32 0.00 30.82 3.18
532 535 5.106157 GGTGGAATTGTGAGAGTTGTAATGG 60.106 44.000 0.00 0.00 0.00 3.16
533 536 5.707298 AGGTGGAATTGTGAGAGTTGTAATG 59.293 40.000 0.00 0.00 0.00 1.90
534 537 5.880901 AGGTGGAATTGTGAGAGTTGTAAT 58.119 37.500 0.00 0.00 0.00 1.89
595 600 1.004610 CCATTGACGCTACGCTCAATG 60.005 52.381 23.21 23.21 44.45 2.82
596 601 1.290203 CCATTGACGCTACGCTCAAT 58.710 50.000 10.08 10.08 37.73 2.57
662 667 4.389687 GCTTGTGCCATGGAAAACTATTTG 59.610 41.667 18.40 0.00 0.00 2.32
715 721 6.015434 GTCTTTTCATTTTCTTGGGAAGCCTA 60.015 38.462 0.00 0.00 32.61 3.93
958 970 2.435805 CGGGGATTGATGGAGAAGAAGA 59.564 50.000 0.00 0.00 0.00 2.87
972 984 0.607217 GGTTGGTTTCGTCGGGGATT 60.607 55.000 0.00 0.00 0.00 3.01
1733 1808 1.298157 TAATATGCCATGCGCGCTCC 61.298 55.000 33.29 17.22 42.08 4.70
1734 1809 0.179215 GTAATATGCCATGCGCGCTC 60.179 55.000 33.29 18.18 42.08 5.03
1735 1810 0.603707 AGTAATATGCCATGCGCGCT 60.604 50.000 33.29 15.19 42.08 5.92
1736 1811 0.453282 CAGTAATATGCCATGCGCGC 60.453 55.000 27.26 27.26 42.08 6.86
1741 1816 5.335113 CCGGACAATTCAGTAATATGCCATG 60.335 44.000 0.00 0.00 0.00 3.66
1743 1818 4.133820 CCGGACAATTCAGTAATATGCCA 58.866 43.478 0.00 0.00 0.00 4.92
1744 1819 4.385825 TCCGGACAATTCAGTAATATGCC 58.614 43.478 0.00 0.00 0.00 4.40
1870 1972 0.250901 CACCAAGAACAGGACAGGGG 60.251 60.000 0.00 0.00 0.00 4.79
1875 1977 1.676014 CCGATCCACCAAGAACAGGAC 60.676 57.143 0.00 0.00 32.04 3.85
1877 1984 0.324943 ACCGATCCACCAAGAACAGG 59.675 55.000 0.00 0.00 0.00 4.00
1955 2070 4.972514 AGGAATGAGAAAGATTTTCCGC 57.027 40.909 0.00 0.00 40.60 5.54
1964 2079 6.939163 TGAGAGGAAAGAAAGGAATGAGAAAG 59.061 38.462 0.00 0.00 0.00 2.62
1969 2084 6.782986 TGAATGAGAGGAAAGAAAGGAATGA 58.217 36.000 0.00 0.00 0.00 2.57
2008 2123 3.482232 GATCCCGGGCCAGTGATGG 62.482 68.421 18.49 0.00 0.00 3.51
2044 2160 6.178324 ACCTTAGCGGAAATTAAGCTTTAGT 58.822 36.000 3.20 0.00 41.88 2.24
2067 2186 9.050601 ACTATTAGTACAGTAGATGGTTCGTAC 57.949 37.037 0.00 0.00 0.00 3.67
2101 2220 5.974108 AGATTTGGCAAGAATTCTGAATGG 58.026 37.500 9.17 0.00 0.00 3.16
2116 2235 4.320788 GCTGGATGCTTACATAGATTTGGC 60.321 45.833 0.00 0.00 36.35 4.52
2148 2267 2.428530 GGCAGAATTCCTTGTTCCATCC 59.571 50.000 0.65 0.00 0.00 3.51
2673 2793 2.971660 TGTTCTTGTGTTCCTCGACA 57.028 45.000 0.00 0.00 0.00 4.35
2674 2794 2.032808 GCTTGTTCTTGTGTTCCTCGAC 60.033 50.000 0.00 0.00 0.00 4.20
2675 2795 2.210116 GCTTGTTCTTGTGTTCCTCGA 58.790 47.619 0.00 0.00 0.00 4.04
2676 2796 1.264288 GGCTTGTTCTTGTGTTCCTCG 59.736 52.381 0.00 0.00 0.00 4.63
2677 2797 1.264288 CGGCTTGTTCTTGTGTTCCTC 59.736 52.381 0.00 0.00 0.00 3.71
2678 2798 1.308998 CGGCTTGTTCTTGTGTTCCT 58.691 50.000 0.00 0.00 0.00 3.36
2679 2799 1.002792 GACGGCTTGTTCTTGTGTTCC 60.003 52.381 0.00 0.00 0.00 3.62
2680 2800 1.668751 TGACGGCTTGTTCTTGTGTTC 59.331 47.619 0.00 0.00 0.00 3.18
2681 2801 1.745232 TGACGGCTTGTTCTTGTGTT 58.255 45.000 0.00 0.00 0.00 3.32
2682 2802 1.603802 CATGACGGCTTGTTCTTGTGT 59.396 47.619 0.00 0.00 0.00 3.72
2683 2803 1.603802 ACATGACGGCTTGTTCTTGTG 59.396 47.619 3.50 0.00 0.00 3.33
2684 2804 1.873591 GACATGACGGCTTGTTCTTGT 59.126 47.619 11.59 0.60 33.10 3.16
2685 2805 1.872952 TGACATGACGGCTTGTTCTTG 59.127 47.619 11.59 0.00 33.10 3.02
2686 2806 1.873591 GTGACATGACGGCTTGTTCTT 59.126 47.619 11.59 0.00 33.10 2.52
2687 2807 1.202639 TGTGACATGACGGCTTGTTCT 60.203 47.619 11.59 0.00 33.10 3.01
2688 2808 1.225855 TGTGACATGACGGCTTGTTC 58.774 50.000 11.59 8.55 33.10 3.18
2689 2809 1.806542 GATGTGACATGACGGCTTGTT 59.193 47.619 11.59 0.00 33.10 2.83
2690 2810 1.442769 GATGTGACATGACGGCTTGT 58.557 50.000 9.96 9.96 35.36 3.16
2691 2811 0.371301 CGATGTGACATGACGGCTTG 59.629 55.000 1.23 1.93 0.00 4.01
2692 2812 0.246360 TCGATGTGACATGACGGCTT 59.754 50.000 1.23 0.00 0.00 4.35
2693 2813 0.179127 CTCGATGTGACATGACGGCT 60.179 55.000 1.23 0.00 0.00 5.52
2694 2814 1.756375 GCTCGATGTGACATGACGGC 61.756 60.000 1.23 3.85 0.00 5.68
2695 2815 2.291843 GCTCGATGTGACATGACGG 58.708 57.895 1.23 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.