Multiple sequence alignment - TraesCS1B01G350900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G350900 chr1B 100.000 1670 0 0 916 2585 581347896 581349565 0.000000e+00 3085.0
1 TraesCS1B01G350900 chr1B 100.000 294 0 0 1 294 581346981 581347274 6.290000e-151 544.0
2 TraesCS1B01G350900 chr1B 84.466 515 59 8 1841 2339 85016675 85016166 2.990000e-134 488.0
3 TraesCS1B01G350900 chr5B 92.198 910 53 10 948 1842 297042230 297043136 0.000000e+00 1271.0
4 TraesCS1B01G350900 chr5B 91.730 919 57 7 942 1842 56361537 56362454 0.000000e+00 1258.0
5 TraesCS1B01G350900 chr5B 91.262 927 58 11 940 1844 517572311 517571386 0.000000e+00 1242.0
6 TraesCS1B01G350900 chr5B 90.939 927 52 4 948 1845 6260650 6261573 0.000000e+00 1218.0
7 TraesCS1B01G350900 chr5B 92.225 463 19 2 1398 1844 502106646 502107107 7.800000e-180 640.0
8 TraesCS1B01G350900 chr3D 91.630 920 48 8 942 1842 486147191 486146282 0.000000e+00 1245.0
9 TraesCS1B01G350900 chr3D 90.975 277 17 6 1 269 486147814 486147538 1.460000e-97 366.0
10 TraesCS1B01G350900 chr6B 91.357 914 61 2 948 1844 38942017 38942929 0.000000e+00 1234.0
11 TraesCS1B01G350900 chr6B 84.660 515 59 8 1842 2341 698324702 698325211 1.790000e-136 496.0
12 TraesCS1B01G350900 chr6B 85.714 77 10 1 2272 2347 226855722 226855646 2.130000e-11 80.5
13 TraesCS1B01G350900 chr5D 91.844 895 55 5 966 1845 397098263 397099154 0.000000e+00 1232.0
14 TraesCS1B01G350900 chr5D 91.266 916 51 11 942 1842 53756547 53757448 0.000000e+00 1221.0
15 TraesCS1B01G350900 chr5D 90.801 924 58 9 940 1843 432179399 432178483 0.000000e+00 1210.0
16 TraesCS1B01G350900 chr5D 89.891 920 60 13 942 1842 84452288 84453193 0.000000e+00 1153.0
17 TraesCS1B01G350900 chr5D 89.663 919 54 11 944 1844 359547151 359548046 0.000000e+00 1133.0
18 TraesCS1B01G350900 chr5D 90.106 283 22 5 1 282 84451353 84451630 1.890000e-96 363.0
19 TraesCS1B01G350900 chr5D 87.879 297 24 7 1 293 444747575 444747287 3.190000e-89 339.0
20 TraesCS1B01G350900 chr3B 90.496 947 66 7 923 1846 39642750 39643695 0.000000e+00 1229.0
21 TraesCS1B01G350900 chr3B 96.400 250 9 0 1593 1842 207186498 207186249 1.850000e-111 412.0
22 TraesCS1B01G350900 chr1D 90.939 905 49 5 955 1842 491907925 491907037 0.000000e+00 1186.0
23 TraesCS1B01G350900 chr1D 89.691 291 19 8 1 282 479343727 479343439 6.800000e-96 361.0
24 TraesCS1B01G350900 chr1D 93.496 123 8 0 2376 2498 430455719 430455841 1.580000e-42 183.0
25 TraesCS1B01G350900 chr3A 90.351 912 58 9 955 1851 418754016 418753120 0.000000e+00 1170.0
26 TraesCS1B01G350900 chr3A 87.748 302 25 9 1 293 418754807 418754509 2.460000e-90 342.0
27 TraesCS1B01G350900 chr4B 89.978 918 63 10 940 1842 577063359 577062456 0.000000e+00 1158.0
28 TraesCS1B01G350900 chr2A 89.147 516 37 9 1842 2348 206979607 206979102 2.180000e-175 625.0
29 TraesCS1B01G350900 chr5A 89.194 509 39 7 1842 2341 25608332 25607831 2.830000e-174 621.0
30 TraesCS1B01G350900 chr7A 88.409 509 43 10 1842 2341 716682786 716682285 1.320000e-167 599.0
31 TraesCS1B01G350900 chr7B 86.051 509 57 8 1842 2341 404510654 404510151 3.790000e-148 534.0
32 TraesCS1B01G350900 chr7B 89.333 300 25 6 1 293 518467878 518467579 1.130000e-98 370.0
33 TraesCS1B01G350900 chr4A 97.551 245 6 0 1598 1842 512020375 512020131 1.110000e-113 420.0
34 TraesCS1B01G350900 chr4A 91.156 294 12 9 1 292 512021743 512021462 1.120000e-103 387.0
35 TraesCS1B01G350900 chr2B 83.814 451 57 12 1893 2342 268013929 268013494 5.150000e-112 414.0
36 TraesCS1B01G350900 chr2B 98.113 53 1 0 1842 1894 268016742 268016690 2.740000e-15 93.5
37 TraesCS1B01G350900 chr2B 82.955 88 5 8 2260 2342 613088312 613088394 1.280000e-08 71.3
38 TraesCS1B01G350900 chrUn 93.991 233 13 1 1 232 441250349 441250581 4.090000e-93 351.0
39 TraesCS1B01G350900 chr7D 89.606 279 25 1 1 275 464032895 464033173 4.090000e-93 351.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G350900 chr1B 581346981 581349565 2584 False 1814.50 3085 100.0000 1 2585 2 chr1B.!!$F1 2584
1 TraesCS1B01G350900 chr1B 85016166 85016675 509 True 488.00 488 84.4660 1841 2339 1 chr1B.!!$R1 498
2 TraesCS1B01G350900 chr5B 297042230 297043136 906 False 1271.00 1271 92.1980 948 1842 1 chr5B.!!$F3 894
3 TraesCS1B01G350900 chr5B 56361537 56362454 917 False 1258.00 1258 91.7300 942 1842 1 chr5B.!!$F2 900
4 TraesCS1B01G350900 chr5B 517571386 517572311 925 True 1242.00 1242 91.2620 940 1844 1 chr5B.!!$R1 904
5 TraesCS1B01G350900 chr5B 6260650 6261573 923 False 1218.00 1218 90.9390 948 1845 1 chr5B.!!$F1 897
6 TraesCS1B01G350900 chr3D 486146282 486147814 1532 True 805.50 1245 91.3025 1 1842 2 chr3D.!!$R1 1841
7 TraesCS1B01G350900 chr6B 38942017 38942929 912 False 1234.00 1234 91.3570 948 1844 1 chr6B.!!$F1 896
8 TraesCS1B01G350900 chr6B 698324702 698325211 509 False 496.00 496 84.6600 1842 2341 1 chr6B.!!$F2 499
9 TraesCS1B01G350900 chr5D 397098263 397099154 891 False 1232.00 1232 91.8440 966 1845 1 chr5D.!!$F3 879
10 TraesCS1B01G350900 chr5D 53756547 53757448 901 False 1221.00 1221 91.2660 942 1842 1 chr5D.!!$F1 900
11 TraesCS1B01G350900 chr5D 432178483 432179399 916 True 1210.00 1210 90.8010 940 1843 1 chr5D.!!$R1 903
12 TraesCS1B01G350900 chr5D 359547151 359548046 895 False 1133.00 1133 89.6630 944 1844 1 chr5D.!!$F2 900
13 TraesCS1B01G350900 chr5D 84451353 84453193 1840 False 758.00 1153 89.9985 1 1842 2 chr5D.!!$F4 1841
14 TraesCS1B01G350900 chr3B 39642750 39643695 945 False 1229.00 1229 90.4960 923 1846 1 chr3B.!!$F1 923
15 TraesCS1B01G350900 chr1D 491907037 491907925 888 True 1186.00 1186 90.9390 955 1842 1 chr1D.!!$R2 887
16 TraesCS1B01G350900 chr3A 418753120 418754807 1687 True 756.00 1170 89.0495 1 1851 2 chr3A.!!$R1 1850
17 TraesCS1B01G350900 chr4B 577062456 577063359 903 True 1158.00 1158 89.9780 940 1842 1 chr4B.!!$R1 902
18 TraesCS1B01G350900 chr2A 206979102 206979607 505 True 625.00 625 89.1470 1842 2348 1 chr2A.!!$R1 506
19 TraesCS1B01G350900 chr5A 25607831 25608332 501 True 621.00 621 89.1940 1842 2341 1 chr5A.!!$R1 499
20 TraesCS1B01G350900 chr7A 716682285 716682786 501 True 599.00 599 88.4090 1842 2341 1 chr7A.!!$R1 499
21 TraesCS1B01G350900 chr7B 404510151 404510654 503 True 534.00 534 86.0510 1842 2341 1 chr7B.!!$R1 499
22 TraesCS1B01G350900 chr4A 512020131 512021743 1612 True 403.50 420 94.3535 1 1842 2 chr4A.!!$R1 1841
23 TraesCS1B01G350900 chr2B 268013494 268016742 3248 True 253.75 414 90.9635 1842 2342 2 chr2B.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 220 0.676782 CTTCATTTCCGTTCCCGCCT 60.677 55.000 0.0 0.0 0.0 5.52 F
1016 1557 1.073125 TCCAATGGTGCCGAAGAAGAA 59.927 47.619 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1062 1603 0.104620 ACTCCACACCCCAGTTACCT 60.105 55.0 0.00 0.0 0.00 3.08 R
2480 5901 0.247736 AAACCAAAAGCACGTGCCAA 59.752 45.0 35.51 0.0 43.38 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.571080 AAAATAACTAACTTTTGGACCGTCA 57.429 32.000 0.00 0.00 0.00 4.35
190 193 4.939368 CCCGTGAACGCCCAACCA 62.939 66.667 0.00 0.00 38.18 3.67
213 220 0.676782 CTTCATTTCCGTTCCCGCCT 60.677 55.000 0.00 0.00 0.00 5.52
215 222 1.674322 CATTTCCGTTCCCGCCTGT 60.674 57.895 0.00 0.00 0.00 4.00
991 1532 2.827642 GCTGCATGCCTCTCCACC 60.828 66.667 16.68 0.00 35.15 4.61
992 1533 2.513204 CTGCATGCCTCTCCACCG 60.513 66.667 16.68 0.00 0.00 4.94
993 1534 4.783621 TGCATGCCTCTCCACCGC 62.784 66.667 16.68 0.00 0.00 5.68
994 1535 4.479993 GCATGCCTCTCCACCGCT 62.480 66.667 6.36 0.00 0.00 5.52
995 1536 2.202987 CATGCCTCTCCACCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
996 1537 2.364842 ATGCCTCTCCACCGCTCT 60.365 61.111 0.00 0.00 0.00 4.09
997 1538 2.430610 ATGCCTCTCCACCGCTCTC 61.431 63.158 0.00 0.00 0.00 3.20
1016 1557 1.073125 TCCAATGGTGCCGAAGAAGAA 59.927 47.619 0.00 0.00 0.00 2.52
1018 1559 2.154462 CAATGGTGCCGAAGAAGAAGT 58.846 47.619 0.00 0.00 0.00 3.01
1019 1560 2.554032 CAATGGTGCCGAAGAAGAAGTT 59.446 45.455 0.00 0.00 0.00 2.66
1188 1729 3.532155 GAGAGGCCTCGGTCGCAT 61.532 66.667 26.95 7.70 34.09 4.73
1266 1809 3.943381 GCATCAACATGAAGGAGATCACA 59.057 43.478 0.00 0.00 30.57 3.58
1271 1817 5.645067 TCAACATGAAGGAGATCACAATGAC 59.355 40.000 0.00 0.00 30.82 3.06
1310 1863 1.298863 CGTCGGTTGTCGTCAGTGT 60.299 57.895 0.00 0.00 40.32 3.55
1443 2000 1.118838 CGAAGAAGGAGGATGAGGCT 58.881 55.000 0.00 0.00 0.00 4.58
1527 2117 2.781406 GAGGAGGAGGAGGGGTGT 59.219 66.667 0.00 0.00 0.00 4.16
1914 5318 1.746470 CTTCATCTGTGCCTGCATCA 58.254 50.000 0.00 0.00 0.00 3.07
1915 5319 2.089201 CTTCATCTGTGCCTGCATCAA 58.911 47.619 0.00 0.00 0.00 2.57
1917 5321 1.170442 CATCTGTGCCTGCATCAACA 58.830 50.000 0.00 0.00 0.00 3.33
1976 5380 3.976701 CTGGGAAGGCCGTGCGATT 62.977 63.158 3.77 0.00 33.83 3.34
1977 5381 2.750237 GGGAAGGCCGTGCGATTT 60.750 61.111 3.77 0.00 33.83 2.17
1994 5403 2.957402 TTTGCAATCTGACCTCACCT 57.043 45.000 0.00 0.00 0.00 4.00
2065 5476 0.814812 CCGGGTCTACTCCTCTCGAC 60.815 65.000 0.00 0.00 0.00 4.20
2067 5478 0.177604 GGGTCTACTCCTCTCGACGA 59.822 60.000 0.00 0.00 0.00 4.20
2078 5489 2.030185 CCTCTCGACGAAGAAAGTTCCA 60.030 50.000 0.00 0.00 0.00 3.53
2085 5496 1.798813 CGAAGAAAGTTCCACTTCCGG 59.201 52.381 0.00 0.00 37.47 5.14
2110 5521 2.582498 GAGCCGCGCGACATAGTT 60.582 61.111 34.63 12.34 0.00 2.24
2111 5522 1.298863 GAGCCGCGCGACATAGTTA 60.299 57.895 34.63 0.00 0.00 2.24
2112 5523 1.269444 GAGCCGCGCGACATAGTTAG 61.269 60.000 34.63 12.35 0.00 2.34
2113 5524 1.298863 GCCGCGCGACATAGTTAGA 60.299 57.895 34.63 0.00 0.00 2.10
2114 5525 0.663568 GCCGCGCGACATAGTTAGAT 60.664 55.000 34.63 0.00 0.00 1.98
2137 5548 2.158957 TCCAAGGATTATGACAGGTCGC 60.159 50.000 0.00 0.00 0.00 5.19
2231 5651 1.378514 AAATGAAGCCCACGCGGAT 60.379 52.632 12.47 0.00 41.18 4.18
2258 5679 2.009774 GGACATCCAACGACCAGATTG 58.990 52.381 0.00 0.00 35.64 2.67
2320 5741 0.250901 GAGAGGGCAGGAAAAGTGCA 60.251 55.000 0.00 0.00 43.12 4.57
2321 5742 0.407139 AGAGGGCAGGAAAAGTGCAT 59.593 50.000 0.00 0.00 43.12 3.96
2342 5763 9.801873 GTGCATGGTTGTAATGTATCTAAATTT 57.198 29.630 0.00 0.00 0.00 1.82
2410 5831 9.558396 AAATGTTTGATTTGATTGCTAAAAGGA 57.442 25.926 0.00 0.00 0.00 3.36
2411 5832 9.729281 AATGTTTGATTTGATTGCTAAAAGGAT 57.271 25.926 0.00 0.00 0.00 3.24
2412 5833 8.537049 TGTTTGATTTGATTGCTAAAAGGATG 57.463 30.769 0.00 0.00 0.00 3.51
2413 5834 8.149647 TGTTTGATTTGATTGCTAAAAGGATGT 58.850 29.630 0.00 0.00 0.00 3.06
2414 5835 9.638239 GTTTGATTTGATTGCTAAAAGGATGTA 57.362 29.630 0.00 0.00 0.00 2.29
2416 5837 9.859427 TTGATTTGATTGCTAAAAGGATGTAAG 57.141 29.630 0.00 0.00 0.00 2.34
2417 5838 9.023962 TGATTTGATTGCTAAAAGGATGTAAGT 57.976 29.630 0.00 0.00 0.00 2.24
2446 5867 7.429633 AGATCAAAGTATGTTGGATACTCTCG 58.570 38.462 0.00 0.00 34.04 4.04
2447 5868 5.902681 TCAAAGTATGTTGGATACTCTCGG 58.097 41.667 0.00 0.00 34.04 4.63
2448 5869 5.421056 TCAAAGTATGTTGGATACTCTCGGT 59.579 40.000 0.00 0.00 34.04 4.69
2449 5870 5.934402 AAGTATGTTGGATACTCTCGGTT 57.066 39.130 0.00 0.00 34.04 4.44
2450 5871 7.123098 TCAAAGTATGTTGGATACTCTCGGTTA 59.877 37.037 0.00 0.00 34.04 2.85
2451 5872 7.598759 AAGTATGTTGGATACTCTCGGTTAT 57.401 36.000 0.00 0.00 34.04 1.89
2452 5873 6.982852 AGTATGTTGGATACTCTCGGTTATG 58.017 40.000 0.00 0.00 29.47 1.90
2453 5874 5.871396 ATGTTGGATACTCTCGGTTATGT 57.129 39.130 0.00 0.00 37.61 2.29
2454 5875 5.670792 TGTTGGATACTCTCGGTTATGTT 57.329 39.130 0.00 0.00 37.61 2.71
2455 5876 6.778834 TGTTGGATACTCTCGGTTATGTTA 57.221 37.500 0.00 0.00 37.61 2.41
2456 5877 6.567050 TGTTGGATACTCTCGGTTATGTTAC 58.433 40.000 0.00 0.00 37.61 2.50
2457 5878 5.428496 TGGATACTCTCGGTTATGTTACG 57.572 43.478 0.00 0.00 37.61 3.18
2458 5879 5.125356 TGGATACTCTCGGTTATGTTACGA 58.875 41.667 0.00 0.00 34.26 3.43
2459 5880 5.766670 TGGATACTCTCGGTTATGTTACGAT 59.233 40.000 0.00 0.00 34.74 3.73
2460 5881 6.084925 GGATACTCTCGGTTATGTTACGATG 58.915 44.000 0.00 0.00 35.93 3.84
2461 5882 3.703420 ACTCTCGGTTATGTTACGATGC 58.297 45.455 0.00 0.00 35.93 3.91
2462 5883 3.380637 ACTCTCGGTTATGTTACGATGCT 59.619 43.478 0.00 0.00 35.93 3.79
2463 5884 4.142227 ACTCTCGGTTATGTTACGATGCTT 60.142 41.667 0.00 0.00 35.93 3.91
2464 5885 4.751060 TCTCGGTTATGTTACGATGCTTT 58.249 39.130 0.00 0.00 35.93 3.51
2465 5886 4.565166 TCTCGGTTATGTTACGATGCTTTG 59.435 41.667 0.00 0.00 35.93 2.77
2466 5887 4.496360 TCGGTTATGTTACGATGCTTTGA 58.504 39.130 0.00 0.00 0.00 2.69
2467 5888 4.327898 TCGGTTATGTTACGATGCTTTGAC 59.672 41.667 0.00 0.00 0.00 3.18
2468 5889 4.092237 CGGTTATGTTACGATGCTTTGACA 59.908 41.667 0.00 0.00 0.00 3.58
2469 5890 5.390040 CGGTTATGTTACGATGCTTTGACAA 60.390 40.000 0.00 0.00 0.00 3.18
2470 5891 6.021596 GGTTATGTTACGATGCTTTGACAAG 58.978 40.000 0.00 0.00 0.00 3.16
2489 5910 2.721231 CAACTGGGTTGGCACGTG 59.279 61.111 12.28 12.28 39.56 4.49
2490 5911 3.216292 AACTGGGTTGGCACGTGC 61.216 61.111 32.15 32.15 41.14 5.34
2491 5912 3.714487 AACTGGGTTGGCACGTGCT 62.714 57.895 36.84 14.60 41.70 4.40
2492 5913 2.906897 CTGGGTTGGCACGTGCTT 60.907 61.111 36.84 0.00 41.70 3.91
2493 5914 2.441164 TGGGTTGGCACGTGCTTT 60.441 55.556 36.84 0.00 41.70 3.51
2494 5915 2.015227 CTGGGTTGGCACGTGCTTTT 62.015 55.000 36.84 0.00 41.70 2.27
2495 5916 1.591327 GGGTTGGCACGTGCTTTTG 60.591 57.895 36.84 1.74 41.70 2.44
2496 5917 1.591327 GGTTGGCACGTGCTTTTGG 60.591 57.895 36.84 0.82 41.70 3.28
2497 5918 1.140804 GTTGGCACGTGCTTTTGGT 59.859 52.632 36.84 0.00 41.70 3.67
2498 5919 0.459411 GTTGGCACGTGCTTTTGGTT 60.459 50.000 36.84 0.00 41.70 3.67
2499 5920 0.247736 TTGGCACGTGCTTTTGGTTT 59.752 45.000 36.84 0.00 41.70 3.27
2500 5921 0.459237 TGGCACGTGCTTTTGGTTTG 60.459 50.000 36.84 0.00 41.70 2.93
2501 5922 1.151172 GGCACGTGCTTTTGGTTTGG 61.151 55.000 36.84 0.00 41.70 3.28
2502 5923 0.459411 GCACGTGCTTTTGGTTTGGT 60.459 50.000 32.55 0.00 38.21 3.67
2503 5924 1.276415 CACGTGCTTTTGGTTTGGTG 58.724 50.000 0.82 0.00 0.00 4.17
2504 5925 0.459411 ACGTGCTTTTGGTTTGGTGC 60.459 50.000 0.00 0.00 0.00 5.01
2505 5926 1.478622 CGTGCTTTTGGTTTGGTGCG 61.479 55.000 0.00 0.00 0.00 5.34
2506 5927 0.459411 GTGCTTTTGGTTTGGTGCGT 60.459 50.000 0.00 0.00 0.00 5.24
2507 5928 1.103803 TGCTTTTGGTTTGGTGCGTA 58.896 45.000 0.00 0.00 0.00 4.42
2508 5929 1.683917 TGCTTTTGGTTTGGTGCGTAT 59.316 42.857 0.00 0.00 0.00 3.06
2509 5930 2.101582 TGCTTTTGGTTTGGTGCGTATT 59.898 40.909 0.00 0.00 0.00 1.89
2510 5931 3.127589 GCTTTTGGTTTGGTGCGTATTT 58.872 40.909 0.00 0.00 0.00 1.40
2511 5932 3.558006 GCTTTTGGTTTGGTGCGTATTTT 59.442 39.130 0.00 0.00 0.00 1.82
2512 5933 4.318475 GCTTTTGGTTTGGTGCGTATTTTC 60.318 41.667 0.00 0.00 0.00 2.29
2513 5934 4.657436 TTTGGTTTGGTGCGTATTTTCT 57.343 36.364 0.00 0.00 0.00 2.52
2514 5935 3.634568 TGGTTTGGTGCGTATTTTCTG 57.365 42.857 0.00 0.00 0.00 3.02
2515 5936 3.215151 TGGTTTGGTGCGTATTTTCTGA 58.785 40.909 0.00 0.00 0.00 3.27
2516 5937 3.823873 TGGTTTGGTGCGTATTTTCTGAT 59.176 39.130 0.00 0.00 0.00 2.90
2517 5938 4.165779 GGTTTGGTGCGTATTTTCTGATG 58.834 43.478 0.00 0.00 0.00 3.07
2518 5939 4.083003 GGTTTGGTGCGTATTTTCTGATGA 60.083 41.667 0.00 0.00 0.00 2.92
2519 5940 5.457140 GTTTGGTGCGTATTTTCTGATGAA 58.543 37.500 0.00 0.00 0.00 2.57
2520 5941 5.697473 TTGGTGCGTATTTTCTGATGAAA 57.303 34.783 0.00 0.00 40.08 2.69
2521 5942 5.041951 TGGTGCGTATTTTCTGATGAAAC 57.958 39.130 0.00 0.00 41.34 2.78
2522 5943 4.517075 TGGTGCGTATTTTCTGATGAAACA 59.483 37.500 0.00 0.00 41.34 2.83
2523 5944 5.182950 TGGTGCGTATTTTCTGATGAAACAT 59.817 36.000 0.00 0.00 41.34 2.71
2524 5945 5.512788 GGTGCGTATTTTCTGATGAAACATG 59.487 40.000 0.00 0.00 41.34 3.21
2525 5946 6.314018 GTGCGTATTTTCTGATGAAACATGA 58.686 36.000 0.00 0.00 41.34 3.07
2526 5947 6.801377 GTGCGTATTTTCTGATGAAACATGAA 59.199 34.615 0.00 0.00 41.34 2.57
2527 5948 6.801377 TGCGTATTTTCTGATGAAACATGAAC 59.199 34.615 0.00 0.00 41.34 3.18
2528 5949 6.251376 GCGTATTTTCTGATGAAACATGAACC 59.749 38.462 0.00 0.00 41.34 3.62
2529 5950 7.530010 CGTATTTTCTGATGAAACATGAACCT 58.470 34.615 0.00 0.00 41.34 3.50
2530 5951 7.693951 CGTATTTTCTGATGAAACATGAACCTC 59.306 37.037 0.00 0.00 41.34 3.85
2531 5952 5.611796 TTTCTGATGAAACATGAACCTCG 57.388 39.130 0.00 0.00 37.27 4.63
2532 5953 4.271696 TCTGATGAAACATGAACCTCGT 57.728 40.909 0.00 0.00 0.00 4.18
2533 5954 4.641396 TCTGATGAAACATGAACCTCGTT 58.359 39.130 0.00 0.00 0.00 3.85
2534 5955 5.789521 TCTGATGAAACATGAACCTCGTTA 58.210 37.500 0.00 0.00 0.00 3.18
2535 5956 6.227522 TCTGATGAAACATGAACCTCGTTAA 58.772 36.000 0.00 0.00 0.00 2.01
2536 5957 6.878923 TCTGATGAAACATGAACCTCGTTAAT 59.121 34.615 0.00 0.00 0.00 1.40
2537 5958 7.390440 TCTGATGAAACATGAACCTCGTTAATT 59.610 33.333 0.00 0.00 0.00 1.40
2538 5959 8.554835 TGATGAAACATGAACCTCGTTAATTA 57.445 30.769 0.00 0.00 0.00 1.40
2539 5960 8.664798 TGATGAAACATGAACCTCGTTAATTAG 58.335 33.333 0.00 0.00 0.00 1.73
2540 5961 8.786826 ATGAAACATGAACCTCGTTAATTAGA 57.213 30.769 0.00 0.00 0.00 2.10
2541 5962 8.610248 TGAAACATGAACCTCGTTAATTAGAA 57.390 30.769 0.00 0.00 0.00 2.10
2542 5963 9.058174 TGAAACATGAACCTCGTTAATTAGAAA 57.942 29.630 0.00 0.00 0.00 2.52
2564 5985 9.614792 AGAAATAGAGTTTACATCCACAATACC 57.385 33.333 0.00 0.00 0.00 2.73
2565 5986 8.433421 AAATAGAGTTTACATCCACAATACCG 57.567 34.615 0.00 0.00 0.00 4.02
2566 5987 5.670792 AGAGTTTACATCCACAATACCGA 57.329 39.130 0.00 0.00 0.00 4.69
2567 5988 6.235231 AGAGTTTACATCCACAATACCGAT 57.765 37.500 0.00 0.00 0.00 4.18
2568 5989 6.650120 AGAGTTTACATCCACAATACCGATT 58.350 36.000 0.00 0.00 0.00 3.34
2569 5990 7.788026 AGAGTTTACATCCACAATACCGATTA 58.212 34.615 0.00 0.00 0.00 1.75
2570 5991 8.429641 AGAGTTTACATCCACAATACCGATTAT 58.570 33.333 0.00 0.00 0.00 1.28
2571 5992 8.378172 AGTTTACATCCACAATACCGATTATG 57.622 34.615 0.00 0.00 0.00 1.90
2572 5993 7.444183 AGTTTACATCCACAATACCGATTATGG 59.556 37.037 0.00 0.00 40.49 2.74
2575 5996 4.617253 TCCACAATACCGATTATGGAGG 57.383 45.455 0.00 0.00 42.56 4.30
2576 5997 3.326588 TCCACAATACCGATTATGGAGGG 59.673 47.826 0.00 0.00 42.56 4.30
2577 5998 3.559171 CCACAATACCGATTATGGAGGGG 60.559 52.174 0.00 0.00 41.50 4.79
2578 5999 2.039879 ACAATACCGATTATGGAGGGGC 59.960 50.000 0.00 0.00 0.00 5.80
2579 6000 2.038863 ATACCGATTATGGAGGGGCA 57.961 50.000 0.00 0.00 0.00 5.36
2580 6001 1.348064 TACCGATTATGGAGGGGCAG 58.652 55.000 0.00 0.00 0.00 4.85
2581 6002 0.694444 ACCGATTATGGAGGGGCAGT 60.694 55.000 0.00 0.00 0.00 4.40
2582 6003 1.348064 CCGATTATGGAGGGGCAGTA 58.652 55.000 0.00 0.00 0.00 2.74
2583 6004 1.697432 CCGATTATGGAGGGGCAGTAA 59.303 52.381 0.00 0.00 0.00 2.24
2584 6005 2.105821 CCGATTATGGAGGGGCAGTAAA 59.894 50.000 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.031012 CCGTCTGTTGGAGCAGCA 59.969 61.111 0.00 0.00 36.49 4.41
190 193 1.905637 GGGAACGGAAATGAAGTGGT 58.094 50.000 0.00 0.00 0.00 4.16
976 1508 4.783621 GCGGTGGAGAGGCATGCA 62.784 66.667 21.36 0.00 0.00 3.96
984 1516 1.617018 CCATTGGAGAGCGGTGGAGA 61.617 60.000 0.00 0.00 31.59 3.71
989 1530 2.045926 GCACCATTGGAGAGCGGT 60.046 61.111 10.37 0.00 0.00 5.68
990 1531 2.825836 GGCACCATTGGAGAGCGG 60.826 66.667 10.37 0.00 0.00 5.52
991 1532 3.197790 CGGCACCATTGGAGAGCG 61.198 66.667 10.37 3.92 0.00 5.03
992 1533 1.372087 CTTCGGCACCATTGGAGAGC 61.372 60.000 10.37 10.05 0.00 4.09
993 1534 0.250234 TCTTCGGCACCATTGGAGAG 59.750 55.000 10.37 0.00 0.00 3.20
994 1535 0.690192 TTCTTCGGCACCATTGGAGA 59.310 50.000 10.37 0.00 0.00 3.71
995 1536 1.089920 CTTCTTCGGCACCATTGGAG 58.910 55.000 10.37 2.07 0.00 3.86
996 1537 0.690192 TCTTCTTCGGCACCATTGGA 59.310 50.000 10.37 0.00 0.00 3.53
997 1538 1.470098 CTTCTTCTTCGGCACCATTGG 59.530 52.381 0.00 0.00 0.00 3.16
1016 1557 1.073199 CCCGACTTGCCCTTCAACT 59.927 57.895 0.00 0.00 0.00 3.16
1018 1559 2.282180 GCCCGACTTGCCCTTCAA 60.282 61.111 0.00 0.00 0.00 2.69
1019 1560 2.748058 GAAGCCCGACTTGCCCTTCA 62.748 60.000 0.00 0.00 39.29 3.02
1062 1603 0.104620 ACTCCACACCCCAGTTACCT 60.105 55.000 0.00 0.00 0.00 3.08
1188 1729 5.011125 ACTCTCGATCTTTGGAAAGTTGAGA 59.989 40.000 14.44 14.44 35.99 3.27
1266 1809 6.293135 GCTTCTTCGTCTTCTTCTTTGTCATT 60.293 38.462 0.00 0.00 0.00 2.57
1271 1817 3.120854 CGGCTTCTTCGTCTTCTTCTTTG 60.121 47.826 0.00 0.00 0.00 2.77
1310 1863 1.667154 CTCCTCATCGGTCTCGCCAA 61.667 60.000 0.00 0.00 36.97 4.52
1402 1955 1.449246 CCTTCTGCTTCTGCTCCGG 60.449 63.158 0.00 0.00 40.48 5.14
1443 2000 2.036731 ATCACCGTCGAGGGACCA 59.963 61.111 29.83 13.16 46.96 4.02
1527 2117 1.676635 ATCCTTCGTCGGGTCGTCA 60.677 57.895 0.00 0.00 0.00 4.35
1833 2475 1.068588 TCGATGGGGTTAAGAGCATCG 59.931 52.381 0.06 0.06 42.67 3.84
1891 5295 1.094073 GCAGGCACAGATGAAGCGAT 61.094 55.000 0.00 0.00 0.00 4.58
1914 5318 1.882912 TGCTTCGAGAACTGCATGTT 58.117 45.000 0.00 1.82 42.38 2.71
1915 5319 2.105006 ATGCTTCGAGAACTGCATGT 57.895 45.000 10.47 0.00 43.41 3.21
1917 5321 3.754188 GAAATGCTTCGAGAACTGCAT 57.246 42.857 6.71 6.71 46.46 3.96
1934 5338 2.363680 GAGGAGAGAGATCATGCCGAAA 59.636 50.000 0.00 0.00 0.00 3.46
1976 5380 2.637382 TGTAGGTGAGGTCAGATTGCAA 59.363 45.455 0.00 0.00 0.00 4.08
1977 5381 2.256306 TGTAGGTGAGGTCAGATTGCA 58.744 47.619 0.00 0.00 0.00 4.08
1994 5403 4.360964 CGGGGTCGCACGGTTGTA 62.361 66.667 0.00 0.00 0.00 2.41
2078 5489 1.301479 GCTCGTTTCCACCGGAAGT 60.301 57.895 9.46 0.00 43.06 3.01
2100 5511 4.278669 TCCTTGGAGATCTAACTATGTCGC 59.721 45.833 0.00 0.00 0.00 5.19
2110 5521 6.385443 ACCTGTCATAATCCTTGGAGATCTA 58.615 40.000 0.00 0.00 0.00 1.98
2111 5522 5.222870 ACCTGTCATAATCCTTGGAGATCT 58.777 41.667 0.00 0.00 0.00 2.75
2112 5523 5.546526 GACCTGTCATAATCCTTGGAGATC 58.453 45.833 0.00 0.00 0.00 2.75
2113 5524 4.039730 CGACCTGTCATAATCCTTGGAGAT 59.960 45.833 0.00 0.00 0.00 2.75
2114 5525 3.384789 CGACCTGTCATAATCCTTGGAGA 59.615 47.826 0.00 0.00 0.00 3.71
2137 5548 4.641645 TGCTGTTCACTGGGCCGG 62.642 66.667 11.83 11.83 0.00 6.13
2216 5636 2.033448 AAATCCGCGTGGGCTTCA 59.967 55.556 16.49 0.00 36.88 3.02
2258 5679 0.811281 CGGATCTCAAGTTTTGGGCC 59.189 55.000 0.00 0.00 0.00 5.80
2384 5805 9.558396 TCCTTTTAGCAATCAAATCAAACATTT 57.442 25.926 0.00 0.00 0.00 2.32
2385 5806 9.729281 ATCCTTTTAGCAATCAAATCAAACATT 57.271 25.926 0.00 0.00 0.00 2.71
2386 5807 9.158233 CATCCTTTTAGCAATCAAATCAAACAT 57.842 29.630 0.00 0.00 0.00 2.71
2387 5808 8.149647 ACATCCTTTTAGCAATCAAATCAAACA 58.850 29.630 0.00 0.00 0.00 2.83
2388 5809 8.538409 ACATCCTTTTAGCAATCAAATCAAAC 57.462 30.769 0.00 0.00 0.00 2.93
2390 5811 9.859427 CTTACATCCTTTTAGCAATCAAATCAA 57.141 29.630 0.00 0.00 0.00 2.57
2391 5812 9.023962 ACTTACATCCTTTTAGCAATCAAATCA 57.976 29.630 0.00 0.00 0.00 2.57
2420 5841 8.568794 CGAGAGTATCCAACATACTTTGATCTA 58.431 37.037 0.00 0.00 35.20 1.98
2421 5842 7.429633 CGAGAGTATCCAACATACTTTGATCT 58.570 38.462 0.00 0.00 35.20 2.75
2422 5843 6.642950 CCGAGAGTATCCAACATACTTTGATC 59.357 42.308 0.00 0.00 35.20 2.92
2423 5844 6.098409 ACCGAGAGTATCCAACATACTTTGAT 59.902 38.462 0.00 0.00 35.20 2.57
2424 5845 5.421056 ACCGAGAGTATCCAACATACTTTGA 59.579 40.000 0.00 0.00 35.20 2.69
2425 5846 5.661458 ACCGAGAGTATCCAACATACTTTG 58.339 41.667 0.00 0.00 35.20 2.77
2426 5847 5.934402 ACCGAGAGTATCCAACATACTTT 57.066 39.130 0.00 0.00 35.20 2.66
2427 5848 5.934402 AACCGAGAGTATCCAACATACTT 57.066 39.130 0.00 0.00 35.20 2.24
2428 5849 6.550108 ACATAACCGAGAGTATCCAACATACT 59.450 38.462 0.00 0.00 37.53 2.12
2429 5850 6.746120 ACATAACCGAGAGTATCCAACATAC 58.254 40.000 0.00 0.00 33.66 2.39
2430 5851 6.971726 ACATAACCGAGAGTATCCAACATA 57.028 37.500 0.00 0.00 33.66 2.29
2431 5852 5.871396 ACATAACCGAGAGTATCCAACAT 57.129 39.130 0.00 0.00 33.66 2.71
2432 5853 5.670792 AACATAACCGAGAGTATCCAACA 57.329 39.130 0.00 0.00 33.66 3.33
2433 5854 5.684626 CGTAACATAACCGAGAGTATCCAAC 59.315 44.000 0.00 0.00 33.66 3.77
2434 5855 5.589855 TCGTAACATAACCGAGAGTATCCAA 59.410 40.000 0.00 0.00 33.66 3.53
2435 5856 5.125356 TCGTAACATAACCGAGAGTATCCA 58.875 41.667 0.00 0.00 33.66 3.41
2436 5857 5.679734 TCGTAACATAACCGAGAGTATCC 57.320 43.478 0.00 0.00 33.66 2.59
2437 5858 5.568296 GCATCGTAACATAACCGAGAGTATC 59.432 44.000 0.00 0.00 33.66 2.24
2438 5859 5.241064 AGCATCGTAACATAACCGAGAGTAT 59.759 40.000 0.00 0.00 33.66 2.12
2439 5860 4.577693 AGCATCGTAACATAACCGAGAGTA 59.422 41.667 0.00 0.00 33.66 2.59
2440 5861 3.380637 AGCATCGTAACATAACCGAGAGT 59.619 43.478 0.00 0.00 33.66 3.24
2441 5862 3.966154 AGCATCGTAACATAACCGAGAG 58.034 45.455 0.00 0.00 33.66 3.20
2442 5863 4.380841 AAGCATCGTAACATAACCGAGA 57.619 40.909 0.00 0.00 33.66 4.04
2443 5864 4.565166 TCAAAGCATCGTAACATAACCGAG 59.435 41.667 0.00 0.00 33.66 4.63
2444 5865 4.327898 GTCAAAGCATCGTAACATAACCGA 59.672 41.667 0.00 0.00 34.79 4.69
2445 5866 4.092237 TGTCAAAGCATCGTAACATAACCG 59.908 41.667 0.00 0.00 0.00 4.44
2446 5867 5.539582 TGTCAAAGCATCGTAACATAACC 57.460 39.130 0.00 0.00 0.00 2.85
2461 5882 1.402787 ACCCAGTTGGCTTGTCAAAG 58.597 50.000 0.00 0.00 37.83 2.77
2462 5883 1.480137 CAACCCAGTTGGCTTGTCAAA 59.520 47.619 0.00 0.00 39.56 2.69
2463 5884 1.110442 CAACCCAGTTGGCTTGTCAA 58.890 50.000 0.00 0.00 39.56 3.18
2464 5885 2.805897 CAACCCAGTTGGCTTGTCA 58.194 52.632 0.00 0.00 39.56 3.58
2472 5893 2.721231 CACGTGCCAACCCAGTTG 59.279 61.111 0.82 0.40 42.49 3.16
2473 5894 3.216292 GCACGTGCCAACCCAGTT 61.216 61.111 30.12 0.00 34.31 3.16
2474 5895 3.714487 AAGCACGTGCCAACCCAGT 62.714 57.895 35.51 13.05 43.38 4.00
2475 5896 2.015227 AAAAGCACGTGCCAACCCAG 62.015 55.000 35.51 0.00 43.38 4.45
2476 5897 2.055042 AAAAGCACGTGCCAACCCA 61.055 52.632 35.51 0.00 43.38 4.51
2477 5898 1.591327 CAAAAGCACGTGCCAACCC 60.591 57.895 35.51 8.79 43.38 4.11
2478 5899 1.591327 CCAAAAGCACGTGCCAACC 60.591 57.895 35.51 9.58 43.38 3.77
2479 5900 0.459411 AACCAAAAGCACGTGCCAAC 60.459 50.000 35.51 10.00 43.38 3.77
2480 5901 0.247736 AAACCAAAAGCACGTGCCAA 59.752 45.000 35.51 0.00 43.38 4.52
2481 5902 0.459237 CAAACCAAAAGCACGTGCCA 60.459 50.000 35.51 0.00 43.38 4.92
2482 5903 1.151172 CCAAACCAAAAGCACGTGCC 61.151 55.000 35.51 18.54 43.38 5.01
2483 5904 0.459411 ACCAAACCAAAAGCACGTGC 60.459 50.000 32.79 32.79 42.49 5.34
2484 5905 1.276415 CACCAAACCAAAAGCACGTG 58.724 50.000 12.28 12.28 0.00 4.49
2485 5906 0.459411 GCACCAAACCAAAAGCACGT 60.459 50.000 0.00 0.00 0.00 4.49
2486 5907 1.478622 CGCACCAAACCAAAAGCACG 61.479 55.000 0.00 0.00 0.00 5.34
2487 5908 0.459411 ACGCACCAAACCAAAAGCAC 60.459 50.000 0.00 0.00 0.00 4.40
2488 5909 1.103803 TACGCACCAAACCAAAAGCA 58.896 45.000 0.00 0.00 0.00 3.91
2489 5910 2.432206 ATACGCACCAAACCAAAAGC 57.568 45.000 0.00 0.00 0.00 3.51
2490 5911 5.047188 AGAAAATACGCACCAAACCAAAAG 58.953 37.500 0.00 0.00 0.00 2.27
2491 5912 4.806247 CAGAAAATACGCACCAAACCAAAA 59.194 37.500 0.00 0.00 0.00 2.44
2492 5913 4.098044 TCAGAAAATACGCACCAAACCAAA 59.902 37.500 0.00 0.00 0.00 3.28
2493 5914 3.632604 TCAGAAAATACGCACCAAACCAA 59.367 39.130 0.00 0.00 0.00 3.67
2494 5915 3.215151 TCAGAAAATACGCACCAAACCA 58.785 40.909 0.00 0.00 0.00 3.67
2495 5916 3.907894 TCAGAAAATACGCACCAAACC 57.092 42.857 0.00 0.00 0.00 3.27
2496 5917 5.041951 TCATCAGAAAATACGCACCAAAC 57.958 39.130 0.00 0.00 0.00 2.93
2497 5918 5.697473 TTCATCAGAAAATACGCACCAAA 57.303 34.783 0.00 0.00 0.00 3.28
2498 5919 5.009110 TGTTTCATCAGAAAATACGCACCAA 59.991 36.000 0.00 0.00 44.75 3.67
2499 5920 4.517075 TGTTTCATCAGAAAATACGCACCA 59.483 37.500 0.00 0.00 44.75 4.17
2500 5921 5.041951 TGTTTCATCAGAAAATACGCACC 57.958 39.130 0.00 0.00 44.75 5.01
2501 5922 6.314018 TCATGTTTCATCAGAAAATACGCAC 58.686 36.000 0.00 0.00 44.75 5.34
2502 5923 6.493449 TCATGTTTCATCAGAAAATACGCA 57.507 33.333 0.00 0.00 44.75 5.24
2503 5924 6.251376 GGTTCATGTTTCATCAGAAAATACGC 59.749 38.462 0.00 0.00 44.75 4.42
2504 5925 7.530010 AGGTTCATGTTTCATCAGAAAATACG 58.470 34.615 0.00 0.00 44.75 3.06
2505 5926 7.693951 CGAGGTTCATGTTTCATCAGAAAATAC 59.306 37.037 0.00 0.00 44.75 1.89
2506 5927 7.390440 ACGAGGTTCATGTTTCATCAGAAAATA 59.610 33.333 0.00 0.00 44.75 1.40
2507 5928 6.207417 ACGAGGTTCATGTTTCATCAGAAAAT 59.793 34.615 0.00 0.00 44.75 1.82
2508 5929 5.530915 ACGAGGTTCATGTTTCATCAGAAAA 59.469 36.000 0.00 0.00 44.75 2.29
2509 5930 5.063204 ACGAGGTTCATGTTTCATCAGAAA 58.937 37.500 0.00 0.00 41.26 2.52
2510 5931 4.641396 ACGAGGTTCATGTTTCATCAGAA 58.359 39.130 0.00 0.00 0.00 3.02
2511 5932 4.271696 ACGAGGTTCATGTTTCATCAGA 57.728 40.909 0.00 0.00 0.00 3.27
2512 5933 6.480524 TTAACGAGGTTCATGTTTCATCAG 57.519 37.500 0.00 0.00 0.00 2.90
2513 5934 7.447374 AATTAACGAGGTTCATGTTTCATCA 57.553 32.000 0.00 0.00 0.00 3.07
2514 5935 8.879759 TCTAATTAACGAGGTTCATGTTTCATC 58.120 33.333 0.00 0.00 0.00 2.92
2515 5936 8.786826 TCTAATTAACGAGGTTCATGTTTCAT 57.213 30.769 0.00 0.00 0.00 2.57
2516 5937 8.610248 TTCTAATTAACGAGGTTCATGTTTCA 57.390 30.769 0.00 0.00 0.00 2.69
2538 5959 9.614792 GGTATTGTGGATGTAAACTCTATTTCT 57.385 33.333 0.00 0.00 0.00 2.52
2539 5960 8.548721 CGGTATTGTGGATGTAAACTCTATTTC 58.451 37.037 0.00 0.00 0.00 2.17
2540 5961 8.262227 TCGGTATTGTGGATGTAAACTCTATTT 58.738 33.333 0.00 0.00 0.00 1.40
2541 5962 7.788026 TCGGTATTGTGGATGTAAACTCTATT 58.212 34.615 0.00 0.00 0.00 1.73
2542 5963 7.356089 TCGGTATTGTGGATGTAAACTCTAT 57.644 36.000 0.00 0.00 0.00 1.98
2543 5964 6.778834 TCGGTATTGTGGATGTAAACTCTA 57.221 37.500 0.00 0.00 0.00 2.43
2544 5965 5.670792 TCGGTATTGTGGATGTAAACTCT 57.329 39.130 0.00 0.00 0.00 3.24
2545 5966 6.920569 AATCGGTATTGTGGATGTAAACTC 57.079 37.500 0.00 0.00 0.00 3.01
2546 5967 8.378172 CATAATCGGTATTGTGGATGTAAACT 57.622 34.615 0.00 0.00 32.26 2.66
2556 5977 3.674997 CCCCTCCATAATCGGTATTGTG 58.325 50.000 0.00 0.00 34.82 3.33
2557 5978 2.039879 GCCCCTCCATAATCGGTATTGT 59.960 50.000 0.00 0.00 0.00 2.71
2558 5979 2.039746 TGCCCCTCCATAATCGGTATTG 59.960 50.000 0.00 0.00 0.00 1.90
2559 5980 2.305927 CTGCCCCTCCATAATCGGTATT 59.694 50.000 0.00 0.00 0.00 1.89
2560 5981 1.909302 CTGCCCCTCCATAATCGGTAT 59.091 52.381 0.00 0.00 0.00 2.73
2561 5982 1.348064 CTGCCCCTCCATAATCGGTA 58.652 55.000 0.00 0.00 0.00 4.02
2562 5983 0.694444 ACTGCCCCTCCATAATCGGT 60.694 55.000 0.00 0.00 0.00 4.69
2563 5984 1.348064 TACTGCCCCTCCATAATCGG 58.652 55.000 0.00 0.00 0.00 4.18
2564 5985 3.485463 TTTACTGCCCCTCCATAATCG 57.515 47.619 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.