Multiple sequence alignment - TraesCS1B01G350100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G350100 chr1B 100.000 4049 0 0 1 4049 580621463 580625511 0.000000e+00 7478.0
1 TraesCS1B01G350100 chr1B 78.571 140 28 2 390 528 580621990 580621852 1.550000e-14 91.6
2 TraesCS1B01G350100 chr1A 91.475 1865 94 35 761 2608 527101075 527102891 0.000000e+00 2503.0
3 TraesCS1B01G350100 chr1A 89.645 676 42 9 2615 3280 527103027 527103684 0.000000e+00 835.0
4 TraesCS1B01G350100 chr1A 84.726 419 24 13 4 392 527100368 527100776 2.280000e-102 383.0
5 TraesCS1B01G350100 chr1A 80.631 444 61 10 3613 4045 527104088 527104517 1.820000e-83 320.0
6 TraesCS1B01G350100 chr1A 96.226 53 2 0 579 631 468609980 468610032 2.000000e-13 87.9
7 TraesCS1B01G350100 chr1D 90.432 1411 62 30 743 2102 429599172 429600560 0.000000e+00 1790.0
8 TraesCS1B01G350100 chr1D 87.791 1245 95 30 2414 3621 429600669 429601893 0.000000e+00 1404.0
9 TraesCS1B01G350100 chr1D 85.185 432 18 14 1 392 429598665 429599090 6.300000e-108 401.0
10 TraesCS1B01G350100 chr1D 91.822 269 20 1 3783 4049 429601895 429602163 1.370000e-99 374.0
11 TraesCS1B01G350100 chr1D 91.111 225 16 1 2002 2226 425476829 425477049 6.580000e-78 302.0
12 TraesCS1B01G350100 chr7B 85.604 910 92 26 1412 2303 125077087 125077975 0.000000e+00 918.0
13 TraesCS1B01G350100 chr7B 90.079 252 18 4 2005 2256 64580878 64580634 1.820000e-83 320.0
14 TraesCS1B01G350100 chr7B 81.503 346 52 1 3616 3949 417872503 417872848 1.430000e-69 274.0
15 TraesCS1B01G350100 chr6B 85.259 909 98 24 1412 2303 691469443 691468554 0.000000e+00 904.0
16 TraesCS1B01G350100 chr2D 88.946 588 50 8 1717 2297 584515397 584515976 0.000000e+00 712.0
17 TraesCS1B01G350100 chr2D 91.480 223 15 1 2005 2227 488417199 488416981 1.830000e-78 303.0
18 TraesCS1B01G350100 chr4D 91.131 451 35 3 1720 2169 407023127 407022681 1.240000e-169 606.0
19 TraesCS1B01G350100 chr4D 77.934 426 72 17 1116 1536 394967807 394968215 3.130000e-61 246.0
20 TraesCS1B01G350100 chr5B 90.102 293 25 3 1720 2009 81632371 81632080 1.060000e-100 377.0
21 TraesCS1B01G350100 chr5B 89.078 293 29 2 1720 2009 687948626 687948334 1.070000e-95 361.0
22 TraesCS1B01G350100 chr5B 95.946 148 6 0 484 631 674428260 674428407 1.450000e-59 241.0
23 TraesCS1B01G350100 chr5B 98.734 79 1 0 390 468 674428304 674428226 1.520000e-29 141.0
24 TraesCS1B01G350100 chr5B 72.965 344 79 10 3663 3994 383688467 383688126 1.540000e-19 108.0
25 TraesCS1B01G350100 chr4A 89.147 258 23 2 1988 2245 26835080 26835332 2.350000e-82 316.0
26 TraesCS1B01G350100 chr4A 78.271 428 69 18 1116 1537 76627425 76627834 1.870000e-63 254.0
27 TraesCS1B01G350100 chr5D 81.266 395 61 2 3613 3995 371291680 371291287 1.410000e-79 307.0
28 TraesCS1B01G350100 chr6D 79.341 455 67 9 3612 4048 4516292 4515847 1.100000e-75 294.0
29 TraesCS1B01G350100 chr6D 77.581 339 61 5 3615 3940 134670499 134670835 1.490000e-44 191.0
30 TraesCS1B01G350100 chr3D 82.972 323 43 7 1100 1422 400313189 400312879 8.570000e-72 281.0
31 TraesCS1B01G350100 chr3D 79.104 402 59 10 3663 4048 11375150 11374758 1.870000e-63 254.0
32 TraesCS1B01G350100 chr3D 78.173 394 68 5 3615 3995 419462805 419463193 6.770000e-58 235.0
33 TraesCS1B01G350100 chr3D 90.066 151 12 2 1720 1867 558028172 558028022 4.130000e-45 193.0
34 TraesCS1B01G350100 chr3D 87.671 73 9 0 2663 2735 400311574 400311502 7.210000e-13 86.1
35 TraesCS1B01G350100 chr3A 82.663 323 44 7 1100 1422 519246416 519246106 3.990000e-70 276.0
36 TraesCS1B01G350100 chr3A 74.848 330 68 11 2417 2735 519245165 519244840 7.060000e-28 135.0
37 TraesCS1B01G350100 chr7A 97.333 150 4 0 484 633 13184416 13184267 5.190000e-64 255.0
38 TraesCS1B01G350100 chr7A 96.528 144 5 0 484 627 133627859 133627716 5.230000e-59 239.0
39 TraesCS1B01G350100 chr7A 98.734 79 1 0 390 468 13184372 13184450 1.520000e-29 141.0
40 TraesCS1B01G350100 chr7A 97.468 79 2 0 390 468 133627815 133627893 7.060000e-28 135.0
41 TraesCS1B01G350100 chr3B 81.538 325 44 10 1100 1422 525992152 525991842 1.870000e-63 254.0
42 TraesCS1B01G350100 chr3B 80.117 171 28 6 2417 2584 525990858 525990691 5.500000e-24 122.0
43 TraesCS1B01G350100 chr5A 96.622 148 3 2 484 631 51800726 51800871 1.120000e-60 244.0
44 TraesCS1B01G350100 chr5A 96.350 137 5 0 484 620 514187053 514186917 4.070000e-55 226.0
45 TraesCS1B01G350100 chr5A 88.235 153 16 2 484 636 494977248 494977098 8.940000e-42 182.0
46 TraesCS1B01G350100 chr5A 98.734 79 1 0 390 468 514187009 514187087 1.520000e-29 141.0
47 TraesCS1B01G350100 chr5A 92.708 96 5 2 390 485 51800769 51800676 1.960000e-28 137.0
48 TraesCS1B01G350100 chr5A 79.355 155 23 3 3873 4027 552059031 552058886 2.580000e-17 100.0
49 TraesCS1B01G350100 chr4B 78.851 383 66 10 3613 3981 387512470 387512851 1.120000e-60 244.0
50 TraesCS1B01G350100 chr4B 95.804 143 6 0 484 626 430396402 430396544 8.750000e-57 231.0
51 TraesCS1B01G350100 chr4B 77.317 410 72 16 1116 1519 486207203 486206809 5.270000e-54 222.0
52 TraesCS1B01G350100 chr4B 96.203 79 3 0 390 468 430396446 430396368 3.280000e-26 130.0
53 TraesCS1B01G350100 chr2A 79.876 323 50 4 3613 3923 738190885 738190566 5.270000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G350100 chr1B 580621463 580625511 4048 False 7478.00 7478 100.00000 1 4049 1 chr1B.!!$F1 4048
1 TraesCS1B01G350100 chr1A 527100368 527104517 4149 False 1010.25 2503 86.61925 4 4045 4 chr1A.!!$F2 4041
2 TraesCS1B01G350100 chr1D 429598665 429602163 3498 False 992.25 1790 88.80750 1 4049 4 chr1D.!!$F2 4048
3 TraesCS1B01G350100 chr7B 125077087 125077975 888 False 918.00 918 85.60400 1412 2303 1 chr7B.!!$F1 891
4 TraesCS1B01G350100 chr6B 691468554 691469443 889 True 904.00 904 85.25900 1412 2303 1 chr6B.!!$R1 891
5 TraesCS1B01G350100 chr2D 584515397 584515976 579 False 712.00 712 88.94600 1717 2297 1 chr2D.!!$F1 580
6 TraesCS1B01G350100 chr3A 519244840 519246416 1576 True 205.50 276 78.75550 1100 2735 2 chr3A.!!$R1 1635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 460 0.037160 GAGGGCGTTTGGTTAGGGAA 59.963 55.0 0.0 0.0 0.00 3.97 F
544 588 0.039618 TGATTTTCAGGGTGGGCTCC 59.960 55.0 0.0 0.0 0.00 4.70 F
546 590 0.040204 ATTTTCAGGGTGGGCTCCAG 59.960 55.0 0.0 0.0 32.34 3.86 F
2009 2388 0.109226 GGTCCGACGTCTTCTCCTTG 60.109 60.0 14.7 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1839 0.036010 GAAAGCAGAGGTAGCCAGCA 60.036 55.0 4.10 0.00 0.00 4.41 R
2461 2869 0.467384 CTTGGGTCGATGAGCTCCAT 59.533 55.0 12.15 4.76 38.43 3.41 R
2568 2976 0.951040 GTTTCACCTGGCTCACTCGG 60.951 60.0 0.00 0.00 0.00 4.63 R
3626 4297 0.318784 GTGTTGGAGAACTCGACGCT 60.319 55.0 10.79 0.00 32.79 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 108 0.595588 TTTACGCACCCTCGTCGTTA 59.404 50.000 0.00 0.00 43.15 3.18
112 142 0.734942 CGTCGTTACCGGCATCAAGT 60.735 55.000 0.00 0.00 39.06 3.16
121 151 1.066143 CCGGCATCAAGTGGTTAGAGT 60.066 52.381 0.00 0.00 0.00 3.24
305 345 2.201732 GGTGTTGTGCGATGATACGAT 58.798 47.619 0.00 0.00 35.09 3.73
306 346 2.218759 GGTGTTGTGCGATGATACGATC 59.781 50.000 0.00 0.00 35.09 3.69
307 347 2.097877 GTGTTGTGCGATGATACGATCG 60.098 50.000 14.88 14.88 46.54 3.69
358 402 2.912956 TGAGTGCCCTTTCCTTCTATGT 59.087 45.455 0.00 0.00 0.00 2.29
359 403 4.101114 TGAGTGCCCTTTCCTTCTATGTA 58.899 43.478 0.00 0.00 0.00 2.29
367 411 0.750850 TCCTTCTATGTACGCAGGGC 59.249 55.000 0.00 0.00 0.00 5.19
368 412 0.753262 CCTTCTATGTACGCAGGGCT 59.247 55.000 0.00 0.00 0.00 5.19
378 422 1.195115 ACGCAGGGCTTGATCTCTTA 58.805 50.000 0.00 0.00 0.00 2.10
386 430 4.163268 AGGGCTTGATCTCTTAAAGTCTCC 59.837 45.833 0.00 0.00 0.00 3.71
387 431 4.163268 GGGCTTGATCTCTTAAAGTCTCCT 59.837 45.833 0.00 0.00 0.00 3.69
388 432 5.338789 GGGCTTGATCTCTTAAAGTCTCCTT 60.339 44.000 0.00 0.00 0.00 3.36
389 433 6.176896 GGCTTGATCTCTTAAAGTCTCCTTT 58.823 40.000 0.00 0.00 43.30 3.11
390 434 6.315144 GGCTTGATCTCTTAAAGTCTCCTTTC 59.685 42.308 0.00 0.00 41.18 2.62
391 435 6.876257 GCTTGATCTCTTAAAGTCTCCTTTCA 59.124 38.462 0.00 0.00 41.18 2.69
392 436 7.064490 GCTTGATCTCTTAAAGTCTCCTTTCAG 59.936 40.741 0.00 0.00 41.18 3.02
393 437 6.940739 TGATCTCTTAAAGTCTCCTTTCAGG 58.059 40.000 0.00 0.00 41.18 3.86
394 438 5.746990 TCTCTTAAAGTCTCCTTTCAGGG 57.253 43.478 0.00 0.00 41.18 4.45
395 439 4.532521 TCTCTTAAAGTCTCCTTTCAGGGG 59.467 45.833 0.00 0.00 41.18 4.79
396 440 3.587506 TCTTAAAGTCTCCTTTCAGGGGG 59.412 47.826 0.00 0.00 41.18 5.40
410 454 4.295199 GGGGGAGGGCGTTTGGTT 62.295 66.667 0.00 0.00 0.00 3.67
411 455 2.758434 GGGGAGGGCGTTTGGTTA 59.242 61.111 0.00 0.00 0.00 2.85
412 456 1.378119 GGGGAGGGCGTTTGGTTAG 60.378 63.158 0.00 0.00 0.00 2.34
413 457 1.378119 GGGAGGGCGTTTGGTTAGG 60.378 63.158 0.00 0.00 0.00 2.69
414 458 1.378119 GGAGGGCGTTTGGTTAGGG 60.378 63.158 0.00 0.00 0.00 3.53
415 459 1.681076 GAGGGCGTTTGGTTAGGGA 59.319 57.895 0.00 0.00 0.00 4.20
416 460 0.037160 GAGGGCGTTTGGTTAGGGAA 59.963 55.000 0.00 0.00 0.00 3.97
417 461 0.479378 AGGGCGTTTGGTTAGGGAAA 59.521 50.000 0.00 0.00 0.00 3.13
418 462 1.133419 AGGGCGTTTGGTTAGGGAAAA 60.133 47.619 0.00 0.00 0.00 2.29
419 463 1.271379 GGGCGTTTGGTTAGGGAAAAG 59.729 52.381 0.00 0.00 0.00 2.27
420 464 2.232399 GGCGTTTGGTTAGGGAAAAGA 58.768 47.619 0.00 0.00 0.00 2.52
421 465 2.624364 GGCGTTTGGTTAGGGAAAAGAA 59.376 45.455 0.00 0.00 0.00 2.52
422 466 3.305131 GGCGTTTGGTTAGGGAAAAGAAG 60.305 47.826 0.00 0.00 0.00 2.85
423 467 3.305131 GCGTTTGGTTAGGGAAAAGAAGG 60.305 47.826 0.00 0.00 0.00 3.46
424 468 4.139038 CGTTTGGTTAGGGAAAAGAAGGA 58.861 43.478 0.00 0.00 0.00 3.36
425 469 4.765339 CGTTTGGTTAGGGAAAAGAAGGAT 59.235 41.667 0.00 0.00 0.00 3.24
426 470 5.243060 CGTTTGGTTAGGGAAAAGAAGGATT 59.757 40.000 0.00 0.00 0.00 3.01
427 471 6.431852 CGTTTGGTTAGGGAAAAGAAGGATTA 59.568 38.462 0.00 0.00 0.00 1.75
428 472 7.574404 CGTTTGGTTAGGGAAAAGAAGGATTAC 60.574 40.741 0.00 0.00 0.00 1.89
429 473 5.493809 TGGTTAGGGAAAAGAAGGATTACG 58.506 41.667 0.00 0.00 0.00 3.18
430 474 5.013391 TGGTTAGGGAAAAGAAGGATTACGT 59.987 40.000 0.00 0.00 0.00 3.57
431 475 6.213195 TGGTTAGGGAAAAGAAGGATTACGTA 59.787 38.462 0.00 0.00 0.00 3.57
432 476 6.760298 GGTTAGGGAAAAGAAGGATTACGTAG 59.240 42.308 0.00 0.00 0.00 3.51
433 477 5.354842 AGGGAAAAGAAGGATTACGTAGG 57.645 43.478 0.00 0.00 0.00 3.18
434 478 5.028131 AGGGAAAAGAAGGATTACGTAGGA 58.972 41.667 0.00 0.00 0.00 2.94
435 479 5.666265 AGGGAAAAGAAGGATTACGTAGGAT 59.334 40.000 0.00 0.00 0.00 3.24
436 480 6.842807 AGGGAAAAGAAGGATTACGTAGGATA 59.157 38.462 0.00 0.00 0.00 2.59
437 481 6.927936 GGGAAAAGAAGGATTACGTAGGATAC 59.072 42.308 0.00 0.00 38.50 2.24
438 482 7.418254 GGGAAAAGAAGGATTACGTAGGATACA 60.418 40.741 0.00 0.00 43.24 2.29
439 483 8.148999 GGAAAAGAAGGATTACGTAGGATACAT 58.851 37.037 0.00 0.00 43.24 2.29
442 486 9.978044 AAAGAAGGATTACGTAGGATACATAAC 57.022 33.333 0.00 0.00 43.24 1.89
443 487 8.701908 AGAAGGATTACGTAGGATACATAACA 57.298 34.615 0.00 0.00 43.24 2.41
444 488 8.794553 AGAAGGATTACGTAGGATACATAACAG 58.205 37.037 0.00 0.00 43.24 3.16
445 489 6.921914 AGGATTACGTAGGATACATAACAGC 58.078 40.000 0.00 0.00 43.24 4.40
446 490 6.492429 AGGATTACGTAGGATACATAACAGCA 59.508 38.462 0.00 0.00 43.24 4.41
447 491 7.178628 AGGATTACGTAGGATACATAACAGCAT 59.821 37.037 0.00 0.00 43.24 3.79
448 492 7.817962 GGATTACGTAGGATACATAACAGCATT 59.182 37.037 0.00 0.00 43.24 3.56
449 493 9.850628 GATTACGTAGGATACATAACAGCATTA 57.149 33.333 0.00 0.00 43.24 1.90
450 494 9.635520 ATTACGTAGGATACATAACAGCATTAC 57.364 33.333 0.00 0.00 43.24 1.89
451 495 6.147581 ACGTAGGATACATAACAGCATTACG 58.852 40.000 0.00 0.00 43.24 3.18
452 496 6.147581 CGTAGGATACATAACAGCATTACGT 58.852 40.000 0.00 0.00 43.24 3.57
453 497 7.041167 ACGTAGGATACATAACAGCATTACGTA 60.041 37.037 0.00 0.00 43.24 3.57
454 498 7.804600 CGTAGGATACATAACAGCATTACGTAA 59.195 37.037 11.02 11.02 43.24 3.18
455 499 9.125906 GTAGGATACATAACAGCATTACGTAAG 57.874 37.037 14.25 7.20 42.43 2.34
472 516 5.470845 CGTAAGTCTAGCATTTTTCAGGG 57.529 43.478 0.00 0.00 0.00 4.45
473 517 4.935808 CGTAAGTCTAGCATTTTTCAGGGT 59.064 41.667 0.00 0.00 0.00 4.34
474 518 5.163854 CGTAAGTCTAGCATTTTTCAGGGTG 60.164 44.000 0.00 0.00 0.00 4.61
475 519 3.690460 AGTCTAGCATTTTTCAGGGTGG 58.310 45.455 0.00 0.00 0.00 4.61
476 520 2.755103 GTCTAGCATTTTTCAGGGTGGG 59.245 50.000 0.00 0.00 0.00 4.61
477 521 1.478105 CTAGCATTTTTCAGGGTGGGC 59.522 52.381 0.00 0.00 0.00 5.36
478 522 1.194121 AGCATTTTTCAGGGTGGGCC 61.194 55.000 0.00 0.00 0.00 5.80
493 537 4.773209 GCCCCAGCCTACGTAATC 57.227 61.111 0.00 0.00 0.00 1.75
494 538 1.070957 GCCCCAGCCTACGTAATCC 59.929 63.158 0.00 0.00 0.00 3.01
495 539 1.408453 GCCCCAGCCTACGTAATCCT 61.408 60.000 0.00 0.00 0.00 3.24
496 540 1.129058 CCCCAGCCTACGTAATCCTT 58.871 55.000 0.00 0.00 0.00 3.36
497 541 1.070289 CCCCAGCCTACGTAATCCTTC 59.930 57.143 0.00 0.00 0.00 3.46
498 542 2.040178 CCCAGCCTACGTAATCCTTCT 58.960 52.381 0.00 0.00 0.00 2.85
499 543 2.434702 CCCAGCCTACGTAATCCTTCTT 59.565 50.000 0.00 0.00 0.00 2.52
500 544 3.118371 CCCAGCCTACGTAATCCTTCTTT 60.118 47.826 0.00 0.00 0.00 2.52
501 545 4.514401 CCAGCCTACGTAATCCTTCTTTT 58.486 43.478 0.00 0.00 0.00 2.27
502 546 4.571176 CCAGCCTACGTAATCCTTCTTTTC 59.429 45.833 0.00 0.00 0.00 2.29
503 547 4.571176 CAGCCTACGTAATCCTTCTTTTCC 59.429 45.833 0.00 0.00 0.00 3.13
504 548 3.875727 GCCTACGTAATCCTTCTTTTCCC 59.124 47.826 0.00 0.00 0.00 3.97
505 549 4.383880 GCCTACGTAATCCTTCTTTTCCCT 60.384 45.833 0.00 0.00 0.00 4.20
506 550 5.163374 GCCTACGTAATCCTTCTTTTCCCTA 60.163 44.000 0.00 0.00 0.00 3.53
507 551 6.631088 GCCTACGTAATCCTTCTTTTCCCTAA 60.631 42.308 0.00 0.00 0.00 2.69
508 552 6.760298 CCTACGTAATCCTTCTTTTCCCTAAC 59.240 42.308 0.00 0.00 0.00 2.34
509 553 5.494724 ACGTAATCCTTCTTTTCCCTAACC 58.505 41.667 0.00 0.00 0.00 2.85
510 554 5.013391 ACGTAATCCTTCTTTTCCCTAACCA 59.987 40.000 0.00 0.00 0.00 3.67
511 555 5.941647 CGTAATCCTTCTTTTCCCTAACCAA 59.058 40.000 0.00 0.00 0.00 3.67
512 556 6.431852 CGTAATCCTTCTTTTCCCTAACCAAA 59.568 38.462 0.00 0.00 0.00 3.28
513 557 6.665992 AATCCTTCTTTTCCCTAACCAAAC 57.334 37.500 0.00 0.00 0.00 2.93
514 558 4.139038 TCCTTCTTTTCCCTAACCAAACG 58.861 43.478 0.00 0.00 0.00 3.60
515 559 3.305131 CCTTCTTTTCCCTAACCAAACGC 60.305 47.826 0.00 0.00 0.00 4.84
516 560 2.232399 TCTTTTCCCTAACCAAACGCC 58.768 47.619 0.00 0.00 0.00 5.68
517 561 1.271379 CTTTTCCCTAACCAAACGCCC 59.729 52.381 0.00 0.00 0.00 6.13
518 562 0.479378 TTTCCCTAACCAAACGCCCT 59.521 50.000 0.00 0.00 0.00 5.19
519 563 0.037160 TTCCCTAACCAAACGCCCTC 59.963 55.000 0.00 0.00 0.00 4.30
520 564 1.378119 CCCTAACCAAACGCCCTCC 60.378 63.158 0.00 0.00 0.00 4.30
521 565 1.378119 CCTAACCAAACGCCCTCCC 60.378 63.158 0.00 0.00 0.00 4.30
522 566 1.378119 CTAACCAAACGCCCTCCCC 60.378 63.158 0.00 0.00 0.00 4.81
523 567 2.831894 CTAACCAAACGCCCTCCCCC 62.832 65.000 0.00 0.00 0.00 5.40
542 586 3.677963 CTGATTTTCAGGGTGGGCT 57.322 52.632 0.00 0.00 40.71 5.19
543 587 1.467920 CTGATTTTCAGGGTGGGCTC 58.532 55.000 0.00 0.00 40.71 4.70
544 588 0.039618 TGATTTTCAGGGTGGGCTCC 59.960 55.000 0.00 0.00 0.00 4.70
545 589 0.039618 GATTTTCAGGGTGGGCTCCA 59.960 55.000 2.29 0.00 0.00 3.86
546 590 0.040204 ATTTTCAGGGTGGGCTCCAG 59.960 55.000 0.00 0.00 32.34 3.86
561 605 3.669536 GCTCCAGCCTTCACTAATATCC 58.330 50.000 0.00 0.00 34.31 2.59
562 606 3.071602 GCTCCAGCCTTCACTAATATCCA 59.928 47.826 0.00 0.00 34.31 3.41
563 607 4.444876 GCTCCAGCCTTCACTAATATCCAA 60.445 45.833 0.00 0.00 34.31 3.53
564 608 5.747248 GCTCCAGCCTTCACTAATATCCAAT 60.747 44.000 0.00 0.00 34.31 3.16
565 609 6.266131 TCCAGCCTTCACTAATATCCAATT 57.734 37.500 0.00 0.00 0.00 2.32
566 610 7.387265 TCCAGCCTTCACTAATATCCAATTA 57.613 36.000 0.00 0.00 0.00 1.40
567 611 7.811282 TCCAGCCTTCACTAATATCCAATTAA 58.189 34.615 0.00 0.00 0.00 1.40
568 612 8.278639 TCCAGCCTTCACTAATATCCAATTAAA 58.721 33.333 0.00 0.00 0.00 1.52
569 613 8.571336 CCAGCCTTCACTAATATCCAATTAAAG 58.429 37.037 0.00 0.00 0.00 1.85
570 614 8.571336 CAGCCTTCACTAATATCCAATTAAAGG 58.429 37.037 0.00 0.00 34.13 3.11
571 615 7.371159 GCCTTCACTAATATCCAATTAAAGGC 58.629 38.462 12.45 12.45 45.58 4.35
572 616 8.697507 CCTTCACTAATATCCAATTAAAGGCT 57.302 34.615 0.00 0.00 0.00 4.58
573 617 8.571336 CCTTCACTAATATCCAATTAAAGGCTG 58.429 37.037 0.00 0.00 0.00 4.85
574 618 7.510549 TCACTAATATCCAATTAAAGGCTGC 57.489 36.000 0.00 0.00 0.00 5.25
575 619 6.490040 TCACTAATATCCAATTAAAGGCTGCC 59.510 38.462 11.65 11.65 0.00 4.85
576 620 6.265196 CACTAATATCCAATTAAAGGCTGCCA 59.735 38.462 22.65 0.00 0.00 4.92
577 621 6.838612 ACTAATATCCAATTAAAGGCTGCCAA 59.161 34.615 22.65 6.94 0.00 4.52
578 622 3.893326 ATCCAATTAAAGGCTGCCAAC 57.107 42.857 22.65 0.00 0.00 3.77
579 623 2.888212 TCCAATTAAAGGCTGCCAACT 58.112 42.857 22.65 6.94 0.00 3.16
580 624 2.825532 TCCAATTAAAGGCTGCCAACTC 59.174 45.455 22.65 0.00 0.00 3.01
581 625 2.562298 CCAATTAAAGGCTGCCAACTCA 59.438 45.455 22.65 0.38 0.00 3.41
582 626 3.196254 CCAATTAAAGGCTGCCAACTCAT 59.804 43.478 22.65 3.00 0.00 2.90
583 627 4.322953 CCAATTAAAGGCTGCCAACTCATT 60.323 41.667 22.65 9.14 0.00 2.57
584 628 5.240121 CAATTAAAGGCTGCCAACTCATTT 58.760 37.500 22.65 13.44 0.00 2.32
585 629 4.953940 TTAAAGGCTGCCAACTCATTTT 57.046 36.364 22.65 12.72 0.00 1.82
586 630 6.603940 ATTAAAGGCTGCCAACTCATTTTA 57.396 33.333 22.65 11.71 0.00 1.52
587 631 6.603940 TTAAAGGCTGCCAACTCATTTTAT 57.396 33.333 22.65 0.00 0.00 1.40
588 632 5.488262 AAAGGCTGCCAACTCATTTTATT 57.512 34.783 22.65 0.00 0.00 1.40
589 633 4.725790 AGGCTGCCAACTCATTTTATTC 57.274 40.909 22.65 0.00 0.00 1.75
590 634 3.129287 AGGCTGCCAACTCATTTTATTCG 59.871 43.478 22.65 0.00 0.00 3.34
591 635 3.119495 GGCTGCCAACTCATTTTATTCGT 60.119 43.478 15.17 0.00 0.00 3.85
592 636 4.095782 GGCTGCCAACTCATTTTATTCGTA 59.904 41.667 15.17 0.00 0.00 3.43
593 637 5.392595 GGCTGCCAACTCATTTTATTCGTAA 60.393 40.000 15.17 0.00 0.00 3.18
594 638 5.739161 GCTGCCAACTCATTTTATTCGTAAG 59.261 40.000 0.00 0.00 0.00 2.34
623 667 8.382875 ACGTAAAAATATTTTCGTAGGTGTAGC 58.617 33.333 20.02 2.41 46.30 3.58
624 668 8.382130 CGTAAAAATATTTTCGTAGGTGTAGCA 58.618 33.333 13.68 0.00 35.42 3.49
627 671 9.567848 AAAAATATTTTCGTAGGTGTAGCATTG 57.432 29.630 13.68 0.00 0.00 2.82
628 672 4.616181 ATTTTCGTAGGTGTAGCATTGC 57.384 40.909 0.00 0.00 0.00 3.56
629 673 3.328382 TTTCGTAGGTGTAGCATTGCT 57.672 42.857 16.63 16.63 43.41 3.91
630 674 2.579207 TCGTAGGTGTAGCATTGCTC 57.421 50.000 15.81 7.72 40.44 4.26
631 675 1.136305 TCGTAGGTGTAGCATTGCTCC 59.864 52.381 15.81 10.58 40.44 4.70
632 676 1.137086 CGTAGGTGTAGCATTGCTCCT 59.863 52.381 15.81 17.36 40.44 3.69
633 677 2.799917 CGTAGGTGTAGCATTGCTCCTC 60.800 54.545 15.81 4.49 40.44 3.71
634 678 0.543749 AGGTGTAGCATTGCTCCTCC 59.456 55.000 15.81 14.06 40.44 4.30
647 691 0.695347 CTCCTCCTTTCAAGTGGGCT 59.305 55.000 0.00 0.00 0.00 5.19
673 718 0.948678 TGCCAAACTGCCGAGTAAAC 59.051 50.000 0.00 0.00 0.00 2.01
680 725 2.669364 ACTGCCGAGTAAACGTTAGTG 58.331 47.619 0.00 0.00 0.00 2.74
681 726 2.294233 ACTGCCGAGTAAACGTTAGTGA 59.706 45.455 0.00 0.00 0.00 3.41
708 756 6.129457 GCTTGAAATTGTGAATGTACACGAAC 60.129 38.462 0.00 0.00 42.86 3.95
722 770 4.657075 ACACGAACGATTACAATTGTCC 57.343 40.909 15.85 4.99 31.85 4.02
723 771 3.122278 ACACGAACGATTACAATTGTCCG 59.878 43.478 15.85 18.26 36.70 4.79
738 786 7.653647 ACAATTGTCCGTAATCTAGAGATCTC 58.346 38.462 15.29 15.29 32.75 2.75
740 788 6.869315 TTGTCCGTAATCTAGAGATCTCTG 57.131 41.667 31.46 21.36 40.71 3.35
741 789 4.757657 TGTCCGTAATCTAGAGATCTCTGC 59.242 45.833 31.46 10.68 40.71 4.26
753 801 2.229062 AGATCTCTGCGTTTTCTGTCGA 59.771 45.455 0.00 0.00 0.00 4.20
754 802 2.724977 TCTCTGCGTTTTCTGTCGAT 57.275 45.000 0.00 0.00 0.00 3.59
772 994 2.529090 CGATCGGCTTAGTTACGTGTTC 59.471 50.000 7.38 0.00 0.00 3.18
782 1004 6.345882 GCTTAGTTACGTGTTCACTTCTTCTG 60.346 42.308 0.00 0.00 0.00 3.02
783 1005 3.802685 AGTTACGTGTTCACTTCTTCTGC 59.197 43.478 0.00 0.00 0.00 4.26
784 1006 2.309528 ACGTGTTCACTTCTTCTGCA 57.690 45.000 0.00 0.00 0.00 4.41
785 1007 2.838736 ACGTGTTCACTTCTTCTGCAT 58.161 42.857 0.00 0.00 0.00 3.96
786 1008 3.990092 ACGTGTTCACTTCTTCTGCATA 58.010 40.909 0.00 0.00 0.00 3.14
787 1009 4.569943 ACGTGTTCACTTCTTCTGCATAT 58.430 39.130 0.00 0.00 0.00 1.78
788 1010 4.389992 ACGTGTTCACTTCTTCTGCATATG 59.610 41.667 0.00 0.00 0.00 1.78
789 1011 4.201753 CGTGTTCACTTCTTCTGCATATGG 60.202 45.833 4.56 0.00 0.00 2.74
822 1049 4.184079 AGTCAAAGCCATCAATTGCTTC 57.816 40.909 0.00 0.00 46.58 3.86
823 1050 2.919229 GTCAAAGCCATCAATTGCTTCG 59.081 45.455 0.00 0.00 46.58 3.79
824 1051 2.557924 TCAAAGCCATCAATTGCTTCGT 59.442 40.909 0.00 0.00 46.58 3.85
825 1052 3.755905 TCAAAGCCATCAATTGCTTCGTA 59.244 39.130 0.00 0.00 46.58 3.43
826 1053 3.764885 AAGCCATCAATTGCTTCGTAC 57.235 42.857 0.00 0.00 44.12 3.67
827 1054 2.991250 AGCCATCAATTGCTTCGTACT 58.009 42.857 0.00 0.00 32.94 2.73
1329 1573 3.345808 CACCACCGCAACCTCGTG 61.346 66.667 0.00 0.00 0.00 4.35
1452 1773 3.240134 GACGCTGCTGGACTGGGAA 62.240 63.158 0.00 0.00 34.70 3.97
1539 1860 1.482593 GCTGGCTACCTCTGCTTTCTA 59.517 52.381 0.00 0.00 0.00 2.10
1592 1927 1.860950 CAACTTGTGACTGACTGACGG 59.139 52.381 0.00 0.00 0.00 4.79
1600 1935 2.280119 TGACTGACGGTGCACTGC 60.280 61.111 25.67 17.78 0.00 4.40
1601 1936 3.044305 GACTGACGGTGCACTGCC 61.044 66.667 25.67 15.87 0.00 4.85
1606 1966 4.626081 ACGGTGCACTGCCTGGTC 62.626 66.667 25.67 0.12 0.00 4.02
1609 1969 2.427320 GTGCACTGCCTGGTCTCA 59.573 61.111 10.32 0.00 0.00 3.27
1611 1971 0.607489 GTGCACTGCCTGGTCTCATT 60.607 55.000 10.32 0.00 0.00 2.57
1665 2025 0.962356 AGGCGGCAAACATCCTTCTG 60.962 55.000 13.08 0.00 0.00 3.02
1973 2352 2.025418 GCCGGAGTACACCAACACG 61.025 63.158 5.05 0.00 0.00 4.49
1976 2355 1.808531 CGGAGTACACCAACACGGGA 61.809 60.000 10.13 0.00 40.22 5.14
2009 2388 0.109226 GGTCCGACGTCTTCTCCTTG 60.109 60.000 14.70 0.00 0.00 3.61
2102 2481 0.901124 CTCTGGTCTCTTGGGTGAGG 59.099 60.000 0.00 0.00 34.98 3.86
2257 2643 5.426509 TGACATTTCTCCTCCATGACTACAT 59.573 40.000 0.00 0.00 37.19 2.29
2322 2711 3.896888 TGCAGTGGGAAAATCACAAATCT 59.103 39.130 0.00 0.00 37.58 2.40
2339 2728 1.374758 CTGTCCACGAGTTCCTGCC 60.375 63.158 0.00 0.00 0.00 4.85
2385 2774 5.509716 TCTCGATGATTACCTTTTCGCTA 57.490 39.130 0.00 0.00 0.00 4.26
2388 2777 4.051922 CGATGATTACCTTTTCGCTAGCT 58.948 43.478 13.93 0.00 0.00 3.32
2406 2795 6.345408 CGCTAGCTTCTTCGTCTGATTATTTC 60.345 42.308 13.93 0.00 0.00 2.17
2452 2860 0.962855 GACAAAAGCTCTGGAGGGGC 60.963 60.000 0.00 0.00 0.00 5.80
2458 2866 2.596851 GCTCTGGAGGGGCAACTCA 61.597 63.158 10.07 0.00 42.85 3.41
2612 3031 5.120208 CACTTCCACAACATTCCTACTTACG 59.880 44.000 0.00 0.00 0.00 3.18
2622 3170 4.595762 TTCCTACTTACGCACTTGAGTT 57.404 40.909 0.00 0.00 0.00 3.01
2624 3172 4.553323 TCCTACTTACGCACTTGAGTTTC 58.447 43.478 0.00 0.00 0.00 2.78
2652 3200 2.257286 CTAACTGGCCATGCACGTGC 62.257 60.000 33.11 33.11 42.50 5.34
2691 3245 1.455217 GTACCTGGAGGGCGAGCTA 60.455 63.158 0.00 0.00 40.27 3.32
2757 3311 4.901123 CACGACGCCACCACCACA 62.901 66.667 0.00 0.00 0.00 4.17
3103 3658 9.924650 TTTTGGAACTGAGAGTTAGATTAGTAC 57.075 33.333 0.00 0.00 38.80 2.73
3133 3690 4.993905 ACGTATTGCCTTTGGATTTTAGC 58.006 39.130 0.00 0.00 0.00 3.09
3134 3691 4.461081 ACGTATTGCCTTTGGATTTTAGCA 59.539 37.500 0.00 0.00 0.00 3.49
3167 3727 3.401385 ACATTCATTGGAGGGGAGAGAT 58.599 45.455 0.00 0.00 0.00 2.75
3285 3846 7.219154 CAGTTGTGACGTTAGAACATCTAGATC 59.781 40.741 20.09 0.00 29.56 2.75
3286 3847 5.807344 TGTGACGTTAGAACATCTAGATCG 58.193 41.667 1.03 4.27 29.56 3.69
3318 3902 1.187087 ACCCCTCTCGAACAGATGAC 58.813 55.000 0.00 0.00 0.00 3.06
3319 3903 1.186200 CCCCTCTCGAACAGATGACA 58.814 55.000 0.00 0.00 0.00 3.58
3361 3975 3.740832 TCTTCGCCTGCAAATATACATCG 59.259 43.478 0.00 0.00 0.00 3.84
3362 3976 1.798223 TCGCCTGCAAATATACATCGC 59.202 47.619 0.00 0.00 0.00 4.58
3363 3977 1.800586 CGCCTGCAAATATACATCGCT 59.199 47.619 0.00 0.00 0.00 4.93
3364 3978 2.411935 CGCCTGCAAATATACATCGCTG 60.412 50.000 0.00 0.00 0.00 5.18
3365 3979 2.549754 GCCTGCAAATATACATCGCTGT 59.450 45.455 0.00 0.00 39.49 4.40
3369 3983 5.119279 CCTGCAAATATACATCGCTGTCTAC 59.881 44.000 0.00 0.00 36.79 2.59
3371 3985 5.691754 TGCAAATATACATCGCTGTCTACAG 59.308 40.000 5.73 5.73 46.40 2.74
3393 4007 3.414269 GAGATGTAAAAACCCCAACCGA 58.586 45.455 0.00 0.00 0.00 4.69
3394 4008 4.014406 GAGATGTAAAAACCCCAACCGAT 58.986 43.478 0.00 0.00 0.00 4.18
3411 4038 2.092323 CGATGTTTCCTTTCCTTCCCC 58.908 52.381 0.00 0.00 0.00 4.81
3433 4060 1.490910 CCCTATCTTTTTCCTCCCGCT 59.509 52.381 0.00 0.00 0.00 5.52
3528 4199 2.417379 CGTGTCCTCCACTCGATTCATT 60.417 50.000 0.00 0.00 43.32 2.57
3576 4247 1.378762 CCACCGGACAATTCCACCT 59.621 57.895 9.46 0.00 43.00 4.00
3579 4250 1.131303 ACCGGACAATTCCACCTCCA 61.131 55.000 9.46 0.00 43.00 3.86
3641 4312 0.241213 CTTCAGCGTCGAGTTCTCCA 59.759 55.000 0.00 0.00 0.00 3.86
3642 4313 0.671796 TTCAGCGTCGAGTTCTCCAA 59.328 50.000 0.00 0.00 0.00 3.53
3648 4319 0.313043 GTCGAGTTCTCCAACACCGA 59.687 55.000 0.00 0.00 37.45 4.69
3651 4322 0.666577 GAGTTCTCCAACACCGACCG 60.667 60.000 0.00 0.00 34.60 4.79
3654 4325 4.308458 CTCCAACACCGACCGCCA 62.308 66.667 0.00 0.00 0.00 5.69
3660 4331 2.030562 CACCGACCGCCACTTCTT 59.969 61.111 0.00 0.00 0.00 2.52
3661 4332 1.597027 CACCGACCGCCACTTCTTT 60.597 57.895 0.00 0.00 0.00 2.52
3677 4348 1.536907 TTTCTCGGCACCTACCCCA 60.537 57.895 0.00 0.00 0.00 4.96
3679 4350 3.782443 CTCGGCACCTACCCCACC 61.782 72.222 0.00 0.00 0.00 4.61
3685 4356 2.677875 ACCTACCCCACCGTCGAC 60.678 66.667 5.18 5.18 0.00 4.20
3698 4369 4.595538 TCGACAAGGCCGCACGTT 62.596 61.111 0.00 0.00 0.00 3.99
3753 4424 1.619332 GAAGACGGACCTCAACTTCCT 59.381 52.381 0.00 0.00 33.28 3.36
3754 4425 2.599408 AGACGGACCTCAACTTCCTA 57.401 50.000 0.00 0.00 0.00 2.94
3766 4437 4.200874 TCAACTTCCTAGAGATCGAGACC 58.799 47.826 0.00 0.00 0.00 3.85
3767 4438 3.217681 ACTTCCTAGAGATCGAGACCC 57.782 52.381 0.00 0.00 0.00 4.46
3772 4443 3.967335 GAGATCGAGACCCGGGCG 61.967 72.222 24.08 17.32 39.14 6.13
3788 4459 2.892640 CGGATGCGGAGTTCCTCA 59.107 61.111 0.00 0.00 34.92 3.86
3794 4465 2.892640 CGGAGTTCCTCATGCCGA 59.107 61.111 0.00 0.00 44.43 5.54
3818 4489 5.097234 AGGAAATTCGGATGGAGGAGATAT 58.903 41.667 0.00 0.00 0.00 1.63
3863 4545 3.244596 TGTTGGTCCCGATGATAACAACA 60.245 43.478 0.00 0.00 39.96 3.33
3865 4547 4.229304 TGGTCCCGATGATAACAACAAT 57.771 40.909 0.00 0.00 0.00 2.71
4001 4683 0.599558 CGGCCCCTCGACGATAAATA 59.400 55.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 51 1.136984 GTACCTGACGAGCTGGACG 59.863 63.158 1.44 0.00 38.83 4.79
100 108 0.981183 TCTAACCACTTGATGCCGGT 59.019 50.000 1.90 0.00 0.00 5.28
112 142 3.530265 ACGTGACAAACACTCTAACCA 57.470 42.857 0.00 0.00 46.24 3.67
239 278 4.498520 CCGTCGATCGCCAGCACT 62.499 66.667 11.09 0.00 38.35 4.40
307 347 1.376609 ATTTCCACCCGCATTCTCGC 61.377 55.000 0.00 0.00 0.00 5.03
308 348 0.378257 CATTTCCACCCGCATTCTCG 59.622 55.000 0.00 0.00 0.00 4.04
309 349 1.133025 CACATTTCCACCCGCATTCTC 59.867 52.381 0.00 0.00 0.00 2.87
310 350 1.176527 CACATTTCCACCCGCATTCT 58.823 50.000 0.00 0.00 0.00 2.40
318 358 0.038343 AACGCATGCACATTTCCACC 60.038 50.000 19.57 0.00 0.00 4.61
358 402 1.195115 AAGAGATCAAGCCCTGCGTA 58.805 50.000 0.00 0.00 0.00 4.42
359 403 1.195115 TAAGAGATCAAGCCCTGCGT 58.805 50.000 0.00 0.00 0.00 5.24
393 437 2.831894 CTAACCAAACGCCCTCCCCC 62.832 65.000 0.00 0.00 0.00 5.40
394 438 1.378119 CTAACCAAACGCCCTCCCC 60.378 63.158 0.00 0.00 0.00 4.81
395 439 1.378119 CCTAACCAAACGCCCTCCC 60.378 63.158 0.00 0.00 0.00 4.30
396 440 1.378119 CCCTAACCAAACGCCCTCC 60.378 63.158 0.00 0.00 0.00 4.30
397 441 0.037160 TTCCCTAACCAAACGCCCTC 59.963 55.000 0.00 0.00 0.00 4.30
398 442 0.479378 TTTCCCTAACCAAACGCCCT 59.521 50.000 0.00 0.00 0.00 5.19
399 443 1.271379 CTTTTCCCTAACCAAACGCCC 59.729 52.381 0.00 0.00 0.00 6.13
400 444 2.232399 TCTTTTCCCTAACCAAACGCC 58.768 47.619 0.00 0.00 0.00 5.68
401 445 3.305131 CCTTCTTTTCCCTAACCAAACGC 60.305 47.826 0.00 0.00 0.00 4.84
402 446 4.139038 TCCTTCTTTTCCCTAACCAAACG 58.861 43.478 0.00 0.00 0.00 3.60
403 447 6.665992 AATCCTTCTTTTCCCTAACCAAAC 57.334 37.500 0.00 0.00 0.00 2.93
404 448 6.431852 CGTAATCCTTCTTTTCCCTAACCAAA 59.568 38.462 0.00 0.00 0.00 3.28
405 449 5.941647 CGTAATCCTTCTTTTCCCTAACCAA 59.058 40.000 0.00 0.00 0.00 3.67
406 450 5.013391 ACGTAATCCTTCTTTTCCCTAACCA 59.987 40.000 0.00 0.00 0.00 3.67
407 451 5.494724 ACGTAATCCTTCTTTTCCCTAACC 58.505 41.667 0.00 0.00 0.00 2.85
408 452 6.760298 CCTACGTAATCCTTCTTTTCCCTAAC 59.240 42.308 0.00 0.00 0.00 2.34
409 453 6.669154 TCCTACGTAATCCTTCTTTTCCCTAA 59.331 38.462 0.00 0.00 0.00 2.69
410 454 6.197168 TCCTACGTAATCCTTCTTTTCCCTA 58.803 40.000 0.00 0.00 0.00 3.53
411 455 5.028131 TCCTACGTAATCCTTCTTTTCCCT 58.972 41.667 0.00 0.00 0.00 4.20
412 456 5.349061 TCCTACGTAATCCTTCTTTTCCC 57.651 43.478 0.00 0.00 0.00 3.97
413 457 7.495055 TGTATCCTACGTAATCCTTCTTTTCC 58.505 38.462 0.00 0.00 0.00 3.13
416 460 9.978044 GTTATGTATCCTACGTAATCCTTCTTT 57.022 33.333 0.00 0.00 40.91 2.52
417 461 9.139734 TGTTATGTATCCTACGTAATCCTTCTT 57.860 33.333 0.00 0.00 40.91 2.52
418 462 8.701908 TGTTATGTATCCTACGTAATCCTTCT 57.298 34.615 0.00 0.00 40.91 2.85
419 463 7.541437 GCTGTTATGTATCCTACGTAATCCTTC 59.459 40.741 0.00 0.00 40.91 3.46
420 464 7.014905 TGCTGTTATGTATCCTACGTAATCCTT 59.985 37.037 0.00 0.00 40.91 3.36
421 465 6.492429 TGCTGTTATGTATCCTACGTAATCCT 59.508 38.462 0.00 0.00 40.91 3.24
422 466 6.684686 TGCTGTTATGTATCCTACGTAATCC 58.315 40.000 0.00 0.00 40.91 3.01
423 467 8.758633 AATGCTGTTATGTATCCTACGTAATC 57.241 34.615 0.00 0.04 40.91 1.75
424 468 9.635520 GTAATGCTGTTATGTATCCTACGTAAT 57.364 33.333 0.00 0.00 40.91 1.89
425 469 7.804600 CGTAATGCTGTTATGTATCCTACGTAA 59.195 37.037 0.00 0.00 37.71 3.18
426 470 7.041167 ACGTAATGCTGTTATGTATCCTACGTA 60.041 37.037 0.00 0.00 39.62 3.57
427 471 6.147581 CGTAATGCTGTTATGTATCCTACGT 58.852 40.000 0.00 0.00 0.00 3.57
428 472 6.147581 ACGTAATGCTGTTATGTATCCTACG 58.852 40.000 0.00 0.00 35.70 3.51
429 473 9.125906 CTTACGTAATGCTGTTATGTATCCTAC 57.874 37.037 8.76 0.00 0.00 3.18
430 474 8.853126 ACTTACGTAATGCTGTTATGTATCCTA 58.147 33.333 8.76 2.07 0.00 2.94
431 475 7.723324 ACTTACGTAATGCTGTTATGTATCCT 58.277 34.615 8.76 1.21 0.00 3.24
432 476 7.866393 AGACTTACGTAATGCTGTTATGTATCC 59.134 37.037 8.76 7.36 0.00 2.59
433 477 8.798748 AGACTTACGTAATGCTGTTATGTATC 57.201 34.615 8.76 9.44 0.00 2.24
434 478 9.894783 CTAGACTTACGTAATGCTGTTATGTAT 57.105 33.333 8.76 0.09 0.00 2.29
435 479 7.859377 GCTAGACTTACGTAATGCTGTTATGTA 59.141 37.037 8.76 9.17 0.00 2.29
436 480 6.696148 GCTAGACTTACGTAATGCTGTTATGT 59.304 38.462 8.76 0.00 0.00 2.29
437 481 6.695713 TGCTAGACTTACGTAATGCTGTTATG 59.304 38.462 8.76 0.00 0.00 1.90
438 482 6.802608 TGCTAGACTTACGTAATGCTGTTAT 58.197 36.000 8.76 0.00 0.00 1.89
439 483 6.198650 TGCTAGACTTACGTAATGCTGTTA 57.801 37.500 8.76 0.00 0.00 2.41
440 484 5.068234 TGCTAGACTTACGTAATGCTGTT 57.932 39.130 8.76 0.00 0.00 3.16
441 485 4.713824 TGCTAGACTTACGTAATGCTGT 57.286 40.909 8.76 2.91 0.00 4.40
442 486 6.589830 AAATGCTAGACTTACGTAATGCTG 57.410 37.500 8.76 0.00 0.00 4.41
443 487 7.333423 TGAAAAATGCTAGACTTACGTAATGCT 59.667 33.333 8.76 11.24 0.00 3.79
444 488 7.461107 TGAAAAATGCTAGACTTACGTAATGC 58.539 34.615 8.76 8.96 0.00 3.56
445 489 8.116753 CCTGAAAAATGCTAGACTTACGTAATG 58.883 37.037 8.76 5.91 0.00 1.90
446 490 7.280205 CCCTGAAAAATGCTAGACTTACGTAAT 59.720 37.037 8.76 0.00 0.00 1.89
447 491 6.592607 CCCTGAAAAATGCTAGACTTACGTAA 59.407 38.462 7.94 7.94 0.00 3.18
448 492 6.103997 CCCTGAAAAATGCTAGACTTACGTA 58.896 40.000 0.00 0.00 0.00 3.57
449 493 4.935808 CCCTGAAAAATGCTAGACTTACGT 59.064 41.667 0.00 0.00 0.00 3.57
450 494 4.935808 ACCCTGAAAAATGCTAGACTTACG 59.064 41.667 0.00 0.00 0.00 3.18
451 495 5.123979 CCACCCTGAAAAATGCTAGACTTAC 59.876 44.000 0.00 0.00 0.00 2.34
452 496 5.253330 CCACCCTGAAAAATGCTAGACTTA 58.747 41.667 0.00 0.00 0.00 2.24
453 497 4.082125 CCACCCTGAAAAATGCTAGACTT 58.918 43.478 0.00 0.00 0.00 3.01
454 498 3.562176 CCCACCCTGAAAAATGCTAGACT 60.562 47.826 0.00 0.00 0.00 3.24
455 499 2.755103 CCCACCCTGAAAAATGCTAGAC 59.245 50.000 0.00 0.00 0.00 2.59
456 500 2.883888 GCCCACCCTGAAAAATGCTAGA 60.884 50.000 0.00 0.00 0.00 2.43
457 501 1.478105 GCCCACCCTGAAAAATGCTAG 59.522 52.381 0.00 0.00 0.00 3.42
458 502 1.555967 GCCCACCCTGAAAAATGCTA 58.444 50.000 0.00 0.00 0.00 3.49
459 503 1.194121 GGCCCACCCTGAAAAATGCT 61.194 55.000 0.00 0.00 0.00 3.79
460 504 1.296392 GGCCCACCCTGAAAAATGC 59.704 57.895 0.00 0.00 0.00 3.56
476 520 1.070957 GGATTACGTAGGCTGGGGC 59.929 63.158 0.00 0.00 37.82 5.80
477 521 1.070289 GAAGGATTACGTAGGCTGGGG 59.930 57.143 0.00 0.00 0.00 4.96
478 522 2.040178 AGAAGGATTACGTAGGCTGGG 58.960 52.381 0.00 0.00 0.00 4.45
479 523 3.821421 AAGAAGGATTACGTAGGCTGG 57.179 47.619 0.00 0.00 0.00 4.85
480 524 4.571176 GGAAAAGAAGGATTACGTAGGCTG 59.429 45.833 0.00 0.00 0.00 4.85
481 525 4.383880 GGGAAAAGAAGGATTACGTAGGCT 60.384 45.833 0.00 0.00 0.00 4.58
482 526 3.875727 GGGAAAAGAAGGATTACGTAGGC 59.124 47.826 0.00 0.00 0.00 3.93
483 527 5.354842 AGGGAAAAGAAGGATTACGTAGG 57.645 43.478 0.00 0.00 0.00 3.18
484 528 6.760298 GGTTAGGGAAAAGAAGGATTACGTAG 59.240 42.308 0.00 0.00 0.00 3.51
485 529 6.213195 TGGTTAGGGAAAAGAAGGATTACGTA 59.787 38.462 0.00 0.00 0.00 3.57
486 530 5.013391 TGGTTAGGGAAAAGAAGGATTACGT 59.987 40.000 0.00 0.00 0.00 3.57
487 531 5.493809 TGGTTAGGGAAAAGAAGGATTACG 58.506 41.667 0.00 0.00 0.00 3.18
488 532 7.574404 CGTTTGGTTAGGGAAAAGAAGGATTAC 60.574 40.741 0.00 0.00 0.00 1.89
489 533 6.431852 CGTTTGGTTAGGGAAAAGAAGGATTA 59.568 38.462 0.00 0.00 0.00 1.75
490 534 5.243060 CGTTTGGTTAGGGAAAAGAAGGATT 59.757 40.000 0.00 0.00 0.00 3.01
491 535 4.765339 CGTTTGGTTAGGGAAAAGAAGGAT 59.235 41.667 0.00 0.00 0.00 3.24
492 536 4.139038 CGTTTGGTTAGGGAAAAGAAGGA 58.861 43.478 0.00 0.00 0.00 3.36
493 537 3.305131 GCGTTTGGTTAGGGAAAAGAAGG 60.305 47.826 0.00 0.00 0.00 3.46
494 538 3.305131 GGCGTTTGGTTAGGGAAAAGAAG 60.305 47.826 0.00 0.00 0.00 2.85
495 539 2.624364 GGCGTTTGGTTAGGGAAAAGAA 59.376 45.455 0.00 0.00 0.00 2.52
496 540 2.232399 GGCGTTTGGTTAGGGAAAAGA 58.768 47.619 0.00 0.00 0.00 2.52
497 541 1.271379 GGGCGTTTGGTTAGGGAAAAG 59.729 52.381 0.00 0.00 0.00 2.27
498 542 1.133419 AGGGCGTTTGGTTAGGGAAAA 60.133 47.619 0.00 0.00 0.00 2.29
499 543 0.479378 AGGGCGTTTGGTTAGGGAAA 59.521 50.000 0.00 0.00 0.00 3.13
500 544 0.037160 GAGGGCGTTTGGTTAGGGAA 59.963 55.000 0.00 0.00 0.00 3.97
501 545 1.681076 GAGGGCGTTTGGTTAGGGA 59.319 57.895 0.00 0.00 0.00 4.20
502 546 1.378119 GGAGGGCGTTTGGTTAGGG 60.378 63.158 0.00 0.00 0.00 3.53
503 547 1.378119 GGGAGGGCGTTTGGTTAGG 60.378 63.158 0.00 0.00 0.00 2.69
504 548 1.378119 GGGGAGGGCGTTTGGTTAG 60.378 63.158 0.00 0.00 0.00 2.34
505 549 2.758434 GGGGAGGGCGTTTGGTTA 59.242 61.111 0.00 0.00 0.00 2.85
506 550 4.295199 GGGGGAGGGCGTTTGGTT 62.295 66.667 0.00 0.00 0.00 3.67
524 568 1.467920 GAGCCCACCCTGAAAATCAG 58.532 55.000 0.32 0.32 43.91 2.90
525 569 0.039618 GGAGCCCACCCTGAAAATCA 59.960 55.000 0.00 0.00 0.00 2.57
526 570 0.039618 TGGAGCCCACCCTGAAAATC 59.960 55.000 0.00 0.00 0.00 2.17
527 571 0.040204 CTGGAGCCCACCCTGAAAAT 59.960 55.000 0.00 0.00 0.00 1.82
528 572 1.460255 CTGGAGCCCACCCTGAAAA 59.540 57.895 0.00 0.00 0.00 2.29
529 573 3.170362 CTGGAGCCCACCCTGAAA 58.830 61.111 0.00 0.00 0.00 2.69
530 574 3.650950 GCTGGAGCCCACCCTGAA 61.651 66.667 0.00 0.00 34.31 3.02
540 584 3.071602 TGGATATTAGTGAAGGCTGGAGC 59.928 47.826 0.00 0.00 41.14 4.70
541 585 4.963318 TGGATATTAGTGAAGGCTGGAG 57.037 45.455 0.00 0.00 0.00 3.86
542 586 5.912149 ATTGGATATTAGTGAAGGCTGGA 57.088 39.130 0.00 0.00 0.00 3.86
543 587 8.463930 TTTAATTGGATATTAGTGAAGGCTGG 57.536 34.615 0.00 0.00 0.00 4.85
544 588 8.571336 CCTTTAATTGGATATTAGTGAAGGCTG 58.429 37.037 0.00 0.00 0.00 4.85
545 589 8.697507 CCTTTAATTGGATATTAGTGAAGGCT 57.302 34.615 0.00 0.00 0.00 4.58
546 590 7.371159 GCCTTTAATTGGATATTAGTGAAGGC 58.629 38.462 12.23 12.23 45.64 4.35
547 591 8.571336 CAGCCTTTAATTGGATATTAGTGAAGG 58.429 37.037 0.00 0.00 34.51 3.46
548 592 8.078596 GCAGCCTTTAATTGGATATTAGTGAAG 58.921 37.037 0.00 0.00 0.00 3.02
549 593 7.014230 GGCAGCCTTTAATTGGATATTAGTGAA 59.986 37.037 3.29 0.00 0.00 3.18
550 594 6.490040 GGCAGCCTTTAATTGGATATTAGTGA 59.510 38.462 3.29 0.00 0.00 3.41
551 595 6.265196 TGGCAGCCTTTAATTGGATATTAGTG 59.735 38.462 14.15 0.00 0.00 2.74
552 596 6.372931 TGGCAGCCTTTAATTGGATATTAGT 58.627 36.000 14.15 0.00 0.00 2.24
553 597 6.899393 TGGCAGCCTTTAATTGGATATTAG 57.101 37.500 14.15 0.00 0.00 1.73
554 598 6.838612 AGTTGGCAGCCTTTAATTGGATATTA 59.161 34.615 14.15 0.00 0.00 0.98
555 599 5.662657 AGTTGGCAGCCTTTAATTGGATATT 59.337 36.000 14.15 0.00 0.00 1.28
556 600 5.211201 AGTTGGCAGCCTTTAATTGGATAT 58.789 37.500 14.15 0.00 0.00 1.63
557 601 4.609301 AGTTGGCAGCCTTTAATTGGATA 58.391 39.130 14.15 0.00 0.00 2.59
558 602 3.444029 AGTTGGCAGCCTTTAATTGGAT 58.556 40.909 14.15 0.00 0.00 3.41
559 603 2.825532 GAGTTGGCAGCCTTTAATTGGA 59.174 45.455 14.15 0.00 0.00 3.53
560 604 2.562298 TGAGTTGGCAGCCTTTAATTGG 59.438 45.455 14.15 0.00 0.00 3.16
561 605 3.940209 TGAGTTGGCAGCCTTTAATTG 57.060 42.857 14.15 0.00 0.00 2.32
562 606 5.488262 AAATGAGTTGGCAGCCTTTAATT 57.512 34.783 14.15 3.70 0.00 1.40
563 607 5.488262 AAAATGAGTTGGCAGCCTTTAAT 57.512 34.783 14.15 0.00 0.00 1.40
564 608 4.953940 AAAATGAGTTGGCAGCCTTTAA 57.046 36.364 14.15 0.00 0.00 1.52
565 609 6.603940 AATAAAATGAGTTGGCAGCCTTTA 57.396 33.333 14.15 7.58 0.00 1.85
566 610 5.482006 GAATAAAATGAGTTGGCAGCCTTT 58.518 37.500 14.15 5.40 0.00 3.11
567 611 4.380867 CGAATAAAATGAGTTGGCAGCCTT 60.381 41.667 14.15 0.00 0.00 4.35
568 612 3.129287 CGAATAAAATGAGTTGGCAGCCT 59.871 43.478 14.15 0.00 0.00 4.58
569 613 3.119495 ACGAATAAAATGAGTTGGCAGCC 60.119 43.478 3.66 3.66 0.00 4.85
570 614 4.096732 ACGAATAAAATGAGTTGGCAGC 57.903 40.909 0.00 0.00 0.00 5.25
571 615 7.072177 TCTTACGAATAAAATGAGTTGGCAG 57.928 36.000 0.00 0.00 0.00 4.85
572 616 7.624360 ATCTTACGAATAAAATGAGTTGGCA 57.376 32.000 0.00 0.00 0.00 4.92
573 617 8.989160 GTATCTTACGAATAAAATGAGTTGGC 57.011 34.615 0.00 0.00 0.00 4.52
597 641 8.382875 GCTACACCTACGAAAATATTTTTACGT 58.617 33.333 23.05 23.05 35.63 3.57
598 642 8.382130 TGCTACACCTACGAAAATATTTTTACG 58.618 33.333 14.45 15.49 0.00 3.18
601 645 9.567848 CAATGCTACACCTACGAAAATATTTTT 57.432 29.630 14.45 2.92 0.00 1.94
602 646 7.700656 GCAATGCTACACCTACGAAAATATTTT 59.299 33.333 13.24 13.24 0.00 1.82
603 647 7.067008 AGCAATGCTACACCTACGAAAATATTT 59.933 33.333 5.69 0.00 36.99 1.40
604 648 6.542370 AGCAATGCTACACCTACGAAAATATT 59.458 34.615 5.69 0.00 36.99 1.28
605 649 6.055588 AGCAATGCTACACCTACGAAAATAT 58.944 36.000 5.69 0.00 36.99 1.28
606 650 5.424757 AGCAATGCTACACCTACGAAAATA 58.575 37.500 5.69 0.00 36.99 1.40
607 651 4.261801 AGCAATGCTACACCTACGAAAAT 58.738 39.130 5.69 0.00 36.99 1.82
608 652 3.670625 AGCAATGCTACACCTACGAAAA 58.329 40.909 5.69 0.00 36.99 2.29
609 653 3.259064 GAGCAATGCTACACCTACGAAA 58.741 45.455 8.12 0.00 39.88 3.46
610 654 2.418197 GGAGCAATGCTACACCTACGAA 60.418 50.000 13.46 0.00 39.71 3.85
611 655 1.136305 GGAGCAATGCTACACCTACGA 59.864 52.381 13.46 0.00 39.71 3.43
612 656 1.137086 AGGAGCAATGCTACACCTACG 59.863 52.381 20.85 0.00 42.99 3.51
613 657 2.483889 GGAGGAGCAATGCTACACCTAC 60.484 54.545 23.94 15.99 44.92 3.18
614 658 1.762957 GGAGGAGCAATGCTACACCTA 59.237 52.381 23.94 0.00 44.92 3.08
615 659 0.543749 GGAGGAGCAATGCTACACCT 59.456 55.000 23.94 18.60 44.92 4.00
616 660 3.086733 GGAGGAGCAATGCTACACC 57.913 57.895 20.85 19.28 42.99 4.16
617 661 2.409948 AAGGAGGAGCAATGCTACAC 57.590 50.000 20.85 13.62 42.99 2.90
618 662 2.305635 TGAAAGGAGGAGCAATGCTACA 59.694 45.455 20.85 0.00 42.99 2.74
619 663 2.991250 TGAAAGGAGGAGCAATGCTAC 58.009 47.619 9.97 9.97 39.88 3.58
620 664 3.009473 ACTTGAAAGGAGGAGCAATGCTA 59.991 43.478 8.12 0.00 39.88 3.49
621 665 2.224967 ACTTGAAAGGAGGAGCAATGCT 60.225 45.455 7.79 7.79 43.88 3.79
622 666 2.094854 CACTTGAAAGGAGGAGCAATGC 60.095 50.000 0.00 0.00 0.00 3.56
623 667 2.490903 CCACTTGAAAGGAGGAGCAATG 59.509 50.000 0.00 0.00 0.00 2.82
624 668 2.556114 CCCACTTGAAAGGAGGAGCAAT 60.556 50.000 5.63 0.00 0.00 3.56
625 669 1.202927 CCCACTTGAAAGGAGGAGCAA 60.203 52.381 5.63 0.00 0.00 3.91
626 670 0.401738 CCCACTTGAAAGGAGGAGCA 59.598 55.000 5.63 0.00 0.00 4.26
627 671 0.962855 GCCCACTTGAAAGGAGGAGC 60.963 60.000 5.15 4.19 0.00 4.70
628 672 0.695347 AGCCCACTTGAAAGGAGGAG 59.305 55.000 5.15 0.00 0.00 3.69
629 673 1.628846 GTAGCCCACTTGAAAGGAGGA 59.371 52.381 5.15 0.00 0.00 3.71
630 674 1.340114 GGTAGCCCACTTGAAAGGAGG 60.340 57.143 0.00 0.00 0.00 4.30
631 675 1.351017 TGGTAGCCCACTTGAAAGGAG 59.649 52.381 0.00 0.00 35.17 3.69
632 676 1.440618 TGGTAGCCCACTTGAAAGGA 58.559 50.000 0.00 0.00 35.17 3.36
633 677 2.286365 TTGGTAGCCCACTTGAAAGG 57.714 50.000 0.00 0.00 41.67 3.11
634 678 3.614870 GCATTTGGTAGCCCACTTGAAAG 60.615 47.826 0.00 0.00 41.67 2.62
647 691 0.600557 CGGCAGTTTGGCATTTGGTA 59.399 50.000 3.51 0.00 43.94 3.25
655 699 0.110373 CGTTTACTCGGCAGTTTGGC 60.110 55.000 0.00 0.00 39.85 4.52
656 700 1.223187 ACGTTTACTCGGCAGTTTGG 58.777 50.000 0.00 0.00 33.62 3.28
657 701 3.492011 ACTAACGTTTACTCGGCAGTTTG 59.508 43.478 5.91 0.00 33.62 2.93
658 702 3.492011 CACTAACGTTTACTCGGCAGTTT 59.508 43.478 5.91 0.00 33.62 2.66
673 718 5.688823 TCACAATTTCAAGCATCACTAACG 58.311 37.500 0.00 0.00 0.00 3.18
680 725 6.032775 CGTGTACATTCACAATTTCAAGCATC 59.967 38.462 0.00 0.00 38.12 3.91
681 726 5.858049 CGTGTACATTCACAATTTCAAGCAT 59.142 36.000 0.00 0.00 38.12 3.79
722 770 5.351233 AACGCAGAGATCTCTAGATTACG 57.649 43.478 24.69 20.55 37.98 3.18
723 771 7.378461 CAGAAAACGCAGAGATCTCTAGATTAC 59.622 40.741 24.69 13.15 37.98 1.89
738 786 0.366871 CCGATCGACAGAAAACGCAG 59.633 55.000 18.66 0.00 0.00 5.18
740 788 1.058903 GCCGATCGACAGAAAACGC 59.941 57.895 18.66 3.88 0.00 4.84
741 789 1.068474 AAGCCGATCGACAGAAAACG 58.932 50.000 18.66 0.00 0.00 3.60
753 801 3.057033 AGTGAACACGTAACTAAGCCGAT 60.057 43.478 0.00 0.00 36.20 4.18
754 802 2.294233 AGTGAACACGTAACTAAGCCGA 59.706 45.455 0.00 0.00 36.20 5.54
772 994 5.416952 ACTTTTCCCATATGCAGAAGAAGTG 59.583 40.000 19.26 9.73 0.00 3.16
782 1004 6.942532 TGACTATCAACTTTTCCCATATGC 57.057 37.500 0.00 0.00 0.00 3.14
783 1005 7.917505 GCTTTGACTATCAACTTTTCCCATATG 59.082 37.037 0.00 0.00 35.89 1.78
784 1006 7.068716 GGCTTTGACTATCAACTTTTCCCATAT 59.931 37.037 0.00 0.00 35.89 1.78
785 1007 6.377146 GGCTTTGACTATCAACTTTTCCCATA 59.623 38.462 0.00 0.00 35.89 2.74
786 1008 5.185828 GGCTTTGACTATCAACTTTTCCCAT 59.814 40.000 0.00 0.00 35.89 4.00
787 1009 4.522789 GGCTTTGACTATCAACTTTTCCCA 59.477 41.667 0.00 0.00 35.89 4.37
788 1010 4.522789 TGGCTTTGACTATCAACTTTTCCC 59.477 41.667 0.00 0.00 35.89 3.97
789 1011 5.705609 TGGCTTTGACTATCAACTTTTCC 57.294 39.130 0.00 0.00 35.89 3.13
821 1048 5.235305 GGTGATAAACCGAACTAGTACGA 57.765 43.478 0.00 0.00 39.81 3.43
872 1099 6.585695 AGTTAATGAGTTAGAAGTGACGGA 57.414 37.500 0.00 0.00 0.00 4.69
873 1100 6.645415 ACAAGTTAATGAGTTAGAAGTGACGG 59.355 38.462 0.00 0.00 0.00 4.79
875 1102 9.651718 CAAACAAGTTAATGAGTTAGAAGTGAC 57.348 33.333 0.00 0.00 0.00 3.67
876 1103 8.342634 GCAAACAAGTTAATGAGTTAGAAGTGA 58.657 33.333 0.00 0.00 0.00 3.41
879 1106 7.648142 TGGCAAACAAGTTAATGAGTTAGAAG 58.352 34.615 0.00 0.00 0.00 2.85
960 1198 2.964389 GCCGAGAAGGATGAGCGC 60.964 66.667 0.00 0.00 45.00 5.92
1329 1573 2.125512 CAGTACCCCAGCAGCGAC 60.126 66.667 0.00 0.00 0.00 5.19
1518 1839 0.036010 GAAAGCAGAGGTAGCCAGCA 60.036 55.000 4.10 0.00 0.00 4.41
1539 1860 5.809001 TCAAGCATGTAAGAACTGAAGGAT 58.191 37.500 0.00 0.00 0.00 3.24
1592 1927 0.607489 AATGAGACCAGGCAGTGCAC 60.607 55.000 18.61 9.40 0.00 4.57
1601 1936 3.199508 AGGATGACCTGAAATGAGACCAG 59.800 47.826 0.00 0.00 45.92 4.00
1665 2025 1.909700 TGGGCTCAAAGTTGTCATCC 58.090 50.000 0.00 0.00 0.00 3.51
1851 2214 1.621814 TGGTGGAGTTCTTACCCGAAG 59.378 52.381 0.00 0.00 36.38 3.79
1864 2227 3.368739 GCAAGGAAATTGGAATGGTGGAG 60.369 47.826 0.00 0.00 39.47 3.86
2009 2388 4.373116 TCCAGAAGCACGACGCCC 62.373 66.667 0.00 0.00 44.04 6.13
2102 2481 2.163613 CCAGGATTCAGGGTAAAAACGC 59.836 50.000 0.00 0.00 0.00 4.84
2135 2514 4.939439 ACAAAGAAAGTACAGTTCGTTGGT 59.061 37.500 26.23 16.57 44.01 3.67
2136 2515 5.293569 AGACAAAGAAAGTACAGTTCGTTGG 59.706 40.000 26.23 16.19 44.01 3.77
2137 2516 6.345920 AGACAAAGAAAGTACAGTTCGTTG 57.654 37.500 23.59 23.59 44.74 4.10
2138 2517 6.674760 GCAAGACAAAGAAAGTACAGTTCGTT 60.675 38.462 0.00 0.30 0.00 3.85
2322 2711 1.816863 GAGGCAGGAACTCGTGGACA 61.817 60.000 1.93 0.00 34.60 4.02
2339 2728 3.787826 CTTCAAATCAACACGTCACGAG 58.212 45.455 2.91 0.00 0.00 4.18
2385 2774 5.411781 ACGAAATAATCAGACGAAGAAGCT 58.588 37.500 0.00 0.00 0.00 3.74
2388 2777 7.758076 ACACATACGAAATAATCAGACGAAGAA 59.242 33.333 0.00 0.00 0.00 2.52
2406 2795 2.739704 CCGTGCCTGCACACATACG 61.740 63.158 21.01 6.81 46.47 3.06
2452 2860 2.286872 GATGAGCTCCATGGTGAGTTG 58.713 52.381 17.98 1.30 35.17 3.16
2458 2866 1.690219 GGGTCGATGAGCTCCATGGT 61.690 60.000 12.58 0.00 35.17 3.55
2461 2869 0.467384 CTTGGGTCGATGAGCTCCAT 59.533 55.000 12.15 4.76 38.43 3.41
2568 2976 0.951040 GTTTCACCTGGCTCACTCGG 60.951 60.000 0.00 0.00 0.00 4.63
2589 2997 5.235516 CGTAAGTAGGAATGTTGTGGAAGT 58.764 41.667 0.00 0.00 0.00 3.01
2612 3031 3.698029 TTTCTGCTGAAACTCAAGTGC 57.302 42.857 14.07 0.00 37.27 4.40
2622 3170 2.158682 TGGCCAGTTAGTTTCTGCTGAA 60.159 45.455 0.00 1.33 0.00 3.02
2624 3172 1.896220 TGGCCAGTTAGTTTCTGCTG 58.104 50.000 0.00 0.00 0.00 4.41
2640 3188 2.967929 TTTGTTGGCACGTGCATGGC 62.968 55.000 38.60 25.08 44.36 4.40
3096 3651 6.489361 AGGCAATACGTAGCAGTAGTACTAAT 59.511 38.462 3.61 0.00 0.00 1.73
3097 3652 5.824624 AGGCAATACGTAGCAGTAGTACTAA 59.175 40.000 3.61 0.00 0.00 2.24
3103 3658 3.555956 CCAAAGGCAATACGTAGCAGTAG 59.444 47.826 8.82 0.00 0.00 2.57
3141 3698 3.045634 TCCCCTCCAATGAATGTATCGT 58.954 45.455 0.00 0.00 0.00 3.73
3142 3699 3.324846 TCTCCCCTCCAATGAATGTATCG 59.675 47.826 0.00 0.00 0.00 2.92
3144 3701 4.570926 TCTCTCCCCTCCAATGAATGTAT 58.429 43.478 0.00 0.00 0.00 2.29
3145 3702 4.007581 TCTCTCCCCTCCAATGAATGTA 57.992 45.455 0.00 0.00 0.00 2.29
3146 3703 2.850833 TCTCTCCCCTCCAATGAATGT 58.149 47.619 0.00 0.00 0.00 2.71
3147 3704 5.775813 ATATCTCTCCCCTCCAATGAATG 57.224 43.478 0.00 0.00 0.00 2.67
3148 3705 8.358344 AGTATATATCTCTCCCCTCCAATGAAT 58.642 37.037 0.00 0.00 0.00 2.57
3149 3706 7.723382 AGTATATATCTCTCCCCTCCAATGAA 58.277 38.462 0.00 0.00 0.00 2.57
3191 3751 9.686683 AAATGGCAAACACTATAGAAGTTCTAT 57.313 29.630 24.99 24.99 42.05 1.98
3268 3829 3.059120 TCGGCGATCTAGATGTTCTAACG 60.059 47.826 10.74 6.67 0.00 3.18
3334 3920 6.230472 TGTATATTTGCAGGCGAAGATGTAT 58.770 36.000 10.77 2.15 0.00 2.29
3361 3975 5.351740 GGTTTTTACATCTCCTGTAGACAGC 59.648 44.000 4.03 0.00 41.30 4.40
3362 3976 5.875359 GGGTTTTTACATCTCCTGTAGACAG 59.125 44.000 2.50 2.50 41.30 3.51
3363 3977 5.280317 GGGGTTTTTACATCTCCTGTAGACA 60.280 44.000 0.00 0.00 41.30 3.41
3364 3978 5.183969 GGGGTTTTTACATCTCCTGTAGAC 58.816 45.833 0.00 0.00 41.30 2.59
3365 3979 4.847512 TGGGGTTTTTACATCTCCTGTAGA 59.152 41.667 0.00 0.00 41.30 2.59
3369 3983 3.509967 GGTTGGGGTTTTTACATCTCCTG 59.490 47.826 0.00 0.00 0.00 3.86
3371 3985 2.490509 CGGTTGGGGTTTTTACATCTCC 59.509 50.000 0.00 0.00 0.00 3.71
3393 4007 2.492753 GGTGGGGAAGGAAAGGAAACAT 60.493 50.000 0.00 0.00 0.00 2.71
3394 4008 1.133294 GGTGGGGAAGGAAAGGAAACA 60.133 52.381 0.00 0.00 0.00 2.83
3411 4038 2.919228 CGGGAGGAAAAAGATAGGGTG 58.081 52.381 0.00 0.00 0.00 4.61
3514 4185 2.632377 GGCAGAAATGAATCGAGTGGA 58.368 47.619 0.00 0.00 0.00 4.02
3567 4238 1.227383 GGGCGATGGAGGTGGAATT 59.773 57.895 0.00 0.00 0.00 2.17
3590 4261 3.554692 GTGGCAGCGGACGAATCG 61.555 66.667 0.00 0.00 0.00 3.34
3610 4281 3.197790 CTGAAGTGGCCGGATGCG 61.198 66.667 5.05 0.00 42.61 4.73
3626 4297 0.318784 GTGTTGGAGAACTCGACGCT 60.319 55.000 10.79 0.00 32.79 5.07
3641 4312 2.280592 GAAGTGGCGGTCGGTGTT 60.281 61.111 0.00 0.00 0.00 3.32
3642 4313 2.319890 AAAGAAGTGGCGGTCGGTGT 62.320 55.000 0.00 0.00 0.00 4.16
3648 4319 1.004918 CCGAGAAAGAAGTGGCGGT 60.005 57.895 0.00 0.00 34.45 5.68
3651 4322 1.578206 GGTGCCGAGAAAGAAGTGGC 61.578 60.000 0.00 0.00 45.91 5.01
3654 4325 1.275573 GGTAGGTGCCGAGAAAGAAGT 59.724 52.381 0.00 0.00 0.00 3.01
3660 4331 2.120940 TGGGGTAGGTGCCGAGAA 59.879 61.111 0.00 0.00 0.00 2.87
3661 4332 2.682494 GTGGGGTAGGTGCCGAGA 60.682 66.667 0.00 0.00 0.00 4.04
3685 4356 2.047655 TAGGAACGTGCGGCCTTG 60.048 61.111 0.00 0.00 33.28 3.61
3698 4369 0.606096 CACACCACCACATCGTAGGA 59.394 55.000 0.00 0.00 0.00 2.94
3753 4424 1.228184 GCCCGGGTCTCGATCTCTA 60.228 63.158 24.63 0.00 42.43 2.43
3754 4425 2.519780 GCCCGGGTCTCGATCTCT 60.520 66.667 24.63 0.00 42.43 3.10
3794 4465 3.115390 TCTCCTCCATCCGAATTTCCTT 58.885 45.455 0.00 0.00 0.00 3.36
3818 4489 0.895530 ATGGTCGGCTTCTTCTTCGA 59.104 50.000 0.00 0.00 0.00 3.71
3849 4531 4.094739 TCACTGCATTGTTGTTATCATCGG 59.905 41.667 3.77 0.00 0.00 4.18
3863 4545 0.322816 AACCTCGCCATCACTGCATT 60.323 50.000 0.00 0.00 0.00 3.56
3865 4547 1.375908 GAACCTCGCCATCACTGCA 60.376 57.895 0.00 0.00 0.00 4.41
3888 4570 5.686124 GCTTTAACATACTCTGGATGCTCCT 60.686 44.000 4.21 0.00 37.46 3.69
3898 4580 3.430929 CCTGCTCGGCTTTAACATACTCT 60.431 47.826 0.00 0.00 0.00 3.24
3908 4590 0.977395 AAGTACTCCTGCTCGGCTTT 59.023 50.000 0.00 0.00 0.00 3.51
3910 4592 0.323908 AGAAGTACTCCTGCTCGGCT 60.324 55.000 0.00 0.00 0.00 5.52
3950 4632 3.777522 TCCTTCTTCATCCCCTTCTTCTC 59.222 47.826 0.00 0.00 0.00 2.87
3995 4677 1.203994 CGACGGGGATCGCCTATTTAT 59.796 52.381 24.84 4.98 43.89 1.40
4001 4683 4.816984 ACTCGACGGGGATCGCCT 62.817 66.667 24.84 12.96 43.89 5.52
4029 4713 0.467474 ACTCCGAGTCACACCAGTCA 60.467 55.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.