Multiple sequence alignment - TraesCS1B01G349500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G349500 chr1B 100.000 6327 0 0 1 6327 579936239 579942565 0.000000e+00 11684.0
1 TraesCS1B01G349500 chr1B 100.000 29 0 0 5780 5808 580227686 580227714 3.000000e-03 54.7
2 TraesCS1B01G349500 chr1A 87.145 2676 181 81 1368 3966 522965011 522967600 0.000000e+00 2885.0
3 TraesCS1B01G349500 chr1A 90.584 839 44 20 4292 5101 522968350 522969182 0.000000e+00 1079.0
4 TraesCS1B01G349500 chr1A 98.014 554 10 1 1 554 441795927 441796479 0.000000e+00 961.0
5 TraesCS1B01G349500 chr1A 96.948 557 14 3 1 557 182074296 182073743 0.000000e+00 931.0
6 TraesCS1B01G349500 chr1A 91.629 669 39 5 5094 5760 522969350 522970003 0.000000e+00 909.0
7 TraesCS1B01G349500 chr1A 82.054 808 52 48 549 1309 522964220 522964981 2.520000e-168 603.0
8 TraesCS1B01G349500 chr1A 81.915 470 58 19 5755 6213 522970081 522970534 7.750000e-99 372.0
9 TraesCS1B01G349500 chr1A 84.802 329 39 5 4918 5242 524600958 524601279 2.850000e-83 320.0
10 TraesCS1B01G349500 chr1A 84.983 293 25 11 4083 4375 522968012 522968285 4.830000e-71 279.0
11 TraesCS1B01G349500 chr1A 77.336 503 78 20 5280 5756 526623458 526623950 1.350000e-66 265.0
12 TraesCS1B01G349500 chr1D 89.179 1876 130 41 4492 6327 427630782 427632624 0.000000e+00 2272.0
13 TraesCS1B01G349500 chr1D 88.987 1816 104 43 2193 3966 427628055 427629816 0.000000e+00 2158.0
14 TraesCS1B01G349500 chr1D 86.850 692 33 33 651 1309 427626926 427627592 0.000000e+00 721.0
15 TraesCS1B01G349500 chr1D 85.106 423 24 12 3967 4375 427630208 427630605 4.600000e-106 396.0
16 TraesCS1B01G349500 chr1D 95.092 163 5 1 2047 2206 427627872 427628034 2.930000e-63 254.0
17 TraesCS1B01G349500 chr6B 90.206 1358 92 19 1648 2970 157886891 157885540 0.000000e+00 1733.0
18 TraesCS1B01G349500 chr6B 89.388 1357 105 20 1648 2970 687972123 687970772 0.000000e+00 1672.0
19 TraesCS1B01G349500 chr6B 89.315 1357 106 20 1648 2970 687996238 687994887 0.000000e+00 1666.0
20 TraesCS1B01G349500 chr2B 89.551 1359 100 17 1648 2970 560723497 560724849 0.000000e+00 1685.0
21 TraesCS1B01G349500 chr2B 97.292 554 14 1 1 553 387151476 387152029 0.000000e+00 939.0
22 TraesCS1B01G349500 chr4B 97.645 552 12 1 1 552 519386816 519386266 0.000000e+00 946.0
23 TraesCS1B01G349500 chr2A 97.628 548 13 0 1 548 542559702 542560249 0.000000e+00 941.0
24 TraesCS1B01G349500 chr7B 96.959 559 14 2 1 556 477781908 477781350 0.000000e+00 935.0
25 TraesCS1B01G349500 chr7B 97.091 550 16 0 1 550 18101709 18101160 0.000000e+00 928.0
26 TraesCS1B01G349500 chr3A 97.445 548 14 0 1 548 499681857 499682404 0.000000e+00 935.0
27 TraesCS1B01G349500 chr3A 93.478 46 2 1 4668 4713 479766467 479766511 4.090000e-07 67.6
28 TraesCS1B01G349500 chr4A 97.107 553 15 1 1 553 657989668 657989117 0.000000e+00 931.0
29 TraesCS1B01G349500 chr4A 93.939 99 4 2 4289 4385 680390407 680390309 1.420000e-31 148.0
30 TraesCS1B01G349500 chr4A 93.878 98 6 0 2042 2139 742459604 742459701 1.420000e-31 148.0
31 TraesCS1B01G349500 chr4A 81.871 171 21 5 2645 2806 742460394 742460563 1.110000e-27 135.0
32 TraesCS1B01G349500 chr7D 90.244 205 6 10 2042 2235 1943239 1943440 8.140000e-64 255.0
33 TraesCS1B01G349500 chr7A 90.355 197 16 3 2042 2238 1741155 1740962 8.140000e-64 255.0
34 TraesCS1B01G349500 chr7A 78.358 134 18 9 2685 2812 1740884 1740756 6.800000e-10 76.8
35 TraesCS1B01G349500 chr5A 95.918 98 2 2 4289 4385 106146023 106145927 2.360000e-34 158.0
36 TraesCS1B01G349500 chr5A 95.000 100 3 2 4284 4382 106145769 106145671 8.490000e-34 156.0
37 TraesCS1B01G349500 chr5A 96.774 93 2 1 4288 4379 338577765 338577857 3.050000e-33 154.0
38 TraesCS1B01G349500 chr5A 80.734 109 16 4 3289 3396 537369863 537369967 5.260000e-11 80.5
39 TraesCS1B01G349500 chr2D 97.753 89 2 0 4294 4382 409599423 409599335 3.050000e-33 154.0
40 TraesCS1B01G349500 chr5D 96.739 92 2 1 4289 4380 486160697 486160787 1.100000e-32 152.0
41 TraesCS1B01G349500 chr5D 81.651 109 17 3 3289 3396 423965782 423965888 3.140000e-13 87.9
42 TraesCS1B01G349500 chr3B 96.739 92 2 1 4291 4382 526684663 526684573 1.100000e-32 152.0
43 TraesCS1B01G349500 chr5B 81.651 109 17 3 3289 3396 511836579 511836685 3.140000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G349500 chr1B 579936239 579942565 6326 False 11684.000000 11684 100.0000 1 6327 1 chr1B.!!$F1 6326
1 TraesCS1B01G349500 chr1A 522964220 522970534 6314 False 1021.166667 2885 86.3850 549 6213 6 chr1A.!!$F4 5664
2 TraesCS1B01G349500 chr1A 441795927 441796479 552 False 961.000000 961 98.0140 1 554 1 chr1A.!!$F1 553
3 TraesCS1B01G349500 chr1A 182073743 182074296 553 True 931.000000 931 96.9480 1 557 1 chr1A.!!$R1 556
4 TraesCS1B01G349500 chr1D 427626926 427632624 5698 False 1160.200000 2272 89.0428 651 6327 5 chr1D.!!$F1 5676
5 TraesCS1B01G349500 chr6B 157885540 157886891 1351 True 1733.000000 1733 90.2060 1648 2970 1 chr6B.!!$R1 1322
6 TraesCS1B01G349500 chr6B 687970772 687972123 1351 True 1672.000000 1672 89.3880 1648 2970 1 chr6B.!!$R2 1322
7 TraesCS1B01G349500 chr6B 687994887 687996238 1351 True 1666.000000 1666 89.3150 1648 2970 1 chr6B.!!$R3 1322
8 TraesCS1B01G349500 chr2B 560723497 560724849 1352 False 1685.000000 1685 89.5510 1648 2970 1 chr2B.!!$F2 1322
9 TraesCS1B01G349500 chr2B 387151476 387152029 553 False 939.000000 939 97.2920 1 553 1 chr2B.!!$F1 552
10 TraesCS1B01G349500 chr4B 519386266 519386816 550 True 946.000000 946 97.6450 1 552 1 chr4B.!!$R1 551
11 TraesCS1B01G349500 chr2A 542559702 542560249 547 False 941.000000 941 97.6280 1 548 1 chr2A.!!$F1 547
12 TraesCS1B01G349500 chr7B 477781350 477781908 558 True 935.000000 935 96.9590 1 556 1 chr7B.!!$R2 555
13 TraesCS1B01G349500 chr7B 18101160 18101709 549 True 928.000000 928 97.0910 1 550 1 chr7B.!!$R1 549
14 TraesCS1B01G349500 chr3A 499681857 499682404 547 False 935.000000 935 97.4450 1 548 1 chr3A.!!$F2 547
15 TraesCS1B01G349500 chr4A 657989117 657989668 551 True 931.000000 931 97.1070 1 553 1 chr4A.!!$R1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 282 0.822532 AGAGGAGACGAACGTGTGGT 60.823 55.000 4.19 0.00 0.00 4.16 F
414 417 0.891373 CGACCTCTCTCACACACCAT 59.109 55.000 0.00 0.00 0.00 3.55 F
1347 1444 0.031585 TGTGTGTGCCGTACTCTGAC 59.968 55.000 0.00 0.00 0.00 3.51 F
1350 1447 0.246635 GTGTGCCGTACTCTGACCAT 59.753 55.000 0.00 0.00 0.00 3.55 F
1733 1871 0.458543 TGCTCTTGCGACGATTCCTC 60.459 55.000 0.00 0.00 43.34 3.71 F
2018 2168 1.062294 TCGTTTGGAACCAAAACGACG 59.938 47.619 24.55 21.24 45.86 5.12 F
3802 4046 1.207089 TCGGAGCATCGTTCCTTTGAT 59.793 47.619 0.00 0.00 34.37 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1328 1425 0.031585 GTCAGAGTACGGCACACACA 59.968 55.0 0.00 0.00 0.00 3.72 R
1551 1674 0.107456 AGCAGACAACCAGACCACAG 59.893 55.0 0.00 0.00 0.00 3.66 R
3020 3240 0.028374 AACCGTCAAAAAGAACGGCG 59.972 50.0 13.39 4.80 41.53 6.46 R
3090 3310 2.276732 TTCTTCAACAGCCCCAGAAG 57.723 50.0 0.00 0.00 38.98 2.85 R
3091 3311 2.746279 TTTCTTCAACAGCCCCAGAA 57.254 45.0 0.00 0.00 0.00 3.02 R
3845 4090 2.103263 GGATCAAGGTAAGGCGATCTGT 59.897 50.0 0.00 0.00 35.62 3.41 R
5375 6480 1.072266 TGGGCTACCTCCAATTGTGT 58.928 50.0 4.43 1.46 37.76 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 1.883926 TCTGCTTACGTGCACACTAGA 59.116 47.619 18.64 8.22 38.12 2.43
270 273 1.304217 GGTGTGGGAGAGGAGACGA 60.304 63.158 0.00 0.00 0.00 4.20
279 282 0.822532 AGAGGAGACGAACGTGTGGT 60.823 55.000 4.19 0.00 0.00 4.16
414 417 0.891373 CGACCTCTCTCACACACCAT 59.109 55.000 0.00 0.00 0.00 3.55
429 432 2.364324 ACACCATACACACGAGTTGTCT 59.636 45.455 0.00 0.00 35.67 3.41
460 463 6.258160 GCATACAAAATCAGCTAATTCGTGT 58.742 36.000 4.70 4.70 0.00 4.49
494 497 3.056821 CAGAAGTTACTGGACGGTGATGA 60.057 47.826 0.00 0.00 34.64 2.92
553 556 4.142643 TGGGCGTTAACATTTCCGATAAAC 60.143 41.667 6.39 0.00 0.00 2.01
555 558 5.449451 GGGCGTTAACATTTCCGATAAACAT 60.449 40.000 6.39 0.00 0.00 2.71
556 559 6.238429 GGGCGTTAACATTTCCGATAAACATA 60.238 38.462 6.39 0.00 0.00 2.29
567 570 2.218759 CGATAAACATAGACCTGCGTGC 59.781 50.000 0.00 0.00 0.00 5.34
623 628 1.518572 CCGTCGCTGCCGTAAGAAT 60.519 57.895 0.00 0.00 43.02 2.40
632 637 2.535984 CTGCCGTAAGAATAGTCGCAAG 59.464 50.000 0.00 0.00 43.02 4.01
639 644 6.183360 CCGTAAGAATAGTCGCAAGTCATTTT 60.183 38.462 0.00 0.00 43.02 1.82
640 645 7.234384 CGTAAGAATAGTCGCAAGTCATTTTT 58.766 34.615 0.00 0.00 43.02 1.94
670 675 3.407588 CGCAAGTCATTTCGCAAAAAG 57.592 42.857 0.00 0.00 0.00 2.27
672 677 3.670055 CGCAAGTCATTTCGCAAAAAGAT 59.330 39.130 0.00 0.00 0.00 2.40
706 714 1.329906 CGATCTCGTTACCGTAGTGCT 59.670 52.381 0.00 0.00 35.01 4.40
837 851 1.653094 CGCCGAGCCAATAAAAGCCA 61.653 55.000 0.00 0.00 0.00 4.75
865 881 0.967887 CACGGCAGGAGAGGAAGAGA 60.968 60.000 0.00 0.00 0.00 3.10
888 904 2.365635 AGAGACCATCCCACCCCG 60.366 66.667 0.00 0.00 0.00 5.73
939 955 2.515757 GCCCAGGAAGCAGCTAGC 60.516 66.667 6.62 6.62 46.19 3.42
1156 1194 2.696076 CGATTCGTTCGTTAGCTTGG 57.304 50.000 0.00 0.00 43.01 3.61
1157 1195 1.990563 CGATTCGTTCGTTAGCTTGGT 59.009 47.619 0.00 0.00 43.01 3.67
1159 1197 2.228138 TTCGTTCGTTAGCTTGGTGT 57.772 45.000 0.00 0.00 0.00 4.16
1160 1198 1.493772 TCGTTCGTTAGCTTGGTGTG 58.506 50.000 0.00 0.00 0.00 3.82
1204 1286 4.124351 CGAGACGGCCCGCTTGTA 62.124 66.667 1.23 0.00 0.00 2.41
1214 1296 2.351060 GGCCCGCTTGTACTTGTTTTAC 60.351 50.000 0.00 0.00 0.00 2.01
1216 1298 3.004002 GCCCGCTTGTACTTGTTTTACTT 59.996 43.478 0.00 0.00 0.00 2.24
1323 1420 1.474077 GATCGATGCTTTGGCCACTTT 59.526 47.619 3.88 0.00 37.74 2.66
1324 1421 2.192664 TCGATGCTTTGGCCACTTTA 57.807 45.000 3.88 0.00 37.74 1.85
1325 1422 2.083774 TCGATGCTTTGGCCACTTTAG 58.916 47.619 3.88 1.44 37.74 1.85
1326 1423 1.133025 CGATGCTTTGGCCACTTTAGG 59.867 52.381 3.88 0.00 37.74 2.69
1327 1424 2.171003 GATGCTTTGGCCACTTTAGGT 58.829 47.619 3.88 0.00 37.74 3.08
1328 1425 2.080654 TGCTTTGGCCACTTTAGGTT 57.919 45.000 3.88 0.00 37.74 3.50
1329 1426 1.686052 TGCTTTGGCCACTTTAGGTTG 59.314 47.619 3.88 0.00 37.74 3.77
1330 1427 1.686587 GCTTTGGCCACTTTAGGTTGT 59.313 47.619 3.88 0.00 0.00 3.32
1331 1428 2.545742 GCTTTGGCCACTTTAGGTTGTG 60.546 50.000 3.88 0.00 0.00 3.33
1332 1429 2.445682 TTGGCCACTTTAGGTTGTGT 57.554 45.000 3.88 0.00 32.76 3.72
1333 1430 1.686355 TGGCCACTTTAGGTTGTGTG 58.314 50.000 0.00 0.00 32.76 3.82
1334 1431 1.064314 TGGCCACTTTAGGTTGTGTGT 60.064 47.619 0.00 0.00 32.76 3.72
1335 1432 1.336755 GGCCACTTTAGGTTGTGTGTG 59.663 52.381 0.00 0.00 32.76 3.82
1336 1433 1.269051 GCCACTTTAGGTTGTGTGTGC 60.269 52.381 0.00 0.00 32.76 4.57
1337 1434 1.336755 CCACTTTAGGTTGTGTGTGCC 59.663 52.381 0.00 0.00 32.76 5.01
1338 1435 1.002900 CACTTTAGGTTGTGTGTGCCG 60.003 52.381 0.00 0.00 0.00 5.69
1339 1436 1.305201 CTTTAGGTTGTGTGTGCCGT 58.695 50.000 0.00 0.00 0.00 5.68
1340 1437 2.158928 ACTTTAGGTTGTGTGTGCCGTA 60.159 45.455 0.00 0.00 0.00 4.02
1341 1438 1.868469 TTAGGTTGTGTGTGCCGTAC 58.132 50.000 0.00 0.00 0.00 3.67
1342 1439 1.042229 TAGGTTGTGTGTGCCGTACT 58.958 50.000 0.00 0.00 0.00 2.73
1343 1440 0.249741 AGGTTGTGTGTGCCGTACTC 60.250 55.000 0.00 0.00 0.00 2.59
1344 1441 0.249741 GGTTGTGTGTGCCGTACTCT 60.250 55.000 0.00 0.00 0.00 3.24
1345 1442 0.859232 GTTGTGTGTGCCGTACTCTG 59.141 55.000 0.00 0.00 0.00 3.35
1346 1443 0.747852 TTGTGTGTGCCGTACTCTGA 59.252 50.000 0.00 0.00 0.00 3.27
1347 1444 0.031585 TGTGTGTGCCGTACTCTGAC 59.968 55.000 0.00 0.00 0.00 3.51
1348 1445 0.666577 GTGTGTGCCGTACTCTGACC 60.667 60.000 0.00 0.00 0.00 4.02
1349 1446 1.110518 TGTGTGCCGTACTCTGACCA 61.111 55.000 0.00 0.00 0.00 4.02
1350 1447 0.246635 GTGTGCCGTACTCTGACCAT 59.753 55.000 0.00 0.00 0.00 3.55
1351 1448 0.973632 TGTGCCGTACTCTGACCATT 59.026 50.000 0.00 0.00 0.00 3.16
1352 1449 1.346395 TGTGCCGTACTCTGACCATTT 59.654 47.619 0.00 0.00 0.00 2.32
1353 1450 2.224426 TGTGCCGTACTCTGACCATTTT 60.224 45.455 0.00 0.00 0.00 1.82
1354 1451 2.812011 GTGCCGTACTCTGACCATTTTT 59.188 45.455 0.00 0.00 0.00 1.94
1374 1471 4.344237 CCTGGATGGAGGGTTTGC 57.656 61.111 0.00 0.00 38.35 3.68
1393 1490 6.403746 GGTTTGCTAGCTTGAGTTTATCCTTC 60.404 42.308 17.23 0.00 0.00 3.46
1443 1542 2.125961 GTATCCTCCACGAGCCGGT 61.126 63.158 1.90 0.00 0.00 5.28
1516 1636 7.784633 CCATTGTTTTGGTTGTTTCAGTTAT 57.215 32.000 0.00 0.00 31.74 1.89
1517 1637 7.629130 CCATTGTTTTGGTTGTTTCAGTTATG 58.371 34.615 0.00 0.00 31.74 1.90
1518 1638 7.493971 CCATTGTTTTGGTTGTTTCAGTTATGA 59.506 33.333 0.00 0.00 31.74 2.15
1519 1639 9.044150 CATTGTTTTGGTTGTTTCAGTTATGAT 57.956 29.630 0.00 0.00 34.73 2.45
1541 1664 8.918202 TGATTTACTTTGTTCACCTGTAGAAT 57.082 30.769 0.00 0.00 0.00 2.40
1547 1670 6.377146 ACTTTGTTCACCTGTAGAATTGTGTT 59.623 34.615 0.00 0.00 0.00 3.32
1549 1672 6.130298 TGTTCACCTGTAGAATTGTGTTTG 57.870 37.500 0.00 0.00 0.00 2.93
1551 1674 6.183360 TGTTCACCTGTAGAATTGTGTTTGTC 60.183 38.462 0.00 0.00 0.00 3.18
1553 1676 5.527214 TCACCTGTAGAATTGTGTTTGTCTG 59.473 40.000 0.00 0.00 0.00 3.51
1557 1680 5.189928 TGTAGAATTGTGTTTGTCTGTGGT 58.810 37.500 0.00 0.00 0.00 4.16
1559 1682 4.526970 AGAATTGTGTTTGTCTGTGGTCT 58.473 39.130 0.00 0.00 0.00 3.85
1598 1721 2.747989 GGAAGCACCACCTTAGTTTAGC 59.252 50.000 0.00 0.00 38.79 3.09
1599 1722 2.094762 AGCACCACCTTAGTTTAGCG 57.905 50.000 0.00 0.00 0.00 4.26
1607 1740 4.992951 CCACCTTAGTTTAGCGTACTGTTT 59.007 41.667 0.00 0.00 0.00 2.83
1609 1742 5.693104 CACCTTAGTTTAGCGTACTGTTTCA 59.307 40.000 0.00 0.00 0.00 2.69
1620 1753 5.877012 AGCGTACTGTTTCATTCAGATTCAT 59.123 36.000 0.00 0.00 36.81 2.57
1621 1754 6.372659 AGCGTACTGTTTCATTCAGATTCATT 59.627 34.615 0.00 0.00 36.81 2.57
1622 1755 6.467047 GCGTACTGTTTCATTCAGATTCATTG 59.533 38.462 0.00 0.00 36.81 2.82
1623 1756 7.521529 CGTACTGTTTCATTCAGATTCATTGT 58.478 34.615 0.00 0.00 36.81 2.71
1624 1757 7.479603 CGTACTGTTTCATTCAGATTCATTGTG 59.520 37.037 0.00 0.00 36.81 3.33
1625 1758 6.154445 ACTGTTTCATTCAGATTCATTGTGC 58.846 36.000 0.00 0.00 36.81 4.57
1626 1759 5.155643 TGTTTCATTCAGATTCATTGTGCG 58.844 37.500 0.00 0.00 0.00 5.34
1627 1760 4.359971 TTCATTCAGATTCATTGTGCGG 57.640 40.909 0.00 0.00 0.00 5.69
1628 1761 2.684374 TCATTCAGATTCATTGTGCGGG 59.316 45.455 0.00 0.00 0.00 6.13
1629 1762 2.488204 TTCAGATTCATTGTGCGGGA 57.512 45.000 0.00 0.00 0.00 5.14
1630 1763 2.715749 TCAGATTCATTGTGCGGGAT 57.284 45.000 0.00 0.00 0.00 3.85
1631 1764 3.836365 TCAGATTCATTGTGCGGGATA 57.164 42.857 0.00 0.00 0.00 2.59
1632 1765 4.149511 TCAGATTCATTGTGCGGGATAA 57.850 40.909 0.00 0.00 0.00 1.75
1633 1766 4.717877 TCAGATTCATTGTGCGGGATAAT 58.282 39.130 0.00 0.00 0.00 1.28
1634 1767 5.132502 TCAGATTCATTGTGCGGGATAATT 58.867 37.500 0.00 0.00 0.00 1.40
1635 1768 5.008911 TCAGATTCATTGTGCGGGATAATTG 59.991 40.000 0.00 0.00 0.00 2.32
1636 1769 5.008911 CAGATTCATTGTGCGGGATAATTGA 59.991 40.000 0.00 0.00 0.00 2.57
1637 1770 4.630894 TTCATTGTGCGGGATAATTGAC 57.369 40.909 0.00 0.00 0.00 3.18
1638 1771 2.611751 TCATTGTGCGGGATAATTGACG 59.388 45.455 0.00 0.00 0.00 4.35
1639 1772 2.388310 TTGTGCGGGATAATTGACGA 57.612 45.000 0.00 0.00 0.00 4.20
1640 1773 2.613026 TGTGCGGGATAATTGACGAT 57.387 45.000 0.00 0.00 0.00 3.73
1641 1774 3.737032 TGTGCGGGATAATTGACGATA 57.263 42.857 0.00 0.00 0.00 2.92
1642 1775 4.061357 TGTGCGGGATAATTGACGATAA 57.939 40.909 0.00 0.00 0.00 1.75
1643 1776 3.805422 TGTGCGGGATAATTGACGATAAC 59.195 43.478 0.00 0.00 0.00 1.89
1644 1777 3.185797 GTGCGGGATAATTGACGATAACC 59.814 47.826 0.00 0.00 0.00 2.85
1645 1778 2.740447 GCGGGATAATTGACGATAACCC 59.260 50.000 0.00 0.00 0.00 4.11
1646 1779 3.332034 CGGGATAATTGACGATAACCCC 58.668 50.000 0.00 0.00 33.29 4.95
1679 1812 8.606040 ATGTGGGTATATTAATTTTGCAATGC 57.394 30.769 0.00 0.00 0.00 3.56
1701 1839 4.256920 CTCTCTGTGGGTAAATGTTCCTG 58.743 47.826 0.00 0.00 0.00 3.86
1722 1860 5.220739 CCTGTTTATCTGTGTATGCTCTTGC 60.221 44.000 0.00 0.00 40.20 4.01
1733 1871 0.458543 TGCTCTTGCGACGATTCCTC 60.459 55.000 0.00 0.00 43.34 3.71
1742 1880 2.810650 CGACGATTCCTCTAAACTGGG 58.189 52.381 0.00 0.00 0.00 4.45
1750 1888 4.286297 TCCTCTAAACTGGGACATTGTG 57.714 45.455 0.00 0.00 38.20 3.33
1773 1912 2.109128 TCTGGGGCATGGTTTTGTCTAA 59.891 45.455 0.00 0.00 0.00 2.10
1790 1933 9.444600 TTTTGTCTAATCCAATAGTAGGTGAAC 57.555 33.333 0.00 0.00 0.00 3.18
1832 1977 7.387673 CCCAAGTTGAAATTAAGGTGGAAATTC 59.612 37.037 3.87 0.00 0.00 2.17
1841 1986 6.651755 TTAAGGTGGAAATTCGACGTTATC 57.348 37.500 18.72 0.21 36.11 1.75
1872 2017 4.271291 TGTGTTGCTGCGCGATAATTATTA 59.729 37.500 12.10 0.00 0.00 0.98
1917 2064 3.074412 GCTGCAGCTACTTTCCTAAACA 58.926 45.455 31.33 0.00 38.21 2.83
2004 2154 5.524511 TCCATAATTCTTGTCGTCGTTTG 57.475 39.130 0.00 0.00 0.00 2.93
2009 2159 1.574134 TCTTGTCGTCGTTTGGAACC 58.426 50.000 0.00 0.00 0.00 3.62
2018 2168 1.062294 TCGTTTGGAACCAAAACGACG 59.938 47.619 24.55 21.24 45.86 5.12
2081 2232 7.339466 GGCCCTTTTACAAATCTCTTCTCATAA 59.661 37.037 0.00 0.00 0.00 1.90
2166 2319 4.901868 AGAAGGTTTGCATGCATCATTTT 58.098 34.783 23.37 13.55 0.00 1.82
2167 2320 5.310451 AGAAGGTTTGCATGCATCATTTTT 58.690 33.333 23.37 11.37 0.00 1.94
2246 2438 5.242838 TCTGGGCTTGTATTTGTAAACCAAG 59.757 40.000 11.38 11.38 35.21 3.61
2337 2529 7.833183 AGAAGACCGTAAGTTATTCTCTTCCTA 59.167 37.037 15.79 0.00 32.31 2.94
2365 2557 9.708092 AAAACTTACATTGAACTCTAGGTAGAC 57.292 33.333 0.00 0.00 0.00 2.59
2377 2569 4.378047 TCTAGGTAGACCCTTCAGTCCTA 58.622 47.826 0.00 0.00 42.73 2.94
2378 2570 4.792426 TCTAGGTAGACCCTTCAGTCCTAA 59.208 45.833 0.00 0.00 42.73 2.69
2381 2573 4.095211 GGTAGACCCTTCAGTCCTAAAGT 58.905 47.826 0.00 0.00 37.49 2.66
2483 2678 2.827921 AGATTGACAATCCAAACCTGGC 59.172 45.455 21.89 0.00 43.17 4.85
2549 2748 8.461222 TCTTTTAATATGTGTTTCCTGCTCATG 58.539 33.333 0.00 0.00 0.00 3.07
2592 2791 3.949586 TCCATGATTGTGGATTGGCTA 57.050 42.857 0.00 0.00 43.20 3.93
2614 2813 7.021790 GCTAGCCACATTACAAGTTTACTTTC 58.978 38.462 2.29 0.00 33.11 2.62
2724 2923 7.400915 TGTCATAACCTGTGTTATAGTTAGGGT 59.599 37.037 0.00 0.00 44.06 4.34
2766 2982 8.228464 CAGTTCATATCTATTCGCTAACTCGTA 58.772 37.037 0.00 0.00 0.00 3.43
2767 2983 8.229137 AGTTCATATCTATTCGCTAACTCGTAC 58.771 37.037 0.00 0.00 0.00 3.67
2896 3116 7.547370 ACATATTTATCTCCTTTCTATGCGAGC 59.453 37.037 0.00 0.00 0.00 5.03
2897 3117 2.829741 ATCTCCTTTCTATGCGAGCC 57.170 50.000 0.00 0.00 0.00 4.70
2934 3154 4.771590 ATGTTGCTGACACAATTGGTAG 57.228 40.909 10.83 1.85 42.04 3.18
3020 3240 6.575162 ACTCCATAAATTTGTTGGACAGTC 57.425 37.500 16.55 0.00 34.65 3.51
3091 3311 8.943594 TCCACCCTTTGTTATGTTTTTATACT 57.056 30.769 0.00 0.00 0.00 2.12
3225 3446 7.911651 TGGAAAGATTAATAGCCTATCCAGAG 58.088 38.462 0.00 0.00 31.26 3.35
3242 3463 5.026121 TCCAGAGAAGAGGATGTACATTGT 58.974 41.667 10.30 0.00 0.00 2.71
3262 3483 6.539649 TTGTCAATGCAGTACTGTTACTTC 57.460 37.500 23.44 11.31 36.31 3.01
3284 3505 7.389607 ACTTCCAGTGCATTTTAATTACTACGT 59.610 33.333 0.00 0.00 0.00 3.57
3404 3625 1.763545 CCTAGGTGAGGGGTTAAGAGC 59.236 57.143 0.00 0.00 42.39 4.09
3409 3630 2.552031 GTGAGGGGTTAAGAGCGATTC 58.448 52.381 0.00 0.00 0.00 2.52
3424 3645 6.893958 GAGCGATTCTCTCAACTATTTTCA 57.106 37.500 0.00 0.00 38.78 2.69
3448 3669 1.799994 TCGGTGCGCATGATTATGATG 59.200 47.619 15.91 0.00 36.36 3.07
3452 3673 4.271776 CGGTGCGCATGATTATGATGATAT 59.728 41.667 15.91 0.00 36.36 1.63
3455 3676 6.690098 GGTGCGCATGATTATGATGATATTTC 59.310 38.462 15.91 0.00 36.36 2.17
3456 3677 7.245604 GTGCGCATGATTATGATGATATTTCA 58.754 34.615 15.91 0.00 36.36 2.69
3495 3716 8.984891 TTAAAATACAGCACATCAATCAAAGG 57.015 30.769 0.00 0.00 0.00 3.11
3572 3804 5.697633 GCAAGCCCATTTTATGATATGGTTG 59.302 40.000 6.28 6.22 39.75 3.77
3575 3807 7.765695 AGCCCATTTTATGATATGGTTGTAG 57.234 36.000 6.28 0.00 39.75 2.74
3591 3823 5.190925 TGGTTGTAGGCATGTTAGGTCTAAT 59.809 40.000 0.00 0.00 0.00 1.73
3592 3824 6.384595 TGGTTGTAGGCATGTTAGGTCTAATA 59.615 38.462 0.00 0.00 0.00 0.98
3593 3825 7.092802 TGGTTGTAGGCATGTTAGGTCTAATAA 60.093 37.037 0.00 0.00 0.00 1.40
3602 3834 7.467403 GCATGTTAGGTCTAATAAGGAAGTTGC 60.467 40.741 0.00 0.00 0.00 4.17
3610 3842 6.749118 GTCTAATAAGGAAGTTGCTGCATTTG 59.251 38.462 1.84 2.93 0.00 2.32
3612 3844 5.927281 ATAAGGAAGTTGCTGCATTTGAT 57.073 34.783 1.84 0.00 0.00 2.57
3614 3846 2.895404 AGGAAGTTGCTGCATTTGATGT 59.105 40.909 1.84 0.00 0.00 3.06
3615 3847 3.057033 AGGAAGTTGCTGCATTTGATGTC 60.057 43.478 1.84 0.00 0.00 3.06
3616 3848 3.305539 GGAAGTTGCTGCATTTGATGTCA 60.306 43.478 1.84 0.00 0.00 3.58
3617 3849 3.293311 AGTTGCTGCATTTGATGTCAC 57.707 42.857 1.84 0.00 0.00 3.67
3618 3850 2.624364 AGTTGCTGCATTTGATGTCACA 59.376 40.909 1.84 0.00 0.00 3.58
3620 3852 3.945981 TGCTGCATTTGATGTCACATT 57.054 38.095 0.00 0.00 0.00 2.71
3622 3854 5.585820 TGCTGCATTTGATGTCACATTAT 57.414 34.783 0.00 0.00 0.00 1.28
3623 3855 6.696441 TGCTGCATTTGATGTCACATTATA 57.304 33.333 0.00 0.00 0.00 0.98
3759 4003 1.816224 GATGTTTACCATGGTTGCCGT 59.184 47.619 25.38 12.00 32.56 5.68
3780 4024 4.548726 CGTTTTGCACGTTCGTTTAGTAGT 60.549 41.667 0.00 0.00 44.49 2.73
3784 4028 4.090729 TGCACGTTCGTTTAGTAGTATCG 58.909 43.478 0.00 0.00 0.00 2.92
3802 4046 1.207089 TCGGAGCATCGTTCCTTTGAT 59.793 47.619 0.00 0.00 34.37 2.57
3803 4047 2.429250 TCGGAGCATCGTTCCTTTGATA 59.571 45.455 0.00 0.00 34.37 2.15
3805 4050 3.531538 GGAGCATCGTTCCTTTGATACA 58.468 45.455 0.00 0.00 34.37 2.29
3817 4062 5.076182 TCCTTTGATACAGGCAAACAATCA 58.924 37.500 0.00 0.00 32.35 2.57
3845 4090 1.698506 ACCCATCTTTTTCGCAACCA 58.301 45.000 0.00 0.00 0.00 3.67
3991 4679 3.441011 ATCCCCGTGCGGATTCGTC 62.441 63.158 12.71 0.00 39.80 4.20
3992 4680 4.143333 CCCCGTGCGGATTCGTCT 62.143 66.667 12.71 0.00 38.89 4.18
4001 4689 1.424493 CGGATTCGTCTGAAGGCTGC 61.424 60.000 0.00 0.00 37.57 5.25
4059 4755 2.731968 CGTTGGCATGATGGTGCTTTAC 60.732 50.000 0.00 0.00 44.45 2.01
4075 4771 3.821841 CTTTACCTGTTGAATCGGCAAC 58.178 45.455 0.00 0.00 46.33 4.17
4079 4775 3.482436 ACCTGTTGAATCGGCAACTTAA 58.518 40.909 14.51 0.00 46.31 1.85
4080 4776 4.079253 ACCTGTTGAATCGGCAACTTAAT 58.921 39.130 14.51 0.73 46.31 1.40
4103 4801 4.222810 TGAGCTTCTGTTGTGCTATAGGAA 59.777 41.667 1.04 0.00 37.16 3.36
4108 4806 6.261826 GCTTCTGTTGTGCTATAGGAATCAAT 59.738 38.462 1.04 0.00 0.00 2.57
4142 4842 6.042638 TCCTTCTGATTTCTCTGTACCTTG 57.957 41.667 0.00 0.00 0.00 3.61
4143 4843 5.544176 TCCTTCTGATTTCTCTGTACCTTGT 59.456 40.000 0.00 0.00 0.00 3.16
4145 4845 5.407407 TCTGATTTCTCTGTACCTTGTCC 57.593 43.478 0.00 0.00 0.00 4.02
4146 4846 4.223032 TCTGATTTCTCTGTACCTTGTCCC 59.777 45.833 0.00 0.00 0.00 4.46
4148 4848 4.223032 TGATTTCTCTGTACCTTGTCCCTC 59.777 45.833 0.00 0.00 0.00 4.30
4150 4850 3.544698 TCTCTGTACCTTGTCCCTCTT 57.455 47.619 0.00 0.00 0.00 2.85
4151 4851 4.669866 TCTCTGTACCTTGTCCCTCTTA 57.330 45.455 0.00 0.00 0.00 2.10
4152 4852 5.208294 TCTCTGTACCTTGTCCCTCTTAT 57.792 43.478 0.00 0.00 0.00 1.73
4153 4853 5.590818 TCTCTGTACCTTGTCCCTCTTATT 58.409 41.667 0.00 0.00 0.00 1.40
4154 4854 6.023603 TCTCTGTACCTTGTCCCTCTTATTT 58.976 40.000 0.00 0.00 0.00 1.40
4184 4884 8.353423 ACATAATCAGAACACCTGCTATTTTT 57.647 30.769 0.00 0.00 42.62 1.94
4272 4978 4.450976 GCCCCTTTTCAAAGTTCAAACAT 58.549 39.130 0.00 0.00 34.20 2.71
4289 5014 7.589958 TCAAACATTAAAAACTAGAAGGGCA 57.410 32.000 0.00 0.00 0.00 5.36
4290 5015 8.012957 TCAAACATTAAAAACTAGAAGGGCAA 57.987 30.769 0.00 0.00 0.00 4.52
4291 5016 8.478877 TCAAACATTAAAAACTAGAAGGGCAAA 58.521 29.630 0.00 0.00 0.00 3.68
4390 5244 4.098654 ACGGAGTCATTGATGGAAGAGTAG 59.901 45.833 0.00 0.00 29.74 2.57
4393 5247 6.628175 CGGAGTCATTGATGGAAGAGTAGAAA 60.628 42.308 0.00 0.00 0.00 2.52
4395 5249 7.772757 GGAGTCATTGATGGAAGAGTAGAAATT 59.227 37.037 0.00 0.00 0.00 1.82
4396 5250 8.729805 AGTCATTGATGGAAGAGTAGAAATTC 57.270 34.615 0.00 0.00 0.00 2.17
4397 5251 8.324306 AGTCATTGATGGAAGAGTAGAAATTCA 58.676 33.333 0.00 0.00 0.00 2.57
4398 5252 9.118300 GTCATTGATGGAAGAGTAGAAATTCAT 57.882 33.333 0.00 0.00 0.00 2.57
4399 5253 9.690913 TCATTGATGGAAGAGTAGAAATTCATT 57.309 29.630 0.00 0.00 0.00 2.57
4423 5277 7.813852 TTAGAAGAGTAAAATTCGTCTCTGC 57.186 36.000 6.90 5.68 37.35 4.26
4424 5278 6.031751 AGAAGAGTAAAATTCGTCTCTGCT 57.968 37.500 7.84 7.84 37.90 4.24
4428 5282 5.346281 AGAGTAAAATTCGTCTCTGCTTTCG 59.654 40.000 5.75 0.00 36.17 3.46
4437 5291 4.082949 TCGTCTCTGCTTTCGTCAGATTAA 60.083 41.667 0.00 0.00 39.56 1.40
4483 5368 0.675633 AAAGGTGAACAGTGGCATGC 59.324 50.000 9.90 9.90 0.00 4.06
4485 5370 2.126734 GTGAACAGTGGCATGCGC 60.127 61.111 12.44 0.00 37.44 6.09
4486 5371 2.594013 TGAACAGTGGCATGCGCA 60.594 55.556 14.96 14.96 41.24 6.09
4487 5372 2.192187 TGAACAGTGGCATGCGCAA 61.192 52.632 17.11 0.00 41.24 4.85
4488 5373 1.007502 GAACAGTGGCATGCGCAAA 60.008 52.632 17.11 0.00 41.24 3.68
4489 5374 0.597118 GAACAGTGGCATGCGCAAAA 60.597 50.000 17.11 0.00 41.24 2.44
4490 5375 0.033781 AACAGTGGCATGCGCAAAAT 59.966 45.000 17.11 0.00 41.24 1.82
4576 5464 2.029623 ACAGTACACACGAGGTTCACT 58.970 47.619 0.00 0.00 0.00 3.41
4701 5605 5.588246 TCAAAATAAAGTGCTCACTGACACA 59.412 36.000 2.97 0.00 41.58 3.72
4883 5789 9.955208 TTATCTTGTTCTATATGCATTGCAAAG 57.045 29.630 16.46 13.11 43.62 2.77
4891 5798 1.850377 TGCATTGCAAAGAAACACCG 58.150 45.000 9.33 0.00 34.76 4.94
4899 5806 0.537371 AAAGAAACACCGCCCTCCAG 60.537 55.000 0.00 0.00 0.00 3.86
4947 5857 3.262420 CCAGAGTGGGATTTAGACAACG 58.738 50.000 0.00 0.00 32.67 4.10
4984 5894 0.037232 ACTCCCGCTGAAGTTAGTGC 60.037 55.000 0.00 0.00 0.00 4.40
5124 6218 3.459828 TGAGGATCCAGGATGTTTACCA 58.540 45.455 15.82 0.00 0.00 3.25
5192 6294 2.354259 CTGGATGGAGAGTTGCTTGAC 58.646 52.381 0.00 0.00 0.00 3.18
5269 6371 8.359642 AGCAAGCTCTTTGTTTATGTTGAATTA 58.640 29.630 0.00 0.00 39.08 1.40
5306 6411 6.712547 AGTTGGACTTCTTTGACTTTCCATAG 59.287 38.462 0.00 0.00 33.20 2.23
5350 6455 1.007387 GTTTCTGTGCGGGGCTTTG 60.007 57.895 0.00 0.00 0.00 2.77
5365 6470 0.248990 CTTTGCACGCCTGAAAAGCA 60.249 50.000 3.56 0.00 0.00 3.91
5388 6493 2.297033 GCAATGTGACACAATTGGAGGT 59.703 45.455 13.23 4.89 0.00 3.85
5423 6528 2.724708 CGTGTCTCTGCAGAAGCGC 61.725 63.158 18.85 17.33 46.23 5.92
5556 6663 3.531538 ACCAATGTTGTATGGCTACTCG 58.468 45.455 0.00 0.00 40.51 4.18
5836 7028 2.832643 TAGTCGGGGAATGTCACCTA 57.167 50.000 0.00 0.00 37.97 3.08
5872 7066 2.071636 GAACTTCCCCCGTTCCCCAA 62.072 60.000 0.00 0.00 35.81 4.12
5993 7187 7.354751 ACCACAAAAGTTGCTATTTTCCTAA 57.645 32.000 0.00 0.00 0.00 2.69
6073 7360 9.659135 ATCCCATCCTCACAATAATAAAAATGA 57.341 29.630 0.00 0.00 0.00 2.57
6075 7362 8.143835 CCCATCCTCACAATAATAAAAATGACC 58.856 37.037 0.00 0.00 0.00 4.02
6076 7363 8.694540 CCATCCTCACAATAATAAAAATGACCA 58.305 33.333 0.00 0.00 0.00 4.02
6079 7366 9.699410 TCCTCACAATAATAAAAATGACCATCT 57.301 29.630 0.00 0.00 0.00 2.90
6143 7430 9.892130 AACTGACCTCCTCTAGTAATTAAAATG 57.108 33.333 0.00 0.00 0.00 2.32
6144 7431 7.988028 ACTGACCTCCTCTAGTAATTAAAATGC 59.012 37.037 0.00 0.00 0.00 3.56
6145 7432 7.280356 TGACCTCCTCTAGTAATTAAAATGCC 58.720 38.462 0.00 0.00 0.00 4.40
6146 7433 7.092623 TGACCTCCTCTAGTAATTAAAATGCCA 60.093 37.037 0.00 0.00 0.00 4.92
6147 7434 7.816411 ACCTCCTCTAGTAATTAAAATGCCAT 58.184 34.615 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 3.692593 TCTAGTGTGCACGTAAGCAGATA 59.307 43.478 13.13 0.00 46.69 1.98
123 124 1.070786 CAGGGTACACGGCAACTGT 59.929 57.895 0.00 0.00 33.48 3.55
270 273 1.374252 GCCATCTCGACCACACGTT 60.374 57.895 0.00 0.00 34.70 3.99
414 417 3.620761 CACGTAAGACAACTCGTGTGTA 58.379 45.455 8.11 0.00 45.26 2.90
429 432 4.006989 AGCTGATTTTGTATGCCACGTAA 58.993 39.130 0.00 0.00 0.00 3.18
460 463 4.686091 CAGTAACTTCTGCACGAATCTTGA 59.314 41.667 0.00 0.00 0.00 3.02
494 497 0.179056 CCAACTCACCCACACGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
553 556 2.802667 GCACGCACGCAGGTCTATG 61.803 63.158 0.00 0.00 0.00 2.23
555 558 4.735132 GGCACGCACGCAGGTCTA 62.735 66.667 0.00 0.00 0.00 2.59
567 570 2.322081 CCGGTTGGTACTTGGCACG 61.322 63.158 0.00 0.00 0.00 5.34
606 611 1.121240 CTATTCTTACGGCAGCGACG 58.879 55.000 2.24 2.24 41.40 5.12
612 617 2.094390 ACTTGCGACTATTCTTACGGCA 60.094 45.455 0.00 0.00 0.00 5.69
615 620 5.950965 AATGACTTGCGACTATTCTTACG 57.049 39.130 0.00 0.00 0.00 3.18
639 644 4.314740 AATGACTTGCGTTGCCTAAAAA 57.685 36.364 0.00 0.00 0.00 1.94
640 645 4.295051 GAAATGACTTGCGTTGCCTAAAA 58.705 39.130 0.00 0.00 0.00 1.52
641 646 3.608241 CGAAATGACTTGCGTTGCCTAAA 60.608 43.478 0.00 0.00 0.00 1.85
642 647 2.095969 CGAAATGACTTGCGTTGCCTAA 60.096 45.455 0.00 0.00 0.00 2.69
643 648 1.463056 CGAAATGACTTGCGTTGCCTA 59.537 47.619 0.00 0.00 0.00 3.93
644 649 0.238289 CGAAATGACTTGCGTTGCCT 59.762 50.000 0.00 0.00 0.00 4.75
645 650 1.337110 GCGAAATGACTTGCGTTGCC 61.337 55.000 0.00 0.00 0.00 4.52
646 651 0.660005 TGCGAAATGACTTGCGTTGC 60.660 50.000 0.00 0.00 0.00 4.17
647 652 1.752753 TTGCGAAATGACTTGCGTTG 58.247 45.000 0.00 0.00 0.00 4.10
648 653 2.483583 TTTGCGAAATGACTTGCGTT 57.516 40.000 0.00 0.00 0.00 4.84
649 654 2.483583 TTTTGCGAAATGACTTGCGT 57.516 40.000 0.00 0.00 0.00 5.24
650 655 3.042189 TCTTTTTGCGAAATGACTTGCG 58.958 40.909 10.23 0.00 0.00 4.85
651 656 6.689178 TTATCTTTTTGCGAAATGACTTGC 57.311 33.333 15.26 0.00 33.41 4.01
652 657 9.571804 CTTTTTATCTTTTTGCGAAATGACTTG 57.428 29.630 15.26 2.73 33.41 3.16
653 658 9.528018 TCTTTTTATCTTTTTGCGAAATGACTT 57.472 25.926 15.26 5.66 33.41 3.01
654 659 9.528018 TTCTTTTTATCTTTTTGCGAAATGACT 57.472 25.926 15.26 8.85 33.41 3.41
661 666 8.528295 CGACTTTTTCTTTTTATCTTTTTGCGA 58.472 29.630 0.00 0.00 0.00 5.10
662 667 8.528295 TCGACTTTTTCTTTTTATCTTTTTGCG 58.472 29.630 0.00 0.00 0.00 4.85
672 677 8.490355 GGTAACGAGATCGACTTTTTCTTTTTA 58.510 33.333 9.58 0.00 43.02 1.52
706 714 2.256158 CCGTGCGAGTTACCGTGA 59.744 61.111 0.00 0.00 0.00 4.35
783 797 2.360475 GAAGCCAGCCAGTGTCCC 60.360 66.667 0.00 0.00 0.00 4.46
860 874 3.117512 GGGATGGTCTCTCTCTCTCTCTT 60.118 52.174 0.00 0.00 0.00 2.85
865 881 1.063266 GGTGGGATGGTCTCTCTCTCT 60.063 57.143 0.00 0.00 0.00 3.10
948 964 0.248866 GACTCCTCGAAGCTGCTAGC 60.249 60.000 8.10 8.10 42.84 3.42
949 965 0.383949 GGACTCCTCGAAGCTGCTAG 59.616 60.000 0.90 0.00 0.00 3.42
950 966 1.377366 CGGACTCCTCGAAGCTGCTA 61.377 60.000 0.90 0.00 0.00 3.49
1139 1177 2.478894 CACACCAAGCTAACGAACGAAT 59.521 45.455 0.14 0.00 0.00 3.34
1142 1180 0.511221 CCACACCAAGCTAACGAACG 59.489 55.000 0.00 0.00 0.00 3.95
1148 1186 2.033448 CCGGCCACACCAAGCTAA 59.967 61.111 2.24 0.00 39.03 3.09
1187 1243 4.124351 TACAAGCGGGCCGTCTCG 62.124 66.667 28.82 16.62 0.00 4.04
1188 1244 2.502692 AAGTACAAGCGGGCCGTCTC 62.503 60.000 28.82 11.20 0.00 3.36
1189 1245 2.580601 AAGTACAAGCGGGCCGTCT 61.581 57.895 28.82 21.49 0.00 4.18
1190 1246 2.047560 AAGTACAAGCGGGCCGTC 60.048 61.111 28.82 19.48 0.00 4.79
1191 1247 2.358247 CAAGTACAAGCGGGCCGT 60.358 61.111 28.82 11.69 0.00 5.68
1195 1277 4.823790 AAGTAAAACAAGTACAAGCGGG 57.176 40.909 0.00 0.00 0.00 6.13
1323 1420 1.000060 GAGTACGGCACACACAACCTA 60.000 52.381 0.00 0.00 0.00 3.08
1324 1421 0.249741 GAGTACGGCACACACAACCT 60.250 55.000 0.00 0.00 0.00 3.50
1325 1422 0.249741 AGAGTACGGCACACACAACC 60.250 55.000 0.00 0.00 0.00 3.77
1326 1423 0.859232 CAGAGTACGGCACACACAAC 59.141 55.000 0.00 0.00 0.00 3.32
1327 1424 0.747852 TCAGAGTACGGCACACACAA 59.252 50.000 0.00 0.00 0.00 3.33
1328 1425 0.031585 GTCAGAGTACGGCACACACA 59.968 55.000 0.00 0.00 0.00 3.72
1329 1426 0.666577 GGTCAGAGTACGGCACACAC 60.667 60.000 0.00 0.00 0.00 3.82
1330 1427 1.110518 TGGTCAGAGTACGGCACACA 61.111 55.000 0.00 0.00 0.00 3.72
1331 1428 0.246635 ATGGTCAGAGTACGGCACAC 59.753 55.000 0.00 0.00 0.00 3.82
1332 1429 0.973632 AATGGTCAGAGTACGGCACA 59.026 50.000 0.00 0.00 0.00 4.57
1333 1430 2.094762 AAATGGTCAGAGTACGGCAC 57.905 50.000 0.00 0.00 0.00 5.01
1334 1431 2.851263 AAAATGGTCAGAGTACGGCA 57.149 45.000 0.00 0.00 0.00 5.69
1357 1454 0.918983 TAGCAAACCCTCCATCCAGG 59.081 55.000 0.00 0.00 39.47 4.45
1358 1455 1.748591 GCTAGCAAACCCTCCATCCAG 60.749 57.143 10.63 0.00 0.00 3.86
1359 1456 0.255890 GCTAGCAAACCCTCCATCCA 59.744 55.000 10.63 0.00 0.00 3.41
1360 1457 0.548510 AGCTAGCAAACCCTCCATCC 59.451 55.000 18.83 0.00 0.00 3.51
1361 1458 2.019984 CAAGCTAGCAAACCCTCCATC 58.980 52.381 18.83 0.00 0.00 3.51
1362 1459 1.635487 TCAAGCTAGCAAACCCTCCAT 59.365 47.619 18.83 0.00 0.00 3.41
1363 1460 1.003580 CTCAAGCTAGCAAACCCTCCA 59.996 52.381 18.83 0.00 0.00 3.86
1364 1461 1.003696 ACTCAAGCTAGCAAACCCTCC 59.996 52.381 18.83 0.00 0.00 4.30
1365 1462 2.481289 ACTCAAGCTAGCAAACCCTC 57.519 50.000 18.83 0.00 0.00 4.30
1366 1463 2.959465 AACTCAAGCTAGCAAACCCT 57.041 45.000 18.83 0.00 0.00 4.34
1372 1469 4.433615 CGAAGGATAAACTCAAGCTAGCA 58.566 43.478 18.83 0.00 0.00 3.49
1409 1508 5.417580 GGAGGATACACAAGCAAATTAACCA 59.582 40.000 0.00 0.00 41.41 3.67
1412 1511 5.123186 CGTGGAGGATACACAAGCAAATTAA 59.877 40.000 0.00 0.00 38.74 1.40
1413 1512 4.634004 CGTGGAGGATACACAAGCAAATTA 59.366 41.667 0.00 0.00 38.74 1.40
1414 1513 3.440173 CGTGGAGGATACACAAGCAAATT 59.560 43.478 0.00 0.00 38.74 1.82
1415 1514 3.009723 CGTGGAGGATACACAAGCAAAT 58.990 45.455 0.00 0.00 38.74 2.32
1443 1542 6.785337 TGCAGTAGCTAGTAATTAGTGGAA 57.215 37.500 7.79 0.00 42.74 3.53
1509 1629 8.783093 CAGGTGAACAAAGTAAATCATAACTGA 58.217 33.333 0.00 0.00 35.41 3.41
1510 1630 8.567948 ACAGGTGAACAAAGTAAATCATAACTG 58.432 33.333 0.00 0.00 32.30 3.16
1515 1635 8.918202 TTCTACAGGTGAACAAAGTAAATCAT 57.082 30.769 0.00 0.00 0.00 2.45
1516 1636 8.918202 ATTCTACAGGTGAACAAAGTAAATCA 57.082 30.769 0.00 0.00 0.00 2.57
1517 1637 9.612620 CAATTCTACAGGTGAACAAAGTAAATC 57.387 33.333 0.00 0.00 0.00 2.17
1518 1638 9.131791 ACAATTCTACAGGTGAACAAAGTAAAT 57.868 29.630 0.00 0.00 0.00 1.40
1519 1639 8.402472 CACAATTCTACAGGTGAACAAAGTAAA 58.598 33.333 0.00 0.00 33.16 2.01
1522 1645 5.885912 ACACAATTCTACAGGTGAACAAAGT 59.114 36.000 0.00 0.00 35.33 2.66
1541 1664 2.290641 ACCAGACCACAGACAAACACAA 60.291 45.455 0.00 0.00 0.00 3.33
1547 1670 1.837439 AGACAACCAGACCACAGACAA 59.163 47.619 0.00 0.00 0.00 3.18
1549 1672 1.871080 CAGACAACCAGACCACAGAC 58.129 55.000 0.00 0.00 0.00 3.51
1551 1674 0.107456 AGCAGACAACCAGACCACAG 59.893 55.000 0.00 0.00 0.00 3.66
1553 1676 1.334869 CAAAGCAGACAACCAGACCAC 59.665 52.381 0.00 0.00 0.00 4.16
1557 1680 2.886523 CCAATCAAAGCAGACAACCAGA 59.113 45.455 0.00 0.00 0.00 3.86
1559 1682 2.942804 TCCAATCAAAGCAGACAACCA 58.057 42.857 0.00 0.00 0.00 3.67
1582 1705 3.924686 CAGTACGCTAAACTAAGGTGGTG 59.075 47.826 0.00 0.00 0.00 4.17
1596 1719 5.237815 TGAATCTGAATGAAACAGTACGCT 58.762 37.500 0.00 0.00 36.81 5.07
1598 1721 7.479603 CACAATGAATCTGAATGAAACAGTACG 59.520 37.037 0.00 0.00 36.81 3.67
1599 1722 7.272084 GCACAATGAATCTGAATGAAACAGTAC 59.728 37.037 0.00 0.00 36.81 2.73
1607 1740 2.684374 CCCGCACAATGAATCTGAATGA 59.316 45.455 0.00 0.00 0.00 2.57
1609 1742 3.003394 TCCCGCACAATGAATCTGAAT 57.997 42.857 0.00 0.00 0.00 2.57
1620 1753 2.388310 TCGTCAATTATCCCGCACAA 57.612 45.000 0.00 0.00 0.00 3.33
1621 1754 2.613026 ATCGTCAATTATCCCGCACA 57.387 45.000 0.00 0.00 0.00 4.57
1622 1755 3.185797 GGTTATCGTCAATTATCCCGCAC 59.814 47.826 0.00 0.00 0.00 5.34
1623 1756 3.395639 GGTTATCGTCAATTATCCCGCA 58.604 45.455 0.00 0.00 0.00 5.69
1624 1757 2.740447 GGGTTATCGTCAATTATCCCGC 59.260 50.000 0.00 0.00 0.00 6.13
1625 1758 3.007614 AGGGGTTATCGTCAATTATCCCG 59.992 47.826 0.00 0.00 37.04 5.14
1626 1759 4.635699 AGGGGTTATCGTCAATTATCCC 57.364 45.455 0.00 0.00 0.00 3.85
1627 1760 5.238650 CACAAGGGGTTATCGTCAATTATCC 59.761 44.000 0.00 0.00 0.00 2.59
1628 1761 5.277828 GCACAAGGGGTTATCGTCAATTATC 60.278 44.000 0.00 0.00 0.00 1.75
1629 1762 4.578928 GCACAAGGGGTTATCGTCAATTAT 59.421 41.667 0.00 0.00 0.00 1.28
1630 1763 3.942748 GCACAAGGGGTTATCGTCAATTA 59.057 43.478 0.00 0.00 0.00 1.40
1631 1764 2.752903 GCACAAGGGGTTATCGTCAATT 59.247 45.455 0.00 0.00 0.00 2.32
1632 1765 2.290641 TGCACAAGGGGTTATCGTCAAT 60.291 45.455 0.00 0.00 0.00 2.57
1633 1766 1.072489 TGCACAAGGGGTTATCGTCAA 59.928 47.619 0.00 0.00 0.00 3.18
1634 1767 0.687920 TGCACAAGGGGTTATCGTCA 59.312 50.000 0.00 0.00 0.00 4.35
1635 1768 1.816074 TTGCACAAGGGGTTATCGTC 58.184 50.000 0.00 0.00 0.00 4.20
1636 1769 2.091541 CATTGCACAAGGGGTTATCGT 58.908 47.619 0.00 0.00 0.00 3.73
1637 1770 2.091541 ACATTGCACAAGGGGTTATCG 58.908 47.619 0.00 0.00 0.00 2.92
1638 1771 2.166254 CCACATTGCACAAGGGGTTATC 59.834 50.000 0.00 0.00 0.00 1.75
1639 1772 2.178580 CCACATTGCACAAGGGGTTAT 58.821 47.619 0.00 0.00 0.00 1.89
1640 1773 1.626686 CCACATTGCACAAGGGGTTA 58.373 50.000 0.00 0.00 0.00 2.85
1641 1774 1.120795 CCCACATTGCACAAGGGGTT 61.121 55.000 5.06 0.00 35.83 4.11
1642 1775 1.533753 CCCACATTGCACAAGGGGT 60.534 57.895 5.06 0.00 35.83 4.95
1643 1776 0.251564 TACCCACATTGCACAAGGGG 60.252 55.000 15.01 12.78 43.96 4.79
1644 1777 1.851304 ATACCCACATTGCACAAGGG 58.149 50.000 10.33 10.33 45.20 3.95
1645 1778 6.707440 TTAATATACCCACATTGCACAAGG 57.293 37.500 0.00 0.00 0.00 3.61
1646 1779 9.598517 AAAATTAATATACCCACATTGCACAAG 57.401 29.630 0.00 0.00 0.00 3.16
1679 1812 4.256920 CAGGAACATTTACCCACAGAGAG 58.743 47.826 0.00 0.00 0.00 3.20
1701 1839 4.566759 TCGCAAGAGCATACACAGATAAAC 59.433 41.667 0.00 0.00 45.01 2.01
1722 1860 2.426024 TCCCAGTTTAGAGGAATCGTCG 59.574 50.000 0.00 0.00 0.00 5.12
1733 1871 4.216257 CCAGAACACAATGTCCCAGTTTAG 59.784 45.833 0.00 0.00 0.00 1.85
1742 1880 1.203052 CATGCCCCAGAACACAATGTC 59.797 52.381 0.00 0.00 0.00 3.06
1750 1888 1.000843 GACAAAACCATGCCCCAGAAC 59.999 52.381 0.00 0.00 0.00 3.01
1773 1912 6.957631 TGACAATGTTCACCTACTATTGGAT 58.042 36.000 0.00 0.00 34.07 3.41
1790 1933 2.886862 TGGGCAAAGTGTTGACAATG 57.113 45.000 0.00 0.00 45.53 2.82
1832 1977 3.444916 ACACAATGCTAGGATAACGTCG 58.555 45.455 0.00 0.00 0.00 5.12
1860 2005 9.640963 ACATCTACTTGTCCTAATAATTATCGC 57.359 33.333 0.00 0.00 0.00 4.58
1872 2017 1.831736 CCGGGAACATCTACTTGTCCT 59.168 52.381 0.00 0.00 0.00 3.85
1890 2037 0.593128 AAAGTAGCTGCAGCAAACCG 59.407 50.000 38.24 1.33 45.16 4.44
1917 2064 1.203052 CAGCGGATGGTGCTTCATTTT 59.797 47.619 0.00 0.00 41.72 1.82
1941 2088 9.476202 AAATACTGAAAGGTGAATAAAAAGTGC 57.524 29.630 0.00 0.00 39.30 4.40
1954 2103 6.479006 GGGGTAGTACAAAATACTGAAAGGT 58.521 40.000 2.06 0.00 39.30 3.50
2004 2154 0.317519 CTTGCCGTCGTTTTGGTTCC 60.318 55.000 0.00 0.00 0.00 3.62
2009 2159 3.425404 CATAATCCTTGCCGTCGTTTTG 58.575 45.455 0.00 0.00 0.00 2.44
2018 2168 2.222027 CTCCGTTCCATAATCCTTGCC 58.778 52.381 0.00 0.00 0.00 4.52
2081 2232 7.386848 CCTCTGCATTCAGTTTCAAATGAAAAT 59.613 33.333 9.98 6.59 44.71 1.82
2089 2240 2.555325 CAGCCTCTGCATTCAGTTTCAA 59.445 45.455 0.00 0.00 41.10 2.69
2166 2319 7.519032 AACTGATTTCGTAAATGGGAAGAAA 57.481 32.000 0.00 0.00 35.64 2.52
2167 2320 7.519032 AAACTGATTTCGTAAATGGGAAGAA 57.481 32.000 0.00 0.00 0.00 2.52
2246 2438 4.759782 TGTTAGATACCTCTTGCTTCTGC 58.240 43.478 0.00 0.00 34.74 4.26
2359 2551 4.081586 CACTTTAGGACTGAAGGGTCTACC 60.082 50.000 8.45 0.00 36.55 3.18
2360 2552 4.527427 ACACTTTAGGACTGAAGGGTCTAC 59.473 45.833 5.98 0.00 38.23 2.59
2365 2557 6.540438 TGTATACACTTTAGGACTGAAGGG 57.460 41.667 0.08 4.73 35.90 3.95
2401 2593 5.581126 AAAAACAGAAGCAGATTGTCACA 57.419 34.783 0.00 0.00 0.00 3.58
2445 2638 1.550327 TCTCGATGAGACCTGCAGTT 58.450 50.000 13.81 0.00 33.35 3.16
2483 2678 6.249035 TGGCTTTAATACTCTTTGGTTTCG 57.751 37.500 0.00 0.00 0.00 3.46
2587 2786 3.433306 AACTTGTAATGTGGCTAGCCA 57.567 42.857 32.88 32.88 45.02 4.75
2592 2791 6.068670 AGGAAAGTAAACTTGTAATGTGGCT 58.931 36.000 0.00 0.00 36.12 4.75
2614 2813 5.707298 TGGAACAGCAAATCTTCTTTCTAGG 59.293 40.000 0.00 0.00 0.00 3.02
2664 2863 7.334421 GCATAATAACAGTCTGAAGGAGTCAAA 59.666 37.037 6.91 0.00 35.22 2.69
2896 3116 4.487948 CAACATTTCAAGTGCACCTATGG 58.512 43.478 14.63 0.00 0.00 2.74
2897 3117 3.922240 GCAACATTTCAAGTGCACCTATG 59.078 43.478 14.63 10.83 0.00 2.23
2901 3121 2.129607 CAGCAACATTTCAAGTGCACC 58.870 47.619 14.63 0.00 0.00 5.01
2934 3154 8.893219 AATTTCCTTTTTCATTCCAGAACTTC 57.107 30.769 0.00 0.00 0.00 3.01
2992 3212 8.556213 TGTCCAACAAATTTATGGAGTACTAC 57.444 34.615 19.87 0.00 43.59 2.73
2995 3215 7.448748 ACTGTCCAACAAATTTATGGAGTAC 57.551 36.000 19.87 12.46 43.59 2.73
3006 3226 0.534203 ACGGCGACTGTCCAACAAAT 60.534 50.000 16.62 0.00 0.00 2.32
3020 3240 0.028374 AACCGTCAAAAAGAACGGCG 59.972 50.000 13.39 4.80 41.53 6.46
3090 3310 2.276732 TTCTTCAACAGCCCCAGAAG 57.723 50.000 0.00 0.00 38.98 2.85
3091 3311 2.746279 TTTCTTCAACAGCCCCAGAA 57.254 45.000 0.00 0.00 0.00 3.02
3202 3423 9.651913 CTTCTCTGGATAGGCTATTAATCTTTC 57.348 37.037 8.71 0.00 0.00 2.62
3205 3426 7.619302 CCTCTTCTCTGGATAGGCTATTAATCT 59.381 40.741 8.71 0.00 0.00 2.40
3225 3446 5.355071 TGCATTGACAATGTACATCCTCTTC 59.645 40.000 25.18 8.14 41.01 2.87
3242 3463 5.222079 TGGAAGTAACAGTACTGCATTGA 57.778 39.130 22.90 0.84 39.79 2.57
3262 3483 8.736751 AAAACGTAGTAATTAAAATGCACTGG 57.263 30.769 0.00 0.00 45.00 4.00
3333 3554 6.267492 TCCTCCTGAAGTCTCATATAGTGA 57.733 41.667 0.00 0.00 35.05 3.41
3404 3625 7.463383 CGAAGGTGAAAATAGTTGAGAGAATCG 60.463 40.741 0.00 0.00 42.67 3.34
3472 3693 6.996509 ACCTTTGATTGATGTGCTGTATTTT 58.003 32.000 0.00 0.00 0.00 1.82
3473 3694 6.594788 ACCTTTGATTGATGTGCTGTATTT 57.405 33.333 0.00 0.00 0.00 1.40
3474 3695 6.594788 AACCTTTGATTGATGTGCTGTATT 57.405 33.333 0.00 0.00 0.00 1.89
3476 3697 8.800370 TTATAACCTTTGATTGATGTGCTGTA 57.200 30.769 0.00 0.00 0.00 2.74
3477 3698 7.701539 TTATAACCTTTGATTGATGTGCTGT 57.298 32.000 0.00 0.00 0.00 4.40
3508 3729 6.903534 TGGGAACATAGTAGATCCTTTCTTCT 59.096 38.462 0.00 0.00 34.07 2.85
3509 3730 6.987404 GTGGGAACATAGTAGATCCTTTCTTC 59.013 42.308 0.00 0.00 46.14 2.87
3510 3731 6.674419 AGTGGGAACATAGTAGATCCTTTCTT 59.326 38.462 0.00 0.00 46.14 2.52
3512 3733 6.487299 AGTGGGAACATAGTAGATCCTTTC 57.513 41.667 0.00 0.00 46.14 2.62
3513 3734 6.443849 TCAAGTGGGAACATAGTAGATCCTTT 59.556 38.462 0.00 0.00 46.14 3.11
3515 3736 5.529289 TCAAGTGGGAACATAGTAGATCCT 58.471 41.667 0.00 0.00 46.14 3.24
3517 3738 6.322712 AGACTCAAGTGGGAACATAGTAGATC 59.677 42.308 0.00 0.00 46.14 2.75
3518 3739 6.198639 AGACTCAAGTGGGAACATAGTAGAT 58.801 40.000 0.00 0.00 46.14 1.98
3519 3740 5.580998 AGACTCAAGTGGGAACATAGTAGA 58.419 41.667 0.00 0.00 46.14 2.59
3520 3741 5.923733 AGACTCAAGTGGGAACATAGTAG 57.076 43.478 0.00 0.00 46.14 2.57
3572 3804 7.299246 TCCTTATTAGACCTAACATGCCTAC 57.701 40.000 0.00 0.00 0.00 3.18
3575 3807 6.592870 ACTTCCTTATTAGACCTAACATGCC 58.407 40.000 0.00 0.00 0.00 4.40
3591 3823 4.523943 ACATCAAATGCAGCAACTTCCTTA 59.476 37.500 0.00 0.00 0.00 2.69
3592 3824 3.322828 ACATCAAATGCAGCAACTTCCTT 59.677 39.130 0.00 0.00 0.00 3.36
3593 3825 2.895404 ACATCAAATGCAGCAACTTCCT 59.105 40.909 0.00 0.00 0.00 3.36
3602 3834 9.821662 CATAGTATAATGTGACATCAAATGCAG 57.178 33.333 0.00 0.00 0.00 4.41
3622 3854 9.964354 TTCTTGTACTACTAAGGACACATAGTA 57.036 33.333 0.00 0.00 46.62 1.82
3623 3855 8.874744 TTCTTGTACTACTAAGGACACATAGT 57.125 34.615 0.00 0.00 46.62 2.12
3726 3970 5.722263 TGGTAAACATCCAATGCATGAAAG 58.278 37.500 0.00 0.00 31.50 2.62
3759 4003 6.398830 CGATACTACTAAACGAACGTGCAAAA 60.399 38.462 0.00 0.00 0.00 2.44
3767 4011 4.913376 TGCTCCGATACTACTAAACGAAC 58.087 43.478 0.00 0.00 0.00 3.95
3770 4014 4.149617 CGATGCTCCGATACTACTAAACG 58.850 47.826 0.00 0.00 0.00 3.60
3780 4024 2.429250 TCAAAGGAACGATGCTCCGATA 59.571 45.455 5.39 0.00 38.08 2.92
3784 4028 3.531538 TGTATCAAAGGAACGATGCTCC 58.468 45.455 0.00 0.00 0.00 4.70
3802 4046 6.839124 AAAGATCATGATTGTTTGCCTGTA 57.161 33.333 10.14 0.00 0.00 2.74
3803 4047 5.733620 AAAGATCATGATTGTTTGCCTGT 57.266 34.783 10.14 0.00 0.00 4.00
3805 4050 5.127682 GGGTAAAGATCATGATTGTTTGCCT 59.872 40.000 29.73 14.51 33.91 4.75
3817 4062 5.652014 TGCGAAAAAGATGGGTAAAGATCAT 59.348 36.000 0.00 0.00 0.00 2.45
3845 4090 2.103263 GGATCAAGGTAAGGCGATCTGT 59.897 50.000 0.00 0.00 35.62 3.41
3991 4679 5.180868 GGATATAGTTTGATGCAGCCTTCAG 59.819 44.000 0.00 0.00 0.00 3.02
3992 4680 5.065914 GGATATAGTTTGATGCAGCCTTCA 58.934 41.667 0.00 0.00 0.00 3.02
4001 4689 5.056480 TCGTGCCAAGGATATAGTTTGATG 58.944 41.667 0.00 0.00 0.00 3.07
4059 4755 4.155826 TCATTAAGTTGCCGATTCAACAGG 59.844 41.667 14.37 0.00 46.44 4.00
4066 4762 4.095483 CAGAAGCTCATTAAGTTGCCGATT 59.905 41.667 0.00 0.00 0.00 3.34
4075 4771 6.674694 ATAGCACAACAGAAGCTCATTAAG 57.325 37.500 0.00 0.00 39.68 1.85
4079 4775 4.406972 TCCTATAGCACAACAGAAGCTCAT 59.593 41.667 0.00 0.00 39.68 2.90
4080 4776 3.769300 TCCTATAGCACAACAGAAGCTCA 59.231 43.478 0.00 0.00 39.68 4.26
4120 4818 5.799213 ACAAGGTACAGAGAAATCAGAAGG 58.201 41.667 0.00 0.00 0.00 3.46
4122 4820 5.280011 GGGACAAGGTACAGAGAAATCAGAA 60.280 44.000 0.00 0.00 0.00 3.02
4152 4852 9.461312 AGCAGGTGTTCTGATTATGTATTAAAA 57.539 29.630 0.00 0.00 46.18 1.52
4159 4859 7.944729 AAAATAGCAGGTGTTCTGATTATGT 57.055 32.000 0.00 0.00 46.18 2.29
4301 5155 3.148279 GATCCCCAGCGGAGTCGT 61.148 66.667 0.00 0.00 46.60 4.34
4397 5251 8.874816 GCAGAGACGAATTTTACTCTTCTAAAT 58.125 33.333 0.00 0.00 37.59 1.40
4398 5252 8.088981 AGCAGAGACGAATTTTACTCTTCTAAA 58.911 33.333 0.00 0.00 37.59 1.85
4399 5253 7.603651 AGCAGAGACGAATTTTACTCTTCTAA 58.396 34.615 0.00 0.00 37.59 2.10
4400 5254 7.159322 AGCAGAGACGAATTTTACTCTTCTA 57.841 36.000 0.00 0.00 37.59 2.10
4401 5255 6.031751 AGCAGAGACGAATTTTACTCTTCT 57.968 37.500 0.00 0.00 37.59 2.85
4402 5256 6.713792 AAGCAGAGACGAATTTTACTCTTC 57.286 37.500 0.00 0.00 37.59 2.87
4403 5257 6.128795 CGAAAGCAGAGACGAATTTTACTCTT 60.129 38.462 0.00 0.00 37.59 2.85
4404 5258 5.346281 CGAAAGCAGAGACGAATTTTACTCT 59.654 40.000 0.00 0.00 39.82 3.24
4405 5259 5.118817 ACGAAAGCAGAGACGAATTTTACTC 59.881 40.000 0.00 0.00 0.00 2.59
4406 5260 4.989168 ACGAAAGCAGAGACGAATTTTACT 59.011 37.500 0.00 0.00 0.00 2.24
4407 5261 5.107607 TGACGAAAGCAGAGACGAATTTTAC 60.108 40.000 0.00 0.00 0.00 2.01
4408 5262 4.986034 TGACGAAAGCAGAGACGAATTTTA 59.014 37.500 0.00 0.00 0.00 1.52
4416 5270 5.164954 ACTTAATCTGACGAAAGCAGAGAC 58.835 41.667 0.00 0.00 43.64 3.36
4422 5276 8.227791 TGTCATTTAACTTAATCTGACGAAAGC 58.772 33.333 14.23 0.00 35.32 3.51
4478 5363 9.701355 ACTTATTTTATTTTATTTTGCGCATGC 57.299 25.926 12.75 7.91 43.20 4.06
4490 5375 9.601971 GCTCACGTGTCAACTTATTTTATTTTA 57.398 29.630 16.51 0.00 0.00 1.52
4701 5605 6.530019 AAGAAAAGTCACTTTGGAACACAT 57.470 33.333 2.78 0.00 39.29 3.21
4754 5660 8.696043 TGGTATTGCTCTAATAAATCTTGCAT 57.304 30.769 0.00 0.00 33.22 3.96
4883 5789 3.056328 GCTGGAGGGCGGTGTTTC 61.056 66.667 0.00 0.00 0.00 2.78
4891 5798 1.075659 AAGAACCTTGCTGGAGGGC 59.924 57.895 0.00 0.00 41.31 5.19
4928 5838 2.904434 ACCGTTGTCTAAATCCCACTCT 59.096 45.455 0.00 0.00 0.00 3.24
5124 6218 6.433404 GCTTCATCCAATCATCACCATCTAAT 59.567 38.462 0.00 0.00 0.00 1.73
5208 6310 7.202972 AGTGTTATAACCCAGTATTGGCTTA 57.797 36.000 13.01 0.00 43.58 3.09
5269 6371 6.227298 AGAAGTCCAACTTATCATGACGAT 57.773 37.500 0.00 0.00 38.80 3.73
5306 6411 7.545265 CAGAGATTATCTTCTAGTATGCTTGCC 59.455 40.741 0.00 0.00 35.47 4.52
5350 6455 2.427410 CGTGCTTTTCAGGCGTGC 60.427 61.111 0.35 0.00 0.00 5.34
5357 6462 1.403323 TGTCACATTGCGTGCTTTTCA 59.597 42.857 0.00 0.00 45.92 2.69
5365 6470 1.952990 TCCAATTGTGTCACATTGCGT 59.047 42.857 6.48 0.00 0.00 5.24
5375 6480 1.072266 TGGGCTACCTCCAATTGTGT 58.928 50.000 4.43 1.46 37.76 3.72
5388 6493 2.828868 GATCCGGTGCATGGGCTA 59.171 61.111 0.00 0.00 41.91 3.93
5423 6528 2.166829 CCTATCCAGAGGTCATCGAGG 58.833 57.143 0.00 0.00 0.00 4.63
5448 6553 4.262635 GGAGCATCAGGGATCGATTCTTTA 60.263 45.833 3.13 0.00 36.25 1.85
5707 6814 4.402793 ACTCTAGCGATTACATGTGGTTCT 59.597 41.667 9.11 1.90 0.00 3.01
5828 7020 1.001760 GGCTCCCTCCTAGGTGACA 59.998 63.158 12.54 0.00 31.93 3.58
5872 7066 3.550431 CGCCATGATCCTCCCCGT 61.550 66.667 0.00 0.00 0.00 5.28
5969 7163 5.869649 AGGAAAATAGCAACTTTTGTGGT 57.130 34.783 0.00 0.00 0.00 4.16
6048 7244 8.912988 GTCATTTTTATTATTGTGAGGATGGGA 58.087 33.333 0.00 0.00 0.00 4.37
6049 7245 8.143835 GGTCATTTTTATTATTGTGAGGATGGG 58.856 37.037 0.00 0.00 0.00 4.00
6117 7404 9.892130 CATTTTAATTACTAGAGGAGGTCAGTT 57.108 33.333 0.00 0.00 0.00 3.16
6118 7405 7.988028 GCATTTTAATTACTAGAGGAGGTCAGT 59.012 37.037 0.00 0.00 0.00 3.41
6119 7406 7.442666 GGCATTTTAATTACTAGAGGAGGTCAG 59.557 40.741 0.00 0.00 0.00 3.51
6120 7407 7.092623 TGGCATTTTAATTACTAGAGGAGGTCA 60.093 37.037 0.00 0.00 0.00 4.02
6121 7408 7.280356 TGGCATTTTAATTACTAGAGGAGGTC 58.720 38.462 0.00 0.00 0.00 3.85
6122 7409 7.208064 TGGCATTTTAATTACTAGAGGAGGT 57.792 36.000 0.00 0.00 0.00 3.85
6123 7410 8.160106 AGATGGCATTTTAATTACTAGAGGAGG 58.840 37.037 0.00 0.00 0.00 4.30
6124 7411 9.213799 GAGATGGCATTTTAATTACTAGAGGAG 57.786 37.037 0.00 0.00 0.00 3.69
6125 7412 8.713971 TGAGATGGCATTTTAATTACTAGAGGA 58.286 33.333 0.00 0.00 0.00 3.71
6126 7413 8.778358 GTGAGATGGCATTTTAATTACTAGAGG 58.222 37.037 0.00 0.00 0.00 3.69
6127 7414 9.330063 TGTGAGATGGCATTTTAATTACTAGAG 57.670 33.333 0.00 0.00 0.00 2.43
6128 7415 9.679661 TTGTGAGATGGCATTTTAATTACTAGA 57.320 29.630 0.00 0.00 0.00 2.43
6141 7428 9.754382 GACATTTTTATTATTGTGAGATGGCAT 57.246 29.630 0.00 0.00 0.00 4.40
6142 7429 8.747471 TGACATTTTTATTATTGTGAGATGGCA 58.253 29.630 0.00 0.00 0.00 4.92
6143 7430 9.754382 ATGACATTTTTATTATTGTGAGATGGC 57.246 29.630 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.