Multiple sequence alignment - TraesCS1B01G349200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G349200 chr1B 100.000 5151 0 0 1 5151 579781378 579786528 0.000000e+00 9513.0
1 TraesCS1B01G349200 chr1B 76.026 463 84 20 3198 3643 181099582 181099130 1.120000e-51 215.0
2 TraesCS1B01G349200 chr1D 93.084 2328 105 18 1995 4287 427615893 427618199 0.000000e+00 3356.0
3 TraesCS1B01G349200 chr1D 92.335 1122 49 10 810 1926 427614807 427615896 0.000000e+00 1561.0
4 TraesCS1B01G349200 chr1D 87.751 498 50 5 230 720 427613947 427614440 5.790000e-159 571.0
5 TraesCS1B01G349200 chr1A 92.070 2333 126 18 1995 4287 522950940 522953253 0.000000e+00 3229.0
6 TraesCS1B01G349200 chr1A 98.962 867 9 0 4285 5151 306146468 306145602 0.000000e+00 1552.0
7 TraesCS1B01G349200 chr1A 91.022 1125 52 12 810 1926 522949860 522950943 0.000000e+00 1472.0
8 TraesCS1B01G349200 chr6B 99.423 866 5 0 4286 5151 71579742 71580607 0.000000e+00 1572.0
9 TraesCS1B01G349200 chr6B 96.770 867 27 1 4286 5151 705916934 705916068 0.000000e+00 1445.0
10 TraesCS1B01G349200 chr6B 87.500 64 5 3 721 781 225872688 225872625 2.570000e-08 71.3
11 TraesCS1B01G349200 chr4A 99.194 868 6 1 4285 5151 577862814 577863681 0.000000e+00 1563.0
12 TraesCS1B01G349200 chr4A 89.091 55 4 2 722 775 311662682 311662735 3.330000e-07 67.6
13 TraesCS1B01G349200 chr4A 93.023 43 3 0 1234 1276 695316934 695316976 4.310000e-06 63.9
14 TraesCS1B01G349200 chr4A 94.872 39 2 0 1235 1273 580693834 580693872 1.550000e-05 62.1
15 TraesCS1B01G349200 chr4A 88.000 50 6 0 1234 1283 695266520 695266569 5.570000e-05 60.2
16 TraesCS1B01G349200 chr7B 99.077 867 7 1 4285 5151 78112882 78113747 0.000000e+00 1555.0
17 TraesCS1B01G349200 chr7B 95.000 40 2 0 1234 1273 590135548 590135587 4.310000e-06 63.9
18 TraesCS1B01G349200 chr2B 98.962 867 9 0 4285 5151 46671927 46671061 0.000000e+00 1552.0
19 TraesCS1B01G349200 chr2B 96.678 873 27 2 4280 5151 704119956 704119085 0.000000e+00 1450.0
20 TraesCS1B01G349200 chr5A 96.770 867 25 1 4285 5151 13423239 13422376 0.000000e+00 1443.0
21 TraesCS1B01G349200 chr4B 96.540 867 30 0 4285 5151 484587186 484588052 0.000000e+00 1435.0
22 TraesCS1B01G349200 chr4B 90.385 52 4 1 728 779 667977415 667977365 3.330000e-07 67.6
23 TraesCS1B01G349200 chr3B 80.000 400 56 16 1060 1440 527241789 527241395 1.830000e-69 274.0
24 TraesCS1B01G349200 chr3B 95.000 40 2 0 1234 1273 626509026 626509065 4.310000e-06 63.9
25 TraesCS1B01G349200 chr3B 95.000 40 2 0 1234 1273 626545907 626545946 4.310000e-06 63.9
26 TraesCS1B01G349200 chr3A 91.457 199 17 0 1060 1258 522064945 522064747 1.830000e-69 274.0
27 TraesCS1B01G349200 chr3D 90.355 197 19 0 1060 1256 401680325 401680129 5.120000e-65 259.0
28 TraesCS1B01G349200 chr3D 84.848 66 6 4 702 766 179180458 179180520 4.310000e-06 63.9
29 TraesCS1B01G349200 chr5D 89.286 56 4 2 721 775 357878397 357878343 9.250000e-08 69.4
30 TraesCS1B01G349200 chr5D 85.938 64 4 5 721 780 128577623 128577685 4.310000e-06 63.9
31 TraesCS1B01G349200 chr5D 87.273 55 5 2 729 781 491004642 491004588 1.550000e-05 62.1
32 TraesCS1B01G349200 chr5B 91.667 48 3 1 1234 1280 700419918 700419871 1.200000e-06 65.8
33 TraesCS1B01G349200 chr5B 85.938 64 4 5 721 780 140965965 140966027 4.310000e-06 63.9
34 TraesCS1B01G349200 chr2D 83.562 73 6 6 728 795 643235867 643235938 4.310000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G349200 chr1B 579781378 579786528 5150 False 9513.000000 9513 100.000000 1 5151 1 chr1B.!!$F1 5150
1 TraesCS1B01G349200 chr1D 427613947 427618199 4252 False 1829.333333 3356 91.056667 230 4287 3 chr1D.!!$F1 4057
2 TraesCS1B01G349200 chr1A 522949860 522953253 3393 False 2350.500000 3229 91.546000 810 4287 2 chr1A.!!$F1 3477
3 TraesCS1B01G349200 chr1A 306145602 306146468 866 True 1552.000000 1552 98.962000 4285 5151 1 chr1A.!!$R1 866
4 TraesCS1B01G349200 chr6B 71579742 71580607 865 False 1572.000000 1572 99.423000 4286 5151 1 chr6B.!!$F1 865
5 TraesCS1B01G349200 chr6B 705916068 705916934 866 True 1445.000000 1445 96.770000 4286 5151 1 chr6B.!!$R2 865
6 TraesCS1B01G349200 chr4A 577862814 577863681 867 False 1563.000000 1563 99.194000 4285 5151 1 chr4A.!!$F2 866
7 TraesCS1B01G349200 chr7B 78112882 78113747 865 False 1555.000000 1555 99.077000 4285 5151 1 chr7B.!!$F1 866
8 TraesCS1B01G349200 chr2B 46671061 46671927 866 True 1552.000000 1552 98.962000 4285 5151 1 chr2B.!!$R1 866
9 TraesCS1B01G349200 chr2B 704119085 704119956 871 True 1450.000000 1450 96.678000 4280 5151 1 chr2B.!!$R2 871
10 TraesCS1B01G349200 chr5A 13422376 13423239 863 True 1443.000000 1443 96.770000 4285 5151 1 chr5A.!!$R1 866
11 TraesCS1B01G349200 chr4B 484587186 484588052 866 False 1435.000000 1435 96.540000 4285 5151 1 chr4B.!!$F1 866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.032403 TGTGTTGCATGAGCTTTGGC 59.968 50.0 0.00 0.00 42.74 4.52 F
226 227 0.032403 GTGTTGCATGAGCTTTGGCA 59.968 50.0 0.00 3.38 42.74 4.92 F
1579 1872 0.032813 AATGCAGGGAGATTGTGGGG 60.033 55.0 0.00 0.00 0.00 4.96 F
2381 2687 0.035630 ACCATCTGAGAAGCACAGGC 60.036 55.0 0.00 0.00 41.61 4.85 F
3187 3530 0.034089 GGTCTTCTGGGGACAATGGG 60.034 60.0 0.00 0.00 42.06 4.00 F
3937 4280 0.610232 ATGAAGCAGTGCCCCTCAAC 60.610 55.0 12.58 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 1866 0.116342 TCAGCTACTTCTCCCCCACA 59.884 55.0 0.00 0.0 0.00 4.17 R
1834 2131 0.855349 GCACGCTATGAAGGATCACG 59.145 55.0 0.00 0.0 38.69 4.35 R
3077 3420 0.741221 GTCGACCACAATCCCAGAGC 60.741 60.0 3.51 0.0 0.00 4.09 R
3937 4280 0.186630 TGGCCTGATTGGGGATGATG 59.813 55.0 3.32 0.0 36.00 3.07 R
4145 4488 0.745845 GGCATGTCGCATCTTCAGGT 60.746 55.0 0.00 0.0 45.17 4.00 R
4911 5256 1.799933 CCCTTGGAGTCTAGCCAGAT 58.200 55.0 0.00 0.0 36.64 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.343716 TGATTTCACATTGTGGCTTATTGT 57.656 33.333 16.46 0.00 33.87 2.71
25 26 6.757237 TGATTTCACATTGTGGCTTATTGTT 58.243 32.000 16.46 0.00 33.87 2.83
26 27 7.215789 TGATTTCACATTGTGGCTTATTGTTT 58.784 30.769 16.46 0.00 33.87 2.83
27 28 7.714377 TGATTTCACATTGTGGCTTATTGTTTT 59.286 29.630 16.46 0.00 33.87 2.43
28 29 7.856145 TTTCACATTGTGGCTTATTGTTTTT 57.144 28.000 16.46 0.00 33.87 1.94
29 30 6.841443 TCACATTGTGGCTTATTGTTTTTG 57.159 33.333 16.46 0.00 33.87 2.44
30 31 5.236047 TCACATTGTGGCTTATTGTTTTTGC 59.764 36.000 16.46 0.00 33.87 3.68
31 32 5.236911 CACATTGTGGCTTATTGTTTTTGCT 59.763 36.000 9.00 0.00 0.00 3.91
32 33 5.821995 ACATTGTGGCTTATTGTTTTTGCTT 59.178 32.000 0.00 0.00 0.00 3.91
33 34 6.318396 ACATTGTGGCTTATTGTTTTTGCTTT 59.682 30.769 0.00 0.00 0.00 3.51
34 35 7.497249 ACATTGTGGCTTATTGTTTTTGCTTTA 59.503 29.630 0.00 0.00 0.00 1.85
35 36 8.505625 CATTGTGGCTTATTGTTTTTGCTTTAT 58.494 29.630 0.00 0.00 0.00 1.40
36 37 7.650834 TGTGGCTTATTGTTTTTGCTTTATC 57.349 32.000 0.00 0.00 0.00 1.75
37 38 6.364706 TGTGGCTTATTGTTTTTGCTTTATCG 59.635 34.615 0.00 0.00 0.00 2.92
38 39 5.866633 TGGCTTATTGTTTTTGCTTTATCGG 59.133 36.000 0.00 0.00 0.00 4.18
39 40 5.290885 GGCTTATTGTTTTTGCTTTATCGGG 59.709 40.000 0.00 0.00 0.00 5.14
40 41 5.867174 GCTTATTGTTTTTGCTTTATCGGGT 59.133 36.000 0.00 0.00 0.00 5.28
41 42 6.183360 GCTTATTGTTTTTGCTTTATCGGGTG 60.183 38.462 0.00 0.00 0.00 4.61
42 43 3.651803 TGTTTTTGCTTTATCGGGTGG 57.348 42.857 0.00 0.00 0.00 4.61
43 44 2.959707 TGTTTTTGCTTTATCGGGTGGT 59.040 40.909 0.00 0.00 0.00 4.16
44 45 3.385111 TGTTTTTGCTTTATCGGGTGGTT 59.615 39.130 0.00 0.00 0.00 3.67
45 46 4.583489 TGTTTTTGCTTTATCGGGTGGTTA 59.417 37.500 0.00 0.00 0.00 2.85
46 47 5.158494 GTTTTTGCTTTATCGGGTGGTTAG 58.842 41.667 0.00 0.00 0.00 2.34
47 48 2.702592 TGCTTTATCGGGTGGTTAGG 57.297 50.000 0.00 0.00 0.00 2.69
48 49 1.306148 GCTTTATCGGGTGGTTAGGC 58.694 55.000 0.00 0.00 0.00 3.93
49 50 1.134189 GCTTTATCGGGTGGTTAGGCT 60.134 52.381 0.00 0.00 0.00 4.58
50 51 2.682858 GCTTTATCGGGTGGTTAGGCTT 60.683 50.000 0.00 0.00 0.00 4.35
51 52 3.432608 GCTTTATCGGGTGGTTAGGCTTA 60.433 47.826 0.00 0.00 0.00 3.09
52 53 4.773013 CTTTATCGGGTGGTTAGGCTTAA 58.227 43.478 0.00 0.00 0.00 1.85
53 54 5.374071 CTTTATCGGGTGGTTAGGCTTAAT 58.626 41.667 0.00 0.00 0.00 1.40
54 55 2.702592 TCGGGTGGTTAGGCTTAATG 57.297 50.000 0.00 0.00 0.00 1.90
55 56 2.189676 TCGGGTGGTTAGGCTTAATGA 58.810 47.619 0.00 0.00 0.00 2.57
56 57 2.775384 TCGGGTGGTTAGGCTTAATGAT 59.225 45.455 0.00 0.00 0.00 2.45
57 58 3.201266 TCGGGTGGTTAGGCTTAATGATT 59.799 43.478 0.00 0.00 0.00 2.57
58 59 3.951680 CGGGTGGTTAGGCTTAATGATTT 59.048 43.478 0.00 0.00 0.00 2.17
59 60 4.401202 CGGGTGGTTAGGCTTAATGATTTT 59.599 41.667 0.00 0.00 0.00 1.82
60 61 5.105513 CGGGTGGTTAGGCTTAATGATTTTT 60.106 40.000 0.00 0.00 0.00 1.94
84 85 5.715434 TTTCTTTGGTGCTATGGTTTACC 57.285 39.130 0.00 0.00 0.00 2.85
85 86 3.692690 TCTTTGGTGCTATGGTTTACCC 58.307 45.455 0.00 0.00 34.29 3.69
86 87 3.332485 TCTTTGGTGCTATGGTTTACCCT 59.668 43.478 0.00 0.00 34.29 4.34
87 88 3.818295 TTGGTGCTATGGTTTACCCTT 57.182 42.857 0.00 0.00 34.29 3.95
88 89 3.818295 TGGTGCTATGGTTTACCCTTT 57.182 42.857 0.00 0.00 34.29 3.11
89 90 4.120946 TGGTGCTATGGTTTACCCTTTT 57.879 40.909 0.00 0.00 34.29 2.27
90 91 3.829601 TGGTGCTATGGTTTACCCTTTTG 59.170 43.478 0.00 0.00 34.29 2.44
91 92 4.083565 GGTGCTATGGTTTACCCTTTTGA 58.916 43.478 0.00 0.00 34.29 2.69
92 93 4.525100 GGTGCTATGGTTTACCCTTTTGAA 59.475 41.667 0.00 0.00 34.29 2.69
93 94 5.186992 GGTGCTATGGTTTACCCTTTTGAAT 59.813 40.000 0.00 0.00 34.29 2.57
94 95 6.330278 GTGCTATGGTTTACCCTTTTGAATC 58.670 40.000 0.00 0.00 34.29 2.52
95 96 6.013379 TGCTATGGTTTACCCTTTTGAATCA 58.987 36.000 0.00 0.00 34.29 2.57
96 97 6.667414 TGCTATGGTTTACCCTTTTGAATCAT 59.333 34.615 0.00 0.00 34.29 2.45
97 98 7.836685 TGCTATGGTTTACCCTTTTGAATCATA 59.163 33.333 0.00 0.00 34.29 2.15
98 99 8.352942 GCTATGGTTTACCCTTTTGAATCATAG 58.647 37.037 9.66 9.66 35.68 2.23
99 100 6.524101 TGGTTTACCCTTTTGAATCATAGC 57.476 37.500 0.00 0.00 34.29 2.97
100 101 6.013379 TGGTTTACCCTTTTGAATCATAGCA 58.987 36.000 0.00 0.00 34.29 3.49
101 102 6.667414 TGGTTTACCCTTTTGAATCATAGCAT 59.333 34.615 0.00 0.00 34.29 3.79
102 103 7.180051 TGGTTTACCCTTTTGAATCATAGCATT 59.820 33.333 0.00 0.00 34.29 3.56
103 104 7.706607 GGTTTACCCTTTTGAATCATAGCATTC 59.293 37.037 0.00 0.00 33.90 2.67
104 105 7.953005 TTACCCTTTTGAATCATAGCATTCA 57.047 32.000 0.00 0.00 40.36 2.57
105 106 8.537728 TTACCCTTTTGAATCATAGCATTCAT 57.462 30.769 0.00 0.00 41.42 2.57
106 107 7.427989 ACCCTTTTGAATCATAGCATTCATT 57.572 32.000 0.00 0.00 41.42 2.57
107 108 7.854337 ACCCTTTTGAATCATAGCATTCATTT 58.146 30.769 0.00 0.00 41.42 2.32
108 109 7.983484 ACCCTTTTGAATCATAGCATTCATTTC 59.017 33.333 0.00 0.00 41.42 2.17
109 110 7.168637 CCCTTTTGAATCATAGCATTCATTTCG 59.831 37.037 0.00 0.00 41.42 3.46
110 111 7.916977 CCTTTTGAATCATAGCATTCATTTCGA 59.083 33.333 0.00 0.00 41.42 3.71
111 112 8.619146 TTTTGAATCATAGCATTCATTTCGAC 57.381 30.769 0.00 0.00 41.42 4.20
112 113 6.304356 TGAATCATAGCATTCATTTCGACC 57.696 37.500 0.00 0.00 37.77 4.79
113 114 5.821995 TGAATCATAGCATTCATTTCGACCA 59.178 36.000 0.00 0.00 37.77 4.02
114 115 5.679734 ATCATAGCATTCATTTCGACCAC 57.320 39.130 0.00 0.00 0.00 4.16
115 116 4.512484 TCATAGCATTCATTTCGACCACA 58.488 39.130 0.00 0.00 0.00 4.17
116 117 4.940654 TCATAGCATTCATTTCGACCACAA 59.059 37.500 0.00 0.00 0.00 3.33
117 118 3.559238 AGCATTCATTTCGACCACAAC 57.441 42.857 0.00 0.00 0.00 3.32
118 119 3.149196 AGCATTCATTTCGACCACAACT 58.851 40.909 0.00 0.00 0.00 3.16
119 120 4.323417 AGCATTCATTTCGACCACAACTA 58.677 39.130 0.00 0.00 0.00 2.24
120 121 4.943705 AGCATTCATTTCGACCACAACTAT 59.056 37.500 0.00 0.00 0.00 2.12
121 122 6.112734 AGCATTCATTTCGACCACAACTATA 58.887 36.000 0.00 0.00 0.00 1.31
122 123 6.767902 AGCATTCATTTCGACCACAACTATAT 59.232 34.615 0.00 0.00 0.00 0.86
123 124 7.283127 AGCATTCATTTCGACCACAACTATATT 59.717 33.333 0.00 0.00 0.00 1.28
124 125 7.915397 GCATTCATTTCGACCACAACTATATTT 59.085 33.333 0.00 0.00 0.00 1.40
125 126 9.787532 CATTCATTTCGACCACAACTATATTTT 57.212 29.630 0.00 0.00 0.00 1.82
127 128 9.834628 TTCATTTCGACCACAACTATATTTTTC 57.165 29.630 0.00 0.00 0.00 2.29
128 129 9.226606 TCATTTCGACCACAACTATATTTTTCT 57.773 29.630 0.00 0.00 0.00 2.52
154 155 2.189833 CCGGTCTCTCGGTTCATCA 58.810 57.895 0.00 0.00 44.60 3.07
155 156 0.179134 CCGGTCTCTCGGTTCATCAC 60.179 60.000 0.00 0.00 44.60 3.06
156 157 0.526211 CGGTCTCTCGGTTCATCACA 59.474 55.000 0.00 0.00 0.00 3.58
157 158 1.732732 CGGTCTCTCGGTTCATCACAC 60.733 57.143 0.00 0.00 0.00 3.82
158 159 1.546476 GGTCTCTCGGTTCATCACACT 59.454 52.381 0.00 0.00 0.00 3.55
159 160 2.028930 GGTCTCTCGGTTCATCACACTT 60.029 50.000 0.00 0.00 0.00 3.16
160 161 3.192844 GGTCTCTCGGTTCATCACACTTA 59.807 47.826 0.00 0.00 0.00 2.24
161 162 4.167268 GTCTCTCGGTTCATCACACTTAC 58.833 47.826 0.00 0.00 0.00 2.34
162 163 4.079970 TCTCTCGGTTCATCACACTTACT 58.920 43.478 0.00 0.00 0.00 2.24
163 164 4.523173 TCTCTCGGTTCATCACACTTACTT 59.477 41.667 0.00 0.00 0.00 2.24
164 165 5.708697 TCTCTCGGTTCATCACACTTACTTA 59.291 40.000 0.00 0.00 0.00 2.24
165 166 5.950883 TCTCGGTTCATCACACTTACTTAG 58.049 41.667 0.00 0.00 0.00 2.18
166 167 4.491676 TCGGTTCATCACACTTACTTAGC 58.508 43.478 0.00 0.00 0.00 3.09
167 168 4.021807 TCGGTTCATCACACTTACTTAGCA 60.022 41.667 0.00 0.00 0.00 3.49
168 169 4.327357 CGGTTCATCACACTTACTTAGCAG 59.673 45.833 0.00 0.00 0.00 4.24
169 170 4.631813 GGTTCATCACACTTACTTAGCAGG 59.368 45.833 0.00 0.00 0.00 4.85
170 171 5.238583 GTTCATCACACTTACTTAGCAGGT 58.761 41.667 0.00 0.00 0.00 4.00
171 172 5.073311 TCATCACACTTACTTAGCAGGTC 57.927 43.478 0.00 0.00 0.00 3.85
172 173 4.772624 TCATCACACTTACTTAGCAGGTCT 59.227 41.667 0.00 0.00 0.00 3.85
173 174 5.246203 TCATCACACTTACTTAGCAGGTCTT 59.754 40.000 0.00 0.00 0.00 3.01
174 175 6.436218 TCATCACACTTACTTAGCAGGTCTTA 59.564 38.462 0.00 0.00 0.00 2.10
175 176 6.852420 TCACACTTACTTAGCAGGTCTTAT 57.148 37.500 0.00 0.00 0.00 1.73
176 177 6.864342 TCACACTTACTTAGCAGGTCTTATC 58.136 40.000 0.00 0.00 0.00 1.75
177 178 5.744345 CACACTTACTTAGCAGGTCTTATCG 59.256 44.000 0.00 0.00 0.00 2.92
178 179 5.418209 ACACTTACTTAGCAGGTCTTATCGT 59.582 40.000 0.00 0.00 0.00 3.73
179 180 6.600822 ACACTTACTTAGCAGGTCTTATCGTA 59.399 38.462 0.00 0.00 0.00 3.43
180 181 7.284944 ACACTTACTTAGCAGGTCTTATCGTAT 59.715 37.037 0.00 0.00 0.00 3.06
181 182 8.136165 CACTTACTTAGCAGGTCTTATCGTATT 58.864 37.037 0.00 0.00 0.00 1.89
182 183 8.693625 ACTTACTTAGCAGGTCTTATCGTATTT 58.306 33.333 0.00 0.00 0.00 1.40
183 184 9.530633 CTTACTTAGCAGGTCTTATCGTATTTT 57.469 33.333 0.00 0.00 0.00 1.82
184 185 9.525409 TTACTTAGCAGGTCTTATCGTATTTTC 57.475 33.333 0.00 0.00 0.00 2.29
185 186 7.553334 ACTTAGCAGGTCTTATCGTATTTTCA 58.447 34.615 0.00 0.00 0.00 2.69
186 187 8.204836 ACTTAGCAGGTCTTATCGTATTTTCAT 58.795 33.333 0.00 0.00 0.00 2.57
187 188 9.692749 CTTAGCAGGTCTTATCGTATTTTCATA 57.307 33.333 0.00 0.00 0.00 2.15
190 191 8.993121 AGCAGGTCTTATCGTATTTTCATATTG 58.007 33.333 0.00 0.00 0.00 1.90
191 192 8.774586 GCAGGTCTTATCGTATTTTCATATTGT 58.225 33.333 0.00 0.00 0.00 2.71
193 194 9.832445 AGGTCTTATCGTATTTTCATATTGTGT 57.168 29.630 0.00 0.00 0.00 3.72
194 195 9.864034 GGTCTTATCGTATTTTCATATTGTGTG 57.136 33.333 0.00 0.00 0.00 3.82
195 196 9.370126 GTCTTATCGTATTTTCATATTGTGTGC 57.630 33.333 0.00 0.00 0.00 4.57
196 197 9.103861 TCTTATCGTATTTTCATATTGTGTGCA 57.896 29.630 0.00 0.00 0.00 4.57
197 198 9.158364 CTTATCGTATTTTCATATTGTGTGCAC 57.842 33.333 10.75 10.75 0.00 4.57
198 199 6.735678 TCGTATTTTCATATTGTGTGCACT 57.264 33.333 19.41 0.00 0.00 4.40
199 200 6.771076 TCGTATTTTCATATTGTGTGCACTC 58.229 36.000 19.41 15.51 0.00 3.51
200 201 6.593770 TCGTATTTTCATATTGTGTGCACTCT 59.406 34.615 19.41 2.03 0.00 3.24
201 202 7.762159 TCGTATTTTCATATTGTGTGCACTCTA 59.238 33.333 19.41 12.05 0.00 2.43
202 203 8.551205 CGTATTTTCATATTGTGTGCACTCTAT 58.449 33.333 19.41 18.28 0.00 1.98
203 204 9.869844 GTATTTTCATATTGTGTGCACTCTATC 57.130 33.333 19.41 4.24 0.00 2.08
204 205 8.743085 ATTTTCATATTGTGTGCACTCTATCT 57.257 30.769 19.41 6.89 0.00 1.98
205 206 8.565896 TTTTCATATTGTGTGCACTCTATCTT 57.434 30.769 19.41 5.77 0.00 2.40
206 207 8.565896 TTTCATATTGTGTGCACTCTATCTTT 57.434 30.769 19.41 3.46 0.00 2.52
207 208 7.543947 TCATATTGTGTGCACTCTATCTTTG 57.456 36.000 19.41 14.02 0.00 2.77
208 209 7.105588 TCATATTGTGTGCACTCTATCTTTGT 58.894 34.615 19.41 0.00 0.00 2.83
209 210 5.618056 ATTGTGTGCACTCTATCTTTGTG 57.382 39.130 19.41 0.00 35.08 3.33
210 211 4.071961 TGTGTGCACTCTATCTTTGTGT 57.928 40.909 19.41 0.00 34.52 3.72
211 212 4.450976 TGTGTGCACTCTATCTTTGTGTT 58.549 39.130 19.41 0.00 34.52 3.32
212 213 4.273235 TGTGTGCACTCTATCTTTGTGTTG 59.727 41.667 19.41 0.00 34.52 3.33
213 214 3.250762 TGTGCACTCTATCTTTGTGTTGC 59.749 43.478 19.41 0.00 34.52 4.17
214 215 3.250762 GTGCACTCTATCTTTGTGTTGCA 59.749 43.478 10.32 0.00 34.52 4.08
215 216 4.074259 TGCACTCTATCTTTGTGTTGCAT 58.926 39.130 0.00 0.00 34.52 3.96
216 217 4.083164 TGCACTCTATCTTTGTGTTGCATG 60.083 41.667 0.00 0.00 34.52 4.06
217 218 4.154737 GCACTCTATCTTTGTGTTGCATGA 59.845 41.667 0.00 0.00 34.52 3.07
218 219 5.673068 GCACTCTATCTTTGTGTTGCATGAG 60.673 44.000 0.00 0.00 34.52 2.90
219 220 4.394300 ACTCTATCTTTGTGTTGCATGAGC 59.606 41.667 0.00 0.00 42.57 4.26
220 221 4.582869 TCTATCTTTGTGTTGCATGAGCT 58.417 39.130 0.00 0.00 42.74 4.09
221 222 5.005740 TCTATCTTTGTGTTGCATGAGCTT 58.994 37.500 0.00 0.00 42.74 3.74
222 223 4.595762 ATCTTTGTGTTGCATGAGCTTT 57.404 36.364 0.00 0.00 42.74 3.51
223 224 3.708890 TCTTTGTGTTGCATGAGCTTTG 58.291 40.909 0.00 0.00 42.74 2.77
224 225 2.512485 TTGTGTTGCATGAGCTTTGG 57.488 45.000 0.00 0.00 42.74 3.28
225 226 0.032403 TGTGTTGCATGAGCTTTGGC 59.968 50.000 0.00 0.00 42.74 4.52
226 227 0.032403 GTGTTGCATGAGCTTTGGCA 59.968 50.000 0.00 3.38 42.74 4.92
227 228 0.970640 TGTTGCATGAGCTTTGGCAT 59.029 45.000 0.00 0.00 42.74 4.40
228 229 1.337354 TGTTGCATGAGCTTTGGCATG 60.337 47.619 8.41 8.41 43.56 4.06
260 261 5.535783 TCAATGCAAGGTTGAAAGATTCAGA 59.464 36.000 0.00 0.00 41.38 3.27
267 268 5.449553 AGGTTGAAAGATTCAGACCTTGTT 58.550 37.500 15.21 2.28 42.83 2.83
268 269 5.300286 AGGTTGAAAGATTCAGACCTTGTTG 59.700 40.000 15.21 0.00 42.83 3.33
276 277 5.879223 AGATTCAGACCTTGTTGTCATCATC 59.121 40.000 0.00 0.00 37.73 2.92
282 283 7.550551 TCAGACCTTGTTGTCATCATCTTTATC 59.449 37.037 0.00 0.00 37.73 1.75
285 286 7.397221 ACCTTGTTGTCATCATCTTTATCTGA 58.603 34.615 0.00 0.00 0.00 3.27
358 359 6.375455 ACCCTATTGTCATGTGATCAAAAGAC 59.625 38.462 13.28 13.28 0.00 3.01
363 364 4.574421 TGTCATGTGATCAAAAGACGTGTT 59.426 37.500 14.79 0.00 31.43 3.32
386 387 3.569701 GGTGAGCTCTTCATTTGGTTGAA 59.430 43.478 16.19 0.00 38.29 2.69
435 441 7.482169 TTCTATGACTAGGTGTTCTCACAAT 57.518 36.000 0.00 0.00 45.45 2.71
502 510 3.772387 TGCAGTTCATAATGGGTCCAAA 58.228 40.909 0.00 0.00 0.00 3.28
505 513 4.947388 GCAGTTCATAATGGGTCCAAACTA 59.053 41.667 4.34 0.00 0.00 2.24
512 520 6.667414 TCATAATGGGTCCAAACTAGCATTTT 59.333 34.615 0.00 0.00 0.00 1.82
519 527 2.595386 CAAACTAGCATTTTGCCGACC 58.405 47.619 0.00 0.00 46.52 4.79
564 572 8.571461 CATGGTCATGCCTATATCTAAAACAT 57.429 34.615 7.54 0.00 38.35 2.71
616 624 9.971922 ACTCTTTTTAAGTGGAATTTCATTCAG 57.028 29.630 0.00 0.00 41.03 3.02
617 625 9.971922 CTCTTTTTAAGTGGAATTTCATTCAGT 57.028 29.630 0.00 0.00 41.03 3.41
646 654 1.302511 GCGGAACTCATGGTGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
654 662 4.222124 ACTCATGGTGTGGTATTCCTTC 57.778 45.455 0.00 0.00 34.23 3.46
675 683 6.348786 CCTTCATCGTCAAATCAAGTTGATGT 60.349 38.462 18.94 11.05 42.63 3.06
679 687 4.275689 TCGTCAAATCAAGTTGATGTGCTT 59.724 37.500 25.50 11.79 40.95 3.91
681 689 4.614284 GTCAAATCAAGTTGATGTGCTTCG 59.386 41.667 25.50 7.40 40.95 3.79
694 702 1.297893 GCTTCGATGCGAATGGTGC 60.298 57.895 7.60 0.00 44.85 5.01
707 715 1.483595 ATGGTGCCGGATGGATCGAT 61.484 55.000 5.05 0.00 37.49 3.59
709 717 1.734477 GTGCCGGATGGATCGATCG 60.734 63.158 18.81 9.36 37.49 3.69
710 718 2.200337 TGCCGGATGGATCGATCGT 61.200 57.895 18.81 10.26 37.49 3.73
715 723 2.519963 CGGATGGATCGATCGTATGTG 58.480 52.381 18.81 7.03 0.00 3.21
720 728 3.146847 TGGATCGATCGTATGTGCTACT 58.853 45.455 18.81 0.00 0.00 2.57
721 729 3.188667 TGGATCGATCGTATGTGCTACTC 59.811 47.826 18.81 1.31 0.00 2.59
722 730 3.188667 GGATCGATCGTATGTGCTACTCA 59.811 47.826 18.81 0.00 0.00 3.41
723 731 3.604065 TCGATCGTATGTGCTACTCAC 57.396 47.619 15.94 0.00 45.82 3.51
724 732 3.203716 TCGATCGTATGTGCTACTCACT 58.796 45.455 15.94 0.00 45.81 3.41
725 733 3.247886 TCGATCGTATGTGCTACTCACTC 59.752 47.826 15.94 0.00 45.81 3.51
726 734 3.248841 CGATCGTATGTGCTACTCACTCT 59.751 47.826 7.03 0.00 45.81 3.24
727 735 4.532276 GATCGTATGTGCTACTCACTCTG 58.468 47.826 0.00 0.00 45.81 3.35
728 736 3.344515 TCGTATGTGCTACTCACTCTGT 58.655 45.455 0.00 0.00 45.81 3.41
730 738 4.571176 TCGTATGTGCTACTCACTCTGTAG 59.429 45.833 0.00 0.00 45.81 2.74
735 743 4.396478 TGTGCTACTCACTCTGTAGTCATC 59.604 45.833 0.00 0.00 45.81 2.92
737 745 5.818336 GTGCTACTCACTCTGTAGTCATCTA 59.182 44.000 0.00 0.00 42.38 1.98
738 746 6.316640 GTGCTACTCACTCTGTAGTCATCTAA 59.683 42.308 0.00 0.00 42.38 2.10
739 747 6.884836 TGCTACTCACTCTGTAGTCATCTAAA 59.115 38.462 0.00 0.00 39.47 1.85
740 748 7.148222 TGCTACTCACTCTGTAGTCATCTAAAC 60.148 40.741 0.00 0.00 39.47 2.01
742 750 4.982999 TCACTCTGTAGTCATCTAAACGC 58.017 43.478 0.00 0.00 31.97 4.84
743 751 4.700692 TCACTCTGTAGTCATCTAAACGCT 59.299 41.667 0.00 0.00 31.97 5.07
745 753 4.944930 ACTCTGTAGTCATCTAAACGCTCT 59.055 41.667 0.00 0.00 0.00 4.09
746 754 5.416326 ACTCTGTAGTCATCTAAACGCTCTT 59.584 40.000 0.00 0.00 0.00 2.85
747 755 6.598457 ACTCTGTAGTCATCTAAACGCTCTTA 59.402 38.462 0.00 0.00 0.00 2.10
749 757 8.672823 TCTGTAGTCATCTAAACGCTCTTATA 57.327 34.615 0.00 0.00 0.00 0.98
751 759 9.900710 CTGTAGTCATCTAAACGCTCTTATATT 57.099 33.333 0.00 0.00 0.00 1.28
764 772 8.649973 ACGCTCTTATATTTCTTTACAGAAGG 57.350 34.615 0.00 0.00 40.28 3.46
765 773 7.711339 ACGCTCTTATATTTCTTTACAGAAGGG 59.289 37.037 0.00 0.00 40.28 3.95
766 774 7.711339 CGCTCTTATATTTCTTTACAGAAGGGT 59.289 37.037 0.00 0.00 40.28 4.34
767 775 8.831550 GCTCTTATATTTCTTTACAGAAGGGTG 58.168 37.037 0.00 0.00 40.28 4.61
818 1103 8.178610 ACATGTTTTGTACTACCATGATGGTGT 61.179 37.037 26.62 21.95 43.87 4.16
847 1132 0.340208 GGAAAGAGAGGGAGGGAGGA 59.660 60.000 0.00 0.00 0.00 3.71
886 1171 7.189079 AGGACCAAACATTTTCCAAAACTAA 57.811 32.000 0.00 0.00 0.00 2.24
887 1172 7.045416 AGGACCAAACATTTTCCAAAACTAAC 58.955 34.615 0.00 0.00 0.00 2.34
889 1174 7.497579 GGACCAAACATTTTCCAAAACTAACAT 59.502 33.333 0.00 0.00 0.00 2.71
890 1175 8.207521 ACCAAACATTTTCCAAAACTAACATG 57.792 30.769 0.00 0.00 0.00 3.21
1481 1774 0.318529 CGGCAGGACGATCATCAGAG 60.319 60.000 0.00 0.00 35.47 3.35
1527 1820 3.717294 GGGACTGTGGATGGCGGT 61.717 66.667 0.00 0.00 0.00 5.68
1572 1865 1.144503 GGTCATGGAATGCAGGGAGAT 59.855 52.381 0.00 0.00 46.21 2.75
1573 1866 2.423947 GGTCATGGAATGCAGGGAGATT 60.424 50.000 0.00 0.00 46.21 2.40
1574 1867 2.621998 GTCATGGAATGCAGGGAGATTG 59.378 50.000 0.00 0.00 46.21 2.67
1575 1868 2.242965 TCATGGAATGCAGGGAGATTGT 59.757 45.455 0.00 0.00 46.21 2.71
1576 1869 2.133281 TGGAATGCAGGGAGATTGTG 57.867 50.000 0.00 0.00 0.00 3.33
1577 1870 1.341285 TGGAATGCAGGGAGATTGTGG 60.341 52.381 0.00 0.00 0.00 4.17
1578 1871 1.396653 GAATGCAGGGAGATTGTGGG 58.603 55.000 0.00 0.00 0.00 4.61
1579 1872 0.032813 AATGCAGGGAGATTGTGGGG 60.033 55.000 0.00 0.00 0.00 4.96
1580 1873 1.941403 ATGCAGGGAGATTGTGGGGG 61.941 60.000 0.00 0.00 0.00 5.40
1581 1874 2.308722 GCAGGGAGATTGTGGGGGA 61.309 63.158 0.00 0.00 0.00 4.81
1582 1875 1.918253 CAGGGAGATTGTGGGGGAG 59.082 63.158 0.00 0.00 0.00 4.30
1583 1876 0.621571 CAGGGAGATTGTGGGGGAGA 60.622 60.000 0.00 0.00 0.00 3.71
1717 2012 6.489700 AGTCATGTGGATGAAATTGTGTGTTA 59.510 34.615 0.00 0.00 40.39 2.41
1723 2018 7.172532 TGTGGATGAAATTGTGTGTTAGACTAC 59.827 37.037 0.00 0.00 0.00 2.73
1730 2025 9.640963 GAAATTGTGTGTTAGACTACTATGACT 57.359 33.333 0.00 0.00 0.00 3.41
1732 2027 9.640963 AATTGTGTGTTAGACTACTATGACTTC 57.359 33.333 0.00 0.00 0.00 3.01
1752 2049 8.644216 TGACTTCCTTACTGACTAAATGTGTAA 58.356 33.333 0.00 0.00 0.00 2.41
1753 2050 9.485206 GACTTCCTTACTGACTAAATGTGTAAA 57.515 33.333 0.00 0.00 0.00 2.01
1754 2051 9.841295 ACTTCCTTACTGACTAAATGTGTAAAA 57.159 29.630 0.00 0.00 0.00 1.52
1756 2053 9.841295 TTCCTTACTGACTAAATGTGTAAAACT 57.159 29.630 0.00 0.00 0.00 2.66
1757 2054 9.268268 TCCTTACTGACTAAATGTGTAAAACTG 57.732 33.333 0.00 0.00 0.00 3.16
1758 2055 9.052759 CCTTACTGACTAAATGTGTAAAACTGT 57.947 33.333 0.00 0.00 0.00 3.55
1807 2104 0.396811 AGTTGCCAGTTAGCTCCGTT 59.603 50.000 0.00 0.00 0.00 4.44
1808 2105 0.517316 GTTGCCAGTTAGCTCCGTTG 59.483 55.000 0.00 0.00 0.00 4.10
1834 2131 0.248377 GAAGCATTCTGATGTGCCGC 60.248 55.000 10.70 0.00 43.23 6.53
1845 2142 2.434185 GTGCCGCGTGATCCTTCA 60.434 61.111 4.92 0.00 0.00 3.02
1863 2160 6.862209 TCCTTCATAGCGTGCAAAAATTATT 58.138 32.000 0.00 0.00 0.00 1.40
1867 2164 8.972262 TTCATAGCGTGCAAAAATTATTGTAA 57.028 26.923 0.00 0.00 32.80 2.41
1872 2169 8.749841 AGCGTGCAAAAATTATTGTAATGTAA 57.250 26.923 0.00 0.00 32.80 2.41
1873 2170 8.643752 AGCGTGCAAAAATTATTGTAATGTAAC 58.356 29.630 0.00 0.00 32.80 2.50
1874 2171 7.895767 GCGTGCAAAAATTATTGTAATGTAACC 59.104 33.333 0.00 0.00 32.80 2.85
1875 2172 8.376942 CGTGCAAAAATTATTGTAATGTAACCC 58.623 33.333 0.00 0.00 32.80 4.11
1876 2173 9.209175 GTGCAAAAATTATTGTAATGTAACCCA 57.791 29.630 0.00 0.00 32.80 4.51
1877 2174 9.209175 TGCAAAAATTATTGTAATGTAACCCAC 57.791 29.630 0.00 0.00 32.80 4.61
1878 2175 9.209175 GCAAAAATTATTGTAATGTAACCCACA 57.791 29.630 0.00 0.00 35.66 4.17
1901 2198 6.264518 ACAATAACAGTTAAGGTTTGGTGAGG 59.735 38.462 0.00 0.00 0.00 3.86
1903 2200 4.086706 ACAGTTAAGGTTTGGTGAGGAG 57.913 45.455 0.00 0.00 0.00 3.69
1926 2223 5.409826 AGTTTTGTGCTAGCAGATACACTTC 59.590 40.000 20.03 3.22 34.14 3.01
1927 2224 4.808414 TTGTGCTAGCAGATACACTTCT 57.192 40.909 20.03 0.00 34.14 2.85
1928 2225 4.808414 TGTGCTAGCAGATACACTTCTT 57.192 40.909 20.03 0.00 34.14 2.52
1929 2226 5.152623 TGTGCTAGCAGATACACTTCTTT 57.847 39.130 20.03 0.00 34.14 2.52
1930 2227 4.931601 TGTGCTAGCAGATACACTTCTTTG 59.068 41.667 20.03 0.00 34.14 2.77
1931 2228 4.932200 GTGCTAGCAGATACACTTCTTTGT 59.068 41.667 20.03 0.00 0.00 2.83
1932 2229 5.409826 GTGCTAGCAGATACACTTCTTTGTT 59.590 40.000 20.03 0.00 0.00 2.83
1933 2230 5.639506 TGCTAGCAGATACACTTCTTTGTTC 59.360 40.000 14.93 0.00 0.00 3.18
1934 2231 5.639506 GCTAGCAGATACACTTCTTTGTTCA 59.360 40.000 10.63 0.00 0.00 3.18
1935 2232 6.314896 GCTAGCAGATACACTTCTTTGTTCAT 59.685 38.462 10.63 0.00 0.00 2.57
1936 2233 7.492669 GCTAGCAGATACACTTCTTTGTTCATA 59.507 37.037 10.63 0.00 0.00 2.15
1937 2234 9.371136 CTAGCAGATACACTTCTTTGTTCATAA 57.629 33.333 0.00 0.00 0.00 1.90
1938 2235 8.621532 AGCAGATACACTTCTTTGTTCATAAA 57.378 30.769 0.00 0.00 0.00 1.40
1939 2236 9.066892 AGCAGATACACTTCTTTGTTCATAAAA 57.933 29.630 0.00 0.00 0.00 1.52
1940 2237 9.334693 GCAGATACACTTCTTTGTTCATAAAAG 57.665 33.333 0.00 0.00 36.22 2.27
1944 2241 9.878599 ATACACTTCTTTGTTCATAAAAGTTCG 57.121 29.630 0.00 0.00 36.29 3.95
1945 2242 7.193595 ACACTTCTTTGTTCATAAAAGTTCGG 58.806 34.615 0.00 0.00 36.29 4.30
1946 2243 6.636850 CACTTCTTTGTTCATAAAAGTTCGGG 59.363 38.462 0.00 0.00 36.29 5.14
1947 2244 6.320418 ACTTCTTTGTTCATAAAAGTTCGGGT 59.680 34.615 0.00 0.00 36.29 5.28
1948 2245 7.499895 ACTTCTTTGTTCATAAAAGTTCGGGTA 59.500 33.333 0.00 0.00 36.29 3.69
1949 2246 7.193377 TCTTTGTTCATAAAAGTTCGGGTAC 57.807 36.000 0.00 0.00 36.29 3.34
1950 2247 6.993902 TCTTTGTTCATAAAAGTTCGGGTACT 59.006 34.615 0.00 0.00 36.29 2.73
1951 2248 7.499895 TCTTTGTTCATAAAAGTTCGGGTACTT 59.500 33.333 0.00 0.00 39.97 2.24
1953 2250 6.961576 TGTTCATAAAAGTTCGGGTACTTTG 58.038 36.000 10.50 2.60 45.13 2.77
1954 2251 6.016943 TGTTCATAAAAGTTCGGGTACTTTGG 60.017 38.462 10.50 5.89 45.13 3.28
1955 2252 5.867330 TCATAAAAGTTCGGGTACTTTGGA 58.133 37.500 10.50 7.46 45.13 3.53
1956 2253 5.702209 TCATAAAAGTTCGGGTACTTTGGAC 59.298 40.000 10.50 0.00 45.13 4.02
1957 2254 3.564053 AAAGTTCGGGTACTTTGGACA 57.436 42.857 9.41 0.00 44.42 4.02
1958 2255 3.564053 AAGTTCGGGTACTTTGGACAA 57.436 42.857 0.00 0.00 34.81 3.18
1959 2256 3.564053 AGTTCGGGTACTTTGGACAAA 57.436 42.857 0.00 0.00 0.00 2.83
1960 2257 5.163591 AAAAGTTCGGGTACTTTGGACAAAG 60.164 40.000 20.03 20.03 45.13 2.77
1970 2267 4.861102 CTTTGGACAAAGCAGGAGATTT 57.139 40.909 11.40 0.00 40.94 2.17
1977 2274 4.326504 CAAAGCAGGAGATTTGGTGTTT 57.673 40.909 0.00 0.00 44.99 2.83
1978 2275 4.696455 CAAAGCAGGAGATTTGGTGTTTT 58.304 39.130 0.00 0.00 44.99 2.43
1979 2276 5.118286 CAAAGCAGGAGATTTGGTGTTTTT 58.882 37.500 0.00 0.00 44.99 1.94
1980 2277 6.279882 CAAAGCAGGAGATTTGGTGTTTTTA 58.720 36.000 0.00 0.00 44.99 1.52
1981 2278 6.670695 AAGCAGGAGATTTGGTGTTTTTAT 57.329 33.333 0.00 0.00 0.00 1.40
1982 2279 6.670695 AGCAGGAGATTTGGTGTTTTTATT 57.329 33.333 0.00 0.00 0.00 1.40
1983 2280 7.775053 AGCAGGAGATTTGGTGTTTTTATTA 57.225 32.000 0.00 0.00 0.00 0.98
1984 2281 8.189119 AGCAGGAGATTTGGTGTTTTTATTAA 57.811 30.769 0.00 0.00 0.00 1.40
1985 2282 8.646900 AGCAGGAGATTTGGTGTTTTTATTAAA 58.353 29.630 0.00 0.00 0.00 1.52
1986 2283 9.435688 GCAGGAGATTTGGTGTTTTTATTAAAT 57.564 29.630 0.00 0.00 0.00 1.40
2052 2357 1.522668 TGTGTGCTTGGAGTACATGC 58.477 50.000 6.27 6.27 42.55 4.06
2059 2364 4.197107 GCTTGGAGTACATGCGATAAAC 57.803 45.455 0.00 0.00 39.94 2.01
2060 2365 3.002348 GCTTGGAGTACATGCGATAAACC 59.998 47.826 0.00 0.00 39.94 3.27
2093 2398 7.789273 TTTTAACTGAACCACTATGTTTCGA 57.211 32.000 0.00 0.00 0.00 3.71
2104 2409 4.979197 CACTATGTTTCGATAGCAGTCTCC 59.021 45.833 0.00 0.00 30.10 3.71
2115 2420 2.050144 AGCAGTCTCCCTCTTTGTTGA 58.950 47.619 0.00 0.00 0.00 3.18
2116 2421 2.147150 GCAGTCTCCCTCTTTGTTGAC 58.853 52.381 0.00 0.00 0.00 3.18
2117 2422 2.224402 GCAGTCTCCCTCTTTGTTGACT 60.224 50.000 0.00 0.00 35.48 3.41
2120 2425 3.711704 AGTCTCCCTCTTTGTTGACTTGA 59.288 43.478 0.00 0.00 31.71 3.02
2145 2450 8.964476 AACTACTTATGATCCTGTTATTGGTG 57.036 34.615 0.00 0.00 0.00 4.17
2154 2459 2.151202 CTGTTATTGGTGTTGTCGGCT 58.849 47.619 0.00 0.00 0.00 5.52
2161 2466 1.414919 TGGTGTTGTCGGCTACTTCTT 59.585 47.619 2.81 0.00 0.00 2.52
2162 2467 2.158871 TGGTGTTGTCGGCTACTTCTTT 60.159 45.455 2.81 0.00 0.00 2.52
2208 2513 4.765273 TGTATGCATTGTCCGTAGTTGAT 58.235 39.130 3.54 0.00 0.00 2.57
2270 2575 7.290948 AGTCCCACATCTTCATATGAGATAACA 59.709 37.037 5.39 0.00 0.00 2.41
2381 2687 0.035630 ACCATCTGAGAAGCACAGGC 60.036 55.000 0.00 0.00 41.61 4.85
2412 2718 7.303634 AGTACAGTTTATTCATTGGCTAACG 57.696 36.000 0.00 0.00 0.00 3.18
2423 2729 7.979115 TTCATTGGCTAACGCAATTATAAAC 57.021 32.000 0.00 0.00 38.10 2.01
2424 2730 7.089770 TCATTGGCTAACGCAATTATAAACA 57.910 32.000 0.00 0.00 38.10 2.83
2430 2740 5.969435 GCTAACGCAATTATAAACAGGAACC 59.031 40.000 0.00 0.00 35.78 3.62
2434 2744 7.633193 ACGCAATTATAAACAGGAACCAATA 57.367 32.000 0.00 0.00 0.00 1.90
2461 2771 6.443849 TGACCTTCCTAAGTTTAGATGGTGAT 59.556 38.462 13.79 0.00 32.47 3.06
2478 2788 3.444916 GTGATGCCTTGCTTGATGATTG 58.555 45.455 0.00 0.00 0.00 2.67
2480 2790 3.119280 TGATGCCTTGCTTGATGATTGTG 60.119 43.478 0.00 0.00 0.00 3.33
2495 2805 6.823182 TGATGATTGTGTATCTCCGTTGAAAT 59.177 34.615 0.00 0.00 34.17 2.17
2501 2811 8.420374 TTGTGTATCTCCGTTGAAATAAGATC 57.580 34.615 0.00 0.00 0.00 2.75
2550 2861 2.105821 CTGGTCCAAACTGGTCCTGTTA 59.894 50.000 13.96 0.00 44.55 2.41
2558 2869 8.198778 GTCCAAACTGGTCCTGTTAAATTTTAA 58.801 33.333 13.96 0.00 39.03 1.52
2634 2946 1.269174 TGAACCCATGCACGTTTGATG 59.731 47.619 0.00 0.00 0.00 3.07
2646 2958 4.289342 CACGTTTGATGATGCTTTTGTGA 58.711 39.130 0.00 0.00 0.00 3.58
2716 3036 4.852134 AAGTGCTTGTCAATATGTGCAA 57.148 36.364 0.00 0.00 32.10 4.08
2743 3064 3.060070 GCGTTGTTACTTGTCAGTACACC 60.060 47.826 0.00 0.00 35.05 4.16
2770 3093 5.730550 TCTTGGTATGTCTGGTGATTGTAC 58.269 41.667 0.00 0.00 0.00 2.90
2921 3264 2.332063 ATAACCAGCCGGAACATCAG 57.668 50.000 5.05 0.00 35.59 2.90
2931 3274 2.489329 CCGGAACATCAGCAGTTCAATT 59.511 45.455 0.00 0.00 45.45 2.32
2959 3302 7.117523 GCCACTAGATCTGCAACATTCTAATAG 59.882 40.741 5.18 0.00 0.00 1.73
3039 3382 2.168313 TCAGACTTGCTCACAACAGTCA 59.832 45.455 0.00 0.00 34.83 3.41
3044 3387 1.227943 GCTCACAACAGTCAGCCCA 60.228 57.895 0.00 0.00 0.00 5.36
3077 3420 1.070445 TTTGGGGCCAAAATGTGCG 59.930 52.632 4.39 0.00 42.16 5.34
3137 3480 1.765904 TGTCAAGACTACTGCAACCCA 59.234 47.619 1.53 0.00 0.00 4.51
3149 3492 0.316204 GCAACCCATATCATGCTGGC 59.684 55.000 3.90 0.00 35.93 4.85
3184 3527 2.278245 TGATGGTCTTCTGGGGACAAT 58.722 47.619 0.00 0.00 42.06 2.71
3186 3529 0.698238 TGGTCTTCTGGGGACAATGG 59.302 55.000 0.00 0.00 42.06 3.16
3187 3530 0.034089 GGTCTTCTGGGGACAATGGG 60.034 60.000 0.00 0.00 42.06 4.00
3188 3531 0.991920 GTCTTCTGGGGACAATGGGA 59.008 55.000 0.00 0.00 42.06 4.37
3189 3532 1.354368 GTCTTCTGGGGACAATGGGAA 59.646 52.381 0.00 0.00 42.06 3.97
3190 3533 1.354368 TCTTCTGGGGACAATGGGAAC 59.646 52.381 0.00 0.00 42.06 3.62
3191 3534 1.075374 CTTCTGGGGACAATGGGAACA 59.925 52.381 0.00 0.00 42.06 3.18
3192 3535 1.153539 TCTGGGGACAATGGGAACAA 58.846 50.000 0.00 0.00 42.06 2.83
3193 3536 1.075374 TCTGGGGACAATGGGAACAAG 59.925 52.381 0.00 0.00 42.06 3.16
3194 3537 1.075374 CTGGGGACAATGGGAACAAGA 59.925 52.381 0.00 0.00 42.06 3.02
3239 3582 1.758862 GATTTGAAAGATGGGCCCCTG 59.241 52.381 22.27 0.00 0.00 4.45
3295 3638 4.640771 ATGTTGGTATTCCTGTCTGTGT 57.359 40.909 0.00 0.00 34.23 3.72
3308 3651 1.073025 CTGTGTAGGGGCTGCAACA 59.927 57.895 0.50 0.00 0.00 3.33
3409 3752 7.346695 CAAATTCTTGTGCTAATTGTTGGTTG 58.653 34.615 0.00 0.00 0.00 3.77
3493 3836 5.070001 TGGTTATTCTTTGACAGACCAAGG 58.930 41.667 0.00 0.00 0.00 3.61
3655 3998 3.005791 GCAACTATGAGTGGCACCTTTTT 59.994 43.478 15.27 0.00 44.56 1.94
3667 4010 7.118723 AGTGGCACCTTTTTGAATATGAGATA 58.881 34.615 15.27 0.00 0.00 1.98
3823 4166 3.670377 GTGGACAACAAGCGGGGC 61.670 66.667 0.00 0.00 0.00 5.80
3846 4189 2.481289 AGGAGCAAGACAAAGGCTAC 57.519 50.000 0.00 0.00 38.15 3.58
3937 4280 0.610232 ATGAAGCAGTGCCCCTCAAC 60.610 55.000 12.58 0.00 0.00 3.18
3938 4281 1.228245 GAAGCAGTGCCCCTCAACA 60.228 57.895 12.58 0.00 0.00 3.33
3939 4282 0.610232 GAAGCAGTGCCCCTCAACAT 60.610 55.000 12.58 0.00 0.00 2.71
3977 4320 1.474077 GTGCCTCCAATGCTTACCAAG 59.526 52.381 0.00 0.00 0.00 3.61
4018 4361 3.512680 CAATCAGGACAGTACCTCGAAC 58.487 50.000 0.00 0.00 38.32 3.95
4039 4382 2.874086 CGCCTATGAAGATGCATCACAA 59.126 45.455 27.81 12.93 0.00 3.33
4105 4448 4.171234 CTCATCTCCCATATGGTTACCCT 58.829 47.826 20.46 0.00 34.77 4.34
4120 4463 1.078426 CCCTGACGGAAAAGGCGAT 60.078 57.895 0.00 0.00 31.71 4.58
4159 4502 2.456119 CGGCACCTGAAGATGCGAC 61.456 63.158 0.00 0.00 43.02 5.19
4467 4811 5.184711 ACAAACATTTCCAACAAGCAACAT 58.815 33.333 0.00 0.00 0.00 2.71
4677 5022 4.068599 GAGAGACTTCTCCACCTTTTTGG 58.931 47.826 2.47 0.00 43.38 3.28
4911 5256 3.326588 ACCTGCACACACCATAAAGTCTA 59.673 43.478 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.656707 AAACAATAAGCCACAATGTGAAATC 57.343 32.000 15.91 1.17 35.23 2.17
3 4 8.344098 CAAAAACAATAAGCCACAATGTGAAAT 58.656 29.630 15.91 2.62 35.23 2.17
6 7 5.236047 GCAAAAACAATAAGCCACAATGTGA 59.764 36.000 15.91 0.00 35.23 3.58
7 8 5.236911 AGCAAAAACAATAAGCCACAATGTG 59.763 36.000 6.37 6.37 0.00 3.21
8 9 5.367302 AGCAAAAACAATAAGCCACAATGT 58.633 33.333 0.00 0.00 0.00 2.71
9 10 5.927954 AGCAAAAACAATAAGCCACAATG 57.072 34.783 0.00 0.00 0.00 2.82
10 11 6.940831 AAAGCAAAAACAATAAGCCACAAT 57.059 29.167 0.00 0.00 0.00 2.71
11 12 7.095857 CGATAAAGCAAAAACAATAAGCCACAA 60.096 33.333 0.00 0.00 0.00 3.33
12 13 6.364706 CGATAAAGCAAAAACAATAAGCCACA 59.635 34.615 0.00 0.00 0.00 4.17
13 14 6.183360 CCGATAAAGCAAAAACAATAAGCCAC 60.183 38.462 0.00 0.00 0.00 5.01
14 15 5.866633 CCGATAAAGCAAAAACAATAAGCCA 59.133 36.000 0.00 0.00 0.00 4.75
15 16 5.290885 CCCGATAAAGCAAAAACAATAAGCC 59.709 40.000 0.00 0.00 0.00 4.35
16 17 5.867174 ACCCGATAAAGCAAAAACAATAAGC 59.133 36.000 0.00 0.00 0.00 3.09
17 18 6.310224 CCACCCGATAAAGCAAAAACAATAAG 59.690 38.462 0.00 0.00 0.00 1.73
18 19 6.159988 CCACCCGATAAAGCAAAAACAATAA 58.840 36.000 0.00 0.00 0.00 1.40
19 20 5.244178 ACCACCCGATAAAGCAAAAACAATA 59.756 36.000 0.00 0.00 0.00 1.90
20 21 4.039852 ACCACCCGATAAAGCAAAAACAAT 59.960 37.500 0.00 0.00 0.00 2.71
21 22 3.385111 ACCACCCGATAAAGCAAAAACAA 59.615 39.130 0.00 0.00 0.00 2.83
22 23 2.959707 ACCACCCGATAAAGCAAAAACA 59.040 40.909 0.00 0.00 0.00 2.83
23 24 3.653539 ACCACCCGATAAAGCAAAAAC 57.346 42.857 0.00 0.00 0.00 2.43
24 25 4.218852 CCTAACCACCCGATAAAGCAAAAA 59.781 41.667 0.00 0.00 0.00 1.94
25 26 3.759618 CCTAACCACCCGATAAAGCAAAA 59.240 43.478 0.00 0.00 0.00 2.44
26 27 3.349022 CCTAACCACCCGATAAAGCAAA 58.651 45.455 0.00 0.00 0.00 3.68
27 28 2.942306 GCCTAACCACCCGATAAAGCAA 60.942 50.000 0.00 0.00 0.00 3.91
28 29 1.407712 GCCTAACCACCCGATAAAGCA 60.408 52.381 0.00 0.00 0.00 3.91
29 30 1.134189 AGCCTAACCACCCGATAAAGC 60.134 52.381 0.00 0.00 0.00 3.51
30 31 3.277142 AAGCCTAACCACCCGATAAAG 57.723 47.619 0.00 0.00 0.00 1.85
31 32 4.840716 TTAAGCCTAACCACCCGATAAA 57.159 40.909 0.00 0.00 0.00 1.40
32 33 4.409574 TCATTAAGCCTAACCACCCGATAA 59.590 41.667 0.00 0.00 0.00 1.75
33 34 3.968649 TCATTAAGCCTAACCACCCGATA 59.031 43.478 0.00 0.00 0.00 2.92
34 35 2.775384 TCATTAAGCCTAACCACCCGAT 59.225 45.455 0.00 0.00 0.00 4.18
35 36 2.189676 TCATTAAGCCTAACCACCCGA 58.810 47.619 0.00 0.00 0.00 5.14
36 37 2.702592 TCATTAAGCCTAACCACCCG 57.297 50.000 0.00 0.00 0.00 5.28
37 38 5.932619 AAAATCATTAAGCCTAACCACCC 57.067 39.130 0.00 0.00 0.00 4.61
60 61 6.463190 GGGTAAACCATAGCACCAAAGAAAAA 60.463 38.462 0.81 0.00 39.85 1.94
61 62 5.011227 GGGTAAACCATAGCACCAAAGAAAA 59.989 40.000 0.81 0.00 39.85 2.29
62 63 4.525100 GGGTAAACCATAGCACCAAAGAAA 59.475 41.667 0.81 0.00 39.85 2.52
63 64 4.083565 GGGTAAACCATAGCACCAAAGAA 58.916 43.478 0.81 0.00 39.85 2.52
64 65 3.332485 AGGGTAAACCATAGCACCAAAGA 59.668 43.478 0.81 0.00 43.89 2.52
65 66 3.697166 AGGGTAAACCATAGCACCAAAG 58.303 45.455 0.81 0.00 43.89 2.77
66 67 3.818295 AGGGTAAACCATAGCACCAAA 57.182 42.857 0.81 0.00 43.89 3.28
67 68 3.818295 AAGGGTAAACCATAGCACCAA 57.182 42.857 0.81 0.00 43.89 3.67
68 69 3.818295 AAAGGGTAAACCATAGCACCA 57.182 42.857 0.81 0.00 43.89 4.17
69 70 4.083565 TCAAAAGGGTAAACCATAGCACC 58.916 43.478 0.81 0.00 43.89 5.01
70 71 5.715434 TTCAAAAGGGTAAACCATAGCAC 57.285 39.130 0.81 0.00 43.89 4.40
71 72 6.013379 TGATTCAAAAGGGTAAACCATAGCA 58.987 36.000 0.81 0.00 43.89 3.49
72 73 6.524101 TGATTCAAAAGGGTAAACCATAGC 57.476 37.500 0.81 0.00 43.89 2.97
73 74 8.352942 GCTATGATTCAAAAGGGTAAACCATAG 58.647 37.037 0.81 0.00 43.89 2.23
74 75 7.836685 TGCTATGATTCAAAAGGGTAAACCATA 59.163 33.333 0.81 0.00 43.89 2.74
75 76 6.667414 TGCTATGATTCAAAAGGGTAAACCAT 59.333 34.615 0.81 0.00 43.89 3.55
76 77 6.013379 TGCTATGATTCAAAAGGGTAAACCA 58.987 36.000 0.81 0.00 43.89 3.67
77 78 6.524101 TGCTATGATTCAAAAGGGTAAACC 57.476 37.500 0.00 0.00 40.67 3.27
78 79 8.250332 TGAATGCTATGATTCAAAAGGGTAAAC 58.750 33.333 0.00 0.00 39.00 2.01
79 80 8.359875 TGAATGCTATGATTCAAAAGGGTAAA 57.640 30.769 0.00 0.00 39.00 2.01
80 81 7.953005 TGAATGCTATGATTCAAAAGGGTAA 57.047 32.000 0.00 0.00 39.00 2.85
81 82 8.537728 AATGAATGCTATGATTCAAAAGGGTA 57.462 30.769 0.00 0.00 43.77 3.69
82 83 7.427989 AATGAATGCTATGATTCAAAAGGGT 57.572 32.000 0.00 0.00 43.77 4.34
83 84 7.168637 CGAAATGAATGCTATGATTCAAAAGGG 59.831 37.037 0.00 0.00 43.77 3.95
84 85 7.916977 TCGAAATGAATGCTATGATTCAAAAGG 59.083 33.333 0.00 0.00 43.77 3.11
85 86 8.740369 GTCGAAATGAATGCTATGATTCAAAAG 58.260 33.333 0.00 0.00 43.77 2.27
86 87 7.701924 GGTCGAAATGAATGCTATGATTCAAAA 59.298 33.333 0.00 0.00 43.77 2.44
87 88 7.148103 TGGTCGAAATGAATGCTATGATTCAAA 60.148 33.333 0.00 0.00 43.77 2.69
88 89 6.318396 TGGTCGAAATGAATGCTATGATTCAA 59.682 34.615 0.00 0.00 43.77 2.69
89 90 5.821995 TGGTCGAAATGAATGCTATGATTCA 59.178 36.000 0.00 0.00 44.47 2.57
90 91 6.138761 GTGGTCGAAATGAATGCTATGATTC 58.861 40.000 0.00 0.00 33.59 2.52
91 92 5.589855 TGTGGTCGAAATGAATGCTATGATT 59.410 36.000 0.00 0.00 0.00 2.57
92 93 5.125356 TGTGGTCGAAATGAATGCTATGAT 58.875 37.500 0.00 0.00 0.00 2.45
93 94 4.512484 TGTGGTCGAAATGAATGCTATGA 58.488 39.130 0.00 0.00 0.00 2.15
94 95 4.880886 TGTGGTCGAAATGAATGCTATG 57.119 40.909 0.00 0.00 0.00 2.23
95 96 4.943705 AGTTGTGGTCGAAATGAATGCTAT 59.056 37.500 0.00 0.00 0.00 2.97
96 97 4.323417 AGTTGTGGTCGAAATGAATGCTA 58.677 39.130 0.00 0.00 0.00 3.49
97 98 3.149196 AGTTGTGGTCGAAATGAATGCT 58.851 40.909 0.00 0.00 0.00 3.79
98 99 3.559238 AGTTGTGGTCGAAATGAATGC 57.441 42.857 0.00 0.00 0.00 3.56
99 100 9.787532 AAAATATAGTTGTGGTCGAAATGAATG 57.212 29.630 0.00 0.00 0.00 2.67
101 102 9.834628 GAAAAATATAGTTGTGGTCGAAATGAA 57.165 29.630 0.00 0.00 0.00 2.57
102 103 9.226606 AGAAAAATATAGTTGTGGTCGAAATGA 57.773 29.630 0.00 0.00 0.00 2.57
137 138 0.526211 TGTGATGAACCGAGAGACCG 59.474 55.000 0.00 0.00 0.00 4.79
138 139 1.546476 AGTGTGATGAACCGAGAGACC 59.454 52.381 0.00 0.00 0.00 3.85
139 140 3.305398 AAGTGTGATGAACCGAGAGAC 57.695 47.619 0.00 0.00 0.00 3.36
140 141 4.079970 AGTAAGTGTGATGAACCGAGAGA 58.920 43.478 0.00 0.00 0.00 3.10
141 142 4.442375 AGTAAGTGTGATGAACCGAGAG 57.558 45.455 0.00 0.00 0.00 3.20
142 143 4.866508 AAGTAAGTGTGATGAACCGAGA 57.133 40.909 0.00 0.00 0.00 4.04
143 144 4.563184 GCTAAGTAAGTGTGATGAACCGAG 59.437 45.833 0.00 0.00 0.00 4.63
144 145 4.021807 TGCTAAGTAAGTGTGATGAACCGA 60.022 41.667 0.00 0.00 0.00 4.69
145 146 4.242475 TGCTAAGTAAGTGTGATGAACCG 58.758 43.478 0.00 0.00 0.00 4.44
146 147 4.631813 CCTGCTAAGTAAGTGTGATGAACC 59.368 45.833 0.00 0.00 0.00 3.62
147 148 5.238583 ACCTGCTAAGTAAGTGTGATGAAC 58.761 41.667 0.00 0.00 0.00 3.18
148 149 5.246203 AGACCTGCTAAGTAAGTGTGATGAA 59.754 40.000 0.00 0.00 0.00 2.57
149 150 4.772624 AGACCTGCTAAGTAAGTGTGATGA 59.227 41.667 0.00 0.00 0.00 2.92
150 151 5.078411 AGACCTGCTAAGTAAGTGTGATG 57.922 43.478 0.00 0.00 0.00 3.07
151 152 5.746990 AAGACCTGCTAAGTAAGTGTGAT 57.253 39.130 0.00 0.00 0.00 3.06
152 153 6.404403 CGATAAGACCTGCTAAGTAAGTGTGA 60.404 42.308 0.00 0.00 0.00 3.58
153 154 5.744345 CGATAAGACCTGCTAAGTAAGTGTG 59.256 44.000 0.00 0.00 0.00 3.82
154 155 5.418209 ACGATAAGACCTGCTAAGTAAGTGT 59.582 40.000 0.00 0.00 0.00 3.55
155 156 5.892568 ACGATAAGACCTGCTAAGTAAGTG 58.107 41.667 0.00 0.00 0.00 3.16
156 157 7.820578 ATACGATAAGACCTGCTAAGTAAGT 57.179 36.000 0.00 0.00 0.00 2.24
157 158 9.530633 AAAATACGATAAGACCTGCTAAGTAAG 57.469 33.333 0.00 0.00 0.00 2.34
158 159 9.525409 GAAAATACGATAAGACCTGCTAAGTAA 57.475 33.333 0.00 0.00 0.00 2.24
159 160 8.689061 TGAAAATACGATAAGACCTGCTAAGTA 58.311 33.333 0.00 0.00 0.00 2.24
160 161 7.553334 TGAAAATACGATAAGACCTGCTAAGT 58.447 34.615 0.00 0.00 0.00 2.24
161 162 8.594881 ATGAAAATACGATAAGACCTGCTAAG 57.405 34.615 0.00 0.00 0.00 2.18
164 165 8.993121 CAATATGAAAATACGATAAGACCTGCT 58.007 33.333 0.00 0.00 0.00 4.24
165 166 8.774586 ACAATATGAAAATACGATAAGACCTGC 58.225 33.333 0.00 0.00 0.00 4.85
167 168 9.832445 ACACAATATGAAAATACGATAAGACCT 57.168 29.630 0.00 0.00 0.00 3.85
168 169 9.864034 CACACAATATGAAAATACGATAAGACC 57.136 33.333 0.00 0.00 0.00 3.85
169 170 9.370126 GCACACAATATGAAAATACGATAAGAC 57.630 33.333 0.00 0.00 0.00 3.01
170 171 9.103861 TGCACACAATATGAAAATACGATAAGA 57.896 29.630 0.00 0.00 0.00 2.10
171 172 9.158364 GTGCACACAATATGAAAATACGATAAG 57.842 33.333 13.17 0.00 0.00 1.73
172 173 8.888716 AGTGCACACAATATGAAAATACGATAA 58.111 29.630 21.04 0.00 0.00 1.75
173 174 8.432110 AGTGCACACAATATGAAAATACGATA 57.568 30.769 21.04 0.00 0.00 2.92
174 175 7.280876 AGAGTGCACACAATATGAAAATACGAT 59.719 33.333 21.04 0.00 0.00 3.73
175 176 6.593770 AGAGTGCACACAATATGAAAATACGA 59.406 34.615 21.04 0.00 0.00 3.43
176 177 6.775088 AGAGTGCACACAATATGAAAATACG 58.225 36.000 21.04 0.00 0.00 3.06
177 178 9.869844 GATAGAGTGCACACAATATGAAAATAC 57.130 33.333 21.04 0.00 0.00 1.89
178 179 9.836864 AGATAGAGTGCACACAATATGAAAATA 57.163 29.630 21.04 0.00 0.00 1.40
179 180 8.743085 AGATAGAGTGCACACAATATGAAAAT 57.257 30.769 21.04 0.00 0.00 1.82
180 181 8.565896 AAGATAGAGTGCACACAATATGAAAA 57.434 30.769 21.04 0.00 0.00 2.29
181 182 8.453320 CAAAGATAGAGTGCACACAATATGAAA 58.547 33.333 21.04 0.00 0.00 2.69
182 183 7.607607 ACAAAGATAGAGTGCACACAATATGAA 59.392 33.333 21.04 0.00 0.00 2.57
183 184 7.064966 CACAAAGATAGAGTGCACACAATATGA 59.935 37.037 21.04 0.00 0.00 2.15
184 185 7.148356 ACACAAAGATAGAGTGCACACAATATG 60.148 37.037 21.04 10.34 36.76 1.78
185 186 6.881065 ACACAAAGATAGAGTGCACACAATAT 59.119 34.615 21.04 10.84 36.76 1.28
186 187 6.230472 ACACAAAGATAGAGTGCACACAATA 58.770 36.000 21.04 6.21 36.76 1.90
187 188 5.065914 ACACAAAGATAGAGTGCACACAAT 58.934 37.500 21.04 8.59 36.76 2.71
188 189 4.450976 ACACAAAGATAGAGTGCACACAA 58.549 39.130 21.04 3.31 36.76 3.33
189 190 4.071961 ACACAAAGATAGAGTGCACACA 57.928 40.909 21.04 3.31 36.76 3.72
190 191 4.776743 CAACACAAAGATAGAGTGCACAC 58.223 43.478 21.04 13.64 36.76 3.82
191 192 3.250762 GCAACACAAAGATAGAGTGCACA 59.749 43.478 21.04 0.00 36.76 4.57
192 193 3.250762 TGCAACACAAAGATAGAGTGCAC 59.749 43.478 9.40 9.40 36.76 4.57
193 194 3.475575 TGCAACACAAAGATAGAGTGCA 58.524 40.909 0.00 0.00 36.76 4.57
194 195 4.154737 TCATGCAACACAAAGATAGAGTGC 59.845 41.667 0.00 0.00 36.76 4.40
195 196 5.673068 GCTCATGCAACACAAAGATAGAGTG 60.673 44.000 0.00 0.00 39.41 3.51
196 197 4.394300 GCTCATGCAACACAAAGATAGAGT 59.606 41.667 0.00 0.00 39.41 3.24
197 198 4.634883 AGCTCATGCAACACAAAGATAGAG 59.365 41.667 0.00 0.00 42.74 2.43
198 199 4.582869 AGCTCATGCAACACAAAGATAGA 58.417 39.130 0.00 0.00 42.74 1.98
199 200 4.959596 AGCTCATGCAACACAAAGATAG 57.040 40.909 0.00 0.00 42.74 2.08
200 201 5.463286 CAAAGCTCATGCAACACAAAGATA 58.537 37.500 0.00 0.00 42.74 1.98
201 202 4.304110 CAAAGCTCATGCAACACAAAGAT 58.696 39.130 0.00 0.00 42.74 2.40
202 203 3.491276 CCAAAGCTCATGCAACACAAAGA 60.491 43.478 0.00 0.00 42.74 2.52
203 204 2.798283 CCAAAGCTCATGCAACACAAAG 59.202 45.455 0.00 0.00 42.74 2.77
204 205 2.823984 CCAAAGCTCATGCAACACAAA 58.176 42.857 0.00 0.00 42.74 2.83
205 206 1.538634 GCCAAAGCTCATGCAACACAA 60.539 47.619 0.00 0.00 42.74 3.33
206 207 0.032403 GCCAAAGCTCATGCAACACA 59.968 50.000 0.00 0.00 42.74 3.72
207 208 0.032403 TGCCAAAGCTCATGCAACAC 59.968 50.000 0.00 0.00 42.74 3.32
208 209 0.970640 ATGCCAAAGCTCATGCAACA 59.029 45.000 7.90 0.79 42.74 3.33
209 210 1.067425 TCATGCCAAAGCTCATGCAAC 60.067 47.619 7.98 0.00 42.74 4.17
210 211 1.258676 TCATGCCAAAGCTCATGCAA 58.741 45.000 7.98 0.00 42.74 4.08
211 212 1.136110 CATCATGCCAAAGCTCATGCA 59.864 47.619 7.98 7.25 42.74 3.96
212 213 1.538204 CCATCATGCCAAAGCTCATGC 60.538 52.381 7.98 1.87 39.76 4.06
213 214 1.538204 GCCATCATGCCAAAGCTCATG 60.538 52.381 6.76 6.76 40.92 3.07
214 215 0.750850 GCCATCATGCCAAAGCTCAT 59.249 50.000 0.00 0.00 40.80 2.90
215 216 0.612453 TGCCATCATGCCAAAGCTCA 60.612 50.000 0.00 0.00 40.80 4.26
216 217 0.533491 TTGCCATCATGCCAAAGCTC 59.467 50.000 0.00 0.00 40.80 4.09
217 218 1.138266 GATTGCCATCATGCCAAAGCT 59.862 47.619 0.00 0.00 40.80 3.74
218 219 1.134640 TGATTGCCATCATGCCAAAGC 60.135 47.619 0.00 0.00 34.22 3.51
219 220 2.971660 TGATTGCCATCATGCCAAAG 57.028 45.000 0.00 0.00 34.22 2.77
220 221 3.536570 CATTGATTGCCATCATGCCAAA 58.463 40.909 0.64 0.00 39.28 3.28
221 222 2.743510 GCATTGATTGCCATCATGCCAA 60.744 45.455 17.09 0.00 46.15 4.52
222 223 1.202592 GCATTGATTGCCATCATGCCA 60.203 47.619 17.09 0.00 46.15 4.92
223 224 1.508632 GCATTGATTGCCATCATGCC 58.491 50.000 17.09 2.00 46.15 4.40
245 246 5.067805 ACAACAAGGTCTGAATCTTTCAACC 59.932 40.000 10.81 10.81 39.58 3.77
246 247 6.136541 ACAACAAGGTCTGAATCTTTCAAC 57.863 37.500 0.00 0.00 39.58 3.18
250 251 6.064060 TGATGACAACAAGGTCTGAATCTTT 58.936 36.000 0.00 0.00 38.61 2.52
260 261 7.335422 GTCAGATAAAGATGATGACAACAAGGT 59.665 37.037 0.00 0.00 39.97 3.50
267 268 8.477256 TGTATGTGTCAGATAAAGATGATGACA 58.523 33.333 2.39 2.39 45.80 3.58
268 269 8.877808 TGTATGTGTCAGATAAAGATGATGAC 57.122 34.615 0.00 0.00 40.49 3.06
298 299 8.378172 TCAAGAAAACCATCGATTATACATCC 57.622 34.615 0.00 0.00 0.00 3.51
301 302 8.956533 TCATCAAGAAAACCATCGATTATACA 57.043 30.769 0.00 0.00 0.00 2.29
310 311 7.031975 GGTTCATCTTCATCAAGAAAACCATC 58.968 38.462 16.99 0.00 46.27 3.51
358 359 1.800805 ATGAAGAGCTCACCAACACG 58.199 50.000 17.77 0.00 36.69 4.49
363 364 2.886523 CAACCAAATGAAGAGCTCACCA 59.113 45.455 17.77 13.30 36.69 4.17
400 401 8.924303 ACACCTAGTCATAGAAGCACATATTTA 58.076 33.333 0.00 0.00 0.00 1.40
408 409 5.016831 TGAGAACACCTAGTCATAGAAGCA 58.983 41.667 0.00 0.00 0.00 3.91
422 423 8.784043 AGTTGTAGATTAAATTGTGAGAACACC 58.216 33.333 0.00 0.00 45.40 4.16
473 479 7.439056 GGACCCATTATGAACTGCAATAATTTG 59.561 37.037 0.00 0.00 35.85 2.32
476 482 6.135454 TGGACCCATTATGAACTGCAATAAT 58.865 36.000 0.00 0.00 0.00 1.28
482 488 3.763897 AGTTTGGACCCATTATGAACTGC 59.236 43.478 0.00 0.00 0.00 4.40
485 491 4.947388 TGCTAGTTTGGACCCATTATGAAC 59.053 41.667 0.00 0.00 0.00 3.18
493 499 2.298729 GCAAAATGCTAGTTTGGACCCA 59.701 45.455 9.81 0.00 40.96 4.51
502 510 1.904287 TTGGTCGGCAAAATGCTAGT 58.096 45.000 2.00 0.00 44.28 2.57
505 513 1.137872 TGTTTTGGTCGGCAAAATGCT 59.862 42.857 2.00 0.00 44.28 3.79
512 520 1.982660 TTATGGTGTTTTGGTCGGCA 58.017 45.000 0.00 0.00 0.00 5.69
609 617 4.404394 TCCGCTCTACCATTTACTGAATGA 59.596 41.667 0.56 0.00 46.59 2.57
613 621 3.767673 AGTTCCGCTCTACCATTTACTGA 59.232 43.478 0.00 0.00 0.00 3.41
615 623 3.767673 TGAGTTCCGCTCTACCATTTACT 59.232 43.478 0.00 0.00 44.41 2.24
616 624 4.119442 TGAGTTCCGCTCTACCATTTAC 57.881 45.455 0.00 0.00 44.41 2.01
617 625 4.442893 CCATGAGTTCCGCTCTACCATTTA 60.443 45.833 0.00 0.00 44.41 1.40
646 654 7.606073 TCAACTTGATTTGACGATGAAGGAATA 59.394 33.333 0.00 0.00 30.29 1.75
654 662 4.556135 GCACATCAACTTGATTTGACGATG 59.444 41.667 18.26 3.40 36.85 3.84
679 687 2.889988 CGGCACCATTCGCATCGA 60.890 61.111 0.00 0.00 0.00 3.59
681 689 1.893808 ATCCGGCACCATTCGCATC 60.894 57.895 0.00 0.00 0.00 3.91
694 702 1.472878 ACATACGATCGATCCATCCGG 59.527 52.381 24.34 6.98 0.00 5.14
715 723 6.928979 TTAGATGACTACAGAGTGAGTAGC 57.071 41.667 0.00 0.00 42.04 3.58
720 728 4.700692 AGCGTTTAGATGACTACAGAGTGA 59.299 41.667 0.00 0.00 35.45 3.41
721 729 4.987832 AGCGTTTAGATGACTACAGAGTG 58.012 43.478 0.00 0.00 35.45 3.51
722 730 4.944930 AGAGCGTTTAGATGACTACAGAGT 59.055 41.667 0.00 0.00 39.20 3.24
723 731 5.493133 AGAGCGTTTAGATGACTACAGAG 57.507 43.478 0.00 0.00 0.00 3.35
724 732 5.899120 AAGAGCGTTTAGATGACTACAGA 57.101 39.130 0.00 0.00 0.00 3.41
725 733 9.900710 AATATAAGAGCGTTTAGATGACTACAG 57.099 33.333 0.00 0.00 0.00 2.74
738 746 9.099454 CCTTCTGTAAAGAAATATAAGAGCGTT 57.901 33.333 0.00 0.00 0.00 4.84
739 747 7.711339 CCCTTCTGTAAAGAAATATAAGAGCGT 59.289 37.037 0.00 0.00 0.00 5.07
740 748 7.711339 ACCCTTCTGTAAAGAAATATAAGAGCG 59.289 37.037 0.00 0.00 0.00 5.03
747 755 9.807921 TTTCTTCACCCTTCTGTAAAGAAATAT 57.192 29.630 0.00 0.00 37.64 1.28
749 757 8.533569 TTTTCTTCACCCTTCTGTAAAGAAAT 57.466 30.769 8.41 0.00 40.44 2.17
751 759 7.948034 TTTTTCTTCACCCTTCTGTAAAGAA 57.052 32.000 0.00 0.00 32.54 2.52
790 836 8.450578 CCATCATGGTAGTACAAAACATGTAT 57.549 34.615 19.75 12.34 38.58 2.29
791 837 7.857734 CCATCATGGTAGTACAAAACATGTA 57.142 36.000 19.75 11.09 39.76 2.29
807 853 0.177836 TCCGCACTACACCATCATGG 59.822 55.000 0.54 0.54 45.02 3.66
808 854 1.935873 CTTCCGCACTACACCATCATG 59.064 52.381 0.00 0.00 0.00 3.07
818 1103 1.825474 CCTCTCTTTCCTTCCGCACTA 59.175 52.381 0.00 0.00 0.00 2.74
900 1185 7.713073 TGGCGATTGTTTTCCTTCTTTATTTTT 59.287 29.630 0.00 0.00 0.00 1.94
904 1189 5.975693 TGGCGATTGTTTTCCTTCTTTAT 57.024 34.783 0.00 0.00 0.00 1.40
912 1197 1.611491 TGGAGTTGGCGATTGTTTTCC 59.389 47.619 0.00 0.00 0.00 3.13
1092 1377 2.672651 TCGTCCACGCGGGTCTTA 60.673 61.111 12.47 0.00 39.60 2.10
1472 1765 1.759445 CGGGGTTGAGACTCTGATGAT 59.241 52.381 3.68 0.00 34.30 2.45
1481 1774 2.047179 GCAGTCCGGGGTTGAGAC 60.047 66.667 0.00 0.00 0.00 3.36
1506 1799 2.903357 CCATCCACAGTCCCTCCG 59.097 66.667 0.00 0.00 0.00 4.63
1509 1802 3.402681 CCGCCATCCACAGTCCCT 61.403 66.667 0.00 0.00 0.00 4.20
1527 1820 2.594013 TGCTGTGACGCATTGGCA 60.594 55.556 0.00 0.00 41.24 4.92
1531 1824 0.250038 AGTGACTGCTGTGACGCATT 60.250 50.000 7.62 0.00 39.52 3.56
1533 1826 1.592400 CAGTGACTGCTGTGACGCA 60.592 57.895 0.00 2.55 35.46 5.24
1549 1842 0.754217 CCCTGCATTCCATGACCCAG 60.754 60.000 0.00 0.00 0.00 4.45
1572 1865 0.984230 CAGCTACTTCTCCCCCACAA 59.016 55.000 0.00 0.00 0.00 3.33
1573 1866 0.116342 TCAGCTACTTCTCCCCCACA 59.884 55.000 0.00 0.00 0.00 4.17
1574 1867 1.139853 CATCAGCTACTTCTCCCCCAC 59.860 57.143 0.00 0.00 0.00 4.61
1575 1868 1.273838 ACATCAGCTACTTCTCCCCCA 60.274 52.381 0.00 0.00 0.00 4.96
1576 1869 1.501582 ACATCAGCTACTTCTCCCCC 58.498 55.000 0.00 0.00 0.00 5.40
1577 1870 2.911484 CAACATCAGCTACTTCTCCCC 58.089 52.381 0.00 0.00 0.00 4.81
1578 1871 2.093235 AGCAACATCAGCTACTTCTCCC 60.093 50.000 0.00 0.00 41.32 4.30
1579 1872 3.258971 AGCAACATCAGCTACTTCTCC 57.741 47.619 0.00 0.00 41.32 3.71
1580 1873 5.277250 GCATTAGCAACATCAGCTACTTCTC 60.277 44.000 0.00 0.00 43.71 2.87
1581 1874 4.574013 GCATTAGCAACATCAGCTACTTCT 59.426 41.667 0.00 0.00 43.71 2.85
1582 1875 4.842029 GCATTAGCAACATCAGCTACTTC 58.158 43.478 0.00 0.00 43.71 3.01
1583 1876 4.889832 GCATTAGCAACATCAGCTACTT 57.110 40.909 0.00 0.00 43.71 2.24
1681 1976 1.683938 CCACATGACTGATGGTGGCAT 60.684 52.381 0.00 0.00 36.23 4.40
1687 1982 5.126545 ACAATTTCATCCACATGACTGATGG 59.873 40.000 17.47 8.07 38.86 3.51
1717 2012 7.635648 AGTCAGTAAGGAAGTCATAGTAGTCT 58.364 38.462 0.00 0.00 0.00 3.24
1723 2018 9.307121 CACATTTAGTCAGTAAGGAAGTCATAG 57.693 37.037 0.00 0.00 0.00 2.23
1730 2025 9.841295 AGTTTTACACATTTAGTCAGTAAGGAA 57.159 29.630 0.00 0.00 0.00 3.36
1732 2027 9.052759 ACAGTTTTACACATTTAGTCAGTAAGG 57.947 33.333 0.00 0.00 0.00 2.69
1752 2049 5.460416 ACCCCCACTAACAATTTACAGTTT 58.540 37.500 0.00 0.00 0.00 2.66
1753 2050 5.069518 ACCCCCACTAACAATTTACAGTT 57.930 39.130 0.00 0.00 0.00 3.16
1754 2051 4.105057 TGACCCCCACTAACAATTTACAGT 59.895 41.667 0.00 0.00 0.00 3.55
1755 2052 4.658063 TGACCCCCACTAACAATTTACAG 58.342 43.478 0.00 0.00 0.00 2.74
1756 2053 4.726035 TGACCCCCACTAACAATTTACA 57.274 40.909 0.00 0.00 0.00 2.41
1757 2054 5.126545 GGATTGACCCCCACTAACAATTTAC 59.873 44.000 0.00 0.00 32.50 2.01
1758 2055 5.015817 AGGATTGACCCCCACTAACAATTTA 59.984 40.000 0.00 0.00 40.05 1.40
1759 2056 4.093743 GGATTGACCCCCACTAACAATTT 58.906 43.478 0.00 0.00 32.50 1.82
1760 2057 3.336694 AGGATTGACCCCCACTAACAATT 59.663 43.478 0.00 0.00 40.05 2.32
1761 2058 2.926329 AGGATTGACCCCCACTAACAAT 59.074 45.455 0.00 0.00 40.05 2.71
1762 2059 2.354328 AGGATTGACCCCCACTAACAA 58.646 47.619 0.00 0.00 40.05 2.83
1807 2104 3.244665 ACATCAGAATGCTTCAGTCCACA 60.245 43.478 0.00 0.00 36.26 4.17
1808 2105 3.126514 CACATCAGAATGCTTCAGTCCAC 59.873 47.826 0.00 0.00 36.26 4.02
1832 2129 2.136649 CGCTATGAAGGATCACGCG 58.863 57.895 3.53 3.53 45.78 6.01
1834 2131 0.855349 GCACGCTATGAAGGATCACG 59.145 55.000 0.00 0.00 38.69 4.35
1845 2142 8.925161 ACATTACAATAATTTTTGCACGCTAT 57.075 26.923 8.35 0.00 0.00 2.97
1863 2160 9.570468 TTAACTGTTATTGTGGGTTACATTACA 57.430 29.630 0.37 0.00 39.48 2.41
1867 2164 7.235804 ACCTTAACTGTTATTGTGGGTTACAT 58.764 34.615 0.37 0.00 39.48 2.29
1872 2169 5.303333 CCAAACCTTAACTGTTATTGTGGGT 59.697 40.000 0.37 3.24 0.00 4.51
1873 2170 5.303333 ACCAAACCTTAACTGTTATTGTGGG 59.697 40.000 13.80 13.63 28.57 4.61
1874 2171 6.039941 TCACCAAACCTTAACTGTTATTGTGG 59.960 38.462 0.37 6.55 0.00 4.17
1875 2172 7.033530 TCACCAAACCTTAACTGTTATTGTG 57.966 36.000 0.37 0.00 0.00 3.33
1876 2173 6.264518 CCTCACCAAACCTTAACTGTTATTGT 59.735 38.462 0.37 0.00 0.00 2.71
1877 2174 6.488683 TCCTCACCAAACCTTAACTGTTATTG 59.511 38.462 0.37 3.28 0.00 1.90
1878 2175 6.607019 TCCTCACCAAACCTTAACTGTTATT 58.393 36.000 0.37 0.00 0.00 1.40
1879 2176 6.183361 ACTCCTCACCAAACCTTAACTGTTAT 60.183 38.462 0.37 0.00 0.00 1.89
1880 2177 5.131475 ACTCCTCACCAAACCTTAACTGTTA 59.869 40.000 0.00 0.00 0.00 2.41
1881 2178 4.079958 ACTCCTCACCAAACCTTAACTGTT 60.080 41.667 0.00 0.00 0.00 3.16
1882 2179 3.458487 ACTCCTCACCAAACCTTAACTGT 59.542 43.478 0.00 0.00 0.00 3.55
1883 2180 4.086706 ACTCCTCACCAAACCTTAACTG 57.913 45.455 0.00 0.00 0.00 3.16
1884 2181 4.790718 AACTCCTCACCAAACCTTAACT 57.209 40.909 0.00 0.00 0.00 2.24
1885 2182 5.126545 ACAAAACTCCTCACCAAACCTTAAC 59.873 40.000 0.00 0.00 0.00 2.01
1901 2198 4.932200 AGTGTATCTGCTAGCACAAAACTC 59.068 41.667 14.93 10.34 34.59 3.01
1903 2200 5.409826 AGAAGTGTATCTGCTAGCACAAAAC 59.590 40.000 14.93 10.23 34.59 2.43
1926 2223 7.198306 AGTACCCGAACTTTTATGAACAAAG 57.802 36.000 0.00 0.00 37.29 2.77
1927 2224 7.571080 AAGTACCCGAACTTTTATGAACAAA 57.429 32.000 0.00 0.00 36.26 2.83
1928 2225 7.419204 CAAAGTACCCGAACTTTTATGAACAA 58.581 34.615 7.50 0.00 45.20 2.83
1929 2226 6.016943 CCAAAGTACCCGAACTTTTATGAACA 60.017 38.462 7.50 0.00 45.20 3.18
1930 2227 6.205270 TCCAAAGTACCCGAACTTTTATGAAC 59.795 38.462 7.50 0.00 45.20 3.18
1931 2228 6.205270 GTCCAAAGTACCCGAACTTTTATGAA 59.795 38.462 7.50 0.00 45.20 2.57
1932 2229 5.702209 GTCCAAAGTACCCGAACTTTTATGA 59.298 40.000 7.50 3.97 45.20 2.15
1933 2230 5.470777 TGTCCAAAGTACCCGAACTTTTATG 59.529 40.000 7.50 0.41 45.20 1.90
1934 2231 5.623169 TGTCCAAAGTACCCGAACTTTTAT 58.377 37.500 7.50 0.00 45.20 1.40
1935 2232 5.033589 TGTCCAAAGTACCCGAACTTTTA 57.966 39.130 7.50 0.00 45.20 1.52
1936 2233 3.888583 TGTCCAAAGTACCCGAACTTTT 58.111 40.909 7.50 0.00 45.20 2.27
1938 2235 3.564053 TTGTCCAAAGTACCCGAACTT 57.436 42.857 0.00 0.00 41.46 2.66
1939 2236 3.473625 CTTTGTCCAAAGTACCCGAACT 58.526 45.455 10.86 0.00 42.02 3.01
1940 2237 3.891056 CTTTGTCCAAAGTACCCGAAC 57.109 47.619 10.86 0.00 42.02 3.95
1950 2247 3.321682 CCAAATCTCCTGCTTTGTCCAAA 59.678 43.478 0.00 0.00 31.83 3.28
1951 2248 2.892852 CCAAATCTCCTGCTTTGTCCAA 59.107 45.455 0.00 0.00 31.83 3.53
1952 2249 2.158475 ACCAAATCTCCTGCTTTGTCCA 60.158 45.455 0.00 0.00 31.83 4.02
1953 2250 2.229784 CACCAAATCTCCTGCTTTGTCC 59.770 50.000 0.00 0.00 31.83 4.02
1954 2251 2.887152 ACACCAAATCTCCTGCTTTGTC 59.113 45.455 0.00 0.00 31.83 3.18
1955 2252 2.949447 ACACCAAATCTCCTGCTTTGT 58.051 42.857 0.00 0.00 31.83 2.83
1956 2253 4.326504 AAACACCAAATCTCCTGCTTTG 57.673 40.909 0.00 0.00 33.20 2.77
1957 2254 5.357742 AAAAACACCAAATCTCCTGCTTT 57.642 34.783 0.00 0.00 0.00 3.51
1958 2255 6.670695 ATAAAAACACCAAATCTCCTGCTT 57.329 33.333 0.00 0.00 0.00 3.91
1959 2256 6.670695 AATAAAAACACCAAATCTCCTGCT 57.329 33.333 0.00 0.00 0.00 4.24
1960 2257 8.825667 TTTAATAAAAACACCAAATCTCCTGC 57.174 30.769 0.00 0.00 0.00 4.85
2038 2343 3.002348 GGTTTATCGCATGTACTCCAAGC 59.998 47.826 0.00 0.00 34.46 4.01
2083 2388 4.279671 AGGGAGACTGCTATCGAAACATAG 59.720 45.833 0.00 0.00 0.00 2.23
2093 2398 3.840666 TCAACAAAGAGGGAGACTGCTAT 59.159 43.478 0.00 0.00 0.00 2.97
2104 2409 6.927294 AAGTAGTTCAAGTCAACAAAGAGG 57.073 37.500 0.00 0.00 0.00 3.69
2117 2422 9.613428 CCAATAACAGGATCATAAGTAGTTCAA 57.387 33.333 0.00 0.00 0.00 2.69
2120 2425 8.548877 ACACCAATAACAGGATCATAAGTAGTT 58.451 33.333 0.00 0.00 0.00 2.24
2161 2466 4.873259 GCACTTGGCCTTTTCTAACAAAAA 59.127 37.500 3.32 0.00 36.11 1.94
2162 2467 4.161377 AGCACTTGGCCTTTTCTAACAAAA 59.839 37.500 3.32 0.00 46.50 2.44
2169 2474 1.780503 ACAAGCACTTGGCCTTTTCT 58.219 45.000 14.51 0.00 46.50 2.52
2175 2480 2.266070 TGCATACAAGCACTTGGCC 58.734 52.632 14.51 0.00 46.50 5.36
2240 2545 7.012607 TCTCATATGAAGATGTGGGACTATGA 58.987 38.462 6.90 0.00 25.74 2.15
2270 2575 0.755327 AGCGCCCCAGTCTTTTTGTT 60.755 50.000 2.29 0.00 0.00 2.83
2339 2644 8.018520 TGGTTAGAAAAATAATGCTGTAACACG 58.981 33.333 0.00 0.00 0.00 4.49
2381 2687 7.915397 GCCAATGAATAAACTGTACTATTGTGG 59.085 37.037 0.00 6.21 0.00 4.17
2423 2729 4.860022 AGGAAGGTCATTATTGGTTCCTG 58.140 43.478 12.33 0.00 41.77 3.86
2424 2730 6.217693 ACTTAGGAAGGTCATTATTGGTTCCT 59.782 38.462 15.26 15.26 44.68 3.36
2434 2744 7.037586 TCACCATCTAAACTTAGGAAGGTCATT 60.038 37.037 0.00 0.00 31.82 2.57
2461 2771 2.241160 ACACAATCATCAAGCAAGGCA 58.759 42.857 0.00 0.00 0.00 4.75
2478 2788 6.144080 CGGATCTTATTTCAACGGAGATACAC 59.856 42.308 0.00 0.00 29.87 2.90
2480 2790 6.214399 ACGGATCTTATTTCAACGGAGATAC 58.786 40.000 0.00 0.00 0.00 2.24
2495 2805 4.250464 CCTTTGCACAACTACGGATCTTA 58.750 43.478 0.00 0.00 0.00 2.10
2501 2811 3.112580 CAAAACCTTTGCACAACTACGG 58.887 45.455 0.00 0.00 0.00 4.02
2619 2931 1.133598 AGCATCATCAAACGTGCATGG 59.866 47.619 11.36 0.00 39.94 3.66
2621 2933 3.581024 AAAGCATCATCAAACGTGCAT 57.419 38.095 0.00 0.00 39.94 3.96
2624 2936 4.289342 TCACAAAAGCATCATCAAACGTG 58.711 39.130 0.00 0.00 0.00 4.49
2634 2946 3.863142 AAGCAGGATCACAAAAGCATC 57.137 42.857 0.00 0.00 0.00 3.91
2646 2958 6.381801 CACAAAGAATAACGAAAAGCAGGAT 58.618 36.000 0.00 0.00 0.00 3.24
2716 3036 4.628074 ACTGACAAGTAACAACGCATACT 58.372 39.130 0.00 0.00 33.79 2.12
2743 3064 4.271696 TCACCAGACATACCAAGAGTTG 57.728 45.455 0.00 0.00 0.00 3.16
2754 3075 4.783227 AGGTAAGGTACAATCACCAGACAT 59.217 41.667 0.00 0.00 41.40 3.06
2818 3146 5.804639 AGTACATCTGCAATCAAAGGTACA 58.195 37.500 0.00 0.00 33.99 2.90
2921 3264 4.397417 AGATCTAGTGGCAAATTGAACTGC 59.603 41.667 10.70 0.00 37.86 4.40
2931 3274 2.857186 TGTTGCAGATCTAGTGGCAA 57.143 45.000 12.73 12.73 43.32 4.52
3039 3382 4.803329 AATATTGAGAAGGTGATGGGCT 57.197 40.909 0.00 0.00 0.00 5.19
3044 3387 4.218312 GCCCCAAATATTGAGAAGGTGAT 58.782 43.478 0.00 0.00 0.00 3.06
3077 3420 0.741221 GTCGACCACAATCCCAGAGC 60.741 60.000 3.51 0.00 0.00 4.09
3149 3492 6.939132 AGACCATCATCATTCAAAGCTAAG 57.061 37.500 0.00 0.00 0.00 2.18
3160 3503 2.441001 GTCCCCAGAAGACCATCATCAT 59.559 50.000 0.00 0.00 0.00 2.45
3184 3527 1.545428 GCATCACAGGTCTTGTTCCCA 60.545 52.381 0.00 0.00 38.16 4.37
3186 3529 0.798776 CGCATCACAGGTCTTGTTCC 59.201 55.000 0.00 0.00 38.16 3.62
3187 3530 0.798776 CCGCATCACAGGTCTTGTTC 59.201 55.000 0.00 0.00 38.16 3.18
3188 3531 1.237285 GCCGCATCACAGGTCTTGTT 61.237 55.000 0.00 0.00 38.16 2.83
3189 3532 1.672356 GCCGCATCACAGGTCTTGT 60.672 57.895 0.00 0.00 41.94 3.16
3190 3533 2.401766 GGCCGCATCACAGGTCTTG 61.402 63.158 0.00 0.00 0.00 3.02
3191 3534 2.045926 GGCCGCATCACAGGTCTT 60.046 61.111 0.00 0.00 0.00 3.01
3192 3535 2.809861 CTTGGCCGCATCACAGGTCT 62.810 60.000 0.00 0.00 32.36 3.85
3193 3536 2.359850 TTGGCCGCATCACAGGTC 60.360 61.111 0.00 0.00 0.00 3.85
3194 3537 2.360350 CTTGGCCGCATCACAGGT 60.360 61.111 0.00 0.00 0.00 4.00
3239 3582 4.567959 ACTTTTGCACAAAGAGCATCAAAC 59.432 37.500 20.80 0.00 42.33 2.93
3295 3638 2.300956 TTTTGATGTTGCAGCCCCTA 57.699 45.000 0.00 0.00 0.00 3.53
3308 3651 4.283978 TGTGCATTCCAAGGTGATTTTGAT 59.716 37.500 0.00 0.00 0.00 2.57
3365 3708 8.970020 AGAATTTGCTAATATCAATGTTCACCA 58.030 29.630 0.00 0.00 0.00 4.17
3409 3752 2.892374 AGTTCTGCAAAAACAACAGGC 58.108 42.857 12.65 0.00 32.19 4.85
3493 3836 2.476320 GCCGCTCTCAAATGCCCTC 61.476 63.158 0.00 0.00 0.00 4.30
3667 4010 7.398024 ACAAGGCTAGAGTGTTAGAATCATTT 58.602 34.615 0.00 0.00 0.00 2.32
3823 4166 1.363744 CCTTTGTCTTGCTCCTAGCG 58.636 55.000 0.00 0.00 46.26 4.26
3846 4189 1.879380 TCGCATTGGTGTCCTTTTGAG 59.121 47.619 0.00 0.00 0.00 3.02
3937 4280 0.186630 TGGCCTGATTGGGGATGATG 59.813 55.000 3.32 0.00 36.00 3.07
3938 4281 0.481567 CTGGCCTGATTGGGGATGAT 59.518 55.000 3.32 0.00 36.00 2.45
3939 4282 0.920763 ACTGGCCTGATTGGGGATGA 60.921 55.000 17.64 0.00 36.00 2.92
3977 4320 2.827642 GATGCTGGGAGCCACTGC 60.828 66.667 0.00 0.40 41.51 4.40
4018 4361 2.486918 TGTGATGCATCTTCATAGGCG 58.513 47.619 26.32 0.00 0.00 5.52
4039 4382 2.630098 CAGATATGACATCGGGTCCACT 59.370 50.000 0.00 0.00 46.38 4.00
4105 4448 2.178912 AGAAATCGCCTTTTCCGTCA 57.821 45.000 3.14 0.00 36.47 4.35
4145 4488 0.745845 GGCATGTCGCATCTTCAGGT 60.746 55.000 0.00 0.00 45.17 4.00
4159 4502 4.824166 GCGCACGAGCTTGGCATG 62.824 66.667 0.30 0.00 39.10 4.06
4252 4595 8.768501 ATCTATCCAAGATGTCTACACTTACA 57.231 34.615 0.00 0.00 43.62 2.41
4467 4811 2.813226 GATGCGTGTGGGCTTGGGTA 62.813 60.000 0.00 0.00 0.00 3.69
4677 5022 7.025365 ACCGAAAAGTTTAACAAAGACAAGAC 58.975 34.615 0.00 0.00 0.00 3.01
4911 5256 1.799933 CCCTTGGAGTCTAGCCAGAT 58.200 55.000 0.00 0.00 36.64 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.