Multiple sequence alignment - TraesCS1B01G349100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G349100 chr1B 100.000 3314 0 0 1 3314 579779808 579776495 0.000000e+00 6120.0
1 TraesCS1B01G349100 chr1B 84.942 943 117 16 871 1791 577829369 577828430 0.000000e+00 931.0
2 TraesCS1B01G349100 chr1B 87.832 452 55 0 1337 1788 579001928 579001477 6.300000e-147 531.0
3 TraesCS1B01G349100 chr1B 85.588 451 56 4 875 1323 579002457 579002014 6.480000e-127 464.0
4 TraesCS1B01G349100 chr1B 87.397 365 43 2 1968 2329 579001355 579000991 1.840000e-112 416.0
5 TraesCS1B01G349100 chr1B 85.281 231 25 7 2684 2913 579004865 579004643 2.570000e-56 230.0
6 TraesCS1B01G349100 chr1B 87.500 144 13 3 3125 3268 579004410 579004272 9.520000e-36 161.0
7 TraesCS1B01G349100 chr1B 94.340 53 3 0 3259 3311 303848140 303848192 7.620000e-12 82.4
8 TraesCS1B01G349100 chr1D 94.370 3286 116 28 22 3268 427597840 427594585 0.000000e+00 4979.0
9 TraesCS1B01G349100 chr1D 86.712 888 103 5 909 1788 427372369 427371489 0.000000e+00 972.0
10 TraesCS1B01G349100 chr1D 86.183 883 109 11 927 1801 427332271 427331394 0.000000e+00 942.0
11 TraesCS1B01G349100 chr1D 85.038 929 126 8 871 1791 427319598 427318675 0.000000e+00 933.0
12 TraesCS1B01G349100 chr1D 84.910 444 62 5 1886 2328 427331348 427330909 8.440000e-121 444.0
13 TraesCS1B01G349100 chr1D 87.432 366 42 3 1968 2329 427371349 427370984 5.110000e-113 418.0
14 TraesCS1B01G349100 chr1D 86.508 252 24 5 2684 2935 427382433 427382192 5.450000e-68 268.0
15 TraesCS1B01G349100 chr1D 86.508 252 24 5 2684 2935 427387084 427386843 5.450000e-68 268.0
16 TraesCS1B01G349100 chr1D 86.111 252 25 5 2684 2935 427377774 427377533 2.540000e-66 263.0
17 TraesCS1B01G349100 chr1D 86.111 252 25 5 2684 2935 427380101 427379860 2.540000e-66 263.0
18 TraesCS1B01G349100 chr1D 85.771 253 25 6 2684 2935 427389410 427389168 1.180000e-64 257.0
19 TraesCS1B01G349100 chr1D 85.375 253 26 6 2684 2935 427384758 427384516 5.490000e-63 252.0
20 TraesCS1B01G349100 chr1D 94.771 153 7 1 2914 3066 427377473 427377322 1.540000e-58 237.0
21 TraesCS1B01G349100 chr1D 94.118 153 8 1 2914 3066 427384456 427384305 7.150000e-57 231.0
22 TraesCS1B01G349100 chr1D 94.118 153 8 1 2914 3066 427400284 427400133 7.150000e-57 231.0
23 TraesCS1B01G349100 chr1D 93.464 153 9 1 2914 3066 427379800 427379649 3.330000e-55 226.0
24 TraesCS1B01G349100 chr1D 93.464 153 9 1 2914 3066 427382132 427381981 3.330000e-55 226.0
25 TraesCS1B01G349100 chr1D 93.464 153 9 1 2914 3066 427386783 427386632 3.330000e-55 226.0
26 TraesCS1B01G349100 chr1D 88.889 144 11 3 3125 3268 427400110 427399972 4.400000e-39 172.0
27 TraesCS1B01G349100 chr1D 88.194 144 12 3 3125 3268 427377299 427377161 2.050000e-37 167.0
28 TraesCS1B01G349100 chr1D 88.194 144 12 3 3125 3268 427379627 427379489 2.050000e-37 167.0
29 TraesCS1B01G349100 chr1D 88.194 144 12 3 3125 3268 427381957 427381819 2.050000e-37 167.0
30 TraesCS1B01G349100 chr1D 87.500 144 13 3 3125 3268 427388934 427388796 9.520000e-36 161.0
31 TraesCS1B01G349100 chr1D 86.806 144 14 3 3125 3268 427386610 427386472 4.430000e-34 156.0
32 TraesCS1B01G349100 chr1D 86.111 144 15 3 3125 3268 427384283 427384145 2.060000e-32 150.0
33 TraesCS1B01G349100 chr1A 94.710 983 35 12 1484 2454 522882321 522881344 0.000000e+00 1511.0
34 TraesCS1B01G349100 chr1A 86.768 922 107 5 875 1788 522536005 522535091 0.000000e+00 1013.0
35 TraesCS1B01G349100 chr1A 86.942 873 99 9 929 1791 522510885 522510018 0.000000e+00 966.0
36 TraesCS1B01G349100 chr1A 90.521 749 40 11 2453 3184 522880876 522880142 0.000000e+00 961.0
37 TraesCS1B01G349100 chr1A 95.973 596 17 4 871 1459 522882914 522882319 0.000000e+00 961.0
38 TraesCS1B01G349100 chr1A 88.344 652 42 15 1 642 522883565 522882938 0.000000e+00 752.0
39 TraesCS1B01G349100 chr1A 87.947 531 41 12 2547 3066 522538490 522537972 3.660000e-169 604.0
40 TraesCS1B01G349100 chr1A 84.459 444 60 5 1888 2328 522515433 522514996 2.360000e-116 429.0
41 TraesCS1B01G349100 chr1A 87.432 366 42 2 1968 2329 522534951 522534586 5.110000e-113 418.0
42 TraesCS1B01G349100 chr1A 97.917 48 1 0 3264 3311 52053983 52053936 2.120000e-12 84.2
43 TraesCS1B01G349100 chr1A 97.917 48 1 0 3267 3314 294514462 294514509 2.120000e-12 84.2
44 TraesCS1B01G349100 chr5D 81.020 1902 261 54 465 2334 523315247 523313414 0.000000e+00 1421.0
45 TraesCS1B01G349100 chr5D 80.967 1902 264 51 465 2334 523188059 523186224 0.000000e+00 1417.0
46 TraesCS1B01G349100 chr6D 97.917 48 1 0 3267 3314 303203849 303203896 2.120000e-12 84.2
47 TraesCS1B01G349100 chr2A 90.625 64 4 2 3252 3314 753531441 753531379 2.120000e-12 84.2
48 TraesCS1B01G349100 chr2A 94.444 54 2 1 3260 3312 206114851 206114904 7.620000e-12 82.4
49 TraesCS1B01G349100 chr3B 92.857 56 4 0 3258 3313 267878941 267878886 7.620000e-12 82.4
50 TraesCS1B01G349100 chr2B 92.982 57 2 2 3260 3314 529341894 529341950 7.620000e-12 82.4
51 TraesCS1B01G349100 chr2B 95.745 47 2 0 3268 3314 646951413 646951367 3.550000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G349100 chr1B 579776495 579779808 3313 True 6120.000000 6120 100.000000 1 3314 1 chr1B.!!$R2 3313
1 TraesCS1B01G349100 chr1B 577828430 577829369 939 True 931.000000 931 84.942000 871 1791 1 chr1B.!!$R1 920
2 TraesCS1B01G349100 chr1B 579000991 579004865 3874 True 360.400000 531 86.719600 875 3268 5 chr1B.!!$R3 2393
3 TraesCS1B01G349100 chr1D 427594585 427597840 3255 True 4979.000000 4979 94.370000 22 3268 1 chr1D.!!$R2 3246
4 TraesCS1B01G349100 chr1D 427318675 427319598 923 True 933.000000 933 85.038000 871 1791 1 chr1D.!!$R1 920
5 TraesCS1B01G349100 chr1D 427370984 427372369 1385 True 695.000000 972 87.072000 909 2329 2 chr1D.!!$R4 1420
6 TraesCS1B01G349100 chr1D 427330909 427332271 1362 True 693.000000 942 85.546500 927 2328 2 chr1D.!!$R3 1401
7 TraesCS1B01G349100 chr1D 427377161 427389410 12249 True 216.764706 268 88.862588 2684 3268 17 chr1D.!!$R5 584
8 TraesCS1B01G349100 chr1A 522880142 522883565 3423 True 1046.250000 1511 92.387000 1 3184 4 chr1A.!!$R5 3183
9 TraesCS1B01G349100 chr1A 522510018 522510885 867 True 966.000000 966 86.942000 929 1791 1 chr1A.!!$R2 862
10 TraesCS1B01G349100 chr1A 522534586 522538490 3904 True 678.333333 1013 87.382333 875 3066 3 chr1A.!!$R4 2191
11 TraesCS1B01G349100 chr5D 523313414 523315247 1833 True 1421.000000 1421 81.020000 465 2334 1 chr5D.!!$R2 1869
12 TraesCS1B01G349100 chr5D 523186224 523188059 1835 True 1417.000000 1417 80.967000 465 2334 1 chr5D.!!$R1 1869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 401 0.178984 TGGACCACAGGTAGACACGA 60.179 55.0 0.0 0.0 35.25 4.35 F
393 402 0.243095 GGACCACAGGTAGACACGAC 59.757 60.0 0.0 0.0 35.25 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 4009 3.053095 ACAATCTCATTTGGCCCAGATCT 60.053 43.478 0.00 0.00 0.00 2.75 R
2355 4236 5.740569 CCGTTGTCTCATGAGCAAAATATTG 59.259 40.000 24.56 14.49 39.65 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 173 3.006217 GGCTCTGAATTCAGCAACCTTTT 59.994 43.478 27.45 0.00 43.46 2.27
173 174 4.502087 GGCTCTGAATTCAGCAACCTTTTT 60.502 41.667 27.45 0.00 43.46 1.94
199 204 3.129287 CACCATGTGCCTTAATTCTCACC 59.871 47.826 0.00 0.00 0.00 4.02
210 215 6.151817 GCCTTAATTCTCACCATTTCTCTGTT 59.848 38.462 0.00 0.00 0.00 3.16
287 296 4.452455 CCTCTATTTGGCATGTACGGAATC 59.548 45.833 0.00 0.00 0.00 2.52
329 338 5.139435 TCTGTGTCAGATTCCAACACTAG 57.861 43.478 15.94 12.49 42.89 2.57
390 399 6.223852 CAATATATGGACCACAGGTAGACAC 58.776 44.000 0.00 0.00 35.25 3.67
392 401 0.178984 TGGACCACAGGTAGACACGA 60.179 55.000 0.00 0.00 35.25 4.35
393 402 0.243095 GGACCACAGGTAGACACGAC 59.757 60.000 0.00 0.00 35.25 4.34
394 403 0.956633 GACCACAGGTAGACACGACA 59.043 55.000 0.00 0.00 35.25 4.35
421 430 4.756642 TGATGCCACAACTAGAACAGAAAG 59.243 41.667 0.00 0.00 0.00 2.62
453 462 5.679638 GCATTGATCTTACACATTGTTCCCC 60.680 44.000 0.00 0.00 0.00 4.81
455 464 5.191727 TGATCTTACACATTGTTCCCCAT 57.808 39.130 0.00 0.00 0.00 4.00
456 465 5.192927 TGATCTTACACATTGTTCCCCATC 58.807 41.667 0.00 0.00 0.00 3.51
457 466 3.605634 TCTTACACATTGTTCCCCATCG 58.394 45.455 0.00 0.00 0.00 3.84
458 467 3.262151 TCTTACACATTGTTCCCCATCGA 59.738 43.478 0.00 0.00 0.00 3.59
459 468 2.113860 ACACATTGTTCCCCATCGAG 57.886 50.000 0.00 0.00 0.00 4.04
489 498 2.869233 TGTTTTCTGCCAAGTGCTTC 57.131 45.000 0.00 0.00 42.00 3.86
1707 3573 2.429971 TGCAGAAGCTCCTACTGATGAG 59.570 50.000 12.18 0.00 42.74 2.90
1745 3611 6.494893 TTCTGGTGATATGTTTAAGCACAC 57.505 37.500 0.00 0.00 0.00 3.82
1925 3798 3.915437 ACCAATTGAACCACTAAAGCG 57.085 42.857 7.12 0.00 0.00 4.68
2128 4009 8.278639 AGGTGATAATTGTTGATATGGTGGTTA 58.721 33.333 0.00 0.00 0.00 2.85
2355 4236 4.020485 ACCATCTATAGCCGGGTGTTTATC 60.020 45.833 18.40 0.00 0.00 1.75
2437 4320 8.893219 TCTTACTCTTGTTATTCAGCATATGG 57.107 34.615 4.56 0.00 0.00 2.74
2451 4334 3.774766 AGCATATGGTCTACAGTTCCACA 59.225 43.478 0.40 0.00 33.91 4.17
2574 4939 0.165295 GCTCGTAAACCTTTCACCGC 59.835 55.000 0.00 0.00 0.00 5.68
2597 4962 4.397348 AGGCGAAATCGTTTGGCT 57.603 50.000 13.70 6.79 46.61 4.75
2767 12104 1.974265 TTTTGCCGAATCAGACACCA 58.026 45.000 0.00 0.00 0.00 4.17
2768 12105 1.974265 TTTGCCGAATCAGACACCAA 58.026 45.000 0.00 0.00 0.00 3.67
2850 12188 1.348064 TTCCGACACTCCTGTCCATT 58.652 50.000 0.00 0.00 43.64 3.16
2865 12203 0.179089 CCATTGCTGAGAGTAGCGCT 60.179 55.000 17.26 17.26 46.61 5.92
2983 12401 4.540099 TCAATCTAACTCATTGTCCCCCTT 59.460 41.667 0.00 0.00 33.61 3.95
3148 17217 7.815840 TCTGAGAGTAGGATCTGAATGTAAG 57.184 40.000 0.00 0.00 0.00 2.34
3160 17229 8.239998 GGATCTGAATGTAAGTTTGAAAGAAGG 58.760 37.037 0.00 0.00 0.00 3.46
3280 17350 8.496707 TGTTTTAAAATATACTCCCTCCGTTC 57.503 34.615 3.52 0.00 0.00 3.95
3281 17351 7.278424 TGTTTTAAAATATACTCCCTCCGTTCG 59.722 37.037 3.52 0.00 0.00 3.95
3282 17352 4.332428 AAAATATACTCCCTCCGTTCGG 57.668 45.455 4.74 4.74 0.00 4.30
3283 17353 2.965671 ATATACTCCCTCCGTTCGGA 57.034 50.000 13.34 13.34 0.00 4.55
3284 17354 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
3285 17355 1.856629 ATACTCCCTCCGTTCGGAAA 58.143 50.000 14.79 3.49 33.41 3.13
3286 17356 1.856629 TACTCCCTCCGTTCGGAAAT 58.143 50.000 14.79 2.39 33.41 2.17
3287 17357 1.856629 ACTCCCTCCGTTCGGAAATA 58.143 50.000 14.79 2.82 33.41 1.40
3288 17358 1.479730 ACTCCCTCCGTTCGGAAATAC 59.520 52.381 14.79 0.00 33.41 1.89
3289 17359 1.755380 CTCCCTCCGTTCGGAAATACT 59.245 52.381 14.79 0.00 33.41 2.12
3290 17360 2.167900 CTCCCTCCGTTCGGAAATACTT 59.832 50.000 14.79 0.00 33.41 2.24
3291 17361 2.093869 TCCCTCCGTTCGGAAATACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3292 17362 2.354403 CCCTCCGTTCGGAAATACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3293 17363 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3294 17364 3.581755 CTCCGTTCGGAAATACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
3295 17365 3.319755 TCCGTTCGGAAATACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
3296 17366 2.414138 CCGTTCGGAAATACTTGTCACC 59.586 50.000 5.19 0.00 0.00 4.02
3297 17367 3.061322 CGTTCGGAAATACTTGTCACCA 58.939 45.455 0.00 0.00 0.00 4.17
3298 17368 3.495377 CGTTCGGAAATACTTGTCACCAA 59.505 43.478 0.00 0.00 0.00 3.67
3299 17369 4.024725 CGTTCGGAAATACTTGTCACCAAA 60.025 41.667 0.00 0.00 0.00 3.28
3300 17370 5.504337 CGTTCGGAAATACTTGTCACCAAAA 60.504 40.000 0.00 0.00 0.00 2.44
3301 17371 6.443792 GTTCGGAAATACTTGTCACCAAAAT 58.556 36.000 0.00 0.00 0.00 1.82
3302 17372 6.007936 TCGGAAATACTTGTCACCAAAATG 57.992 37.500 0.00 0.00 0.00 2.32
3303 17373 5.765677 TCGGAAATACTTGTCACCAAAATGA 59.234 36.000 0.00 0.00 0.00 2.57
3304 17374 6.263392 TCGGAAATACTTGTCACCAAAATGAA 59.737 34.615 0.00 0.00 0.00 2.57
3305 17375 7.040062 TCGGAAATACTTGTCACCAAAATGAAT 60.040 33.333 0.00 0.00 0.00 2.57
3306 17376 8.240682 CGGAAATACTTGTCACCAAAATGAATA 58.759 33.333 0.00 0.00 0.00 1.75
3307 17377 9.921637 GGAAATACTTGTCACCAAAATGAATAA 57.078 29.630 0.00 0.00 0.00 1.40
3311 17381 9.927668 ATACTTGTCACCAAAATGAATAAAAGG 57.072 29.630 0.00 0.00 0.00 3.11
3312 17382 7.216494 ACTTGTCACCAAAATGAATAAAAGGG 58.784 34.615 0.00 0.00 0.00 3.95
3313 17383 6.107901 TGTCACCAAAATGAATAAAAGGGG 57.892 37.500 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 173 2.666272 TTAAGGCACATGGTGGTGAA 57.334 45.000 0.00 0.00 41.32 3.18
173 174 2.897271 ATTAAGGCACATGGTGGTGA 57.103 45.000 0.00 0.00 41.32 4.02
261 270 3.431626 CCGTACATGCCAAATAGAGGACA 60.432 47.826 0.00 0.00 0.00 4.02
262 271 3.131396 CCGTACATGCCAAATAGAGGAC 58.869 50.000 0.00 0.00 0.00 3.85
287 296 0.250553 TTTGGGTGTCGGTTAGGCAG 60.251 55.000 0.00 0.00 33.59 4.85
329 338 5.585500 TGTTACAGTCGCAATTTGTAGAC 57.415 39.130 14.86 14.86 0.00 2.59
390 399 1.302431 TTGTGGCATCACCCTGTCG 60.302 57.895 0.00 0.00 42.98 4.35
392 401 1.003580 CTAGTTGTGGCATCACCCTGT 59.996 52.381 0.00 0.00 42.98 4.00
393 402 1.278985 TCTAGTTGTGGCATCACCCTG 59.721 52.381 0.00 0.00 42.98 4.45
394 403 1.656587 TCTAGTTGTGGCATCACCCT 58.343 50.000 0.00 0.00 42.98 4.34
421 430 4.937620 TGTGTAAGATCAATGCAGAACTCC 59.062 41.667 0.00 0.00 0.00 3.85
434 443 4.273480 CGATGGGGAACAATGTGTAAGATC 59.727 45.833 0.00 0.00 0.00 2.75
456 465 3.842428 CAGAAAACATTGTTCGATGCTCG 59.158 43.478 1.83 0.00 42.10 5.03
457 466 3.605486 GCAGAAAACATTGTTCGATGCTC 59.395 43.478 18.22 5.27 0.00 4.26
458 467 3.568538 GCAGAAAACATTGTTCGATGCT 58.431 40.909 18.22 1.38 0.00 3.79
459 468 2.663119 GGCAGAAAACATTGTTCGATGC 59.337 45.455 17.66 17.66 0.00 3.91
516 530 9.244799 GGTTGTAAATTTTCTGTCCTTTGTAAG 57.755 33.333 0.00 0.00 0.00 2.34
533 547 7.552330 GGCCACAATTAATGAATGGTTGTAAAT 59.448 33.333 0.00 0.00 32.27 1.40
551 567 2.316108 GGGGATATTTTCGGCCACAAT 58.684 47.619 2.24 0.00 0.00 2.71
642 663 2.503765 TCCACTGTGTTTTCTCCACTCA 59.496 45.455 7.08 0.00 33.92 3.41
648 669 1.604278 GTGGCTCCACTGTGTTTTCTC 59.396 52.381 11.61 0.00 43.12 2.87
1707 3573 3.922240 CACCAGAAATAAACAGCACATGC 59.078 43.478 0.00 0.00 42.49 4.06
1745 3611 4.864334 GGGCATCCGCTGGTGGAG 62.864 72.222 8.85 2.98 42.45 3.86
1812 3681 5.874831 TGATATTACAAAACGTGGATGTGC 58.125 37.500 10.39 0.00 0.00 4.57
1996 3872 6.389830 AACAGACTGAGATATACAGCAGAG 57.610 41.667 10.08 0.00 38.74 3.35
2128 4009 3.053095 ACAATCTCATTTGGCCCAGATCT 60.053 43.478 0.00 0.00 0.00 2.75
2355 4236 5.740569 CCGTTGTCTCATGAGCAAAATATTG 59.259 40.000 24.56 14.49 39.65 1.90
2437 4320 1.070134 TGCTGGTGTGGAACTGTAGAC 59.930 52.381 0.00 0.00 38.04 2.59
2451 4334 5.954150 AGACATGAAAGGATTATTTGCTGGT 59.046 36.000 0.00 0.00 0.00 4.00
2514 4866 0.690762 GACTAAGGGTGTGGCCAAGA 59.309 55.000 7.24 0.00 39.65 3.02
2574 4939 2.906161 CCAAACGATTTCGCCTAAAACG 59.094 45.455 0.00 7.14 45.68 3.60
2597 4962 2.569853 TGGGAAGCGAACCAAAGAGATA 59.430 45.455 0.00 0.00 32.89 1.98
2722 5089 6.731292 ATGTACAAGCTGATGTATCCAGTA 57.269 37.500 0.00 0.00 38.03 2.74
2737 12073 7.429340 GTCTGATTCGGCAAAAATATGTACAAG 59.571 37.037 0.00 0.00 0.00 3.16
2767 12104 8.543774 ACATGTCAAATAGAGGATAGTGACTTT 58.456 33.333 0.00 0.00 35.29 2.66
2768 12105 8.083828 ACATGTCAAATAGAGGATAGTGACTT 57.916 34.615 0.00 0.00 35.29 3.01
2801 12139 2.852495 ATTCGGTGTCGGCTTCGCAT 62.852 55.000 0.00 0.00 36.95 4.73
2850 12188 1.446792 GCAAGCGCTACTCTCAGCA 60.447 57.895 12.05 0.00 41.88 4.41
2997 12415 6.792846 ATAAAACATTTTAAGCGCTTGGCAGA 60.793 34.615 32.23 9.42 38.04 4.26
3105 17174 9.429359 CTCTCAGAAGTGTTTGTTGTATTAGAT 57.571 33.333 0.00 0.00 0.00 1.98
3148 17217 2.306847 TGAGTGGCCCTTCTTTCAAAC 58.693 47.619 0.00 0.00 0.00 2.93
3160 17229 1.967319 TTCACTTGAGTTGAGTGGCC 58.033 50.000 0.00 0.00 43.61 5.36
3268 17338 1.479730 GTATTTCCGAACGGAGGGAGT 59.520 52.381 15.34 1.96 46.06 3.85
3269 17339 1.755380 AGTATTTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3270 17340 1.856629 AGTATTTCCGAACGGAGGGA 58.143 50.000 15.34 7.17 46.06 4.20
3271 17341 2.277084 CAAGTATTTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3272 17342 2.928116 GACAAGTATTTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3273 17343 3.367025 GTGACAAGTATTTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
3274 17344 3.319755 GTGACAAGTATTTCCGAACGGA 58.680 45.455 12.04 12.04 43.52 4.69
3275 17345 2.414138 GGTGACAAGTATTTCCGAACGG 59.586 50.000 6.94 6.94 0.00 4.44
3276 17346 3.061322 TGGTGACAAGTATTTCCGAACG 58.939 45.455 0.00 0.00 37.44 3.95
3290 17360 6.107901 CCCCTTTTATTCATTTTGGTGACA 57.892 37.500 0.00 0.00 39.83 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.