Multiple sequence alignment - TraesCS1B01G348400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G348400 chr1B 100.000 3357 0 0 1 3357 577830226 577826870 0.000000e+00 6200.0
1 TraesCS1B01G348400 chr1B 86.073 876 120 2 976 1849 578045417 578044542 0.000000e+00 941.0
2 TraesCS1B01G348400 chr1B 84.942 943 117 16 858 1797 579778938 579778018 0.000000e+00 931.0
3 TraesCS1B01G348400 chr1B 90.333 600 33 13 838 1432 577918434 577917855 0.000000e+00 763.0
4 TraesCS1B01G348400 chr1B 87.531 401 47 2 1980 2379 578044480 578044082 8.490000e-126 460.0
5 TraesCS1B01G348400 chr1B 83.333 366 36 14 106 458 577920431 577920078 6.990000e-82 315.0
6 TraesCS1B01G348400 chr1B 91.579 95 8 0 577 671 325286993 325287087 7.560000e-27 132.0
7 TraesCS1B01G348400 chr1B 100.000 34 0 0 1943 1976 578044543 578044510 2.800000e-06 63.9
8 TraesCS1B01G348400 chr1D 94.247 1043 41 11 803 1844 427319653 427318629 0.000000e+00 1576.0
9 TraesCS1B01G348400 chr1D 86.765 884 108 8 970 1845 427372315 427371433 0.000000e+00 976.0
10 TraesCS1B01G348400 chr1D 85.912 866 120 2 984 1848 427332215 427331351 0.000000e+00 922.0
11 TraesCS1B01G348400 chr1D 91.258 469 34 6 4 471 427320361 427319899 1.700000e-177 632.0
12 TraesCS1B01G348400 chr1D 86.313 453 50 7 2003 2452 427318552 427318109 1.810000e-132 483.0
13 TraesCS1B01G348400 chr1D 82.900 462 65 10 2003 2455 427371358 427370902 1.450000e-108 403.0
14 TraesCS1B01G348400 chr1D 85.984 371 48 3 2004 2372 427595901 427595533 8.730000e-106 394.0
15 TraesCS1B01G348400 chr1D 92.946 241 12 5 536 773 427319886 427319648 2.480000e-91 346.0
16 TraesCS1B01G348400 chr1D 79.049 568 68 30 2752 3284 427315134 427314583 3.210000e-90 342.0
17 TraesCS1B01G348400 chr1D 95.918 98 4 0 3187 3284 427313429 427313332 3.470000e-35 159.0
18 TraesCS1B01G348400 chr1D 81.461 178 20 7 2450 2617 427318078 427317904 2.100000e-27 134.0
19 TraesCS1B01G348400 chr1D 97.826 46 0 1 3278 3322 427312101 427312056 9.990000e-11 78.7
20 TraesCS1B01G348400 chr1A 90.727 1197 65 23 676 1844 522511150 522509972 0.000000e+00 1554.0
21 TraesCS1B01G348400 chr1A 86.652 884 109 8 970 1845 522535917 522535035 0.000000e+00 970.0
22 TraesCS1B01G348400 chr1A 87.259 518 58 5 51 567 522511674 522511164 4.830000e-163 584.0
23 TraesCS1B01G348400 chr1A 87.778 450 48 4 2003 2451 522509895 522509452 1.380000e-143 520.0
24 TraesCS1B01G348400 chr1A 87.376 404 41 5 1980 2380 522515384 522514988 3.950000e-124 455.0
25 TraesCS1B01G348400 chr1A 82.900 462 65 9 2003 2455 522534960 522534504 1.450000e-108 403.0
26 TraesCS1B01G348400 chr1A 84.647 241 22 7 2450 2678 522509420 522509183 3.370000e-55 226.0
27 TraesCS1B01G348400 chr1A 77.876 226 25 14 2749 2961 522509175 522508962 2.120000e-22 117.0
28 TraesCS1B01G348400 chr5D 83.233 996 143 15 811 1798 523187714 523186735 0.000000e+00 893.0
29 TraesCS1B01G348400 chr5D 82.796 1023 149 18 811 1823 523314903 523313898 0.000000e+00 889.0
30 TraesCS1B01G348400 chr5D 90.000 100 8 2 572 671 510630273 510630370 9.780000e-26 128.0
31 TraesCS1B01G348400 chr6B 97.959 98 2 0 1848 1945 717149032 717148935 1.600000e-38 171.0
32 TraesCS1B01G348400 chr6B 95.192 104 5 0 1842 1945 424080605 424080502 7.450000e-37 165.0
33 TraesCS1B01G348400 chr6B 95.192 104 5 0 1842 1945 424303318 424303215 7.450000e-37 165.0
34 TraesCS1B01G348400 chr6B 91.228 114 8 2 1842 1954 617617868 617617756 1.610000e-33 154.0
35 TraesCS1B01G348400 chr2B 94.393 107 5 1 1846 1951 664215167 664215273 2.680000e-36 163.0
36 TraesCS1B01G348400 chr2B 93.578 109 6 1 1845 1953 457144390 457144497 9.640000e-36 161.0
37 TraesCS1B01G348400 chr7B 93.458 107 7 0 1839 1945 359467628 359467522 3.470000e-35 159.0
38 TraesCS1B01G348400 chr5B 94.286 105 5 1 1848 1952 465239239 465239136 3.470000e-35 159.0
39 TraesCS1B01G348400 chr3B 92.105 114 7 1 1837 1948 560117408 560117295 3.470000e-35 159.0
40 TraesCS1B01G348400 chr7D 95.699 93 2 2 576 667 74411908 74411999 7.500000e-32 148.0
41 TraesCS1B01G348400 chr7A 93.069 101 5 2 576 675 78432091 78432190 2.700000e-31 147.0
42 TraesCS1B01G348400 chr4B 91.429 105 7 2 572 675 138286439 138286542 3.490000e-30 143.0
43 TraesCS1B01G348400 chr6A 91.667 96 8 0 576 671 445574867 445574962 2.100000e-27 134.0
44 TraesCS1B01G348400 chr2D 90.000 100 9 1 572 671 11184540 11184638 9.780000e-26 128.0
45 TraesCS1B01G348400 chr6D 90.000 100 7 3 572 671 420621428 420621332 3.520000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G348400 chr1B 577826870 577830226 3356 True 6200.0000 6200 100.000000 1 3357 1 chr1B.!!$R1 3356
1 TraesCS1B01G348400 chr1B 579778018 579778938 920 True 931.0000 931 84.942000 858 1797 1 chr1B.!!$R2 939
2 TraesCS1B01G348400 chr1B 577917855 577920431 2576 True 539.0000 763 86.833000 106 1432 2 chr1B.!!$R3 1326
3 TraesCS1B01G348400 chr1B 578044082 578045417 1335 True 488.3000 941 91.201333 976 2379 3 chr1B.!!$R4 1403
4 TraesCS1B01G348400 chr1D 427331351 427332215 864 True 922.0000 922 85.912000 984 1848 1 chr1D.!!$R1 864
5 TraesCS1B01G348400 chr1D 427370902 427372315 1413 True 689.5000 976 84.832500 970 2455 2 chr1D.!!$R4 1485
6 TraesCS1B01G348400 chr1D 427312056 427320361 8305 True 468.8375 1576 89.877250 4 3322 8 chr1D.!!$R3 3318
7 TraesCS1B01G348400 chr1A 522534504 522535917 1413 True 686.5000 970 84.776000 970 2455 2 chr1A.!!$R2 1485
8 TraesCS1B01G348400 chr1A 522508962 522515384 6422 True 576.0000 1554 85.943833 51 2961 6 chr1A.!!$R1 2910
9 TraesCS1B01G348400 chr5D 523186735 523187714 979 True 893.0000 893 83.233000 811 1798 1 chr5D.!!$R1 987
10 TraesCS1B01G348400 chr5D 523313898 523314903 1005 True 889.0000 889 82.796000 811 1823 1 chr5D.!!$R2 1012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 3773 0.036164 TGTGTAGGCTGTTTCGGCAT 59.964 50.0 0.0 0.0 37.51 4.4 F
612 5819 0.852777 CATCGCCTTGTATCGTTCGG 59.147 55.0 0.0 0.0 0.00 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 6467 1.269958 TGCCTGATACAGTGAGCACT 58.730 50.0 0.0 0.00 43.61 4.4 R
2555 7883 0.938008 GCGCCTTAACTGTAGATGGC 59.062 55.0 0.0 8.62 37.24 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.611292 GAGATGATTCAGAACAAGGCGG 59.389 50.000 0.00 0.00 0.00 6.13
32 33 2.815647 GAACAAGGCGGGAGAGCG 60.816 66.667 0.00 0.00 38.18 5.03
50 51 1.838913 CGTCAGCTTGTTTTGGGTTG 58.161 50.000 0.00 0.00 0.00 3.77
52 53 0.463620 TCAGCTTGTTTTGGGTTGCC 59.536 50.000 0.00 0.00 0.00 4.52
53 54 0.177604 CAGCTTGTTTTGGGTTGCCA 59.822 50.000 0.00 0.00 0.00 4.92
57 3718 2.744494 GCTTGTTTTGGGTTGCCATCAA 60.744 45.455 0.00 0.00 0.00 2.57
77 3738 1.226262 GTGGTTGTCAGTGGGGTGT 59.774 57.895 0.00 0.00 0.00 4.16
112 3773 0.036164 TGTGTAGGCTGTTTCGGCAT 59.964 50.000 0.00 0.00 37.51 4.40
141 3802 6.270064 GTTGCTGCCTCTTTGTTTAGTTTTA 58.730 36.000 0.00 0.00 0.00 1.52
146 3807 7.214467 TGCCTCTTTGTTTAGTTTTATCAGG 57.786 36.000 0.00 0.00 0.00 3.86
156 3817 9.444600 TGTTTAGTTTTATCAGGTCTTGTATCC 57.555 33.333 0.00 0.00 0.00 2.59
165 3826 3.110705 AGGTCTTGTATCCTGATGCTGT 58.889 45.455 0.00 0.00 32.29 4.40
166 3827 3.521126 AGGTCTTGTATCCTGATGCTGTT 59.479 43.478 0.00 0.00 32.29 3.16
167 3828 3.624861 GGTCTTGTATCCTGATGCTGTTG 59.375 47.826 0.00 0.00 0.00 3.33
256 3919 3.650409 GACAGCGTGATGTCCTAGG 57.350 57.895 0.82 0.82 43.12 3.02
261 3924 2.887783 CAGCGTGATGTCCTAGGTAGAT 59.112 50.000 9.08 0.00 0.00 1.98
365 4032 6.032717 GCTTGTGGAATTGCTCTATTTTCTC 58.967 40.000 0.00 0.00 0.00 2.87
387 4054 3.617263 CGAGGTGTGTAATTTGGTAGCTC 59.383 47.826 0.00 0.00 0.00 4.09
413 4080 5.685520 TGCCCCAAGGAATAAAATTTACC 57.314 39.130 0.00 0.00 33.47 2.85
482 5689 6.089820 GCAGAACATGTACAACCATTTCATTG 59.910 38.462 0.00 0.00 0.00 2.82
495 5702 2.611225 TTCATTGGGTGTGGCAAAAC 57.389 45.000 0.00 0.00 0.00 2.43
585 5792 6.650427 AGAAGGTAAGGCTTTTGTAAAAGG 57.350 37.500 4.45 0.00 44.24 3.11
588 5795 3.576982 GGTAAGGCTTTTGTAAAAGGGCT 59.423 43.478 4.45 10.21 44.24 5.19
612 5819 0.852777 CATCGCCTTGTATCGTTCGG 59.147 55.000 0.00 0.00 0.00 4.30
614 5821 2.522638 CGCCTTGTATCGTTCGGCC 61.523 63.158 0.00 0.00 37.47 6.13
636 5843 3.302170 CGTGTACTTTGTTTGGTTGTTGC 59.698 43.478 0.00 0.00 0.00 4.17
768 5985 4.307032 AAACTGATAGCCACCATTCACT 57.693 40.909 0.00 0.00 0.00 3.41
770 5987 3.614092 ACTGATAGCCACCATTCACTTG 58.386 45.455 0.00 0.00 0.00 3.16
771 5988 3.264193 ACTGATAGCCACCATTCACTTGA 59.736 43.478 0.00 0.00 0.00 3.02
772 5989 4.080129 ACTGATAGCCACCATTCACTTGAT 60.080 41.667 0.00 0.00 0.00 2.57
839 6058 8.924511 AGTTCATCTCAAATACCTTCAGAAAA 57.075 30.769 0.00 0.00 0.00 2.29
840 6059 9.525826 AGTTCATCTCAAATACCTTCAGAAAAT 57.474 29.630 0.00 0.00 0.00 1.82
841 6060 9.565213 GTTCATCTCAAATACCTTCAGAAAATG 57.435 33.333 0.00 0.00 0.00 2.32
842 6061 7.765307 TCATCTCAAATACCTTCAGAAAATGC 58.235 34.615 0.00 0.00 0.00 3.56
843 6062 7.613022 TCATCTCAAATACCTTCAGAAAATGCT 59.387 33.333 0.00 0.00 0.00 3.79
846 6065 4.725790 AATACCTTCAGAAAATGCTGGC 57.274 40.909 0.00 0.00 36.55 4.85
849 6068 2.298163 ACCTTCAGAAAATGCTGGCAAG 59.702 45.455 0.00 0.00 36.55 4.01
850 6069 2.298163 CCTTCAGAAAATGCTGGCAAGT 59.702 45.455 0.00 0.00 36.55 3.16
853 6072 5.509501 CCTTCAGAAAATGCTGGCAAGTAAA 60.510 40.000 0.00 0.00 36.55 2.01
960 6198 1.675007 TGTGTCCAATCCCACCCATA 58.325 50.000 0.00 0.00 0.00 2.74
961 6199 1.996291 TGTGTCCAATCCCACCCATAA 59.004 47.619 0.00 0.00 0.00 1.90
962 6200 2.291282 TGTGTCCAATCCCACCCATAAC 60.291 50.000 0.00 0.00 0.00 1.89
963 6201 1.996291 TGTCCAATCCCACCCATAACA 59.004 47.619 0.00 0.00 0.00 2.41
964 6202 2.025416 TGTCCAATCCCACCCATAACAG 60.025 50.000 0.00 0.00 0.00 3.16
965 6203 2.025321 GTCCAATCCCACCCATAACAGT 60.025 50.000 0.00 0.00 0.00 3.55
966 6204 2.025416 TCCAATCCCACCCATAACAGTG 60.025 50.000 0.00 0.00 0.00 3.66
967 6205 2.291540 CCAATCCCACCCATAACAGTGT 60.292 50.000 0.00 0.00 31.88 3.55
968 6206 2.754552 CAATCCCACCCATAACAGTGTG 59.245 50.000 0.00 0.00 31.88 3.82
1016 6256 5.128499 TCAACAAAATGTCACCCACTCAAAT 59.872 36.000 0.00 0.00 0.00 2.32
1193 6433 1.742146 CGAAGATCGGGCTCCATCA 59.258 57.895 0.00 0.00 36.00 3.07
1227 6467 1.226575 CTTACGACGGCTCATGCGA 60.227 57.895 0.00 0.00 40.82 5.10
1284 6527 1.227823 CACCACGGCAGACAAGGAA 60.228 57.895 0.00 0.00 0.00 3.36
1383 6626 4.275689 TCGTTGATGCTTGATTCAACTGTT 59.724 37.500 12.38 0.00 46.04 3.16
1388 6631 5.300034 TGATGCTTGATTCAACTGTTCTTGT 59.700 36.000 0.00 0.00 0.00 3.16
1671 6914 0.984109 CGCAAATGAAATGCACGGTC 59.016 50.000 0.00 0.00 44.01 4.79
1712 6955 1.819288 TGAAGAAGCTCCTACTGACGG 59.181 52.381 0.00 0.00 0.00 4.79
1811 7057 7.178573 CCTTTAGATTTTCCTTCTTCCCTTCT 58.821 38.462 0.00 0.00 0.00 2.85
1821 7072 4.020218 CCTTCTTCCCTTCTCACACATACA 60.020 45.833 0.00 0.00 0.00 2.29
1834 7085 9.549078 TTCTCACACATACACAGTTTACAATAA 57.451 29.630 0.00 0.00 0.00 1.40
1847 7098 9.243105 ACAGTTTACAATAAGATGCCATAAAGT 57.757 29.630 0.00 0.00 0.00 2.66
1852 7103 9.555727 TTACAATAAGATGCCATAAAGTACTCC 57.444 33.333 0.00 0.00 0.00 3.85
1853 7104 6.998673 ACAATAAGATGCCATAAAGTACTCCC 59.001 38.462 0.00 0.00 0.00 4.30
1854 7105 7.147302 ACAATAAGATGCCATAAAGTACTCCCT 60.147 37.037 0.00 0.00 0.00 4.20
1855 7106 4.965200 AGATGCCATAAAGTACTCCCTC 57.035 45.455 0.00 0.00 0.00 4.30
1856 7107 3.648545 AGATGCCATAAAGTACTCCCTCC 59.351 47.826 0.00 0.00 0.00 4.30
1857 7108 1.760613 TGCCATAAAGTACTCCCTCCG 59.239 52.381 0.00 0.00 0.00 4.63
1858 7109 1.761198 GCCATAAAGTACTCCCTCCGT 59.239 52.381 0.00 0.00 0.00 4.69
1859 7110 2.223994 GCCATAAAGTACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
1860 7111 2.364647 CCATAAAGTACTCCCTCCGTCC 59.635 54.545 0.00 0.00 0.00 4.79
1861 7112 2.149973 TAAAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
1862 7113 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
1863 7114 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
1864 7115 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
1865 7116 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1866 7117 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1867 7118 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1868 7119 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1869 7120 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1870 7121 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1871 7122 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1872 7123 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1873 7124 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1874 7125 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1875 7126 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
1876 7127 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
1877 7128 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
1878 7129 4.517453 CCGTCCCAAAATAAGTGTCTTGAA 59.483 41.667 0.00 0.00 0.00 2.69
1879 7130 5.449304 CGTCCCAAAATAAGTGTCTTGAAC 58.551 41.667 0.00 0.00 0.00 3.18
1880 7131 5.238650 CGTCCCAAAATAAGTGTCTTGAACT 59.761 40.000 0.00 0.00 0.00 3.01
1881 7132 6.238648 CGTCCCAAAATAAGTGTCTTGAACTT 60.239 38.462 0.00 0.00 40.82 2.66
1882 7133 7.041644 CGTCCCAAAATAAGTGTCTTGAACTTA 60.042 37.037 0.00 0.00 42.63 2.24
1883 7134 8.290325 GTCCCAAAATAAGTGTCTTGAACTTAG 58.710 37.037 2.85 0.00 41.95 2.18
1884 7135 7.996644 TCCCAAAATAAGTGTCTTGAACTTAGT 59.003 33.333 2.85 0.00 41.95 2.24
1885 7136 9.280174 CCCAAAATAAGTGTCTTGAACTTAGTA 57.720 33.333 2.85 0.00 41.95 1.82
1894 7145 9.174166 AGTGTCTTGAACTTAGTACAAATTTGT 57.826 29.630 25.99 25.99 44.86 2.83
1919 7170 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
1920 7171 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
1921 7172 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
1922 7173 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
1923 7174 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
1924 7175 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
1925 7176 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
1926 7177 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
1927 7178 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
1930 7181 9.391006 AGTACAAAGTTGAGACACTTATTTTGA 57.609 29.630 0.00 0.00 35.87 2.69
1931 7182 9.651718 GTACAAAGTTGAGACACTTATTTTGAG 57.348 33.333 0.00 0.00 35.87 3.02
1932 7183 8.506168 ACAAAGTTGAGACACTTATTTTGAGA 57.494 30.769 0.00 0.00 35.87 3.27
1933 7184 9.125026 ACAAAGTTGAGACACTTATTTTGAGAT 57.875 29.630 0.00 0.00 35.87 2.75
1937 7188 9.868277 AGTTGAGACACTTATTTTGAGATAGAG 57.132 33.333 0.00 0.00 0.00 2.43
1938 7189 9.092876 GTTGAGACACTTATTTTGAGATAGAGG 57.907 37.037 0.00 0.00 0.00 3.69
1939 7190 7.786030 TGAGACACTTATTTTGAGATAGAGGG 58.214 38.462 0.00 0.00 0.00 4.30
1976 7227 3.181524 CGCTTGTAGGTACCAATTGAACG 60.182 47.826 15.94 5.73 0.00 3.95
1978 7229 4.092968 GCTTGTAGGTACCAATTGAACGAG 59.907 45.833 15.94 11.42 0.00 4.18
1994 7271 8.831715 ATTGAACGAGCTTTTTATGGAAAAAT 57.168 26.923 0.00 0.00 42.27 1.82
1999 7276 8.655651 ACGAGCTTTTTATGGAAAAATTCAAA 57.344 26.923 0.00 0.00 42.27 2.69
2001 7278 9.368921 CGAGCTTTTTATGGAAAAATTCAAAAC 57.631 29.630 0.00 0.00 42.27 2.43
2039 7322 9.747898 ATAGGGTCTAATTGTAACATTTTGTGA 57.252 29.630 0.00 0.00 0.00 3.58
2101 7384 5.741510 CGATGAAGACTGTGTCAAGATACTC 59.258 44.000 0.46 0.00 34.60 2.59
2190 7473 1.064463 TGGATCTGGGCCAAATGAGAC 60.064 52.381 8.04 0.00 31.13 3.36
2245 7528 5.415701 TCTGTTTATCATGTTTCTTGAGGGC 59.584 40.000 0.00 0.00 0.00 5.19
2272 7555 3.054802 AGCGAGAGGAATTTGAGTGGAAT 60.055 43.478 0.00 0.00 0.00 3.01
2287 7570 8.908786 TTGAGTGGAATAAGATATTCATGGAC 57.091 34.615 11.13 3.80 0.00 4.02
2312 7595 1.737793 GGTTCAGCGGGTACAAGATTG 59.262 52.381 0.00 0.00 0.00 2.67
2315 7598 3.965379 TCAGCGGGTACAAGATTGTAA 57.035 42.857 6.99 0.00 44.46 2.41
2326 7609 0.676782 AGATTGTAACGGTGCTGGGC 60.677 55.000 0.00 0.00 0.00 5.36
2350 7633 7.087639 GCGTTAGATCTGTTATTGAGCTCTAT 58.912 38.462 16.19 15.55 32.16 1.98
2375 7658 5.865552 CCTTGAACACTCCATGCAAAATTAG 59.134 40.000 0.00 0.00 0.00 1.73
2386 7669 6.667414 TCCATGCAAAATTAGGTGGAGTAAAT 59.333 34.615 0.00 0.00 32.38 1.40
2411 7696 4.963276 TTACATATTCACAAGGCAGCAC 57.037 40.909 0.00 0.00 0.00 4.40
2412 7697 2.794103 ACATATTCACAAGGCAGCACA 58.206 42.857 0.00 0.00 0.00 4.57
2417 7702 1.180907 TCACAAGGCAGCACAAACAA 58.819 45.000 0.00 0.00 0.00 2.83
2452 7770 2.237643 TGTTGTATGCATGTGGCTTGT 58.762 42.857 10.16 0.00 45.15 3.16
2471 7789 3.064207 TGTATTTTGCGAGGTGTGAGTC 58.936 45.455 0.00 0.00 0.00 3.36
2472 7790 1.523758 ATTTTGCGAGGTGTGAGTCC 58.476 50.000 0.00 0.00 0.00 3.85
2473 7791 0.534203 TTTTGCGAGGTGTGAGTCCC 60.534 55.000 0.00 0.00 0.00 4.46
2482 7800 0.468226 GTGTGAGTCCCTGTGACCAA 59.532 55.000 0.00 0.00 45.68 3.67
2484 7802 2.301870 GTGTGAGTCCCTGTGACCAATA 59.698 50.000 0.00 0.00 45.68 1.90
2497 7815 6.182507 TGTGACCAATAAGTTACCTCTGTT 57.817 37.500 0.00 0.00 0.00 3.16
2512 7830 5.423015 ACCTCTGTTACTGCAAGACATATG 58.577 41.667 0.00 0.00 37.43 1.78
2519 7837 6.367695 TGTTACTGCAAGACATATGTGTGTAC 59.632 38.462 14.43 3.28 39.09 2.90
2538 7864 1.305297 ATGGACTCTGCTCCGGTCA 60.305 57.895 0.00 0.00 32.22 4.02
2543 7869 0.247736 ACTCTGCTCCGGTCATGTTC 59.752 55.000 0.00 0.00 0.00 3.18
2555 7883 7.258022 TCCGGTCATGTTCATGTATAAATTG 57.742 36.000 0.00 0.00 0.00 2.32
2571 7899 9.337396 TGTATAAATTGCCATCTACAGTTAAGG 57.663 33.333 0.00 0.00 0.00 2.69
2572 7900 5.582689 AAATTGCCATCTACAGTTAAGGC 57.417 39.130 0.00 0.00 42.32 4.35
2573 7901 2.309528 TGCCATCTACAGTTAAGGCG 57.690 50.000 0.00 0.00 44.83 5.52
2574 7902 0.938008 GCCATCTACAGTTAAGGCGC 59.062 55.000 0.00 0.00 31.88 6.53
2582 7910 6.358118 TCTACAGTTAAGGCGCATATTTTG 57.642 37.500 10.83 2.97 0.00 2.44
2636 10662 7.276658 TGTTATTTCTGTTTCAGTGTCCACTA 58.723 34.615 0.00 0.00 40.20 2.74
2637 10663 7.936847 TGTTATTTCTGTTTCAGTGTCCACTAT 59.063 33.333 0.00 0.00 40.20 2.12
2645 10673 8.997621 TGTTTCAGTGTCCACTATCTTATTAC 57.002 34.615 0.00 0.00 40.20 1.89
2654 10682 6.804295 GTCCACTATCTTATTACTCAGCATCG 59.196 42.308 0.00 0.00 0.00 3.84
2661 10689 7.108841 TCTTATTACTCAGCATCGGTACTTT 57.891 36.000 0.00 0.00 0.00 2.66
2671 10699 3.517602 CATCGGTACTTTGGTGATTCGA 58.482 45.455 0.00 0.00 0.00 3.71
2678 10706 4.882671 ACTTTGGTGATTCGATGTATGC 57.117 40.909 0.00 0.00 0.00 3.14
2679 10707 4.260985 ACTTTGGTGATTCGATGTATGCA 58.739 39.130 0.00 0.00 0.00 3.96
2680 10708 4.883585 ACTTTGGTGATTCGATGTATGCAT 59.116 37.500 3.79 3.79 38.18 3.96
2681 10709 5.357878 ACTTTGGTGATTCGATGTATGCATT 59.642 36.000 3.54 0.00 35.07 3.56
2682 10710 6.542005 ACTTTGGTGATTCGATGTATGCATTA 59.458 34.615 3.54 0.00 35.07 1.90
2683 10711 6.934048 TTGGTGATTCGATGTATGCATTAA 57.066 33.333 3.54 0.00 35.07 1.40
2684 10712 7.509141 TTGGTGATTCGATGTATGCATTAAT 57.491 32.000 3.54 0.00 35.07 1.40
2685 10713 6.901265 TGGTGATTCGATGTATGCATTAATG 58.099 36.000 3.54 11.27 35.07 1.90
2698 10726 2.785477 GCATTAATGCGTGATCAAGTGC 59.215 45.455 23.77 9.36 44.67 4.40
2699 10727 3.365832 CATTAATGCGTGATCAAGTGCC 58.634 45.455 10.41 0.00 0.00 5.01
2700 10728 2.106477 TAATGCGTGATCAAGTGCCA 57.894 45.000 10.41 0.55 0.00 4.92
2701 10729 0.806868 AATGCGTGATCAAGTGCCAG 59.193 50.000 10.41 0.00 0.00 4.85
2702 10730 0.321919 ATGCGTGATCAAGTGCCAGT 60.322 50.000 10.41 0.00 0.00 4.00
2703 10731 0.534877 TGCGTGATCAAGTGCCAGTT 60.535 50.000 10.41 0.00 0.00 3.16
2704 10732 0.593128 GCGTGATCAAGTGCCAGTTT 59.407 50.000 10.41 0.00 0.00 2.66
2705 10733 1.001378 GCGTGATCAAGTGCCAGTTTT 60.001 47.619 10.41 0.00 0.00 2.43
2706 10734 2.225491 GCGTGATCAAGTGCCAGTTTTA 59.775 45.455 10.41 0.00 0.00 1.52
2707 10735 3.810373 CGTGATCAAGTGCCAGTTTTAC 58.190 45.455 0.00 0.00 0.00 2.01
2708 10736 3.498397 CGTGATCAAGTGCCAGTTTTACT 59.502 43.478 0.00 0.00 0.00 2.24
2709 10737 4.611355 CGTGATCAAGTGCCAGTTTTACTG 60.611 45.833 0.00 0.00 45.53 2.74
2710 10738 4.275936 GTGATCAAGTGCCAGTTTTACTGT 59.724 41.667 0.00 0.00 44.50 3.55
2711 10739 4.275689 TGATCAAGTGCCAGTTTTACTGTG 59.724 41.667 0.00 0.00 44.50 3.66
2712 10740 3.879998 TCAAGTGCCAGTTTTACTGTGA 58.120 40.909 6.13 0.64 44.50 3.58
2713 10741 4.265893 TCAAGTGCCAGTTTTACTGTGAA 58.734 39.130 6.13 0.00 44.50 3.18
2714 10742 4.095782 TCAAGTGCCAGTTTTACTGTGAAC 59.904 41.667 6.13 3.11 44.50 3.18
2715 10743 3.886123 AGTGCCAGTTTTACTGTGAACT 58.114 40.909 6.13 5.81 44.50 3.01
2716 10744 5.031066 AGTGCCAGTTTTACTGTGAACTA 57.969 39.130 9.92 0.00 44.50 2.24
2717 10745 5.621193 AGTGCCAGTTTTACTGTGAACTAT 58.379 37.500 9.92 0.00 44.50 2.12
2718 10746 5.470098 AGTGCCAGTTTTACTGTGAACTATG 59.530 40.000 9.92 6.96 44.50 2.23
2719 10747 4.215399 TGCCAGTTTTACTGTGAACTATGC 59.785 41.667 16.60 16.60 44.50 3.14
2720 10748 4.215399 GCCAGTTTTACTGTGAACTATGCA 59.785 41.667 17.56 0.00 44.50 3.96
2721 10749 5.106157 GCCAGTTTTACTGTGAACTATGCAT 60.106 40.000 3.79 3.79 44.50 3.96
2722 10750 6.093495 GCCAGTTTTACTGTGAACTATGCATA 59.907 38.462 6.20 6.20 44.50 3.14
2723 10751 7.677276 GCCAGTTTTACTGTGAACTATGCATAG 60.677 40.741 28.38 28.38 44.50 2.23
2724 10752 7.182761 CAGTTTTACTGTGAACTATGCATAGC 58.817 38.462 29.60 16.92 41.19 2.97
2725 10753 7.065085 CAGTTTTACTGTGAACTATGCATAGCT 59.935 37.037 29.60 20.39 41.19 3.32
2726 10754 7.278868 AGTTTTACTGTGAACTATGCATAGCTC 59.721 37.037 29.60 26.73 34.52 4.09
2727 10755 4.065321 ACTGTGAACTATGCATAGCTCC 57.935 45.455 29.60 20.58 33.68 4.70
2728 10756 3.452264 ACTGTGAACTATGCATAGCTCCA 59.548 43.478 29.60 23.17 33.68 3.86
2729 10757 4.102210 ACTGTGAACTATGCATAGCTCCAT 59.898 41.667 29.60 13.44 33.68 3.41
2730 10758 4.383173 TGTGAACTATGCATAGCTCCATG 58.617 43.478 29.60 9.21 33.68 3.66
2731 10759 4.141642 TGTGAACTATGCATAGCTCCATGT 60.142 41.667 29.60 9.83 33.68 3.21
2732 10760 4.212847 GTGAACTATGCATAGCTCCATGTG 59.787 45.833 29.60 7.82 33.68 3.21
2733 10761 3.413846 ACTATGCATAGCTCCATGTGG 57.586 47.619 29.60 7.12 33.68 4.17
2734 10762 2.707791 ACTATGCATAGCTCCATGTGGT 59.292 45.455 29.60 7.74 33.54 4.16
2735 10763 1.977056 ATGCATAGCTCCATGTGGTG 58.023 50.000 0.00 0.00 36.34 4.17
2740 10768 2.124570 GCTCCATGTGGTGCCGAT 60.125 61.111 13.65 0.00 46.01 4.18
2741 10769 1.750399 GCTCCATGTGGTGCCGATT 60.750 57.895 13.65 0.00 46.01 3.34
2742 10770 1.996786 GCTCCATGTGGTGCCGATTG 61.997 60.000 13.65 0.00 46.01 2.67
2743 10771 1.996786 CTCCATGTGGTGCCGATTGC 61.997 60.000 0.00 0.00 41.77 3.56
2777 10805 7.369803 TGTCTGATTGCTGACTAAAGAAATC 57.630 36.000 0.00 0.00 41.12 2.17
2779 10807 6.372659 GTCTGATTGCTGACTAAAGAAATCCA 59.627 38.462 3.09 0.00 40.33 3.41
2780 10808 7.066766 GTCTGATTGCTGACTAAAGAAATCCAT 59.933 37.037 3.09 0.00 40.33 3.41
2781 10809 8.267183 TCTGATTGCTGACTAAAGAAATCCATA 58.733 33.333 3.09 0.00 40.33 2.74
2782 10810 8.213518 TGATTGCTGACTAAAGAAATCCATAC 57.786 34.615 3.09 0.00 40.33 2.39
2784 10812 5.972935 TGCTGACTAAAGAAATCCATACGA 58.027 37.500 0.00 0.00 0.00 3.43
2786 10814 7.047891 TGCTGACTAAAGAAATCCATACGATT 58.952 34.615 0.00 0.00 43.34 3.34
2787 10815 7.224753 TGCTGACTAAAGAAATCCATACGATTC 59.775 37.037 0.00 0.00 40.47 2.52
2788 10816 7.224753 GCTGACTAAAGAAATCCATACGATTCA 59.775 37.037 0.00 0.00 40.47 2.57
2789 10817 9.265901 CTGACTAAAGAAATCCATACGATTCAT 57.734 33.333 0.00 0.00 40.47 2.57
2790 10818 9.045223 TGACTAAAGAAATCCATACGATTCATG 57.955 33.333 0.00 0.00 40.47 3.07
2791 10819 8.964476 ACTAAAGAAATCCATACGATTCATGT 57.036 30.769 0.00 0.00 40.47 3.21
2819 10847 8.165239 TGTATATTTTAGCAGTGGCCTATTTG 57.835 34.615 3.32 0.00 42.56 2.32
2820 10848 3.866883 TTTTAGCAGTGGCCTATTTGC 57.133 42.857 3.32 8.75 42.56 3.68
2828 10856 3.281332 GGCCTATTTGCCCTGTTGA 57.719 52.632 0.00 0.00 46.11 3.18
2829 10857 1.780503 GGCCTATTTGCCCTGTTGAT 58.219 50.000 0.00 0.00 46.11 2.57
2836 10873 0.961019 TTGCCCTGTTGATTCAGTGC 59.039 50.000 0.00 0.00 38.81 4.40
2843 10880 4.403432 CCCTGTTGATTCAGTGCCATTTAT 59.597 41.667 0.00 0.00 34.02 1.40
2844 10881 5.593909 CCCTGTTGATTCAGTGCCATTTATA 59.406 40.000 0.00 0.00 34.02 0.98
2845 10882 6.266103 CCCTGTTGATTCAGTGCCATTTATAT 59.734 38.462 0.00 0.00 34.02 0.86
2849 10886 9.368674 TGTTGATTCAGTGCCATTTATATTTTG 57.631 29.630 0.00 0.00 0.00 2.44
2859 10896 7.606073 GTGCCATTTATATTTTGGTCCAAAAGT 59.394 33.333 28.79 22.54 44.72 2.66
2907 10955 0.108396 TCTGCAGGCTGCTGTGTTTA 59.892 50.000 36.50 18.91 45.31 2.01
2908 10956 1.171308 CTGCAGGCTGCTGTGTTTAT 58.829 50.000 36.50 0.00 45.31 1.40
2910 10958 2.947652 CTGCAGGCTGCTGTGTTTATAT 59.052 45.455 36.50 0.00 45.31 0.86
2911 10959 3.355378 TGCAGGCTGCTGTGTTTATATT 58.645 40.909 36.50 0.00 45.31 1.28
2915 10963 5.062558 GCAGGCTGCTGTGTTTATATTTTTG 59.937 40.000 31.37 0.00 40.96 2.44
2916 10964 5.062558 CAGGCTGCTGTGTTTATATTTTTGC 59.937 40.000 0.00 0.00 0.00 3.68
2917 10965 5.047092 AGGCTGCTGTGTTTATATTTTTGCT 60.047 36.000 0.00 0.00 0.00 3.91
2918 10966 6.152661 AGGCTGCTGTGTTTATATTTTTGCTA 59.847 34.615 0.00 0.00 0.00 3.49
2919 10967 6.473455 GGCTGCTGTGTTTATATTTTTGCTAG 59.527 38.462 0.00 0.00 0.00 3.42
2974 11022 2.519771 TCTGCCCAGAATTTCAGCAT 57.480 45.000 8.59 0.00 33.91 3.79
2983 11031 5.306160 CCCAGAATTTCAGCATAAATGGGAT 59.694 40.000 12.38 0.00 34.03 3.85
2988 11036 8.365647 AGAATTTCAGCATAAATGGGATCAATC 58.634 33.333 0.00 0.00 0.00 2.67
3008 11057 1.273327 CCACAAGCATTTCCAGTTCCC 59.727 52.381 0.00 0.00 0.00 3.97
3018 11067 1.153289 CCAGTTCCCCTCTGCATCG 60.153 63.158 0.00 0.00 0.00 3.84
3021 11070 1.377202 GTTCCCCTCTGCATCGCAA 60.377 57.895 0.00 0.00 38.41 4.85
3022 11071 1.078214 TTCCCCTCTGCATCGCAAG 60.078 57.895 0.00 0.00 38.41 4.01
3023 11072 1.841302 TTCCCCTCTGCATCGCAAGT 61.841 55.000 0.00 0.00 38.41 3.16
3024 11073 1.817099 CCCCTCTGCATCGCAAGTC 60.817 63.158 0.00 0.00 38.41 3.01
3025 11074 1.078918 CCCTCTGCATCGCAAGTCA 60.079 57.895 0.00 0.00 38.41 3.41
3027 11076 0.390866 CCTCTGCATCGCAAGTCACT 60.391 55.000 0.00 0.00 38.41 3.41
3028 11077 1.436600 CTCTGCATCGCAAGTCACTT 58.563 50.000 0.00 0.00 38.41 3.16
3094 11148 1.398451 CGTAAGTTGTTCTTGCCGCAG 60.398 52.381 0.00 0.00 35.78 5.18
3096 11150 1.102978 AAGTTGTTCTTGCCGCAGTT 58.897 45.000 0.00 0.00 34.77 3.16
3097 11151 0.381801 AGTTGTTCTTGCCGCAGTTG 59.618 50.000 0.00 0.00 0.00 3.16
3116 11170 1.820906 TGAAGCGAGCATGGCATCC 60.821 57.895 0.00 0.00 44.88 3.51
3117 11171 1.820906 GAAGCGAGCATGGCATCCA 60.821 57.895 0.00 0.00 44.88 3.41
3119 11173 3.945434 GCGAGCATGGCATCCACG 61.945 66.667 3.77 3.77 40.68 4.94
3120 11174 3.274586 CGAGCATGGCATCCACGG 61.275 66.667 0.00 0.00 35.80 4.94
3121 11175 2.124570 GAGCATGGCATCCACGGT 60.125 61.111 0.00 0.00 35.80 4.83
3136 11190 0.463116 ACGGTGTGTGACCAACCTTC 60.463 55.000 2.83 0.00 46.55 3.46
3147 11201 3.454447 TGACCAACCTTCAGTTCTGAAGA 59.546 43.478 31.60 15.26 45.93 2.87
3158 11212 4.835056 TCAGTTCTGAAGATGTCCTGAAGA 59.165 41.667 0.00 0.00 0.00 2.87
3183 12482 3.711704 AGTAACACTGACCTGGGATATGG 59.288 47.826 0.00 0.00 0.00 2.74
3184 12483 2.568546 ACACTGACCTGGGATATGGA 57.431 50.000 0.00 0.00 0.00 3.41
3185 12484 2.845659 ACACTGACCTGGGATATGGAA 58.154 47.619 0.00 0.00 0.00 3.53
3186 12485 3.397527 ACACTGACCTGGGATATGGAAT 58.602 45.455 0.00 0.00 0.00 3.01
3188 12487 2.713167 ACTGACCTGGGATATGGAATGG 59.287 50.000 0.00 0.00 0.00 3.16
3190 12489 3.395607 CTGACCTGGGATATGGAATGGAA 59.604 47.826 0.00 0.00 0.00 3.53
3275 12592 3.106827 TGATCTTGTGCTGGAGGACATA 58.893 45.455 1.49 0.00 45.59 2.29
3280 12597 2.265367 TGTGCTGGAGGACATAGGAAA 58.735 47.619 0.00 0.00 41.48 3.13
3322 13877 0.871722 TGACAATACGGTGCACAAGC 59.128 50.000 20.43 0.00 42.57 4.01
3323 13878 0.168128 GACAATACGGTGCACAAGCC 59.832 55.000 20.43 0.00 41.13 4.35
3324 13879 0.250727 ACAATACGGTGCACAAGCCT 60.251 50.000 20.43 0.00 41.13 4.58
3325 13880 1.002659 ACAATACGGTGCACAAGCCTA 59.997 47.619 20.43 2.03 41.13 3.93
3326 13881 1.665679 CAATACGGTGCACAAGCCTAG 59.334 52.381 20.43 2.98 41.13 3.02
3327 13882 0.902531 ATACGGTGCACAAGCCTAGT 59.097 50.000 20.43 8.66 41.13 2.57
3328 13883 0.245539 TACGGTGCACAAGCCTAGTC 59.754 55.000 20.43 0.00 41.13 2.59
3329 13884 1.741770 CGGTGCACAAGCCTAGTCC 60.742 63.158 20.43 0.00 41.13 3.85
3330 13885 1.374947 GGTGCACAAGCCTAGTCCA 59.625 57.895 20.43 0.00 41.13 4.02
3331 13886 0.035056 GGTGCACAAGCCTAGTCCAT 60.035 55.000 20.43 0.00 41.13 3.41
3332 13887 1.614317 GGTGCACAAGCCTAGTCCATT 60.614 52.381 20.43 0.00 41.13 3.16
3333 13888 1.470098 GTGCACAAGCCTAGTCCATTG 59.530 52.381 13.17 0.00 41.13 2.82
3334 13889 1.073763 TGCACAAGCCTAGTCCATTGT 59.926 47.619 0.00 0.00 41.13 2.71
3335 13890 1.740025 GCACAAGCCTAGTCCATTGTC 59.260 52.381 0.00 0.00 33.76 3.18
3336 13891 2.616510 GCACAAGCCTAGTCCATTGTCT 60.617 50.000 0.00 0.00 33.76 3.41
3337 13892 3.265791 CACAAGCCTAGTCCATTGTCTC 58.734 50.000 0.00 0.00 33.76 3.36
3338 13893 3.055530 CACAAGCCTAGTCCATTGTCTCT 60.056 47.826 0.00 0.00 33.76 3.10
3339 13894 3.055530 ACAAGCCTAGTCCATTGTCTCTG 60.056 47.826 0.00 0.00 30.25 3.35
3340 13895 3.107402 AGCCTAGTCCATTGTCTCTGA 57.893 47.619 0.00 0.00 0.00 3.27
3341 13896 2.763448 AGCCTAGTCCATTGTCTCTGAC 59.237 50.000 0.00 0.00 0.00 3.51
3342 13897 2.480416 GCCTAGTCCATTGTCTCTGACG 60.480 54.545 0.00 0.00 34.95 4.35
3343 13898 2.480416 CCTAGTCCATTGTCTCTGACGC 60.480 54.545 0.00 0.00 34.95 5.19
3344 13899 1.261480 AGTCCATTGTCTCTGACGCT 58.739 50.000 0.00 0.00 34.95 5.07
3345 13900 2.447443 AGTCCATTGTCTCTGACGCTA 58.553 47.619 0.00 0.00 34.95 4.26
3346 13901 3.027412 AGTCCATTGTCTCTGACGCTAT 58.973 45.455 0.00 0.00 34.95 2.97
3347 13902 3.449018 AGTCCATTGTCTCTGACGCTATT 59.551 43.478 0.00 0.00 34.95 1.73
3348 13903 3.553511 GTCCATTGTCTCTGACGCTATTG 59.446 47.826 0.00 0.00 34.95 1.90
3349 13904 3.195610 TCCATTGTCTCTGACGCTATTGT 59.804 43.478 0.00 0.00 34.95 2.71
3350 13905 3.553511 CCATTGTCTCTGACGCTATTGTC 59.446 47.826 0.00 0.00 39.37 3.18
3351 13906 3.934457 TTGTCTCTGACGCTATTGTCA 57.066 42.857 0.00 0.00 46.15 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.205587 GCCTTGTTCTGAATCATCTCCAT 58.794 43.478 0.00 0.00 0.00 3.41
18 19 3.997064 CTGACGCTCTCCCGCCTTG 62.997 68.421 0.00 0.00 0.00 3.61
32 33 1.570813 GCAACCCAAAACAAGCTGAC 58.429 50.000 0.00 0.00 0.00 3.51
45 46 0.831711 AACCACCTTGATGGCAACCC 60.832 55.000 0.00 0.00 44.33 4.11
50 51 0.883833 CTGACAACCACCTTGATGGC 59.116 55.000 0.00 0.00 44.33 4.40
52 53 1.881973 CCACTGACAACCACCTTGATG 59.118 52.381 0.00 0.00 33.59 3.07
53 54 1.202927 CCCACTGACAACCACCTTGAT 60.203 52.381 0.00 0.00 33.59 2.57
57 3718 1.696314 ACCCCACTGACAACCACCT 60.696 57.895 0.00 0.00 0.00 4.00
77 3738 1.536418 ACAGCAGGCACTACCCAGA 60.536 57.895 0.00 0.00 40.58 3.86
104 3765 0.597568 CAGCAACCAGAATGCCGAAA 59.402 50.000 0.00 0.00 44.91 3.46
112 3773 1.321474 CAAAGAGGCAGCAACCAGAA 58.679 50.000 0.00 0.00 0.00 3.02
146 3807 3.064545 GCAACAGCATCAGGATACAAGAC 59.935 47.826 0.00 0.00 41.41 3.01
156 3817 2.608752 GGAAAACCAGCAACAGCATCAG 60.609 50.000 0.00 0.00 0.00 2.90
160 3821 0.685785 TGGGAAAACCAGCAACAGCA 60.686 50.000 0.00 0.00 46.80 4.41
256 3919 9.924650 ACACCCGAAATATAGAACATTATCTAC 57.075 33.333 0.00 0.00 34.86 2.59
261 3924 8.014070 TCTCACACCCGAAATATAGAACATTA 57.986 34.615 0.00 0.00 0.00 1.90
276 3939 2.022129 GACACGCTTCTCACACCCG 61.022 63.158 0.00 0.00 0.00 5.28
332 3999 2.886523 CAATTCCACAAGCCTGAGTTCA 59.113 45.455 0.00 0.00 0.00 3.18
365 4032 3.596214 AGCTACCAAATTACACACCTCG 58.404 45.455 0.00 0.00 0.00 4.63
387 4054 5.529581 AATTTTATTCCTTGGGGCATACG 57.470 39.130 0.00 0.00 0.00 3.06
413 4080 5.059404 ACAGGAAAAATAATCACTTGGCG 57.941 39.130 0.00 0.00 0.00 5.69
463 5670 5.170021 CACCCAATGAAATGGTTGTACATG 58.830 41.667 0.00 0.00 38.91 3.21
482 5689 2.514803 AGACATAGTTTTGCCACACCC 58.485 47.619 0.00 0.00 0.00 4.61
495 5702 2.893637 CACCGGAAGTGGAAGACATAG 58.106 52.381 9.46 0.00 43.26 2.23
573 5780 5.163754 CGATGAGGTAGCCCTTTTACAAAAG 60.164 44.000 7.35 7.35 42.86 2.27
582 5789 3.231298 GGCGATGAGGTAGCCCTT 58.769 61.111 0.00 0.00 42.86 3.95
588 5795 2.304092 ACGATACAAGGCGATGAGGTA 58.696 47.619 0.00 0.00 0.00 3.08
595 5802 1.517694 GCCGAACGATACAAGGCGA 60.518 57.895 0.00 0.00 38.28 5.54
612 5819 2.159352 ACAACCAAACAAAGTACACGGC 60.159 45.455 0.00 0.00 0.00 5.68
614 5821 3.302170 GCAACAACCAAACAAAGTACACG 59.698 43.478 0.00 0.00 0.00 4.49
778 5995 4.169059 ACATATTGCTACATGGCAGGAA 57.831 40.909 5.99 6.09 43.39 3.36
779 5996 3.862877 ACATATTGCTACATGGCAGGA 57.137 42.857 5.99 0.00 43.39 3.86
839 6058 4.951715 TGATGAGAATTTACTTGCCAGCAT 59.048 37.500 0.00 0.00 0.00 3.79
840 6059 4.334552 TGATGAGAATTTACTTGCCAGCA 58.665 39.130 0.00 0.00 0.00 4.41
841 6060 4.970662 TGATGAGAATTTACTTGCCAGC 57.029 40.909 0.00 0.00 0.00 4.85
842 6061 7.330900 AGAATGATGAGAATTTACTTGCCAG 57.669 36.000 0.00 0.00 0.00 4.85
843 6062 7.707624 AAGAATGATGAGAATTTACTTGCCA 57.292 32.000 0.00 0.00 0.00 4.92
960 6198 3.486383 CTTGGTTATGGGTCACACTGTT 58.514 45.455 0.00 0.00 0.00 3.16
961 6199 2.814097 GCTTGGTTATGGGTCACACTGT 60.814 50.000 0.00 0.00 0.00 3.55
962 6200 1.812571 GCTTGGTTATGGGTCACACTG 59.187 52.381 0.00 0.00 0.00 3.66
963 6201 1.423541 TGCTTGGTTATGGGTCACACT 59.576 47.619 0.00 0.00 0.00 3.55
964 6202 1.539827 GTGCTTGGTTATGGGTCACAC 59.460 52.381 0.00 0.00 0.00 3.82
965 6203 1.143889 TGTGCTTGGTTATGGGTCACA 59.856 47.619 0.00 0.00 0.00 3.58
966 6204 1.812571 CTGTGCTTGGTTATGGGTCAC 59.187 52.381 0.00 0.00 0.00 3.67
967 6205 1.886222 GCTGTGCTTGGTTATGGGTCA 60.886 52.381 0.00 0.00 0.00 4.02
968 6206 0.811281 GCTGTGCTTGGTTATGGGTC 59.189 55.000 0.00 0.00 0.00 4.46
1016 6256 4.039004 GCAGATCCTGAGAGCTATTCTTGA 59.961 45.833 0.00 0.00 36.33 3.02
1227 6467 1.269958 TGCCTGATACAGTGAGCACT 58.730 50.000 0.00 0.00 43.61 4.40
1284 6527 2.041081 TGGGGTAAGCACATAAACAGCT 59.959 45.455 0.00 0.00 0.00 4.24
1671 6914 4.135306 CAATCACATGAGGGAGATCCAAG 58.865 47.826 0.00 0.00 38.24 3.61
1712 6955 4.114794 GCCAGAAATAAATGACACATGGC 58.885 43.478 0.00 0.00 43.33 4.40
1798 7043 3.710209 ATGTGTGAGAAGGGAAGAAGG 57.290 47.619 0.00 0.00 0.00 3.46
1811 7057 9.719355 ATCTTATTGTAAACTGTGTATGTGTGA 57.281 29.630 0.00 0.00 0.00 3.58
1821 7072 9.243105 ACTTTATGGCATCTTATTGTAAACTGT 57.757 29.630 1.65 0.00 0.00 3.55
1834 7085 3.648545 GGAGGGAGTACTTTATGGCATCT 59.351 47.826 1.65 0.00 0.00 2.90
1847 7098 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1848 7099 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1849 7100 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1850 7101 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1851 7102 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1852 7103 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1853 7104 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
1854 7105 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
1855 7106 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
1856 7107 5.238650 AGTTCAAGACACTTATTTTGGGACG 59.761 40.000 0.00 0.00 0.00 4.79
1857 7108 6.635030 AGTTCAAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
1858 7109 7.996644 ACTAAGTTCAAGACACTTATTTTGGGA 59.003 33.333 0.00 0.00 36.39 4.37
1859 7110 8.166422 ACTAAGTTCAAGACACTTATTTTGGG 57.834 34.615 0.00 0.00 36.39 4.12
1868 7119 9.174166 ACAAATTTGTACTAAGTTCAAGACACT 57.826 29.630 22.10 0.00 40.16 3.55
1894 7145 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
1896 7147 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
1897 7148 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
1898 7149 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
1899 7150 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
1900 7151 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
1901 7152 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
1904 7155 9.391006 TCAAAATAAGTGTCTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
1905 7156 9.651718 CTCAAAATAAGTGTCTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
1906 7157 9.607988 TCTCAAAATAAGTGTCTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
1907 7158 8.506168 TCTCAAAATAAGTGTCTCAACTTTGT 57.494 30.769 0.00 0.00 40.77 2.83
1911 7162 9.868277 CTCTATCTCAAAATAAGTGTCTCAACT 57.132 33.333 0.00 0.00 0.00 3.16
1912 7163 9.092876 CCTCTATCTCAAAATAAGTGTCTCAAC 57.907 37.037 0.00 0.00 0.00 3.18
1913 7164 8.260818 CCCTCTATCTCAAAATAAGTGTCTCAA 58.739 37.037 0.00 0.00 0.00 3.02
1914 7165 7.619698 TCCCTCTATCTCAAAATAAGTGTCTCA 59.380 37.037 0.00 0.00 0.00 3.27
1915 7166 8.012957 TCCCTCTATCTCAAAATAAGTGTCTC 57.987 38.462 0.00 0.00 0.00 3.36
1916 7167 7.979786 TCCCTCTATCTCAAAATAAGTGTCT 57.020 36.000 0.00 0.00 0.00 3.41
1928 7179 8.982723 GGCTAAATACATATTCCCTCTATCTCA 58.017 37.037 0.00 0.00 0.00 3.27
1929 7180 8.138712 CGGCTAAATACATATTCCCTCTATCTC 58.861 40.741 0.00 0.00 0.00 2.75
1930 7181 7.418025 GCGGCTAAATACATATTCCCTCTATCT 60.418 40.741 0.00 0.00 0.00 1.98
1931 7182 6.702282 GCGGCTAAATACATATTCCCTCTATC 59.298 42.308 0.00 0.00 0.00 2.08
1932 7183 6.384305 AGCGGCTAAATACATATTCCCTCTAT 59.616 38.462 0.00 0.00 0.00 1.98
1933 7184 5.720041 AGCGGCTAAATACATATTCCCTCTA 59.280 40.000 0.00 0.00 0.00 2.43
1934 7185 4.532521 AGCGGCTAAATACATATTCCCTCT 59.467 41.667 0.00 0.00 0.00 3.69
1935 7186 4.833390 AGCGGCTAAATACATATTCCCTC 58.167 43.478 0.00 0.00 0.00 4.30
1936 7187 4.910458 AGCGGCTAAATACATATTCCCT 57.090 40.909 0.00 0.00 0.00 4.20
1937 7188 4.760204 ACAAGCGGCTAAATACATATTCCC 59.240 41.667 1.35 0.00 0.00 3.97
1938 7189 5.941948 ACAAGCGGCTAAATACATATTCC 57.058 39.130 1.35 0.00 0.00 3.01
1939 7190 6.649557 ACCTACAAGCGGCTAAATACATATTC 59.350 38.462 1.35 0.00 0.00 1.75
2039 7322 8.650143 AAAACCCACTAAAAGATGTACATCAT 57.350 30.769 32.01 21.26 40.22 2.45
2119 7402 2.835580 CAGCATCTCTGGGAGGTATG 57.164 55.000 0.00 0.00 39.15 2.39
2190 7473 4.592485 ACCTGTGTCTCTCTTGTAACAG 57.408 45.455 0.00 0.00 35.82 3.16
2245 7528 2.793790 CTCAAATTCCTCTCGCTCGATG 59.206 50.000 0.00 0.00 0.00 3.84
2272 7555 2.028476 CCCGGCGTCCATGAATATCTTA 60.028 50.000 6.01 0.00 0.00 2.10
2301 7584 3.124636 CAGCACCGTTACAATCTTGTACC 59.875 47.826 2.33 0.00 42.84 3.34
2312 7595 1.356527 CTAACGCCCAGCACCGTTAC 61.357 60.000 1.99 0.00 44.79 2.50
2315 7598 2.573609 GATCTAACGCCCAGCACCGT 62.574 60.000 0.00 0.00 39.70 4.83
2326 7609 7.753132 GGATAGAGCTCAATAACAGATCTAACG 59.247 40.741 17.77 0.00 41.12 3.18
2350 7633 2.655090 TTGCATGGAGTGTTCAAGGA 57.345 45.000 0.00 0.00 0.00 3.36
2386 7669 6.038161 GTGCTGCCTTGTGAATATGTAATACA 59.962 38.462 0.00 0.00 0.00 2.29
2393 7676 3.853831 TTGTGCTGCCTTGTGAATATG 57.146 42.857 0.00 0.00 0.00 1.78
2404 7687 1.210870 CACATGTTGTTTGTGCTGCC 58.789 50.000 0.00 0.00 38.18 4.85
2405 7688 1.589320 CACACATGTTGTTTGTGCTGC 59.411 47.619 0.00 0.00 46.65 5.25
2417 7702 2.368439 ACAACAAGACAGCACACATGT 58.632 42.857 0.00 0.00 0.00 3.21
2452 7770 2.614481 GGGACTCACACCTCGCAAAATA 60.614 50.000 0.00 0.00 0.00 1.40
2497 7815 6.031751 TGTACACACATATGTCTTGCAGTA 57.968 37.500 5.07 0.28 36.72 2.74
2512 7830 2.611518 GAGCAGAGTCCATGTACACAC 58.388 52.381 0.00 0.00 0.00 3.82
2519 7837 1.142748 GACCGGAGCAGAGTCCATG 59.857 63.158 9.46 0.00 36.23 3.66
2538 7864 9.353431 TGTAGATGGCAATTTATACATGAACAT 57.647 29.630 0.00 0.00 0.00 2.71
2555 7883 0.938008 GCGCCTTAACTGTAGATGGC 59.062 55.000 0.00 8.62 37.24 4.40
2568 7896 5.359576 TCTCCATTAACAAAATATGCGCCTT 59.640 36.000 4.18 0.00 0.00 4.35
2569 7897 4.887071 TCTCCATTAACAAAATATGCGCCT 59.113 37.500 4.18 0.00 0.00 5.52
2571 7899 8.853345 CATTATCTCCATTAACAAAATATGCGC 58.147 33.333 0.00 0.00 0.00 6.09
2617 7945 5.808366 AGATAGTGGACACTGAAACAGAA 57.192 39.130 14.86 0.00 42.52 3.02
2619 10645 9.088512 GTAATAAGATAGTGGACACTGAAACAG 57.911 37.037 14.86 0.00 42.52 3.16
2636 10662 6.902771 AGTACCGATGCTGAGTAATAAGAT 57.097 37.500 0.00 0.00 0.00 2.40
2637 10663 6.710597 AAGTACCGATGCTGAGTAATAAGA 57.289 37.500 0.00 0.00 0.00 2.10
2645 10673 2.002586 CACCAAAGTACCGATGCTGAG 58.997 52.381 0.00 0.00 0.00 3.35
2654 10682 5.277345 GCATACATCGAATCACCAAAGTACC 60.277 44.000 0.00 0.00 0.00 3.34
2661 10689 6.901265 CATTAATGCATACATCGAATCACCA 58.099 36.000 0.00 0.00 34.62 4.17
2678 10706 3.181498 TGGCACTTGATCACGCATTAATG 60.181 43.478 11.27 11.27 0.00 1.90
2679 10707 3.016031 TGGCACTTGATCACGCATTAAT 58.984 40.909 11.79 0.00 0.00 1.40
2680 10708 2.419673 CTGGCACTTGATCACGCATTAA 59.580 45.455 11.79 0.00 0.00 1.40
2681 10709 2.009051 CTGGCACTTGATCACGCATTA 58.991 47.619 11.79 0.00 0.00 1.90
2682 10710 0.806868 CTGGCACTTGATCACGCATT 59.193 50.000 11.79 0.00 0.00 3.56
2683 10711 0.321919 ACTGGCACTTGATCACGCAT 60.322 50.000 11.79 0.00 0.00 4.73
2684 10712 0.534877 AACTGGCACTTGATCACGCA 60.535 50.000 11.79 0.00 0.00 5.24
2685 10713 0.593128 AAACTGGCACTTGATCACGC 59.407 50.000 0.00 0.00 0.00 5.34
2686 10714 3.498397 AGTAAAACTGGCACTTGATCACG 59.502 43.478 0.00 0.00 0.00 4.35
2687 10715 4.787598 CAGTAAAACTGGCACTTGATCAC 58.212 43.478 0.00 0.00 42.35 3.06
2698 10726 7.677276 GCTATGCATAGTTCACAGTAAAACTGG 60.677 40.741 29.62 4.41 40.17 4.00
2699 10727 7.065085 AGCTATGCATAGTTCACAGTAAAACTG 59.935 37.037 29.62 5.53 40.88 3.16
2700 10728 7.106239 AGCTATGCATAGTTCACAGTAAAACT 58.894 34.615 29.62 13.77 39.07 2.66
2701 10729 7.308782 AGCTATGCATAGTTCACAGTAAAAC 57.691 36.000 29.62 11.97 32.96 2.43
2702 10730 6.538742 GGAGCTATGCATAGTTCACAGTAAAA 59.461 38.462 36.33 4.66 40.89 1.52
2703 10731 6.049149 GGAGCTATGCATAGTTCACAGTAAA 58.951 40.000 36.33 5.06 40.89 2.01
2704 10732 5.128663 TGGAGCTATGCATAGTTCACAGTAA 59.871 40.000 36.33 19.69 40.89 2.24
2705 10733 4.649218 TGGAGCTATGCATAGTTCACAGTA 59.351 41.667 36.33 21.29 40.89 2.74
2706 10734 3.452264 TGGAGCTATGCATAGTTCACAGT 59.548 43.478 36.33 15.78 40.89 3.55
2707 10735 4.063998 TGGAGCTATGCATAGTTCACAG 57.936 45.455 36.33 16.85 40.89 3.66
2708 10736 4.141642 ACATGGAGCTATGCATAGTTCACA 60.142 41.667 36.33 31.50 40.89 3.58
2709 10737 4.212847 CACATGGAGCTATGCATAGTTCAC 59.787 45.833 36.33 28.47 40.89 3.18
2710 10738 4.383173 CACATGGAGCTATGCATAGTTCA 58.617 43.478 36.33 27.94 40.89 3.18
2711 10739 3.750130 CCACATGGAGCTATGCATAGTTC 59.250 47.826 31.59 31.59 34.89 3.01
2712 10740 3.137176 ACCACATGGAGCTATGCATAGTT 59.863 43.478 29.62 25.85 34.89 2.24
2713 10741 2.707791 ACCACATGGAGCTATGCATAGT 59.292 45.455 29.62 18.73 34.89 2.12
2714 10742 3.072211 CACCACATGGAGCTATGCATAG 58.928 50.000 26.42 26.42 34.89 2.23
2715 10743 2.811504 GCACCACATGGAGCTATGCATA 60.812 50.000 12.51 6.20 46.30 3.14
2716 10744 1.977056 CACCACATGGAGCTATGCAT 58.023 50.000 3.79 3.79 38.12 3.96
2717 10745 0.749091 GCACCACATGGAGCTATGCA 60.749 55.000 12.51 0.00 46.30 3.96
2718 10746 2.028130 GCACCACATGGAGCTATGC 58.972 57.895 12.51 4.11 46.30 3.14
2724 10752 1.996786 GCAATCGGCACCACATGGAG 61.997 60.000 4.53 0.00 43.97 3.86
2725 10753 2.045708 GCAATCGGCACCACATGGA 61.046 57.895 4.53 0.00 43.97 3.41
2726 10754 2.491152 GCAATCGGCACCACATGG 59.509 61.111 0.00 0.00 43.97 3.66
2742 10770 7.704933 GTCAGCAATCAGACATGCAAATATGC 61.705 42.308 11.58 0.00 44.95 3.14
2743 10771 5.685954 GTCAGCAATCAGACATGCAAATATG 59.314 40.000 11.58 0.00 44.95 1.78
2744 10772 5.593095 AGTCAGCAATCAGACATGCAAATAT 59.407 36.000 11.58 0.00 44.95 1.28
2745 10773 4.945543 AGTCAGCAATCAGACATGCAAATA 59.054 37.500 11.58 0.00 44.95 1.40
2746 10774 3.762288 AGTCAGCAATCAGACATGCAAAT 59.238 39.130 11.58 0.00 44.95 2.32
2747 10775 3.151554 AGTCAGCAATCAGACATGCAAA 58.848 40.909 11.58 0.00 44.95 3.68
2781 10809 9.758651 TGCTAAAATATACAGTACATGAATCGT 57.241 29.630 0.00 0.00 0.00 3.73
2786 10814 7.441157 GCCACTGCTAAAATATACAGTACATGA 59.559 37.037 0.00 0.00 41.28 3.07
2787 10815 7.307989 GGCCACTGCTAAAATATACAGTACATG 60.308 40.741 0.00 0.00 41.28 3.21
2788 10816 6.710744 GGCCACTGCTAAAATATACAGTACAT 59.289 38.462 0.00 0.00 41.28 2.29
2789 10817 6.053005 GGCCACTGCTAAAATATACAGTACA 58.947 40.000 0.00 0.00 41.28 2.90
2790 10818 6.289064 AGGCCACTGCTAAAATATACAGTAC 58.711 40.000 5.01 0.00 41.28 2.73
2791 10819 6.494666 AGGCCACTGCTAAAATATACAGTA 57.505 37.500 5.01 0.00 41.28 2.74
2792 10820 5.373812 AGGCCACTGCTAAAATATACAGT 57.626 39.130 5.01 0.00 43.92 3.55
2793 10821 7.986085 AATAGGCCACTGCTAAAATATACAG 57.014 36.000 5.01 0.00 37.74 2.74
2820 10848 1.843368 ATGGCACTGAATCAACAGGG 58.157 50.000 0.00 0.00 43.36 4.45
2821 10849 3.947910 AAATGGCACTGAATCAACAGG 57.052 42.857 0.00 0.00 41.59 4.00
2822 10850 9.590451 AAAATATAAATGGCACTGAATCAACAG 57.410 29.630 0.00 0.00 42.78 3.16
2823 10851 9.368674 CAAAATATAAATGGCACTGAATCAACA 57.631 29.630 0.00 0.00 0.00 3.33
2824 10852 8.819974 CCAAAATATAAATGGCACTGAATCAAC 58.180 33.333 0.00 0.00 0.00 3.18
2825 10853 8.538701 ACCAAAATATAAATGGCACTGAATCAA 58.461 29.630 0.00 0.00 37.77 2.57
2827 10855 7.653311 GGACCAAAATATAAATGGCACTGAATC 59.347 37.037 0.00 0.00 37.77 2.52
2828 10856 7.125507 TGGACCAAAATATAAATGGCACTGAAT 59.874 33.333 0.00 0.00 37.77 2.57
2829 10857 6.438741 TGGACCAAAATATAAATGGCACTGAA 59.561 34.615 0.00 0.00 37.77 3.02
2866 10903 7.919091 GCAGATGCAATTTAGAAATGAATCAGA 59.081 33.333 0.00 0.00 41.59 3.27
2867 10904 8.062231 GCAGATGCAATTTAGAAATGAATCAG 57.938 34.615 0.00 0.00 41.59 2.90
2974 11022 4.608269 TGCTTGTGGATTGATCCCATTTA 58.392 39.130 7.53 0.00 46.59 1.40
2983 11031 3.499338 ACTGGAAATGCTTGTGGATTGA 58.501 40.909 0.00 0.00 34.44 2.57
2988 11036 1.273327 GGGAACTGGAAATGCTTGTGG 59.727 52.381 0.00 0.00 0.00 4.17
2994 11042 1.467920 CAGAGGGGAACTGGAAATGC 58.532 55.000 0.00 0.00 0.00 3.56
3008 11057 0.390866 AGTGACTTGCGATGCAGAGG 60.391 55.000 0.00 0.00 40.61 3.69
3059 11113 7.864307 ACAACTTACGTGTAAGCTTTACTAG 57.136 36.000 17.41 5.25 44.74 2.57
3060 11114 8.137437 AGAACAACTTACGTGTAAGCTTTACTA 58.863 33.333 17.41 0.00 44.74 1.82
3061 11115 6.982724 AGAACAACTTACGTGTAAGCTTTACT 59.017 34.615 17.41 10.20 44.74 2.24
3063 11117 7.623770 CAAGAACAACTTACGTGTAAGCTTTA 58.376 34.615 17.41 0.00 44.74 1.85
3064 11118 6.483687 CAAGAACAACTTACGTGTAAGCTTT 58.516 36.000 17.41 9.39 44.74 3.51
3068 11122 4.607557 CGGCAAGAACAACTTACGTGTAAG 60.608 45.833 16.21 16.21 45.95 2.34
3079 11133 0.100503 ACAACTGCGGCAAGAACAAC 59.899 50.000 3.44 0.00 0.00 3.32
3086 11140 2.721231 GCTTCACAACTGCGGCAA 59.279 55.556 3.44 0.00 0.00 4.52
3094 11148 1.154150 GCCATGCTCGCTTCACAAC 60.154 57.895 0.00 0.00 0.00 3.32
3096 11150 1.371337 GATGCCATGCTCGCTTCACA 61.371 55.000 4.24 0.00 32.28 3.58
3097 11151 1.354506 GATGCCATGCTCGCTTCAC 59.645 57.895 4.24 0.00 32.28 3.18
3104 11158 2.124570 ACCGTGGATGCCATGCTC 60.125 61.111 0.00 0.00 39.07 4.26
3106 11160 2.751436 ACACCGTGGATGCCATGC 60.751 61.111 3.03 0.00 39.07 4.06
3120 11174 2.038387 ACTGAAGGTTGGTCACACAC 57.962 50.000 0.00 0.00 0.00 3.82
3121 11175 2.238646 AGAACTGAAGGTTGGTCACACA 59.761 45.455 0.00 0.00 38.41 3.72
3136 11190 5.144692 TCTTCAGGACATCTTCAGAACTG 57.855 43.478 0.00 0.00 0.00 3.16
3147 11201 6.010850 TCAGTGTTACTACTCTTCAGGACAT 58.989 40.000 0.00 0.00 0.00 3.06
3158 11212 3.537795 TCCCAGGTCAGTGTTACTACT 57.462 47.619 0.00 0.00 0.00 2.57
3183 12482 3.569701 TCTTTGCCTTCAGTGTTCCATTC 59.430 43.478 0.00 0.00 0.00 2.67
3184 12483 3.565307 TCTTTGCCTTCAGTGTTCCATT 58.435 40.909 0.00 0.00 0.00 3.16
3185 12484 3.152341 CTCTTTGCCTTCAGTGTTCCAT 58.848 45.455 0.00 0.00 0.00 3.41
3186 12485 2.575532 CTCTTTGCCTTCAGTGTTCCA 58.424 47.619 0.00 0.00 0.00 3.53
3188 12487 1.949525 TGCTCTTTGCCTTCAGTGTTC 59.050 47.619 0.00 0.00 42.00 3.18
3190 12489 1.602311 CTGCTCTTTGCCTTCAGTGT 58.398 50.000 0.00 0.00 42.00 3.55
3193 12492 0.240411 GTGCTGCTCTTTGCCTTCAG 59.760 55.000 0.00 0.00 42.00 3.02
3194 12493 0.179009 AGTGCTGCTCTTTGCCTTCA 60.179 50.000 0.00 0.00 42.00 3.02
3280 12597 6.604396 TCATGTTGAGCACCTGAAATATGAAT 59.396 34.615 0.00 0.00 27.88 2.57
3322 13877 2.480416 GCGTCAGAGACAATGGACTAGG 60.480 54.545 0.00 0.00 32.09 3.02
3323 13878 2.425312 AGCGTCAGAGACAATGGACTAG 59.575 50.000 0.00 0.00 32.09 2.57
3324 13879 2.447443 AGCGTCAGAGACAATGGACTA 58.553 47.619 0.00 0.00 32.09 2.59
3325 13880 1.261480 AGCGTCAGAGACAATGGACT 58.739 50.000 0.00 0.00 32.09 3.85
3326 13881 2.941453 TAGCGTCAGAGACAATGGAC 57.059 50.000 0.00 0.00 32.09 4.02
3327 13882 3.195610 ACAATAGCGTCAGAGACAATGGA 59.804 43.478 0.00 0.00 32.09 3.41
3328 13883 3.525537 ACAATAGCGTCAGAGACAATGG 58.474 45.455 0.00 0.00 32.09 3.16
3329 13884 4.176271 TGACAATAGCGTCAGAGACAATG 58.824 43.478 0.00 0.00 40.94 2.82
3330 13885 4.456280 TGACAATAGCGTCAGAGACAAT 57.544 40.909 0.00 0.00 40.94 2.71
3331 13886 3.934457 TGACAATAGCGTCAGAGACAA 57.066 42.857 0.00 0.00 40.94 3.18
3332 13887 3.934457 TTGACAATAGCGTCAGAGACA 57.066 42.857 0.00 0.00 46.14 3.41
3333 13888 4.864806 TGATTTGACAATAGCGTCAGAGAC 59.135 41.667 0.00 0.00 46.14 3.36
3334 13889 5.072040 TGATTTGACAATAGCGTCAGAGA 57.928 39.130 0.00 0.00 46.14 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.