Multiple sequence alignment - TraesCS1B01G347500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G347500 chr1B 100.000 2723 0 0 1 2723 576596646 576599368 0.000000e+00 5029.0
1 TraesCS1B01G347500 chr1D 91.247 1131 65 17 333 1451 426753676 426754784 0.000000e+00 1509.0
2 TraesCS1B01G347500 chr1D 88.991 436 30 7 1333 1759 426754747 426755173 8.640000e-145 523.0
3 TraesCS1B01G347500 chr1D 89.455 275 24 4 31 305 426752245 426752514 2.600000e-90 342.0
4 TraesCS1B01G347500 chr1D 86.755 302 40 0 2109 2410 69475972 69475671 1.210000e-88 337.0
5 TraesCS1B01G347500 chr1D 85.294 272 30 10 2412 2676 426755743 426756011 3.450000e-69 272.0
6 TraesCS1B01G347500 chr1D 79.351 339 39 18 1775 2107 426755442 426755755 2.750000e-50 209.0
7 TraesCS1B01G347500 chr1D 90.164 122 9 1 1333 1451 426754705 426754826 3.630000e-34 156.0
8 TraesCS1B01G347500 chr1D 88.750 80 6 1 1372 1451 426754666 426754742 8.030000e-16 95.3
9 TraesCS1B01G347500 chr1A 91.128 665 35 6 750 1409 521863221 521863866 0.000000e+00 880.0
10 TraesCS1B01G347500 chr1A 88.083 386 28 6 1367 1749 521863785 521864155 2.490000e-120 442.0
11 TraesCS1B01G347500 chr1A 90.000 330 30 2 457 784 521862887 521863215 9.010000e-115 424.0
12 TraesCS1B01G347500 chr1A 83.110 373 34 13 85 455 521849408 521849753 2.040000e-81 313.0
13 TraesCS1B01G347500 chr1A 86.822 129 14 1 1781 1906 521864365 521864493 1.020000e-29 141.0
14 TraesCS1B01G347500 chr6A 86.799 303 40 0 2108 2410 422776251 422775949 3.360000e-89 339.0
15 TraesCS1B01G347500 chr6D 86.469 303 40 1 2108 2410 454889234 454889535 5.620000e-87 331.0
16 TraesCS1B01G347500 chr6D 86.139 303 41 1 2108 2410 454922789 454923090 2.610000e-85 326.0
17 TraesCS1B01G347500 chr2A 86.084 309 41 2 2103 2410 743375188 743375495 5.620000e-87 331.0
18 TraesCS1B01G347500 chr3D 86.424 302 40 1 2109 2410 79555099 79555399 2.020000e-86 329.0
19 TraesCS1B01G347500 chr3A 85.993 307 42 1 2108 2413 597888028 597887722 7.270000e-86 327.0
20 TraesCS1B01G347500 chr7A 86.093 302 40 2 2110 2410 448445690 448445390 9.400000e-85 324.0
21 TraesCS1B01G347500 chr7A 85.668 307 40 2 2108 2410 252954057 252954363 1.220000e-83 320.0
22 TraesCS1B01G347500 chr4D 81.250 96 13 4 33 124 337059530 337059436 3.760000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G347500 chr1B 576596646 576599368 2722 False 5029.000000 5029 100.000000 1 2723 1 chr1B.!!$F1 2722
1 TraesCS1B01G347500 chr1D 426752245 426756011 3766 False 443.757143 1509 87.607429 31 2676 7 chr1D.!!$F1 2645
2 TraesCS1B01G347500 chr1A 521862887 521864493 1606 False 471.750000 880 89.008250 457 1906 4 chr1A.!!$F2 1449

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.597568 CCTTCGAATGCAAACTGCCA 59.402 50.0 0.0 0.0 44.23 4.92 F
1605 2878 0.176680 AGCTTGCGGAGGTGTATGAG 59.823 55.0 0.0 0.0 34.08 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 2885 0.247736 ACGTTGAGCCTCTCCATCAC 59.752 55.0 0.0 0.0 0.00 3.06 R
2406 3953 1.259609 AGGGTCGGTCACATAACGAA 58.740 50.0 0.0 0.0 38.46 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.859165 TGATGGTGAGGACTCAAACC 57.141 50.000 3.18 2.99 41.85 3.27
20 21 2.054021 TGATGGTGAGGACTCAAACCA 58.946 47.619 12.36 12.36 41.85 3.67
21 22 2.441375 TGATGGTGAGGACTCAAACCAA 59.559 45.455 13.56 0.00 41.85 3.67
22 23 3.117701 TGATGGTGAGGACTCAAACCAAA 60.118 43.478 13.56 5.22 41.85 3.28
23 24 2.650322 TGGTGAGGACTCAAACCAAAC 58.350 47.619 3.18 0.00 41.85 2.93
24 25 2.025793 TGGTGAGGACTCAAACCAAACA 60.026 45.455 3.18 0.00 41.85 2.83
25 26 3.222603 GGTGAGGACTCAAACCAAACAT 58.777 45.455 3.18 0.00 41.85 2.71
26 27 3.004734 GGTGAGGACTCAAACCAAACATG 59.995 47.826 3.18 0.00 41.85 3.21
27 28 2.622942 TGAGGACTCAAACCAAACATGC 59.377 45.455 0.00 0.00 36.53 4.06
28 29 2.887152 GAGGACTCAAACCAAACATGCT 59.113 45.455 0.00 0.00 0.00 3.79
29 30 2.887152 AGGACTCAAACCAAACATGCTC 59.113 45.455 0.00 0.00 0.00 4.26
39 40 3.319122 ACCAAACATGCTCTTTGTCCTTC 59.681 43.478 0.00 0.00 0.00 3.46
40 41 3.558505 CAAACATGCTCTTTGTCCTTCG 58.441 45.455 0.00 0.00 0.00 3.79
53 54 0.881118 TCCTTCGAATGCAAACTGCC 59.119 50.000 0.00 0.00 44.23 4.85
54 55 0.597568 CCTTCGAATGCAAACTGCCA 59.402 50.000 0.00 0.00 44.23 4.92
66 67 9.247126 GAATGCAAACTGCCAAAATAAATTTTT 57.753 25.926 0.00 0.00 44.23 1.94
128 129 8.373048 TGATATTCAAACGTACCATTATGACC 57.627 34.615 0.00 0.00 0.00 4.02
172 173 2.095059 AGTTCGCTCATTGCAATCCAAC 60.095 45.455 9.53 4.09 43.06 3.77
213 214 7.035004 TCAGTTGACCTTGTTCATTCAAAAAG 58.965 34.615 0.00 0.00 30.00 2.27
216 217 8.912988 AGTTGACCTTGTTCATTCAAAAAGATA 58.087 29.630 0.00 0.00 30.00 1.98
222 223 9.806203 CCTTGTTCATTCAAAAAGATATGCATA 57.194 29.630 9.27 9.27 0.00 3.14
233 234 9.518906 CAAAAAGATATGCATATAACAGCACAA 57.481 29.630 19.12 0.00 44.49 3.33
250 251 8.417273 ACAGCACAACTTTAATTTATAAGGGT 57.583 30.769 0.00 0.00 0.00 4.34
251 252 8.520351 ACAGCACAACTTTAATTTATAAGGGTC 58.480 33.333 0.00 0.00 0.00 4.46
252 253 7.696453 CAGCACAACTTTAATTTATAAGGGTCG 59.304 37.037 0.00 0.00 0.00 4.79
253 254 7.608761 AGCACAACTTTAATTTATAAGGGTCGA 59.391 33.333 0.00 0.00 0.00 4.20
297 298 9.872757 GAACTAAATTCACGTCACTTATTTTGA 57.127 29.630 0.00 0.00 37.27 2.69
300 301 9.530129 CTAAATTCACGTCACTTATTTTGAGAC 57.470 33.333 0.00 0.00 0.00 3.36
307 308 6.396459 GTCACTTATTTTGAGACGAAGAGG 57.604 41.667 0.00 0.00 0.00 3.69
310 311 5.120830 CACTTATTTTGAGACGAAGAGGGTG 59.879 44.000 0.00 0.00 0.00 4.61
311 312 2.543777 TTTTGAGACGAAGAGGGTGG 57.456 50.000 0.00 0.00 0.00 4.61
312 313 1.420430 TTTGAGACGAAGAGGGTGGT 58.580 50.000 0.00 0.00 0.00 4.16
313 314 1.420430 TTGAGACGAAGAGGGTGGTT 58.580 50.000 0.00 0.00 0.00 3.67
314 315 1.420430 TGAGACGAAGAGGGTGGTTT 58.580 50.000 0.00 0.00 0.00 3.27
315 316 2.600790 TGAGACGAAGAGGGTGGTTTA 58.399 47.619 0.00 0.00 0.00 2.01
316 317 3.170717 TGAGACGAAGAGGGTGGTTTAT 58.829 45.455 0.00 0.00 0.00 1.40
318 319 4.773674 TGAGACGAAGAGGGTGGTTTATAA 59.226 41.667 0.00 0.00 0.00 0.98
319 320 5.105473 TGAGACGAAGAGGGTGGTTTATAAG 60.105 44.000 0.00 0.00 0.00 1.73
320 321 4.161754 AGACGAAGAGGGTGGTTTATAAGG 59.838 45.833 0.00 0.00 0.00 2.69
321 322 3.203716 CGAAGAGGGTGGTTTATAAGGC 58.796 50.000 0.00 0.00 0.00 4.35
322 323 3.118371 CGAAGAGGGTGGTTTATAAGGCT 60.118 47.826 0.00 0.00 0.00 4.58
323 324 4.100498 CGAAGAGGGTGGTTTATAAGGCTA 59.900 45.833 0.00 0.00 0.00 3.93
324 325 5.612351 GAAGAGGGTGGTTTATAAGGCTAG 58.388 45.833 0.00 0.00 0.00 3.42
325 326 3.974642 AGAGGGTGGTTTATAAGGCTAGG 59.025 47.826 0.00 0.00 0.00 3.02
327 328 4.578128 AGGGTGGTTTATAAGGCTAGGAT 58.422 43.478 0.00 0.00 0.00 3.24
329 330 4.597940 GGGTGGTTTATAAGGCTAGGATCT 59.402 45.833 0.00 0.00 0.00 2.75
330 331 5.513267 GGGTGGTTTATAAGGCTAGGATCTG 60.513 48.000 0.00 0.00 0.00 2.90
331 332 5.307196 GGTGGTTTATAAGGCTAGGATCTGA 59.693 44.000 0.00 0.00 0.00 3.27
345 1480 2.242926 GATCTGAGGTCGATCCATCCA 58.757 52.381 0.00 0.00 39.02 3.41
351 1486 1.681793 AGGTCGATCCATCCAAGTACG 59.318 52.381 0.00 0.00 39.02 3.67
359 1494 2.811431 TCCATCCAAGTACGTGCTTTTG 59.189 45.455 16.73 13.49 0.00 2.44
369 1504 7.705325 CCAAGTACGTGCTTTTGATACTATAGT 59.295 37.037 16.73 10.87 0.00 2.12
376 1511 9.988350 CGTGCTTTTGATACTATAGTTTCATTT 57.012 29.630 21.83 0.00 36.25 2.32
427 1563 4.607239 ACTCCCTCTGTCCGAAATTACTA 58.393 43.478 0.00 0.00 0.00 1.82
430 1566 4.643784 TCCCTCTGTCCGAAATTACTAGTC 59.356 45.833 0.00 0.00 0.00 2.59
431 1567 4.645588 CCCTCTGTCCGAAATTACTAGTCT 59.354 45.833 0.00 0.00 0.00 3.24
432 1568 5.221087 CCCTCTGTCCGAAATTACTAGTCTC 60.221 48.000 0.00 0.00 0.00 3.36
436 1572 7.663827 TCTGTCCGAAATTACTAGTCTCAAAA 58.336 34.615 0.00 0.00 0.00 2.44
437 1573 8.145767 TCTGTCCGAAATTACTAGTCTCAAAAA 58.854 33.333 0.00 0.00 0.00 1.94
513 1650 2.682856 TGCAAGTAATTTCGGATGGAGC 59.317 45.455 0.00 0.00 0.00 4.70
609 1748 1.368641 TGTGCATCGTACATTCAGGC 58.631 50.000 0.00 0.00 0.00 4.85
618 1757 6.458206 GCATCGTACATTCAGGCAAGAATAAA 60.458 38.462 5.11 0.00 36.13 1.40
708 1847 7.962373 CCCATTTCAGTTTTTGTTTTCACTTTC 59.038 33.333 0.00 0.00 0.00 2.62
726 1865 6.699642 TCACTTTCGAAATCATATGCGACATA 59.300 34.615 11.70 0.00 31.91 2.29
750 1889 3.381045 CACTTCTCTACTGCACGTTCAA 58.619 45.455 0.00 0.00 0.00 2.69
827 2010 4.623167 CGGATGATTTATGTAGAGCCTTCG 59.377 45.833 0.00 0.00 0.00 3.79
888 2071 1.961793 TTTGGTTCAGTACGCAGCTT 58.038 45.000 0.00 0.00 0.00 3.74
894 2077 3.123116 GGTTCAGTACGCAGCTTCTTTAC 59.877 47.826 0.00 0.00 0.00 2.01
896 2079 4.188247 TCAGTACGCAGCTTCTTTACAT 57.812 40.909 0.00 0.00 0.00 2.29
911 2094 4.225042 TCTTTACATAAGAGCAGGCCTTGA 59.775 41.667 0.00 0.00 0.00 3.02
934 2117 1.242076 ATTGCACTTCACAGCCACTC 58.758 50.000 0.00 0.00 0.00 3.51
961 2144 3.751518 ACGCAAACAATCTCCCTAACTT 58.248 40.909 0.00 0.00 0.00 2.66
1115 2304 4.410400 CGACCCAGACCCCCTTGC 62.410 72.222 0.00 0.00 0.00 4.01
1375 2564 3.273788 AAGGAGAAGGCCGCCAAGG 62.274 63.158 13.15 0.00 44.97 3.61
1405 2678 0.818296 ATCGTCCGTCAAGAAGGAGG 59.182 55.000 15.50 15.50 43.13 4.30
1443 2716 1.011968 CGGCATCGTCCGTCAAGAAA 61.012 55.000 5.59 0.00 44.18 2.52
1454 2727 2.171840 CGTCAAGAAAGAGGAGGAGGA 58.828 52.381 0.00 0.00 0.00 3.71
1455 2728 2.165437 CGTCAAGAAAGAGGAGGAGGAG 59.835 54.545 0.00 0.00 0.00 3.69
1456 2729 2.499693 GTCAAGAAAGAGGAGGAGGAGG 59.500 54.545 0.00 0.00 0.00 4.30
1457 2730 2.112691 TCAAGAAAGAGGAGGAGGAGGT 59.887 50.000 0.00 0.00 0.00 3.85
1458 2731 2.235898 CAAGAAAGAGGAGGAGGAGGTG 59.764 54.545 0.00 0.00 0.00 4.00
1459 2732 1.199615 GAAAGAGGAGGAGGAGGTGG 58.800 60.000 0.00 0.00 0.00 4.61
1460 2733 0.793617 AAAGAGGAGGAGGAGGTGGA 59.206 55.000 0.00 0.00 0.00 4.02
1468 2741 1.585651 GGAGGAGGTGGAGGAGGAGA 61.586 65.000 0.00 0.00 0.00 3.71
1473 2746 1.000646 GGTGGAGGAGGAGACGAGT 60.001 63.158 0.00 0.00 0.00 4.18
1527 2800 2.289694 CGTCAAGAATGAGGAGGTGGTT 60.290 50.000 0.00 0.00 42.66 3.67
1530 2803 0.995024 AGAATGAGGAGGTGGTTGGG 59.005 55.000 0.00 0.00 0.00 4.12
1539 2812 2.791868 GGTGGTTGGGTGTGGTTGC 61.792 63.158 0.00 0.00 0.00 4.17
1563 2836 2.435059 GTTGGGAGAGCGAGGTGC 60.435 66.667 0.00 0.00 46.98 5.01
1605 2878 0.176680 AGCTTGCGGAGGTGTATGAG 59.823 55.000 0.00 0.00 34.08 2.90
1612 2885 1.878522 GAGGTGTATGAGCGCGTGG 60.879 63.158 8.43 0.00 0.00 4.94
1613 2886 2.125673 GGTGTATGAGCGCGTGGT 60.126 61.111 8.43 0.00 0.00 4.16
1618 2891 1.227234 TATGAGCGCGTGGTGATGG 60.227 57.895 4.91 0.00 0.00 3.51
1619 2892 1.671901 TATGAGCGCGTGGTGATGGA 61.672 55.000 4.91 0.00 0.00 3.41
1656 2929 4.225573 AGGAGAAGAGGATGGAGAAGATG 58.774 47.826 0.00 0.00 0.00 2.90
1669 2942 2.745821 GAGAAGATGTCATGTTGCAGCA 59.254 45.455 5.46 5.46 0.00 4.41
1674 2947 1.252215 TGTCATGTTGCAGCATGGGG 61.252 55.000 34.17 16.28 44.54 4.96
1690 2963 1.272092 TGGGGCACAAGAAGATGAAGG 60.272 52.381 0.00 0.00 0.00 3.46
1726 2999 2.739379 GGAGCTGACAGCAACTAACTTC 59.261 50.000 28.43 14.29 45.56 3.01
1732 3005 4.621991 TGACAGCAACTAACTTCTCTCAC 58.378 43.478 0.00 0.00 0.00 3.51
1771 3132 3.665173 GCTCTCCTTGCGAAAACATAG 57.335 47.619 0.00 0.00 0.00 2.23
1772 3133 3.262420 GCTCTCCTTGCGAAAACATAGA 58.738 45.455 0.00 0.00 0.00 1.98
1773 3134 3.308323 GCTCTCCTTGCGAAAACATAGAG 59.692 47.826 0.00 0.00 33.88 2.43
1774 3135 4.499183 CTCTCCTTGCGAAAACATAGAGT 58.501 43.478 0.00 0.00 0.00 3.24
1775 3136 4.495422 TCTCCTTGCGAAAACATAGAGTC 58.505 43.478 0.00 0.00 0.00 3.36
1776 3137 4.220821 TCTCCTTGCGAAAACATAGAGTCT 59.779 41.667 0.00 0.00 0.00 3.24
1778 3139 4.021456 TCCTTGCGAAAACATAGAGTCTGA 60.021 41.667 1.86 0.00 0.00 3.27
1794 3330 7.410800 AGAGTCTGATCGTAATCGTAAGTAG 57.589 40.000 0.00 0.00 38.33 2.57
1800 3336 6.489675 TGATCGTAATCGTAAGTAGGAACAC 58.510 40.000 0.00 0.00 38.33 3.32
1805 3341 2.937591 TCGTAAGTAGGAACACGCAAG 58.062 47.619 0.00 0.00 41.46 4.01
1837 3373 1.050767 GCGACGACCGATATACTTGC 58.949 55.000 0.00 0.00 41.76 4.01
1844 3380 4.581824 ACGACCGATATACTTGCTCCTTTA 59.418 41.667 0.00 0.00 0.00 1.85
1850 3389 6.462487 CCGATATACTTGCTCCTTTACTTCCA 60.462 42.308 0.00 0.00 0.00 3.53
1903 3442 4.326766 CACGCACGCAGGGGTTTG 62.327 66.667 0.00 0.00 33.80 2.93
1904 3443 4.555709 ACGCACGCAGGGGTTTGA 62.556 61.111 0.00 0.00 33.80 2.69
1905 3444 3.055719 CGCACGCAGGGGTTTGAT 61.056 61.111 0.00 0.00 0.00 2.57
1906 3445 2.877691 GCACGCAGGGGTTTGATC 59.122 61.111 0.00 0.00 0.00 2.92
1907 3446 1.675641 GCACGCAGGGGTTTGATCT 60.676 57.895 0.00 0.00 0.00 2.75
1908 3447 1.926511 GCACGCAGGGGTTTGATCTG 61.927 60.000 0.00 0.00 0.00 2.90
1910 3449 3.190878 GCAGGGGTTTGATCTGCG 58.809 61.111 0.00 0.00 43.28 5.18
1911 3450 2.409870 GCAGGGGTTTGATCTGCGG 61.410 63.158 0.00 0.00 43.28 5.69
1915 3454 1.079405 GGGTTTGATCTGCGGACGA 60.079 57.895 0.00 0.00 0.00 4.20
1916 3455 1.359459 GGGTTTGATCTGCGGACGAC 61.359 60.000 0.00 0.00 0.00 4.34
1919 3458 1.868987 TTTGATCTGCGGACGACGGA 61.869 55.000 0.00 2.77 44.51 4.69
1938 3477 2.689471 GGAGGTTGATGCATGCATTGTA 59.311 45.455 32.60 19.52 36.70 2.41
1939 3478 3.243301 GGAGGTTGATGCATGCATTGTAG 60.243 47.826 32.60 0.00 36.70 2.74
1947 3486 2.094597 TGCATGCATTGTAGGCTGAAAC 60.095 45.455 18.46 0.00 0.00 2.78
1948 3487 2.789208 CATGCATTGTAGGCTGAAACG 58.211 47.619 0.00 0.00 0.00 3.60
1949 3488 1.164411 TGCATTGTAGGCTGAAACGG 58.836 50.000 0.00 0.00 0.00 4.44
1950 3489 1.271108 TGCATTGTAGGCTGAAACGGA 60.271 47.619 0.00 0.00 0.00 4.69
1951 3490 1.398390 GCATTGTAGGCTGAAACGGAG 59.602 52.381 0.00 0.00 0.00 4.63
1952 3491 1.398390 CATTGTAGGCTGAAACGGAGC 59.602 52.381 0.00 0.00 35.57 4.70
1953 3492 0.394938 TTGTAGGCTGAAACGGAGCA 59.605 50.000 0.00 0.00 38.27 4.26
1954 3493 0.037326 TGTAGGCTGAAACGGAGCAG 60.037 55.000 0.00 0.00 38.27 4.24
1955 3494 0.037232 GTAGGCTGAAACGGAGCAGT 60.037 55.000 0.00 0.00 38.27 4.40
1956 3495 0.037326 TAGGCTGAAACGGAGCAGTG 60.037 55.000 0.00 0.00 38.27 3.66
1957 3496 1.598130 GGCTGAAACGGAGCAGTGT 60.598 57.895 0.00 0.00 38.27 3.55
1958 3497 1.166531 GGCTGAAACGGAGCAGTGTT 61.167 55.000 0.00 0.00 38.27 3.32
1960 3499 1.065551 GCTGAAACGGAGCAGTGTTTT 59.934 47.619 0.00 0.00 38.35 2.43
1961 3500 2.854805 GCTGAAACGGAGCAGTGTTTTC 60.855 50.000 0.00 0.00 38.35 2.29
1962 3501 1.673920 TGAAACGGAGCAGTGTTTTCC 59.326 47.619 0.00 0.00 38.35 3.13
1963 3502 1.947456 GAAACGGAGCAGTGTTTTCCT 59.053 47.619 8.26 0.00 38.35 3.36
1964 3503 2.052782 AACGGAGCAGTGTTTTCCTT 57.947 45.000 8.26 0.00 0.00 3.36
1965 3504 2.052782 ACGGAGCAGTGTTTTCCTTT 57.947 45.000 8.26 0.00 0.00 3.11
1966 3505 2.375146 ACGGAGCAGTGTTTTCCTTTT 58.625 42.857 8.26 0.00 0.00 2.27
1967 3506 2.357952 ACGGAGCAGTGTTTTCCTTTTC 59.642 45.455 8.26 0.00 0.00 2.29
1973 3512 6.036083 GGAGCAGTGTTTTCCTTTTCTTTTTC 59.964 38.462 0.00 0.00 0.00 2.29
2003 3550 1.199327 TCGCGAAATCCGGAGCTATAG 59.801 52.381 11.34 0.00 39.04 1.31
2005 3552 2.607282 CGCGAAATCCGGAGCTATAGTT 60.607 50.000 11.34 0.00 39.04 2.24
2107 3654 2.160721 ACCATCTATGTGACCGACCT 57.839 50.000 0.00 0.00 0.00 3.85
2108 3655 2.467880 ACCATCTATGTGACCGACCTT 58.532 47.619 0.00 0.00 0.00 3.50
2109 3656 2.838202 ACCATCTATGTGACCGACCTTT 59.162 45.455 0.00 0.00 0.00 3.11
2110 3657 3.263425 ACCATCTATGTGACCGACCTTTT 59.737 43.478 0.00 0.00 0.00 2.27
2111 3658 4.261801 CCATCTATGTGACCGACCTTTTT 58.738 43.478 0.00 0.00 0.00 1.94
2134 3681 6.741448 TTTTAACACATTAGAAACGCAAGC 57.259 33.333 0.00 0.00 45.62 4.01
2135 3682 2.594529 ACACATTAGAAACGCAAGCG 57.405 45.000 13.50 13.50 46.03 4.68
2136 3683 1.250476 CACATTAGAAACGCAAGCGC 58.750 50.000 15.09 0.00 44.19 5.92
2137 3684 1.135972 CACATTAGAAACGCAAGCGCT 60.136 47.619 15.09 2.64 44.19 5.92
2138 3685 1.128692 ACATTAGAAACGCAAGCGCTC 59.871 47.619 12.06 11.33 44.19 5.03
2139 3686 1.128507 CATTAGAAACGCAAGCGCTCA 59.871 47.619 12.06 0.00 44.19 4.26
2140 3687 1.438651 TTAGAAACGCAAGCGCTCAT 58.561 45.000 12.06 0.00 44.19 2.90
2141 3688 2.287393 TAGAAACGCAAGCGCTCATA 57.713 45.000 12.06 0.34 44.19 2.15
2142 3689 1.656652 AGAAACGCAAGCGCTCATAT 58.343 45.000 12.06 0.00 44.19 1.78
2143 3690 2.821546 AGAAACGCAAGCGCTCATATA 58.178 42.857 12.06 0.00 44.19 0.86
2144 3691 3.194861 AGAAACGCAAGCGCTCATATAA 58.805 40.909 12.06 0.00 44.19 0.98
2145 3692 3.621268 AGAAACGCAAGCGCTCATATAAA 59.379 39.130 12.06 0.00 44.19 1.40
2146 3693 3.319238 AACGCAAGCGCTCATATAAAC 57.681 42.857 12.06 0.00 44.19 2.01
2147 3694 1.257936 ACGCAAGCGCTCATATAAACG 59.742 47.619 12.06 8.52 44.19 3.60
2154 3701 3.008456 CGCTCATATAAACGCGCATAC 57.992 47.619 5.73 0.00 39.11 2.39
2155 3702 2.407026 CGCTCATATAAACGCGCATACA 59.593 45.455 5.73 0.00 39.11 2.29
2156 3703 3.718036 CGCTCATATAAACGCGCATACAC 60.718 47.826 5.73 0.00 39.11 2.90
2157 3704 3.428870 GCTCATATAAACGCGCATACACT 59.571 43.478 5.73 0.00 0.00 3.55
2158 3705 4.084537 GCTCATATAAACGCGCATACACTT 60.085 41.667 5.73 0.00 0.00 3.16
2159 3706 5.118050 GCTCATATAAACGCGCATACACTTA 59.882 40.000 5.73 0.00 0.00 2.24
2160 3707 6.442487 TCATATAAACGCGCATACACTTAC 57.558 37.500 5.73 0.00 0.00 2.34
2161 3708 6.210796 TCATATAAACGCGCATACACTTACT 58.789 36.000 5.73 0.00 0.00 2.24
2162 3709 6.361481 TCATATAAACGCGCATACACTTACTC 59.639 38.462 5.73 0.00 0.00 2.59
2163 3710 2.357327 AACGCGCATACACTTACTCA 57.643 45.000 5.73 0.00 0.00 3.41
2164 3711 1.625616 ACGCGCATACACTTACTCAC 58.374 50.000 5.73 0.00 0.00 3.51
2165 3712 1.068125 ACGCGCATACACTTACTCACA 60.068 47.619 5.73 0.00 0.00 3.58
2166 3713 2.193447 CGCGCATACACTTACTCACAT 58.807 47.619 8.75 0.00 0.00 3.21
2167 3714 2.034591 CGCGCATACACTTACTCACATG 60.035 50.000 8.75 0.00 0.00 3.21
2168 3715 3.186909 GCGCATACACTTACTCACATGA 58.813 45.455 0.30 0.00 0.00 3.07
2169 3716 3.616821 GCGCATACACTTACTCACATGAA 59.383 43.478 0.30 0.00 0.00 2.57
2170 3717 4.492570 GCGCATACACTTACTCACATGAAC 60.493 45.833 0.30 0.00 0.00 3.18
2171 3718 4.259411 CGCATACACTTACTCACATGAACG 60.259 45.833 0.00 0.00 0.00 3.95
2172 3719 4.492570 GCATACACTTACTCACATGAACGC 60.493 45.833 0.00 0.00 0.00 4.84
2173 3720 3.106242 ACACTTACTCACATGAACGCA 57.894 42.857 0.00 0.00 0.00 5.24
2174 3721 2.800544 ACACTTACTCACATGAACGCAC 59.199 45.455 0.00 0.00 0.00 5.34
2175 3722 2.799978 CACTTACTCACATGAACGCACA 59.200 45.455 0.00 0.00 0.00 4.57
2176 3723 3.433274 CACTTACTCACATGAACGCACAT 59.567 43.478 0.00 0.00 0.00 3.21
2177 3724 4.625311 CACTTACTCACATGAACGCACATA 59.375 41.667 0.00 0.00 0.00 2.29
2178 3725 4.625742 ACTTACTCACATGAACGCACATAC 59.374 41.667 0.00 0.00 0.00 2.39
2179 3726 1.992667 ACTCACATGAACGCACATACG 59.007 47.619 0.00 0.00 39.50 3.06
2180 3727 0.718904 TCACATGAACGCACATACGC 59.281 50.000 0.00 0.00 36.19 4.42
2181 3728 0.441921 CACATGAACGCACATACGCA 59.558 50.000 0.00 0.00 36.19 5.24
2182 3729 0.442310 ACATGAACGCACATACGCAC 59.558 50.000 0.00 0.00 36.19 5.34
2183 3730 0.441921 CATGAACGCACATACGCACA 59.558 50.000 0.00 0.00 36.19 4.57
2184 3731 0.442310 ATGAACGCACATACGCACAC 59.558 50.000 0.00 0.00 36.19 3.82
2185 3732 1.131826 GAACGCACATACGCACACC 59.868 57.895 0.00 0.00 36.19 4.16
2186 3733 2.235536 GAACGCACATACGCACACCC 62.236 60.000 0.00 0.00 36.19 4.61
2187 3734 3.496131 CGCACATACGCACACCCC 61.496 66.667 0.00 0.00 0.00 4.95
2188 3735 2.359354 GCACATACGCACACCCCA 60.359 61.111 0.00 0.00 0.00 4.96
2189 3736 1.748879 GCACATACGCACACCCCAT 60.749 57.895 0.00 0.00 0.00 4.00
2190 3737 1.714899 GCACATACGCACACCCCATC 61.715 60.000 0.00 0.00 0.00 3.51
2191 3738 0.107703 CACATACGCACACCCCATCT 60.108 55.000 0.00 0.00 0.00 2.90
2192 3739 0.178068 ACATACGCACACCCCATCTC 59.822 55.000 0.00 0.00 0.00 2.75
2193 3740 0.465705 CATACGCACACCCCATCTCT 59.534 55.000 0.00 0.00 0.00 3.10
2194 3741 1.686587 CATACGCACACCCCATCTCTA 59.313 52.381 0.00 0.00 0.00 2.43
2195 3742 2.082140 TACGCACACCCCATCTCTAT 57.918 50.000 0.00 0.00 0.00 1.98
2196 3743 0.465705 ACGCACACCCCATCTCTATG 59.534 55.000 0.00 0.00 0.00 2.23
2197 3744 0.752658 CGCACACCCCATCTCTATGA 59.247 55.000 0.00 0.00 34.84 2.15
2198 3745 1.269988 CGCACACCCCATCTCTATGAG 60.270 57.143 0.00 0.00 34.84 2.90
2199 3746 1.542108 GCACACCCCATCTCTATGAGC 60.542 57.143 0.00 0.00 34.84 4.26
2200 3747 1.764723 CACACCCCATCTCTATGAGCA 59.235 52.381 0.00 0.00 34.84 4.26
2201 3748 1.765314 ACACCCCATCTCTATGAGCAC 59.235 52.381 0.00 0.00 34.84 4.40
2202 3749 1.071385 CACCCCATCTCTATGAGCACC 59.929 57.143 0.00 0.00 34.84 5.01
2203 3750 1.061812 ACCCCATCTCTATGAGCACCT 60.062 52.381 0.00 0.00 34.84 4.00
2204 3751 1.622811 CCCCATCTCTATGAGCACCTC 59.377 57.143 0.00 0.00 34.84 3.85
2205 3752 1.622811 CCCATCTCTATGAGCACCTCC 59.377 57.143 0.00 0.00 34.84 4.30
2206 3753 1.271934 CCATCTCTATGAGCACCTCCG 59.728 57.143 0.00 0.00 34.84 4.63
2207 3754 2.234143 CATCTCTATGAGCACCTCCGA 58.766 52.381 0.00 0.00 34.84 4.55
2208 3755 1.974265 TCTCTATGAGCACCTCCGAG 58.026 55.000 0.00 0.00 0.00 4.63
2209 3756 1.490910 TCTCTATGAGCACCTCCGAGA 59.509 52.381 0.00 0.00 30.67 4.04
2210 3757 1.879380 CTCTATGAGCACCTCCGAGAG 59.121 57.143 0.00 6.27 34.42 3.20
2211 3758 1.490910 TCTATGAGCACCTCCGAGAGA 59.509 52.381 0.00 0.00 0.00 3.10
2212 3759 2.092375 TCTATGAGCACCTCCGAGAGAA 60.092 50.000 0.00 0.00 0.00 2.87
2213 3760 1.786937 ATGAGCACCTCCGAGAGAAT 58.213 50.000 0.00 0.00 0.00 2.40
2214 3761 0.820226 TGAGCACCTCCGAGAGAATG 59.180 55.000 0.00 2.80 0.00 2.67
2215 3762 1.107114 GAGCACCTCCGAGAGAATGA 58.893 55.000 0.00 0.00 0.00 2.57
2216 3763 1.066908 GAGCACCTCCGAGAGAATGAG 59.933 57.143 0.00 0.00 0.00 2.90
2217 3764 0.529555 GCACCTCCGAGAGAATGAGC 60.530 60.000 0.00 0.00 0.00 4.26
2218 3765 0.103937 CACCTCCGAGAGAATGAGCC 59.896 60.000 0.00 0.00 0.00 4.70
2219 3766 1.361993 CCTCCGAGAGAATGAGCCG 59.638 63.158 0.00 0.00 0.00 5.52
2220 3767 1.361993 CTCCGAGAGAATGAGCCGG 59.638 63.158 0.00 0.00 41.36 6.13
2221 3768 2.279784 CCGAGAGAATGAGCCGGC 60.280 66.667 21.89 21.89 33.47 6.13
2222 3769 2.496341 CGAGAGAATGAGCCGGCA 59.504 61.111 31.54 9.64 0.00 5.69
2223 3770 1.068753 CGAGAGAATGAGCCGGCAT 59.931 57.895 31.54 12.05 0.00 4.40
2224 3771 0.315251 CGAGAGAATGAGCCGGCATA 59.685 55.000 31.54 17.84 0.00 3.14
2225 3772 1.067283 CGAGAGAATGAGCCGGCATAT 60.067 52.381 31.54 19.46 0.00 1.78
2226 3773 2.615869 GAGAGAATGAGCCGGCATATC 58.384 52.381 31.54 18.63 0.00 1.63
2227 3774 1.973515 AGAGAATGAGCCGGCATATCA 59.026 47.619 31.54 24.11 0.00 2.15
2228 3775 2.570752 AGAGAATGAGCCGGCATATCAT 59.429 45.455 31.54 25.29 35.21 2.45
2229 3776 2.935201 GAGAATGAGCCGGCATATCATC 59.065 50.000 31.54 19.98 32.59 2.92
2230 3777 2.570752 AGAATGAGCCGGCATATCATCT 59.429 45.455 31.54 21.61 32.59 2.90
2231 3778 3.008813 AGAATGAGCCGGCATATCATCTT 59.991 43.478 31.54 15.40 32.59 2.40
2232 3779 2.174363 TGAGCCGGCATATCATCTTG 57.826 50.000 31.54 0.00 0.00 3.02
2233 3780 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
2234 3781 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
2235 3782 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
2236 3783 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
2237 3784 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
2238 3785 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
2239 3786 4.217118 GCCGGCATATCATCTTGAGATTTT 59.783 41.667 24.80 0.00 31.21 1.82
2240 3787 5.412594 GCCGGCATATCATCTTGAGATTTTA 59.587 40.000 24.80 0.00 31.21 1.52
2241 3788 6.094603 GCCGGCATATCATCTTGAGATTTTAT 59.905 38.462 24.80 0.00 31.21 1.40
2242 3789 7.470079 CCGGCATATCATCTTGAGATTTTATG 58.530 38.462 0.00 11.83 33.85 1.90
2243 3790 7.335171 CCGGCATATCATCTTGAGATTTTATGA 59.665 37.037 16.61 4.70 33.21 2.15
2244 3791 8.724229 CGGCATATCATCTTGAGATTTTATGAA 58.276 33.333 16.61 0.00 33.21 2.57
2250 3797 8.498054 TCATCTTGAGATTTTATGAAGTCACC 57.502 34.615 0.00 0.00 31.21 4.02
2251 3798 6.968131 TCTTGAGATTTTATGAAGTCACCG 57.032 37.500 0.00 0.00 0.00 4.94
2252 3799 6.464222 TCTTGAGATTTTATGAAGTCACCGT 58.536 36.000 0.00 0.00 0.00 4.83
2253 3800 7.608153 TCTTGAGATTTTATGAAGTCACCGTA 58.392 34.615 0.00 0.00 0.00 4.02
2254 3801 7.759886 TCTTGAGATTTTATGAAGTCACCGTAG 59.240 37.037 0.00 0.00 0.00 3.51
2255 3802 7.165460 TGAGATTTTATGAAGTCACCGTAGA 57.835 36.000 0.00 0.00 0.00 2.59
2256 3803 7.782049 TGAGATTTTATGAAGTCACCGTAGAT 58.218 34.615 0.00 0.00 0.00 1.98
2257 3804 7.706607 TGAGATTTTATGAAGTCACCGTAGATG 59.293 37.037 0.00 0.00 0.00 2.90
2258 3805 7.556844 AGATTTTATGAAGTCACCGTAGATGT 58.443 34.615 0.00 0.00 0.00 3.06
2259 3806 7.707035 AGATTTTATGAAGTCACCGTAGATGTC 59.293 37.037 0.00 0.00 0.00 3.06
2260 3807 6.525578 TTTATGAAGTCACCGTAGATGTCT 57.474 37.500 0.00 0.00 0.00 3.41
2261 3808 4.640789 ATGAAGTCACCGTAGATGTCTC 57.359 45.455 0.00 0.00 0.00 3.36
2262 3809 2.418976 TGAAGTCACCGTAGATGTCTCG 59.581 50.000 0.00 0.00 0.00 4.04
2263 3810 2.110901 AGTCACCGTAGATGTCTCGT 57.889 50.000 0.00 0.00 0.00 4.18
2264 3811 3.257469 AGTCACCGTAGATGTCTCGTA 57.743 47.619 0.00 0.00 0.00 3.43
2265 3812 3.196463 AGTCACCGTAGATGTCTCGTAG 58.804 50.000 0.00 0.00 0.00 3.51
2266 3813 2.935201 GTCACCGTAGATGTCTCGTAGT 59.065 50.000 0.00 0.00 0.00 2.73
2267 3814 3.001127 GTCACCGTAGATGTCTCGTAGTC 59.999 52.174 0.00 0.00 0.00 2.59
2268 3815 2.033917 CACCGTAGATGTCTCGTAGTCG 60.034 54.545 0.00 0.00 38.55 4.18
2269 3816 2.159184 ACCGTAGATGTCTCGTAGTCGA 60.159 50.000 0.00 0.00 44.12 4.20
2270 3817 2.218302 CCGTAGATGTCTCGTAGTCGAC 59.782 54.545 7.70 7.70 41.35 4.20
2290 3837 2.868253 GGAACGTCTTCCCCCATTG 58.132 57.895 0.00 0.00 40.38 2.82
2291 3838 0.326927 GGAACGTCTTCCCCCATTGA 59.673 55.000 0.00 0.00 40.38 2.57
2292 3839 1.271707 GGAACGTCTTCCCCCATTGAA 60.272 52.381 0.00 0.00 40.38 2.69
2293 3840 2.510613 GAACGTCTTCCCCCATTGAAA 58.489 47.619 0.00 0.00 0.00 2.69
2294 3841 2.200373 ACGTCTTCCCCCATTGAAAG 57.800 50.000 0.00 0.00 0.00 2.62
2295 3842 1.423921 ACGTCTTCCCCCATTGAAAGT 59.576 47.619 0.00 0.00 0.00 2.66
2296 3843 1.812571 CGTCTTCCCCCATTGAAAGTG 59.187 52.381 0.00 0.00 0.00 3.16
2297 3844 2.814097 CGTCTTCCCCCATTGAAAGTGT 60.814 50.000 0.00 0.00 0.00 3.55
2298 3845 3.558321 CGTCTTCCCCCATTGAAAGTGTA 60.558 47.826 0.00 0.00 0.00 2.90
2299 3846 4.600062 GTCTTCCCCCATTGAAAGTGTAT 58.400 43.478 0.00 0.00 0.00 2.29
2300 3847 4.640647 GTCTTCCCCCATTGAAAGTGTATC 59.359 45.833 0.00 0.00 0.00 2.24
2301 3848 3.275617 TCCCCCATTGAAAGTGTATCG 57.724 47.619 0.00 0.00 0.00 2.92
2302 3849 2.574369 TCCCCCATTGAAAGTGTATCGT 59.426 45.455 0.00 0.00 0.00 3.73
2303 3850 2.943033 CCCCCATTGAAAGTGTATCGTC 59.057 50.000 0.00 0.00 0.00 4.20
2304 3851 2.607635 CCCCATTGAAAGTGTATCGTCG 59.392 50.000 0.00 0.00 0.00 5.12
2305 3852 2.607635 CCCATTGAAAGTGTATCGTCGG 59.392 50.000 0.00 0.00 0.00 4.79
2306 3853 3.517602 CCATTGAAAGTGTATCGTCGGA 58.482 45.455 0.00 0.00 0.00 4.55
2307 3854 3.930229 CCATTGAAAGTGTATCGTCGGAA 59.070 43.478 0.00 0.00 0.00 4.30
2308 3855 4.390603 CCATTGAAAGTGTATCGTCGGAAA 59.609 41.667 0.00 0.00 0.00 3.13
2309 3856 5.064707 CCATTGAAAGTGTATCGTCGGAAAT 59.935 40.000 0.00 0.00 0.00 2.17
2310 3857 6.256975 CCATTGAAAGTGTATCGTCGGAAATA 59.743 38.462 0.00 0.00 0.00 1.40
2311 3858 6.636666 TTGAAAGTGTATCGTCGGAAATAC 57.363 37.500 0.00 5.33 0.00 1.89
2312 3859 5.957798 TGAAAGTGTATCGTCGGAAATACT 58.042 37.500 11.09 0.00 31.11 2.12
2313 3860 5.803461 TGAAAGTGTATCGTCGGAAATACTG 59.197 40.000 11.09 0.00 31.11 2.74
2314 3861 5.571784 AAGTGTATCGTCGGAAATACTGA 57.428 39.130 11.09 0.00 31.11 3.41
2315 3862 5.571784 AGTGTATCGTCGGAAATACTGAA 57.428 39.130 11.09 0.00 35.49 3.02
2316 3863 5.957798 AGTGTATCGTCGGAAATACTGAAA 58.042 37.500 11.09 0.00 35.49 2.69
2317 3864 6.570692 AGTGTATCGTCGGAAATACTGAAAT 58.429 36.000 11.09 0.00 35.49 2.17
2318 3865 7.709947 AGTGTATCGTCGGAAATACTGAAATA 58.290 34.615 11.09 0.00 35.49 1.40
2319 3866 8.192774 AGTGTATCGTCGGAAATACTGAAATAA 58.807 33.333 11.09 0.00 35.49 1.40
2320 3867 8.810427 GTGTATCGTCGGAAATACTGAAATAAA 58.190 33.333 11.09 0.00 35.49 1.40
2321 3868 9.537192 TGTATCGTCGGAAATACTGAAATAAAT 57.463 29.630 11.09 0.00 35.49 1.40
2324 3871 8.481974 TCGTCGGAAATACTGAAATAAATTCA 57.518 30.769 0.00 0.00 45.71 2.57
2338 3885 9.236691 TGAAATAAATTCAAGATAAATGCGAGC 57.763 29.630 0.00 0.00 44.94 5.03
2339 3886 9.236691 GAAATAAATTCAAGATAAATGCGAGCA 57.763 29.630 0.00 0.00 37.99 4.26
2340 3887 9.754382 AAATAAATTCAAGATAAATGCGAGCAT 57.246 25.926 4.52 4.52 38.46 3.79
2341 3888 8.961294 ATAAATTCAAGATAAATGCGAGCATC 57.039 30.769 11.26 0.00 35.31 3.91
2342 3889 6.381481 AATTCAAGATAAATGCGAGCATCA 57.619 33.333 11.26 3.11 35.31 3.07
2343 3890 5.413969 TTCAAGATAAATGCGAGCATCAG 57.586 39.130 11.26 0.00 35.31 2.90
2344 3891 3.811497 TCAAGATAAATGCGAGCATCAGG 59.189 43.478 11.26 0.00 35.31 3.86
2345 3892 3.758755 AGATAAATGCGAGCATCAGGA 57.241 42.857 11.26 0.00 35.31 3.86
2346 3893 3.397482 AGATAAATGCGAGCATCAGGAC 58.603 45.455 11.26 3.22 35.31 3.85
2347 3894 2.988010 TAAATGCGAGCATCAGGACT 57.012 45.000 11.26 0.00 35.31 3.85
2348 3895 2.119801 AAATGCGAGCATCAGGACTT 57.880 45.000 11.26 0.00 35.31 3.01
2349 3896 2.988010 AATGCGAGCATCAGGACTTA 57.012 45.000 11.26 0.00 35.31 2.24
2350 3897 2.988010 ATGCGAGCATCAGGACTTAA 57.012 45.000 4.52 0.00 33.17 1.85
2351 3898 2.760634 TGCGAGCATCAGGACTTAAA 57.239 45.000 0.00 0.00 33.17 1.52
2352 3899 2.346803 TGCGAGCATCAGGACTTAAAC 58.653 47.619 0.00 0.00 33.17 2.01
2353 3900 2.028112 TGCGAGCATCAGGACTTAAACT 60.028 45.455 0.00 0.00 33.17 2.66
2354 3901 3.003480 GCGAGCATCAGGACTTAAACTT 58.997 45.455 0.00 0.00 33.17 2.66
2355 3902 3.437049 GCGAGCATCAGGACTTAAACTTT 59.563 43.478 0.00 0.00 33.17 2.66
2356 3903 4.670221 GCGAGCATCAGGACTTAAACTTTG 60.670 45.833 0.00 0.00 33.17 2.77
2357 3904 4.690748 CGAGCATCAGGACTTAAACTTTGA 59.309 41.667 0.00 0.00 33.17 2.69
2358 3905 5.352569 CGAGCATCAGGACTTAAACTTTGAT 59.647 40.000 0.00 0.00 33.17 2.57
2359 3906 6.506500 AGCATCAGGACTTAAACTTTGATG 57.493 37.500 7.67 7.67 42.80 3.07
2360 3907 6.240894 AGCATCAGGACTTAAACTTTGATGA 58.759 36.000 14.44 0.00 42.64 2.92
2361 3908 6.373774 AGCATCAGGACTTAAACTTTGATGAG 59.626 38.462 14.44 0.00 42.64 2.90
2362 3909 6.549952 CATCAGGACTTAAACTTTGATGAGC 58.450 40.000 6.45 0.00 42.64 4.26
2363 3910 5.620206 TCAGGACTTAAACTTTGATGAGCA 58.380 37.500 0.00 0.00 0.00 4.26
2364 3911 5.702670 TCAGGACTTAAACTTTGATGAGCAG 59.297 40.000 0.00 0.00 0.00 4.24
2365 3912 5.006386 AGGACTTAAACTTTGATGAGCAGG 58.994 41.667 0.00 0.00 0.00 4.85
2366 3913 4.156739 GGACTTAAACTTTGATGAGCAGGG 59.843 45.833 0.00 0.00 0.00 4.45
2367 3914 4.082125 ACTTAAACTTTGATGAGCAGGGG 58.918 43.478 0.00 0.00 0.00 4.79
2368 3915 2.978156 AAACTTTGATGAGCAGGGGA 57.022 45.000 0.00 0.00 0.00 4.81
2369 3916 3.463048 AAACTTTGATGAGCAGGGGAT 57.537 42.857 0.00 0.00 0.00 3.85
2370 3917 4.591321 AAACTTTGATGAGCAGGGGATA 57.409 40.909 0.00 0.00 0.00 2.59
2371 3918 4.803329 AACTTTGATGAGCAGGGGATAT 57.197 40.909 0.00 0.00 0.00 1.63
2372 3919 4.363991 ACTTTGATGAGCAGGGGATATC 57.636 45.455 0.00 0.00 0.00 1.63
2373 3920 3.718434 ACTTTGATGAGCAGGGGATATCA 59.282 43.478 4.83 0.00 0.00 2.15
2374 3921 3.777106 TTGATGAGCAGGGGATATCAC 57.223 47.619 4.83 0.00 0.00 3.06
2375 3922 2.981921 TGATGAGCAGGGGATATCACT 58.018 47.619 4.65 0.00 0.00 3.41
2376 3923 2.636403 TGATGAGCAGGGGATATCACTG 59.364 50.000 17.64 17.64 35.40 3.66
2377 3924 2.180946 TGAGCAGGGGATATCACTGT 57.819 50.000 20.90 12.02 34.79 3.55
2378 3925 1.764723 TGAGCAGGGGATATCACTGTG 59.235 52.381 20.90 13.40 34.79 3.66
2379 3926 0.471617 AGCAGGGGATATCACTGTGC 59.528 55.000 19.44 19.44 34.79 4.57
2380 3927 0.181114 GCAGGGGATATCACTGTGCA 59.819 55.000 21.16 0.00 34.79 4.57
2381 3928 1.959042 CAGGGGATATCACTGTGCAC 58.041 55.000 10.75 10.75 0.00 4.57
2382 3929 0.839946 AGGGGATATCACTGTGCACC 59.160 55.000 15.69 0.00 0.00 5.01
2383 3930 0.839946 GGGGATATCACTGTGCACCT 59.160 55.000 15.69 0.00 0.00 4.00
2384 3931 2.047061 GGGGATATCACTGTGCACCTA 58.953 52.381 15.69 0.00 0.00 3.08
2385 3932 2.438021 GGGGATATCACTGTGCACCTAA 59.562 50.000 15.69 0.00 0.00 2.69
2386 3933 3.467803 GGGATATCACTGTGCACCTAAC 58.532 50.000 15.69 0.00 0.00 2.34
2387 3934 3.467803 GGATATCACTGTGCACCTAACC 58.532 50.000 15.69 3.54 0.00 2.85
2388 3935 3.118408 GGATATCACTGTGCACCTAACCA 60.118 47.826 15.69 0.00 0.00 3.67
2389 3936 4.444876 GGATATCACTGTGCACCTAACCAT 60.445 45.833 15.69 0.87 0.00 3.55
2390 3937 2.472695 TCACTGTGCACCTAACCATC 57.527 50.000 15.69 0.00 0.00 3.51
2391 3938 1.977854 TCACTGTGCACCTAACCATCT 59.022 47.619 15.69 0.00 0.00 2.90
2392 3939 2.028112 TCACTGTGCACCTAACCATCTC 60.028 50.000 15.69 0.00 0.00 2.75
2393 3940 1.977854 ACTGTGCACCTAACCATCTCA 59.022 47.619 15.69 0.00 0.00 3.27
2394 3941 2.371841 ACTGTGCACCTAACCATCTCAA 59.628 45.455 15.69 0.00 0.00 3.02
2395 3942 2.744202 CTGTGCACCTAACCATCTCAAC 59.256 50.000 15.69 0.00 0.00 3.18
2396 3943 2.371841 TGTGCACCTAACCATCTCAACT 59.628 45.455 15.69 0.00 0.00 3.16
2397 3944 3.580895 TGTGCACCTAACCATCTCAACTA 59.419 43.478 15.69 0.00 0.00 2.24
2398 3945 3.933332 GTGCACCTAACCATCTCAACTAC 59.067 47.826 5.22 0.00 0.00 2.73
2399 3946 3.580895 TGCACCTAACCATCTCAACTACA 59.419 43.478 0.00 0.00 0.00 2.74
2400 3947 4.184629 GCACCTAACCATCTCAACTACAG 58.815 47.826 0.00 0.00 0.00 2.74
2401 3948 4.759782 CACCTAACCATCTCAACTACAGG 58.240 47.826 0.00 0.00 0.00 4.00
2402 3949 4.223032 CACCTAACCATCTCAACTACAGGT 59.777 45.833 0.00 0.00 34.24 4.00
2403 3950 4.844655 ACCTAACCATCTCAACTACAGGTT 59.155 41.667 0.00 0.00 41.74 3.50
2415 3962 4.612264 ACTACAGGTTGGTTCGTTATGT 57.388 40.909 0.00 0.00 0.00 2.29
2416 3963 4.312443 ACTACAGGTTGGTTCGTTATGTG 58.688 43.478 0.00 0.00 0.00 3.21
2417 3964 3.478857 ACAGGTTGGTTCGTTATGTGA 57.521 42.857 0.00 0.00 0.00 3.58
2418 3965 3.135994 ACAGGTTGGTTCGTTATGTGAC 58.864 45.455 0.00 0.00 0.00 3.67
2419 3966 2.482721 CAGGTTGGTTCGTTATGTGACC 59.517 50.000 0.00 0.00 0.00 4.02
2420 3967 1.461897 GGTTGGTTCGTTATGTGACCG 59.538 52.381 0.00 0.00 34.90 4.79
2421 3968 2.406130 GTTGGTTCGTTATGTGACCGA 58.594 47.619 0.00 0.00 34.90 4.69
2422 3969 2.068837 TGGTTCGTTATGTGACCGAC 57.931 50.000 0.00 0.00 34.90 4.79
2431 3978 4.033587 CGTTATGTGACCGACCCTAAATTG 59.966 45.833 0.00 0.00 0.00 2.32
2510 4058 6.025749 AGTTAAGTCTCGACACATTCATGA 57.974 37.500 0.00 0.00 0.00 3.07
2512 4060 2.886081 AGTCTCGACACATTCATGAGC 58.114 47.619 0.00 0.00 0.00 4.26
2514 4062 3.696548 AGTCTCGACACATTCATGAGCTA 59.303 43.478 0.00 0.00 0.00 3.32
2539 4087 4.842091 GCCCATTGCTCGCTTGCG 62.842 66.667 8.87 8.87 36.87 4.85
2540 4088 4.842091 CCCATTGCTCGCTTGCGC 62.842 66.667 10.38 0.00 35.36 6.09
2551 4099 2.792543 CTTGCGCGTGCTTTGACG 60.793 61.111 23.16 0.00 43.34 4.35
2556 4105 1.298041 CGCGTGCTTTGACGGTTTT 60.298 52.632 0.00 0.00 39.81 2.43
2603 4152 3.324556 CCCATTGACCAGTTTGACCATTT 59.675 43.478 0.00 0.00 0.00 2.32
2604 4153 4.526262 CCCATTGACCAGTTTGACCATTTA 59.474 41.667 0.00 0.00 0.00 1.40
2636 4185 8.876275 TGAAGAAAGTTCATGGAAATGAAAAG 57.124 30.769 2.86 0.00 41.61 2.27
2638 4187 7.365497 AGAAAGTTCATGGAAATGAAAAGGT 57.635 32.000 2.86 0.00 41.61 3.50
2642 4191 7.123355 AGTTCATGGAAATGAAAAGGTTTCA 57.877 32.000 5.92 5.92 41.61 2.69
2645 4194 8.925700 GTTCATGGAAATGAAAAGGTTTCATAC 58.074 33.333 14.76 12.02 41.61 2.39
2653 4202 9.492973 AAATGAAAAGGTTTCATACATTTGGAG 57.507 29.630 14.76 0.00 39.64 3.86
2657 4206 9.541143 GAAAAGGTTTCATACATTTGGAGAAAA 57.459 29.630 0.00 0.00 39.64 2.29
2658 4207 9.898152 AAAAGGTTTCATACATTTGGAGAAAAA 57.102 25.926 0.00 0.00 39.64 1.94
2663 4212 8.638565 GTTTCATACATTTGGAGAAAAATCACG 58.361 33.333 0.00 0.00 30.91 4.35
2665 4214 8.279970 TCATACATTTGGAGAAAAATCACGAT 57.720 30.769 0.00 0.00 0.00 3.73
2667 4216 9.013490 CATACATTTGGAGAAAAATCACGATTC 57.987 33.333 0.00 0.00 0.00 2.52
2669 4218 6.015519 ACATTTGGAGAAAAATCACGATTCCA 60.016 34.615 0.00 0.00 0.00 3.53
2671 4220 6.398234 TTGGAGAAAAATCACGATTCCAAA 57.602 33.333 7.39 0.00 31.13 3.28
2672 4221 6.588719 TGGAGAAAAATCACGATTCCAAAT 57.411 33.333 0.00 0.00 0.00 2.32
2673 4222 6.991938 TGGAGAAAAATCACGATTCCAAATT 58.008 32.000 0.00 0.00 0.00 1.82
2676 4225 9.418045 GGAGAAAAATCACGATTCCAAATTTTA 57.582 29.630 0.00 0.00 31.29 1.52
2686 4235 9.980780 CACGATTCCAAATTTTAAAAAGTTTGT 57.019 25.926 18.72 7.06 41.31 2.83
2687 4236 9.980780 ACGATTCCAAATTTTAAAAAGTTTGTG 57.019 25.926 18.72 13.13 41.31 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.054021 TGGTTTGAGTCCTCACCATCA 58.946 47.619 0.00 0.00 39.66 3.07
1 2 2.859165 TGGTTTGAGTCCTCACCATC 57.141 50.000 0.00 0.00 39.66 3.51
2 3 3.222603 GTTTGGTTTGAGTCCTCACCAT 58.777 45.455 7.29 0.00 39.66 3.55
3 4 2.025793 TGTTTGGTTTGAGTCCTCACCA 60.026 45.455 0.00 0.00 39.66 4.17
4 5 2.650322 TGTTTGGTTTGAGTCCTCACC 58.350 47.619 0.00 0.00 39.66 4.02
5 6 3.550842 GCATGTTTGGTTTGAGTCCTCAC 60.551 47.826 0.00 0.00 39.66 3.51
6 7 2.622942 GCATGTTTGGTTTGAGTCCTCA 59.377 45.455 0.00 0.00 37.91 3.86
7 8 2.887152 AGCATGTTTGGTTTGAGTCCTC 59.113 45.455 0.00 0.00 0.00 3.71
8 9 2.887152 GAGCATGTTTGGTTTGAGTCCT 59.113 45.455 0.00 0.00 32.62 3.85
9 10 2.887152 AGAGCATGTTTGGTTTGAGTCC 59.113 45.455 0.00 0.00 32.62 3.85
10 11 4.574599 AAGAGCATGTTTGGTTTGAGTC 57.425 40.909 0.00 0.00 32.62 3.36
11 12 4.685924 CAAAGAGCATGTTTGGTTTGAGT 58.314 39.130 0.00 0.00 44.68 3.41
20 21 3.476552 TCGAAGGACAAAGAGCATGTTT 58.523 40.909 0.00 0.00 28.09 2.83
21 22 3.126001 TCGAAGGACAAAGAGCATGTT 57.874 42.857 0.00 0.00 0.00 2.71
22 23 2.839486 TCGAAGGACAAAGAGCATGT 57.161 45.000 0.00 0.00 0.00 3.21
23 24 3.730061 GCATTCGAAGGACAAAGAGCATG 60.730 47.826 15.01 0.00 0.00 4.06
24 25 2.421424 GCATTCGAAGGACAAAGAGCAT 59.579 45.455 15.01 0.00 0.00 3.79
25 26 1.806542 GCATTCGAAGGACAAAGAGCA 59.193 47.619 15.01 0.00 0.00 4.26
26 27 1.806542 TGCATTCGAAGGACAAAGAGC 59.193 47.619 15.01 2.21 0.00 4.09
27 28 4.023707 AGTTTGCATTCGAAGGACAAAGAG 60.024 41.667 22.95 1.65 31.39 2.85
28 29 3.882888 AGTTTGCATTCGAAGGACAAAGA 59.117 39.130 22.95 8.88 31.39 2.52
29 30 3.976942 CAGTTTGCATTCGAAGGACAAAG 59.023 43.478 22.95 13.98 31.39 2.77
39 40 7.590689 AAAATTTATTTTGGCAGTTTGCATTCG 59.409 29.630 3.24 0.00 39.67 3.34
40 41 8.800231 AAAATTTATTTTGGCAGTTTGCATTC 57.200 26.923 3.24 0.00 39.67 2.67
66 67 9.529325 CATACTTCAGTAAAAAGATATCGTCCA 57.471 33.333 0.00 0.00 33.76 4.02
108 109 6.879276 TTTGGTCATAATGGTACGTTTGAA 57.121 33.333 0.00 0.00 0.00 2.69
128 129 6.586082 ACTTTTACATCGCTAGCCAAAATTTG 59.414 34.615 9.66 0.00 0.00 2.32
172 173 6.376978 GTCAACTGAACAAGATTGAATCCAG 58.623 40.000 0.75 4.42 31.84 3.86
181 182 5.192927 TGAACAAGGTCAACTGAACAAGAT 58.807 37.500 0.00 0.00 33.22 2.40
216 217 9.874205 AAATTAAAGTTGTGCTGTTATATGCAT 57.126 25.926 3.79 3.79 41.45 3.96
228 229 7.754625 TCGACCCTTATAAATTAAAGTTGTGC 58.245 34.615 0.00 0.00 0.00 4.57
271 272 9.872757 TCAAAATAAGTGACGTGAATTTAGTTC 57.127 29.630 0.00 0.00 37.35 3.01
288 289 4.631813 CCACCCTCTTCGTCTCAAAATAAG 59.368 45.833 0.00 0.00 0.00 1.73
297 298 4.161754 CCTTATAAACCACCCTCTTCGTCT 59.838 45.833 0.00 0.00 0.00 4.18
300 301 3.118371 AGCCTTATAAACCACCCTCTTCG 60.118 47.826 0.00 0.00 0.00 3.79
305 306 4.016962 TCCTAGCCTTATAAACCACCCT 57.983 45.455 0.00 0.00 0.00 4.34
307 308 5.307196 TCAGATCCTAGCCTTATAAACCACC 59.693 44.000 0.00 0.00 0.00 4.61
310 311 5.544562 ACCTCAGATCCTAGCCTTATAAACC 59.455 44.000 0.00 0.00 0.00 3.27
311 312 6.570764 CGACCTCAGATCCTAGCCTTATAAAC 60.571 46.154 0.00 0.00 0.00 2.01
312 313 5.477291 CGACCTCAGATCCTAGCCTTATAAA 59.523 44.000 0.00 0.00 0.00 1.40
313 314 5.010933 CGACCTCAGATCCTAGCCTTATAA 58.989 45.833 0.00 0.00 0.00 0.98
314 315 4.288887 TCGACCTCAGATCCTAGCCTTATA 59.711 45.833 0.00 0.00 0.00 0.98
315 316 3.074687 TCGACCTCAGATCCTAGCCTTAT 59.925 47.826 0.00 0.00 0.00 1.73
316 317 2.442126 TCGACCTCAGATCCTAGCCTTA 59.558 50.000 0.00 0.00 0.00 2.69
318 319 0.847373 TCGACCTCAGATCCTAGCCT 59.153 55.000 0.00 0.00 0.00 4.58
319 320 1.816224 GATCGACCTCAGATCCTAGCC 59.184 57.143 0.00 0.00 38.75 3.93
325 326 2.242926 TGGATGGATCGACCTCAGATC 58.757 52.381 0.00 0.00 42.68 2.75
327 328 2.034878 CTTGGATGGATCGACCTCAGA 58.965 52.381 0.00 0.00 39.86 3.27
329 330 1.866015 ACTTGGATGGATCGACCTCA 58.134 50.000 0.00 0.00 39.86 3.86
330 331 2.287668 CGTACTTGGATGGATCGACCTC 60.288 54.545 0.00 0.00 39.86 3.85
331 332 1.681793 CGTACTTGGATGGATCGACCT 59.318 52.381 0.00 0.00 39.86 3.85
345 1480 9.649167 AAACTATAGTATCAAAAGCACGTACTT 57.351 29.630 5.65 0.00 0.00 2.24
396 1531 4.773674 TCGGACAGAGGGAGTATTAAACAA 59.226 41.667 0.00 0.00 0.00 2.83
483 1620 4.811024 CCGAAATTACTTGCAGCAGAGATA 59.189 41.667 10.47 0.00 0.00 1.98
493 1630 2.945668 AGCTCCATCCGAAATTACTTGC 59.054 45.455 0.00 0.00 0.00 4.01
513 1650 7.336176 TCAGTGTGGAGTGTTACATAGTACTAG 59.664 40.741 8.85 3.62 0.00 2.57
618 1757 4.823989 GCCTCCATCAACTACTAATGCATT 59.176 41.667 17.56 17.56 0.00 3.56
671 1810 0.676466 TGAAATGGGCTACGTGCAGG 60.676 55.000 4.53 4.53 45.15 4.85
674 1813 1.165270 AACTGAAATGGGCTACGTGC 58.835 50.000 0.00 0.00 41.94 5.34
708 1847 5.075448 GTGCTTATGTCGCATATGATTTCG 58.925 41.667 6.97 0.07 39.89 3.46
737 1876 3.787785 TCTGTCTTTTGAACGTGCAGTA 58.212 40.909 0.00 0.00 0.00 2.74
827 2010 0.813821 GGGAGGCAAAACTCATGAGC 59.186 55.000 22.83 9.00 39.27 4.26
888 2071 4.225042 TCAAGGCCTGCTCTTATGTAAAGA 59.775 41.667 5.69 0.00 0.00 2.52
894 2077 3.204306 TGATCAAGGCCTGCTCTTATG 57.796 47.619 5.69 0.00 0.00 1.90
896 2079 3.939740 ATTGATCAAGGCCTGCTCTTA 57.060 42.857 5.69 0.00 0.00 2.10
911 2094 2.029649 GTGGCTGTGAAGTGCAATTGAT 60.030 45.455 10.34 0.00 0.00 2.57
934 2117 2.350772 GGGAGATTGTTTGCGTTGTGAG 60.351 50.000 0.00 0.00 0.00 3.51
961 2144 2.262603 CGAGGCTGCTGCACTGTA 59.737 61.111 17.89 0.00 41.91 2.74
1191 2380 1.668294 CTTCTGGCACTGGACGAGT 59.332 57.895 0.00 0.00 34.02 4.18
1393 2666 1.219393 CGGCCTCCTCCTTCTTGAC 59.781 63.158 0.00 0.00 0.00 3.18
1443 2716 1.589399 CCTCCACCTCCTCCTCCTCT 61.589 65.000 0.00 0.00 0.00 3.69
1454 2727 1.304952 CTCGTCTCCTCCTCCACCT 59.695 63.158 0.00 0.00 0.00 4.00
1455 2728 1.000646 ACTCGTCTCCTCCTCCACC 60.001 63.158 0.00 0.00 0.00 4.61
1456 2729 1.033202 GGACTCGTCTCCTCCTCCAC 61.033 65.000 0.00 0.00 0.00 4.02
1457 2730 1.303615 GGACTCGTCTCCTCCTCCA 59.696 63.158 0.00 0.00 0.00 3.86
1458 2731 1.454295 GGGACTCGTCTCCTCCTCC 60.454 68.421 0.00 0.00 0.00 4.30
1459 2732 1.820481 CGGGACTCGTCTCCTCCTC 60.820 68.421 0.00 0.00 0.00 3.71
1460 2733 2.272797 CGGGACTCGTCTCCTCCT 59.727 66.667 0.00 0.00 0.00 3.69
1473 2746 4.344865 GTTGCTGGGAAGCCGGGA 62.345 66.667 2.18 0.00 0.00 5.14
1503 2776 1.202582 ACCTCCTCATTCTTGACGACG 59.797 52.381 0.00 0.00 0.00 5.12
1504 2777 2.611518 CACCTCCTCATTCTTGACGAC 58.388 52.381 0.00 0.00 0.00 4.34
1505 2778 1.550524 CCACCTCCTCATTCTTGACGA 59.449 52.381 0.00 0.00 0.00 4.20
1527 2800 1.821759 CAACTCGCAACCACACCCA 60.822 57.895 0.00 0.00 0.00 4.51
1530 2803 0.248458 CAACCAACTCGCAACCACAC 60.248 55.000 0.00 0.00 0.00 3.82
1539 2812 1.738099 CGCTCTCCCAACCAACTCG 60.738 63.158 0.00 0.00 0.00 4.18
1583 2856 0.613260 ATACACCTCCGCAAGCTTCA 59.387 50.000 0.00 0.00 0.00 3.02
1605 2878 2.887568 CTCTCCATCACCACGCGC 60.888 66.667 5.73 0.00 0.00 6.86
1612 2885 0.247736 ACGTTGAGCCTCTCCATCAC 59.752 55.000 0.00 0.00 0.00 3.06
1613 2886 0.532573 GACGTTGAGCCTCTCCATCA 59.467 55.000 0.00 0.00 0.00 3.07
1618 2891 1.137825 CCTCGACGTTGAGCCTCTC 59.862 63.158 24.98 0.00 34.56 3.20
1619 2892 1.303398 TCCTCGACGTTGAGCCTCT 60.303 57.895 24.98 0.00 34.56 3.69
1669 2942 2.622452 CCTTCATCTTCTTGTGCCCCAT 60.622 50.000 0.00 0.00 0.00 4.00
1674 2947 2.670414 CTCGACCTTCATCTTCTTGTGC 59.330 50.000 0.00 0.00 0.00 4.57
1690 2963 2.034607 CTCCCTCCGGATTCTCGAC 58.965 63.158 3.57 0.00 37.60 4.20
1706 2979 3.658709 AGAAGTTAGTTGCTGTCAGCTC 58.341 45.455 24.76 17.11 42.97 4.09
1708 2981 3.658709 AGAGAAGTTAGTTGCTGTCAGC 58.341 45.455 18.32 18.32 42.82 4.26
1714 2987 2.628657 ACCGTGAGAGAAGTTAGTTGCT 59.371 45.455 0.00 0.00 0.00 3.91
1759 3120 4.105486 CGATCAGACTCTATGTTTTCGCA 58.895 43.478 0.00 0.00 0.00 5.10
1760 3121 4.106197 ACGATCAGACTCTATGTTTTCGC 58.894 43.478 0.00 0.00 0.00 4.70
1762 3123 7.644551 ACGATTACGATCAGACTCTATGTTTTC 59.355 37.037 0.00 0.00 42.66 2.29
1763 3124 7.481642 ACGATTACGATCAGACTCTATGTTTT 58.518 34.615 0.00 0.00 42.66 2.43
1764 3125 7.028926 ACGATTACGATCAGACTCTATGTTT 57.971 36.000 0.00 0.00 42.66 2.83
1765 3126 6.621316 ACGATTACGATCAGACTCTATGTT 57.379 37.500 0.00 0.00 42.66 2.71
1766 3127 7.441760 ACTTACGATTACGATCAGACTCTATGT 59.558 37.037 0.00 0.00 42.66 2.29
1767 3128 7.798801 ACTTACGATTACGATCAGACTCTATG 58.201 38.462 0.00 0.00 42.66 2.23
1768 3129 7.966246 ACTTACGATTACGATCAGACTCTAT 57.034 36.000 0.00 0.00 42.66 1.98
1769 3130 7.598118 CCTACTTACGATTACGATCAGACTCTA 59.402 40.741 0.00 0.00 42.66 2.43
1771 3132 6.423302 TCCTACTTACGATTACGATCAGACTC 59.577 42.308 0.00 0.00 42.66 3.36
1772 3133 6.286758 TCCTACTTACGATTACGATCAGACT 58.713 40.000 0.00 0.00 42.66 3.24
1773 3134 6.536731 TCCTACTTACGATTACGATCAGAC 57.463 41.667 0.00 0.00 42.66 3.51
1774 3135 6.539826 TGTTCCTACTTACGATTACGATCAGA 59.460 38.462 0.00 0.00 42.66 3.27
1775 3136 6.632035 GTGTTCCTACTTACGATTACGATCAG 59.368 42.308 0.00 0.00 42.66 2.90
1776 3137 6.489675 GTGTTCCTACTTACGATTACGATCA 58.510 40.000 0.00 0.00 42.66 2.92
1778 3139 5.505286 CGTGTTCCTACTTACGATTACGAT 58.495 41.667 0.00 0.00 42.66 3.73
1794 3330 2.050985 GCAGTGCTTGCGTGTTCC 60.051 61.111 8.18 0.00 44.09 3.62
1805 3341 2.127609 GTCGCAAACTCGCAGTGC 60.128 61.111 4.58 4.58 34.87 4.40
1816 3352 2.723209 CAAGTATATCGGTCGTCGCAA 58.277 47.619 0.00 0.00 39.05 4.85
1888 3427 3.039202 GATCAAACCCCTGCGTGCG 62.039 63.158 0.00 0.00 0.00 5.34
1889 3428 1.675641 AGATCAAACCCCTGCGTGC 60.676 57.895 0.00 0.00 0.00 5.34
1891 3430 1.675641 GCAGATCAAACCCCTGCGT 60.676 57.895 0.00 0.00 42.92 5.24
1892 3431 3.190878 GCAGATCAAACCCCTGCG 58.809 61.111 0.00 0.00 42.92 5.18
1894 3433 1.026718 GTCCGCAGATCAAACCCCTG 61.027 60.000 0.00 0.00 0.00 4.45
1895 3434 1.299976 GTCCGCAGATCAAACCCCT 59.700 57.895 0.00 0.00 0.00 4.79
1896 3435 2.106683 CGTCCGCAGATCAAACCCC 61.107 63.158 0.00 0.00 0.00 4.95
1897 3436 1.079405 TCGTCCGCAGATCAAACCC 60.079 57.895 0.00 0.00 0.00 4.11
1898 3437 1.683790 CGTCGTCCGCAGATCAAACC 61.684 60.000 0.00 0.00 0.00 3.27
1899 3438 1.683790 CCGTCGTCCGCAGATCAAAC 61.684 60.000 0.00 0.00 34.38 2.93
1900 3439 1.445410 CCGTCGTCCGCAGATCAAA 60.445 57.895 0.00 0.00 34.38 2.69
1901 3440 2.180769 CCGTCGTCCGCAGATCAA 59.819 61.111 0.00 0.00 34.38 2.57
1902 3441 2.748647 TCCGTCGTCCGCAGATCA 60.749 61.111 0.00 0.00 34.38 2.92
1903 3442 2.024871 CTCCGTCGTCCGCAGATC 59.975 66.667 0.00 0.00 34.38 2.75
1904 3443 3.518998 CCTCCGTCGTCCGCAGAT 61.519 66.667 0.00 0.00 34.38 2.90
1906 3445 4.052229 AACCTCCGTCGTCCGCAG 62.052 66.667 0.00 0.00 34.38 5.18
1907 3446 4.351938 CAACCTCCGTCGTCCGCA 62.352 66.667 0.00 0.00 34.38 5.69
1908 3447 3.352338 ATCAACCTCCGTCGTCCGC 62.352 63.158 0.00 0.00 34.38 5.54
1909 3448 1.516386 CATCAACCTCCGTCGTCCG 60.516 63.158 0.00 0.00 0.00 4.79
1910 3449 1.810030 GCATCAACCTCCGTCGTCC 60.810 63.158 0.00 0.00 0.00 4.79
1911 3450 0.460284 ATGCATCAACCTCCGTCGTC 60.460 55.000 0.00 0.00 0.00 4.20
1915 3454 0.394762 ATGCATGCATCAACCTCCGT 60.395 50.000 27.46 1.89 29.42 4.69
1916 3455 0.742505 AATGCATGCATCAACCTCCG 59.257 50.000 32.25 0.00 35.31 4.63
1919 3458 2.691526 CCTACAATGCATGCATCAACCT 59.308 45.455 32.25 14.70 35.31 3.50
1921 3460 2.100252 AGCCTACAATGCATGCATCAAC 59.900 45.455 32.25 18.08 35.31 3.18
1938 3477 1.302033 CACTGCTCCGTTTCAGCCT 60.302 57.895 0.00 0.00 35.89 4.58
1939 3478 1.166531 AACACTGCTCCGTTTCAGCC 61.167 55.000 0.00 0.00 35.89 4.85
1947 3486 2.618709 AGAAAAGGAAAACACTGCTCCG 59.381 45.455 0.00 0.00 34.22 4.63
1948 3487 4.655762 AAGAAAAGGAAAACACTGCTCC 57.344 40.909 0.00 0.00 0.00 4.70
1949 3488 6.813649 AGAAAAAGAAAAGGAAAACACTGCTC 59.186 34.615 0.00 0.00 0.00 4.26
1950 3489 6.701340 AGAAAAAGAAAAGGAAAACACTGCT 58.299 32.000 0.00 0.00 0.00 4.24
1951 3490 6.968131 AGAAAAAGAAAAGGAAAACACTGC 57.032 33.333 0.00 0.00 0.00 4.40
1952 3491 9.811655 GAAAAGAAAAAGAAAAGGAAAACACTG 57.188 29.630 0.00 0.00 0.00 3.66
1953 3492 9.778741 AGAAAAGAAAAAGAAAAGGAAAACACT 57.221 25.926 0.00 0.00 0.00 3.55
1960 3499 8.440059 GCGAAAAAGAAAAGAAAAAGAAAAGGA 58.560 29.630 0.00 0.00 0.00 3.36
1961 3500 7.422462 CGCGAAAAAGAAAAGAAAAAGAAAAGG 59.578 33.333 0.00 0.00 0.00 3.11
1962 3501 8.159709 TCGCGAAAAAGAAAAGAAAAAGAAAAG 58.840 29.630 6.20 0.00 0.00 2.27
1963 3502 8.008902 TCGCGAAAAAGAAAAGAAAAAGAAAA 57.991 26.923 6.20 0.00 0.00 2.29
1964 3503 7.569677 TCGCGAAAAAGAAAAGAAAAAGAAA 57.430 28.000 6.20 0.00 0.00 2.52
1965 3504 7.569677 TTCGCGAAAAAGAAAAGAAAAAGAA 57.430 28.000 21.14 0.00 0.00 2.52
1966 3505 7.569677 TTTCGCGAAAAAGAAAAGAAAAAGA 57.430 28.000 30.57 2.67 33.93 2.52
1967 3506 7.579093 GGATTTCGCGAAAAAGAAAAGAAAAAG 59.421 33.333 35.06 0.00 39.42 2.27
1973 3512 3.360758 CCGGATTTCGCGAAAAAGAAAAG 59.639 43.478 35.06 20.99 39.42 2.27
1980 3519 0.672401 AGCTCCGGATTTCGCGAAAA 60.672 50.000 35.06 19.02 37.59 2.29
1984 3523 1.068472 ACTATAGCTCCGGATTTCGCG 60.068 52.381 3.57 0.00 37.59 5.87
2081 3628 4.577693 TCGGTCACATAGATGGTAGTACAC 59.422 45.833 2.06 0.00 0.00 2.90
2110 3657 6.075310 CGCTTGCGTTTCTAATGTGTTAAAAA 60.075 34.615 6.86 0.00 0.00 1.94
2111 3658 5.396947 CGCTTGCGTTTCTAATGTGTTAAAA 59.603 36.000 6.86 0.00 0.00 1.52
2112 3659 4.907010 CGCTTGCGTTTCTAATGTGTTAAA 59.093 37.500 6.86 0.00 0.00 1.52
2113 3660 4.459606 CGCTTGCGTTTCTAATGTGTTAA 58.540 39.130 6.86 0.00 0.00 2.01
2114 3661 3.665848 GCGCTTGCGTTTCTAATGTGTTA 60.666 43.478 16.38 0.00 0.00 2.41
2115 3662 2.916111 CGCTTGCGTTTCTAATGTGTT 58.084 42.857 6.86 0.00 0.00 3.32
2116 3663 1.399727 GCGCTTGCGTTTCTAATGTGT 60.400 47.619 16.38 0.00 0.00 3.72
2117 3664 1.135972 AGCGCTTGCGTTTCTAATGTG 60.136 47.619 16.38 0.00 45.69 3.21
2118 3665 1.128692 GAGCGCTTGCGTTTCTAATGT 59.871 47.619 13.26 0.00 45.69 2.71
2119 3666 1.128507 TGAGCGCTTGCGTTTCTAATG 59.871 47.619 13.26 0.00 45.69 1.90
2120 3667 1.438651 TGAGCGCTTGCGTTTCTAAT 58.561 45.000 13.26 0.00 45.69 1.73
2121 3668 1.438651 ATGAGCGCTTGCGTTTCTAA 58.561 45.000 13.26 0.00 45.69 2.10
2122 3669 2.287393 TATGAGCGCTTGCGTTTCTA 57.713 45.000 13.26 4.00 45.69 2.10
2123 3670 1.656652 ATATGAGCGCTTGCGTTTCT 58.343 45.000 13.26 5.17 45.69 2.52
2124 3671 3.585748 TTATATGAGCGCTTGCGTTTC 57.414 42.857 13.26 13.97 45.69 2.78
2125 3672 3.680789 GTTTATATGAGCGCTTGCGTTT 58.319 40.909 13.26 0.00 45.69 3.60
2126 3673 2.285602 CGTTTATATGAGCGCTTGCGTT 60.286 45.455 13.26 10.61 45.69 4.84
2127 3674 1.257936 CGTTTATATGAGCGCTTGCGT 59.742 47.619 13.26 3.24 45.69 5.24
2128 3675 1.924408 CGTTTATATGAGCGCTTGCG 58.076 50.000 13.26 10.90 45.69 4.85
2129 3676 1.663494 GCGTTTATATGAGCGCTTGC 58.337 50.000 19.08 0.00 45.48 4.01
2130 3677 1.924408 CGCGTTTATATGAGCGCTTG 58.076 50.000 22.51 7.90 46.56 4.01
2135 3682 3.428870 AGTGTATGCGCGTTTATATGAGC 59.571 43.478 7.78 0.00 36.72 4.26
2136 3683 5.576337 AAGTGTATGCGCGTTTATATGAG 57.424 39.130 7.78 0.00 0.00 2.90
2137 3684 6.210796 AGTAAGTGTATGCGCGTTTATATGA 58.789 36.000 7.78 0.00 0.00 2.15
2138 3685 6.143278 TGAGTAAGTGTATGCGCGTTTATATG 59.857 38.462 7.78 0.00 0.00 1.78
2139 3686 6.143438 GTGAGTAAGTGTATGCGCGTTTATAT 59.857 38.462 7.78 0.00 0.00 0.86
2140 3687 5.456497 GTGAGTAAGTGTATGCGCGTTTATA 59.544 40.000 7.78 1.67 0.00 0.98
2141 3688 4.266976 GTGAGTAAGTGTATGCGCGTTTAT 59.733 41.667 7.78 2.74 0.00 1.40
2142 3689 3.609373 GTGAGTAAGTGTATGCGCGTTTA 59.391 43.478 7.78 0.00 0.00 2.01
2143 3690 2.410730 GTGAGTAAGTGTATGCGCGTTT 59.589 45.455 7.78 0.00 0.00 3.60
2144 3691 1.990563 GTGAGTAAGTGTATGCGCGTT 59.009 47.619 7.78 0.00 0.00 4.84
2145 3692 1.068125 TGTGAGTAAGTGTATGCGCGT 60.068 47.619 8.43 7.55 0.00 6.01
2146 3693 1.624487 TGTGAGTAAGTGTATGCGCG 58.376 50.000 0.00 0.00 0.00 6.86
2147 3694 3.186909 TCATGTGAGTAAGTGTATGCGC 58.813 45.455 0.00 0.00 0.00 6.09
2148 3695 4.259411 CGTTCATGTGAGTAAGTGTATGCG 60.259 45.833 0.00 0.00 0.00 4.73
2149 3696 4.492570 GCGTTCATGTGAGTAAGTGTATGC 60.493 45.833 0.00 0.00 0.00 3.14
2150 3697 4.625311 TGCGTTCATGTGAGTAAGTGTATG 59.375 41.667 0.00 0.00 0.00 2.39
2151 3698 4.625742 GTGCGTTCATGTGAGTAAGTGTAT 59.374 41.667 0.00 0.00 0.00 2.29
2152 3699 3.985279 GTGCGTTCATGTGAGTAAGTGTA 59.015 43.478 0.00 0.00 0.00 2.90
2153 3700 2.800544 GTGCGTTCATGTGAGTAAGTGT 59.199 45.455 0.00 0.00 0.00 3.55
2154 3701 2.799978 TGTGCGTTCATGTGAGTAAGTG 59.200 45.455 0.00 0.00 0.00 3.16
2155 3702 3.106242 TGTGCGTTCATGTGAGTAAGT 57.894 42.857 0.00 0.00 0.00 2.24
2156 3703 4.259411 CGTATGTGCGTTCATGTGAGTAAG 60.259 45.833 0.00 0.00 0.00 2.34
2157 3704 3.610677 CGTATGTGCGTTCATGTGAGTAA 59.389 43.478 0.00 0.00 0.00 2.24
2158 3705 3.175929 CGTATGTGCGTTCATGTGAGTA 58.824 45.455 0.00 0.00 0.00 2.59
2159 3706 1.992667 CGTATGTGCGTTCATGTGAGT 59.007 47.619 0.00 0.00 0.00 3.41
2160 3707 1.267038 GCGTATGTGCGTTCATGTGAG 60.267 52.381 0.00 0.00 0.00 3.51
2161 3708 0.718904 GCGTATGTGCGTTCATGTGA 59.281 50.000 0.00 0.00 0.00 3.58
2162 3709 0.441921 TGCGTATGTGCGTTCATGTG 59.558 50.000 0.00 0.00 37.81 3.21
2163 3710 0.442310 GTGCGTATGTGCGTTCATGT 59.558 50.000 0.00 0.00 37.81 3.21
2164 3711 0.441921 TGTGCGTATGTGCGTTCATG 59.558 50.000 5.08 0.00 37.81 3.07
2165 3712 0.442310 GTGTGCGTATGTGCGTTCAT 59.558 50.000 0.00 0.87 37.81 2.57
2166 3713 1.561717 GGTGTGCGTATGTGCGTTCA 61.562 55.000 0.00 0.00 37.81 3.18
2167 3714 1.131826 GGTGTGCGTATGTGCGTTC 59.868 57.895 0.00 0.00 37.81 3.95
2168 3715 2.322081 GGGTGTGCGTATGTGCGTT 61.322 57.895 0.00 0.00 37.81 4.84
2169 3716 2.740826 GGGTGTGCGTATGTGCGT 60.741 61.111 0.00 0.00 37.81 5.24
2170 3717 3.496131 GGGGTGTGCGTATGTGCG 61.496 66.667 0.00 0.00 37.81 5.34
2171 3718 1.714899 GATGGGGTGTGCGTATGTGC 61.715 60.000 0.00 0.00 0.00 4.57
2172 3719 0.107703 AGATGGGGTGTGCGTATGTG 60.108 55.000 0.00 0.00 0.00 3.21
2173 3720 0.178068 GAGATGGGGTGTGCGTATGT 59.822 55.000 0.00 0.00 0.00 2.29
2174 3721 0.465705 AGAGATGGGGTGTGCGTATG 59.534 55.000 0.00 0.00 0.00 2.39
2175 3722 2.082140 TAGAGATGGGGTGTGCGTAT 57.918 50.000 0.00 0.00 0.00 3.06
2176 3723 1.686587 CATAGAGATGGGGTGTGCGTA 59.313 52.381 0.00 0.00 0.00 4.42
2177 3724 0.465705 CATAGAGATGGGGTGTGCGT 59.534 55.000 0.00 0.00 0.00 5.24
2178 3725 0.752658 TCATAGAGATGGGGTGTGCG 59.247 55.000 0.00 0.00 33.49 5.34
2179 3726 1.542108 GCTCATAGAGATGGGGTGTGC 60.542 57.143 0.00 0.00 33.69 4.57
2180 3727 1.764723 TGCTCATAGAGATGGGGTGTG 59.235 52.381 0.00 0.00 33.69 3.82
2181 3728 1.765314 GTGCTCATAGAGATGGGGTGT 59.235 52.381 0.00 0.00 33.69 4.16
2182 3729 1.071385 GGTGCTCATAGAGATGGGGTG 59.929 57.143 0.00 0.00 33.69 4.61
2183 3730 1.061812 AGGTGCTCATAGAGATGGGGT 60.062 52.381 0.00 0.00 33.69 4.95
2184 3731 1.622811 GAGGTGCTCATAGAGATGGGG 59.377 57.143 0.00 0.00 33.69 4.96
2185 3732 1.622811 GGAGGTGCTCATAGAGATGGG 59.377 57.143 0.00 0.00 36.52 4.00
2186 3733 1.271934 CGGAGGTGCTCATAGAGATGG 59.728 57.143 0.00 0.00 33.49 3.51
2187 3734 2.228582 CTCGGAGGTGCTCATAGAGATG 59.771 54.545 0.00 0.00 33.38 2.90
2188 3735 2.107378 TCTCGGAGGTGCTCATAGAGAT 59.893 50.000 4.96 0.00 34.67 2.75
2189 3736 1.490910 TCTCGGAGGTGCTCATAGAGA 59.509 52.381 4.96 4.64 36.00 3.10
2190 3737 1.879380 CTCTCGGAGGTGCTCATAGAG 59.121 57.143 4.96 0.00 35.86 2.43
2191 3738 1.490910 TCTCTCGGAGGTGCTCATAGA 59.509 52.381 4.96 0.00 31.08 1.98
2192 3739 1.974265 TCTCTCGGAGGTGCTCATAG 58.026 55.000 4.96 0.00 31.08 2.23
2193 3740 2.437085 TTCTCTCGGAGGTGCTCATA 57.563 50.000 4.96 0.00 31.08 2.15
2194 3741 1.411977 CATTCTCTCGGAGGTGCTCAT 59.588 52.381 4.96 0.00 31.08 2.90
2195 3742 0.820226 CATTCTCTCGGAGGTGCTCA 59.180 55.000 4.96 0.00 31.08 4.26
2196 3743 1.066908 CTCATTCTCTCGGAGGTGCTC 59.933 57.143 4.96 0.00 0.00 4.26
2197 3744 1.110442 CTCATTCTCTCGGAGGTGCT 58.890 55.000 4.96 0.00 0.00 4.40
2198 3745 0.529555 GCTCATTCTCTCGGAGGTGC 60.530 60.000 4.96 0.00 0.00 5.01
2199 3746 0.103937 GGCTCATTCTCTCGGAGGTG 59.896 60.000 4.96 0.00 0.00 4.00
2200 3747 1.388065 CGGCTCATTCTCTCGGAGGT 61.388 60.000 4.96 0.00 0.00 3.85
2201 3748 1.361993 CGGCTCATTCTCTCGGAGG 59.638 63.158 4.96 0.00 0.00 4.30
2202 3749 1.361993 CCGGCTCATTCTCTCGGAG 59.638 63.158 0.00 0.00 42.94 4.63
2203 3750 2.786495 GCCGGCTCATTCTCTCGGA 61.786 63.158 22.15 0.00 42.94 4.55
2204 3751 2.279784 GCCGGCTCATTCTCTCGG 60.280 66.667 22.15 0.00 43.13 4.63
2205 3752 0.315251 TATGCCGGCTCATTCTCTCG 59.685 55.000 29.70 0.00 0.00 4.04
2206 3753 2.028658 TGATATGCCGGCTCATTCTCTC 60.029 50.000 29.70 12.76 0.00 3.20
2207 3754 1.973515 TGATATGCCGGCTCATTCTCT 59.026 47.619 29.70 3.16 0.00 3.10
2208 3755 2.462456 TGATATGCCGGCTCATTCTC 57.538 50.000 29.70 15.31 0.00 2.87
2209 3756 2.570752 AGATGATATGCCGGCTCATTCT 59.429 45.455 29.70 21.04 30.00 2.40
2210 3757 2.983229 AGATGATATGCCGGCTCATTC 58.017 47.619 29.70 19.41 30.00 2.67
2211 3758 3.079578 CAAGATGATATGCCGGCTCATT 58.920 45.455 29.70 12.21 30.00 2.57
2212 3759 2.303890 TCAAGATGATATGCCGGCTCAT 59.696 45.455 29.70 27.00 32.46 2.90
2213 3760 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
2214 3761 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
2215 3762 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
2216 3763 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
2217 3764 5.954296 AAAATCTCAAGATGATATGCCGG 57.046 39.130 0.00 0.00 34.49 6.13
2218 3765 8.260270 TCATAAAATCTCAAGATGATATGCCG 57.740 34.615 14.55 0.00 35.76 5.69
2224 3771 9.118300 GGTGACTTCATAAAATCTCAAGATGAT 57.882 33.333 0.00 0.00 34.49 2.45
2225 3772 7.278646 CGGTGACTTCATAAAATCTCAAGATGA 59.721 37.037 0.00 0.00 34.49 2.92
2226 3773 7.065085 ACGGTGACTTCATAAAATCTCAAGATG 59.935 37.037 0.00 0.00 34.49 2.90
2227 3774 7.106239 ACGGTGACTTCATAAAATCTCAAGAT 58.894 34.615 0.00 0.00 36.07 2.40
2228 3775 6.464222 ACGGTGACTTCATAAAATCTCAAGA 58.536 36.000 0.00 0.00 0.00 3.02
2229 3776 6.727824 ACGGTGACTTCATAAAATCTCAAG 57.272 37.500 0.00 0.00 0.00 3.02
2230 3777 7.608153 TCTACGGTGACTTCATAAAATCTCAA 58.392 34.615 0.00 0.00 0.00 3.02
2231 3778 7.165460 TCTACGGTGACTTCATAAAATCTCA 57.835 36.000 0.00 0.00 0.00 3.27
2232 3779 7.707035 ACATCTACGGTGACTTCATAAAATCTC 59.293 37.037 0.00 0.00 0.00 2.75
2233 3780 7.556844 ACATCTACGGTGACTTCATAAAATCT 58.443 34.615 0.00 0.00 0.00 2.40
2234 3781 7.707035 AGACATCTACGGTGACTTCATAAAATC 59.293 37.037 0.00 0.00 0.00 2.17
2235 3782 7.556844 AGACATCTACGGTGACTTCATAAAAT 58.443 34.615 0.00 0.00 0.00 1.82
2236 3783 6.931838 AGACATCTACGGTGACTTCATAAAA 58.068 36.000 0.00 0.00 0.00 1.52
2237 3784 6.525578 AGACATCTACGGTGACTTCATAAA 57.474 37.500 0.00 0.00 0.00 1.40
2238 3785 5.220796 CGAGACATCTACGGTGACTTCATAA 60.221 44.000 0.00 0.00 0.00 1.90
2239 3786 4.272748 CGAGACATCTACGGTGACTTCATA 59.727 45.833 0.00 0.00 0.00 2.15
2240 3787 3.065510 CGAGACATCTACGGTGACTTCAT 59.934 47.826 0.00 0.00 0.00 2.57
2241 3788 2.418976 CGAGACATCTACGGTGACTTCA 59.581 50.000 0.00 0.00 0.00 3.02
2242 3789 2.419324 ACGAGACATCTACGGTGACTTC 59.581 50.000 0.00 0.00 0.00 3.01
2243 3790 2.434428 ACGAGACATCTACGGTGACTT 58.566 47.619 0.00 0.00 0.00 3.01
2244 3791 2.110901 ACGAGACATCTACGGTGACT 57.889 50.000 0.00 0.00 0.00 3.41
2245 3792 2.935201 ACTACGAGACATCTACGGTGAC 59.065 50.000 0.00 0.00 0.00 3.67
2246 3793 3.193263 GACTACGAGACATCTACGGTGA 58.807 50.000 0.00 0.00 0.00 4.02
2247 3794 2.033917 CGACTACGAGACATCTACGGTG 60.034 54.545 0.00 0.00 42.66 4.94
2248 3795 2.159184 TCGACTACGAGACATCTACGGT 60.159 50.000 0.00 0.00 43.81 4.83
2249 3796 2.467838 TCGACTACGAGACATCTACGG 58.532 52.381 0.00 0.00 43.81 4.02
2261 3808 2.863153 ACGTTCCCGTCGACTACG 59.137 61.111 14.70 18.15 46.28 3.51
2273 3820 2.194201 TTCAATGGGGGAAGACGTTC 57.806 50.000 0.00 0.00 0.00 3.95
2274 3821 2.158519 ACTTTCAATGGGGGAAGACGTT 60.159 45.455 0.00 0.00 0.00 3.99
2275 3822 1.423921 ACTTTCAATGGGGGAAGACGT 59.576 47.619 0.00 0.00 0.00 4.34
2276 3823 1.812571 CACTTTCAATGGGGGAAGACG 59.187 52.381 0.00 0.00 0.00 4.18
2277 3824 2.876581 ACACTTTCAATGGGGGAAGAC 58.123 47.619 0.00 0.00 0.00 3.01
2278 3825 4.625324 CGATACACTTTCAATGGGGGAAGA 60.625 45.833 0.00 0.00 0.00 2.87
2279 3826 3.627577 CGATACACTTTCAATGGGGGAAG 59.372 47.826 0.00 0.00 0.00 3.46
2280 3827 3.009695 ACGATACACTTTCAATGGGGGAA 59.990 43.478 0.00 0.00 0.00 3.97
2281 3828 2.574369 ACGATACACTTTCAATGGGGGA 59.426 45.455 0.00 0.00 0.00 4.81
2282 3829 2.943033 GACGATACACTTTCAATGGGGG 59.057 50.000 0.00 0.00 0.00 5.40
2283 3830 2.607635 CGACGATACACTTTCAATGGGG 59.392 50.000 0.00 0.00 0.00 4.96
2284 3831 2.607635 CCGACGATACACTTTCAATGGG 59.392 50.000 0.00 0.00 0.00 4.00
2285 3832 3.517602 TCCGACGATACACTTTCAATGG 58.482 45.455 0.00 0.00 0.00 3.16
2286 3833 5.524511 TTTCCGACGATACACTTTCAATG 57.475 39.130 0.00 0.00 0.00 2.82
2287 3834 7.010183 CAGTATTTCCGACGATACACTTTCAAT 59.990 37.037 0.00 0.00 32.45 2.57
2288 3835 6.309494 CAGTATTTCCGACGATACACTTTCAA 59.691 38.462 0.00 0.00 32.45 2.69
2289 3836 5.803461 CAGTATTTCCGACGATACACTTTCA 59.197 40.000 0.00 0.00 32.45 2.69
2290 3837 6.032094 TCAGTATTTCCGACGATACACTTTC 58.968 40.000 0.00 0.00 32.45 2.62
2291 3838 5.957798 TCAGTATTTCCGACGATACACTTT 58.042 37.500 0.00 0.00 32.45 2.66
2292 3839 5.571784 TCAGTATTTCCGACGATACACTT 57.428 39.130 0.00 0.00 32.45 3.16
2293 3840 5.571784 TTCAGTATTTCCGACGATACACT 57.428 39.130 0.00 0.00 32.45 3.55
2294 3841 6.823678 ATTTCAGTATTTCCGACGATACAC 57.176 37.500 0.00 0.00 32.45 2.90
2295 3842 8.929827 TTTATTTCAGTATTTCCGACGATACA 57.070 30.769 0.00 0.00 32.45 2.29
2298 3845 9.104965 TGAATTTATTTCAGTATTTCCGACGAT 57.895 29.630 0.00 0.00 39.44 3.73
2299 3846 8.481974 TGAATTTATTTCAGTATTTCCGACGA 57.518 30.769 0.00 0.00 39.44 4.20
2300 3847 9.210426 CTTGAATTTATTTCAGTATTTCCGACG 57.790 33.333 0.00 0.00 44.90 5.12
2312 3859 9.236691 GCTCGCATTTATCTTGAATTTATTTCA 57.763 29.630 0.00 0.00 42.62 2.69
2313 3860 9.236691 TGCTCGCATTTATCTTGAATTTATTTC 57.763 29.630 0.00 0.00 34.72 2.17
2314 3861 9.754382 ATGCTCGCATTTATCTTGAATTTATTT 57.246 25.926 0.00 0.00 31.82 1.40
2315 3862 9.403110 GATGCTCGCATTTATCTTGAATTTATT 57.597 29.630 5.79 0.00 36.70 1.40
2316 3863 8.570488 TGATGCTCGCATTTATCTTGAATTTAT 58.430 29.630 5.79 0.00 36.70 1.40
2317 3864 7.929159 TGATGCTCGCATTTATCTTGAATTTA 58.071 30.769 5.79 0.00 36.70 1.40
2318 3865 6.798482 TGATGCTCGCATTTATCTTGAATTT 58.202 32.000 5.79 0.00 36.70 1.82
2319 3866 6.381481 TGATGCTCGCATTTATCTTGAATT 57.619 33.333 5.79 0.00 36.70 2.17
2320 3867 5.048921 CCTGATGCTCGCATTTATCTTGAAT 60.049 40.000 5.79 0.00 36.70 2.57
2321 3868 4.274214 CCTGATGCTCGCATTTATCTTGAA 59.726 41.667 5.79 0.00 36.70 2.69
2322 3869 3.811497 CCTGATGCTCGCATTTATCTTGA 59.189 43.478 5.79 0.00 36.70 3.02
2323 3870 3.811497 TCCTGATGCTCGCATTTATCTTG 59.189 43.478 5.79 0.00 36.70 3.02
2324 3871 3.812053 GTCCTGATGCTCGCATTTATCTT 59.188 43.478 5.79 0.00 36.70 2.40
2325 3872 3.070734 AGTCCTGATGCTCGCATTTATCT 59.929 43.478 5.79 0.02 36.70 1.98
2326 3873 3.397482 AGTCCTGATGCTCGCATTTATC 58.603 45.455 5.79 0.00 36.70 1.75
2327 3874 3.482156 AGTCCTGATGCTCGCATTTAT 57.518 42.857 5.79 0.00 36.70 1.40
2328 3875 2.988010 AGTCCTGATGCTCGCATTTA 57.012 45.000 5.79 0.00 36.70 1.40
2329 3876 2.119801 AAGTCCTGATGCTCGCATTT 57.880 45.000 5.79 0.00 36.70 2.32
2330 3877 2.988010 TAAGTCCTGATGCTCGCATT 57.012 45.000 5.79 0.00 36.70 3.56
2331 3878 2.939103 GTTTAAGTCCTGATGCTCGCAT 59.061 45.455 3.70 3.70 39.69 4.73
2332 3879 2.028112 AGTTTAAGTCCTGATGCTCGCA 60.028 45.455 0.00 0.00 0.00 5.10
2333 3880 2.622436 AGTTTAAGTCCTGATGCTCGC 58.378 47.619 0.00 0.00 0.00 5.03
2334 3881 4.690748 TCAAAGTTTAAGTCCTGATGCTCG 59.309 41.667 0.00 0.00 0.00 5.03
2335 3882 6.372659 TCATCAAAGTTTAAGTCCTGATGCTC 59.627 38.462 14.79 0.00 39.85 4.26
2336 3883 6.240894 TCATCAAAGTTTAAGTCCTGATGCT 58.759 36.000 14.79 0.00 39.85 3.79
2337 3884 6.500684 TCATCAAAGTTTAAGTCCTGATGC 57.499 37.500 14.79 0.00 39.85 3.91
2338 3885 6.149973 TGCTCATCAAAGTTTAAGTCCTGATG 59.850 38.462 13.99 13.99 40.86 3.07
2339 3886 6.240894 TGCTCATCAAAGTTTAAGTCCTGAT 58.759 36.000 0.00 0.00 0.00 2.90
2340 3887 5.620206 TGCTCATCAAAGTTTAAGTCCTGA 58.380 37.500 0.00 0.00 0.00 3.86
2341 3888 5.106396 CCTGCTCATCAAAGTTTAAGTCCTG 60.106 44.000 0.00 0.00 0.00 3.86
2342 3889 5.006386 CCTGCTCATCAAAGTTTAAGTCCT 58.994 41.667 0.00 0.00 0.00 3.85
2343 3890 4.156739 CCCTGCTCATCAAAGTTTAAGTCC 59.843 45.833 0.00 0.00 0.00 3.85
2344 3891 4.156739 CCCCTGCTCATCAAAGTTTAAGTC 59.843 45.833 0.00 0.00 0.00 3.01
2345 3892 4.082125 CCCCTGCTCATCAAAGTTTAAGT 58.918 43.478 0.00 0.00 0.00 2.24
2346 3893 4.335416 TCCCCTGCTCATCAAAGTTTAAG 58.665 43.478 0.00 0.00 0.00 1.85
2347 3894 4.380843 TCCCCTGCTCATCAAAGTTTAA 57.619 40.909 0.00 0.00 0.00 1.52
2348 3895 4.591321 ATCCCCTGCTCATCAAAGTTTA 57.409 40.909 0.00 0.00 0.00 2.01
2349 3896 2.978156 TCCCCTGCTCATCAAAGTTT 57.022 45.000 0.00 0.00 0.00 2.66
2350 3897 4.166725 TGATATCCCCTGCTCATCAAAGTT 59.833 41.667 0.00 0.00 0.00 2.66
2351 3898 3.718434 TGATATCCCCTGCTCATCAAAGT 59.282 43.478 0.00 0.00 0.00 2.66
2352 3899 4.070716 GTGATATCCCCTGCTCATCAAAG 58.929 47.826 0.00 0.00 0.00 2.77
2353 3900 3.718434 AGTGATATCCCCTGCTCATCAAA 59.282 43.478 0.00 0.00 0.00 2.69
2354 3901 3.072038 CAGTGATATCCCCTGCTCATCAA 59.928 47.826 0.00 0.00 0.00 2.57
2355 3902 2.636403 CAGTGATATCCCCTGCTCATCA 59.364 50.000 0.00 0.00 0.00 3.07
2356 3903 2.636893 ACAGTGATATCCCCTGCTCATC 59.363 50.000 15.72 0.00 0.00 2.92
2357 3904 2.371179 CACAGTGATATCCCCTGCTCAT 59.629 50.000 15.72 0.00 0.00 2.90
2358 3905 1.764723 CACAGTGATATCCCCTGCTCA 59.235 52.381 15.72 0.00 0.00 4.26
2359 3906 1.542108 GCACAGTGATATCCCCTGCTC 60.542 57.143 15.72 7.30 0.00 4.26
2360 3907 0.471617 GCACAGTGATATCCCCTGCT 59.528 55.000 15.72 4.87 0.00 4.24
2361 3908 0.181114 TGCACAGTGATATCCCCTGC 59.819 55.000 15.72 10.56 0.00 4.85
2362 3909 1.475751 GGTGCACAGTGATATCCCCTG 60.476 57.143 20.43 14.69 0.00 4.45
2363 3910 0.839946 GGTGCACAGTGATATCCCCT 59.160 55.000 20.43 0.00 0.00 4.79
2364 3911 0.839946 AGGTGCACAGTGATATCCCC 59.160 55.000 20.43 0.00 0.00 4.81
2365 3912 3.467803 GTTAGGTGCACAGTGATATCCC 58.532 50.000 20.43 0.00 0.00 3.85
2366 3913 3.118408 TGGTTAGGTGCACAGTGATATCC 60.118 47.826 20.43 11.12 0.00 2.59
2367 3914 4.137116 TGGTTAGGTGCACAGTGATATC 57.863 45.455 20.43 0.00 0.00 1.63
2368 3915 4.410228 AGATGGTTAGGTGCACAGTGATAT 59.590 41.667 20.43 5.87 0.00 1.63
2369 3916 3.774766 AGATGGTTAGGTGCACAGTGATA 59.225 43.478 20.43 0.57 0.00 2.15
2370 3917 2.573462 AGATGGTTAGGTGCACAGTGAT 59.427 45.455 20.43 2.05 0.00 3.06
2371 3918 1.977854 AGATGGTTAGGTGCACAGTGA 59.022 47.619 20.43 0.00 0.00 3.41
2372 3919 2.289631 TGAGATGGTTAGGTGCACAGTG 60.290 50.000 20.43 0.00 0.00 3.66
2373 3920 1.977854 TGAGATGGTTAGGTGCACAGT 59.022 47.619 20.43 7.74 0.00 3.55
2374 3921 2.744202 GTTGAGATGGTTAGGTGCACAG 59.256 50.000 20.43 0.00 0.00 3.66
2375 3922 2.371841 AGTTGAGATGGTTAGGTGCACA 59.628 45.455 20.43 0.00 0.00 4.57
2376 3923 3.059352 AGTTGAGATGGTTAGGTGCAC 57.941 47.619 8.80 8.80 0.00 4.57
2377 3924 3.580895 TGTAGTTGAGATGGTTAGGTGCA 59.419 43.478 0.00 0.00 0.00 4.57
2378 3925 4.184629 CTGTAGTTGAGATGGTTAGGTGC 58.815 47.826 0.00 0.00 0.00 5.01
2379 3926 4.223032 ACCTGTAGTTGAGATGGTTAGGTG 59.777 45.833 0.00 0.00 34.91 4.00
2380 3927 4.426704 ACCTGTAGTTGAGATGGTTAGGT 58.573 43.478 0.00 0.00 0.00 3.08
2381 3928 5.422214 AACCTGTAGTTGAGATGGTTAGG 57.578 43.478 0.00 0.00 37.29 2.69
2393 3940 4.753107 CACATAACGAACCAACCTGTAGTT 59.247 41.667 0.00 0.00 40.16 2.24
2394 3941 4.039488 TCACATAACGAACCAACCTGTAGT 59.961 41.667 0.00 0.00 0.00 2.73
2395 3942 4.387862 GTCACATAACGAACCAACCTGTAG 59.612 45.833 0.00 0.00 0.00 2.74
2396 3943 4.309099 GTCACATAACGAACCAACCTGTA 58.691 43.478 0.00 0.00 0.00 2.74
2397 3944 3.135994 GTCACATAACGAACCAACCTGT 58.864 45.455 0.00 0.00 0.00 4.00
2398 3945 2.482721 GGTCACATAACGAACCAACCTG 59.517 50.000 0.00 0.00 0.00 4.00
2399 3946 2.774687 GGTCACATAACGAACCAACCT 58.225 47.619 0.00 0.00 0.00 3.50
2400 3947 1.461897 CGGTCACATAACGAACCAACC 59.538 52.381 0.00 0.00 0.00 3.77
2401 3948 2.156310 GTCGGTCACATAACGAACCAAC 59.844 50.000 0.00 0.00 38.46 3.77
2402 3949 2.406130 GTCGGTCACATAACGAACCAA 58.594 47.619 0.00 0.00 38.46 3.67
2403 3950 1.337074 GGTCGGTCACATAACGAACCA 60.337 52.381 0.00 0.00 38.32 3.67
2404 3951 1.353076 GGTCGGTCACATAACGAACC 58.647 55.000 0.00 0.00 38.32 3.62
2405 3952 1.067354 AGGGTCGGTCACATAACGAAC 60.067 52.381 0.00 0.00 43.13 3.95
2406 3953 1.259609 AGGGTCGGTCACATAACGAA 58.740 50.000 0.00 0.00 38.46 3.85
2407 3954 2.127271 TAGGGTCGGTCACATAACGA 57.873 50.000 0.00 0.00 0.00 3.85
2408 3955 2.945447 TTAGGGTCGGTCACATAACG 57.055 50.000 0.00 0.00 0.00 3.18
2409 3956 4.939439 ACAATTTAGGGTCGGTCACATAAC 59.061 41.667 0.00 0.00 0.00 1.89
2410 3957 5.168647 ACAATTTAGGGTCGGTCACATAA 57.831 39.130 0.00 0.00 0.00 1.90
2411 3958 4.829872 ACAATTTAGGGTCGGTCACATA 57.170 40.909 0.00 0.00 0.00 2.29
2412 3959 3.713826 ACAATTTAGGGTCGGTCACAT 57.286 42.857 0.00 0.00 0.00 3.21
2413 3960 3.833650 TCTACAATTTAGGGTCGGTCACA 59.166 43.478 0.00 0.00 0.00 3.58
2414 3961 4.460948 TCTACAATTTAGGGTCGGTCAC 57.539 45.455 0.00 0.00 0.00 3.67
2415 3962 5.687166 AATCTACAATTTAGGGTCGGTCA 57.313 39.130 0.00 0.00 0.00 4.02
2416 3963 6.596497 TCAAAATCTACAATTTAGGGTCGGTC 59.404 38.462 0.00 0.00 0.00 4.79
2417 3964 6.478129 TCAAAATCTACAATTTAGGGTCGGT 58.522 36.000 0.00 0.00 0.00 4.69
2418 3965 6.995511 TCAAAATCTACAATTTAGGGTCGG 57.004 37.500 0.00 0.00 0.00 4.79
2419 3966 7.282224 TCCATCAAAATCTACAATTTAGGGTCG 59.718 37.037 0.00 0.00 0.00 4.79
2420 3967 8.519799 TCCATCAAAATCTACAATTTAGGGTC 57.480 34.615 0.00 0.00 0.00 4.46
2476 4024 7.432838 GTGTCGAGACTTAACTAATTCTCATCC 59.567 40.741 5.28 4.97 40.16 3.51
2495 4043 3.183976 GCATAGCTCATGAATGTGTCGAG 59.816 47.826 7.51 0.00 36.69 4.04
2497 4045 2.222678 GGCATAGCTCATGAATGTGTCG 59.777 50.000 7.51 0.00 36.69 4.35
2498 4046 2.222678 CGGCATAGCTCATGAATGTGTC 59.777 50.000 7.51 3.95 36.69 3.67
2499 4047 2.216046 CGGCATAGCTCATGAATGTGT 58.784 47.619 7.51 0.00 36.69 3.72
2512 4060 3.663176 CAATGGGCCGCGGCATAG 61.663 66.667 46.88 28.61 44.11 2.23
2539 4087 2.952273 AAAAACCGTCAAAGCACGC 58.048 47.368 0.00 0.00 38.52 5.34
2578 4127 2.296190 GGTCAAACTGGTCAATGGGTTC 59.704 50.000 0.00 0.00 0.00 3.62
2579 4128 2.316108 GGTCAAACTGGTCAATGGGTT 58.684 47.619 0.00 0.00 0.00 4.11
2627 4176 9.492973 CTCCAAATGTATGAAACCTTTTCATTT 57.507 29.630 17.01 5.98 39.59 2.32
2628 4177 8.869109 TCTCCAAATGTATGAAACCTTTTCATT 58.131 29.630 17.01 0.57 39.59 2.57
2636 4185 8.925700 GTGATTTTTCTCCAAATGTATGAAACC 58.074 33.333 0.00 0.00 0.00 3.27
2638 4187 8.572185 TCGTGATTTTTCTCCAAATGTATGAAA 58.428 29.630 0.00 0.00 0.00 2.69
2642 4191 8.190784 GGAATCGTGATTTTTCTCCAAATGTAT 58.809 33.333 0.00 0.00 0.00 2.29
2645 4194 6.389091 TGGAATCGTGATTTTTCTCCAAATG 58.611 36.000 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.