Multiple sequence alignment - TraesCS1B01G347000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1B01G347000
chr1B
100.000
3674
0
0
1
3674
575922497
575926170
0.000000e+00
6785
1
TraesCS1B01G347000
chr1D
87.652
3280
202
93
275
3429
426404136
426407337
0.000000e+00
3626
2
TraesCS1B01G347000
chr1D
87.857
140
9
4
126
264
426402626
426402758
1.370000e-34
158
3
TraesCS1B01G347000
chr1D
90.217
92
7
2
3584
3674
426407579
426407669
6.450000e-23
119
4
TraesCS1B01G347000
chr1A
89.863
1904
115
29
1251
3105
521332145
521334019
0.000000e+00
2375
5
TraesCS1B01G347000
chr1A
83.292
401
39
16
3098
3487
521334203
521334586
9.770000e-91
344
6
TraesCS1B01G347000
chr1A
83.175
422
18
25
739
1144
521331713
521332097
1.630000e-88
337
7
TraesCS1B01G347000
chr1A
82.812
384
49
13
2
371
521330971
521331351
9.840000e-86
327
8
TraesCS1B01G347000
chr1A
81.749
263
10
13
490
737
521331439
521331678
6.270000e-43
185
9
TraesCS1B01G347000
chr6A
96.552
87
3
0
1015
1101
544174185
544174271
1.060000e-30
145
10
TraesCS1B01G347000
chr6D
95.402
87
4
0
1015
1101
398178701
398178787
4.950000e-29
139
11
TraesCS1B01G347000
chr7B
96.386
83
3
0
1015
1097
111312962
111313044
1.780000e-28
137
12
TraesCS1B01G347000
chr7D
94.318
88
5
0
1015
1102
148148070
148148157
6.400000e-28
135
13
TraesCS1B01G347000
chr7A
94.318
88
5
0
1015
1102
149303044
149303131
6.400000e-28
135
14
TraesCS1B01G347000
chr3A
83.969
131
17
4
1007
1134
146395813
146395684
4.980000e-24
122
15
TraesCS1B01G347000
chr3D
89.474
95
10
0
1007
1101
132608063
132607969
1.790000e-23
121
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1B01G347000
chr1B
575922497
575926170
3673
False
6785.0
6785
100.000000
1
3674
1
chr1B.!!$F1
3673
1
TraesCS1B01G347000
chr1D
426402626
426407669
5043
False
1301.0
3626
88.575333
126
3674
3
chr1D.!!$F1
3548
2
TraesCS1B01G347000
chr1A
521330971
521334586
3615
False
713.6
2375
84.178200
2
3487
5
chr1A.!!$F1
3485
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
924
2378
0.036010
TGAGCAGTAGCAAAGGGAGC
60.036
55.0
0.00
0.00
45.49
4.70
F
1846
3370
0.101219
GTCCCGATAGTTAACGGCGT
59.899
55.0
6.77
6.77
46.59
5.68
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2428
3970
0.394565
AGGTGACCAGTGAGCAAGAC
59.605
55.0
3.63
0.0
0.0
3.01
R
3424
5208
0.179018
AACCTTTGAGACGCTGCCTT
60.179
50.0
0.00
0.0
0.0
4.35
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
27
28
4.275810
TCACTCCTGCTAATAGTAACCGT
58.724
43.478
0.00
0.00
0.00
4.83
31
32
6.474751
CACTCCTGCTAATAGTAACCGTTTAC
59.525
42.308
0.00
0.00
38.34
2.01
36
37
6.258160
TGCTAATAGTAACCGTTTACGACTC
58.742
40.000
3.46
0.00
42.28
3.36
46
47
2.414293
CGTTTACGACTCTACTGCTGCT
60.414
50.000
0.00
0.00
43.02
4.24
53
54
1.071385
ACTCTACTGCTGCTGTTTGCT
59.929
47.619
17.29
0.00
43.37
3.91
54
55
2.149578
CTCTACTGCTGCTGTTTGCTT
58.850
47.619
17.29
0.00
43.37
3.91
56
57
2.149578
CTACTGCTGCTGTTTGCTTCT
58.850
47.619
17.29
0.00
43.37
2.85
64
65
1.538950
GCTGTTTGCTTCTTGGAGAGG
59.461
52.381
0.00
0.00
38.95
3.69
66
67
3.072944
CTGTTTGCTTCTTGGAGAGGAG
58.927
50.000
0.00
0.00
33.71
3.69
68
69
2.810852
GTTTGCTTCTTGGAGAGGAGTG
59.189
50.000
0.00
0.00
33.07
3.51
70
71
0.980423
GCTTCTTGGAGAGGAGTGGT
59.020
55.000
0.00
0.00
33.07
4.16
72
73
2.567615
GCTTCTTGGAGAGGAGTGGTAA
59.432
50.000
0.00
0.00
33.07
2.85
73
74
3.008049
GCTTCTTGGAGAGGAGTGGTAAA
59.992
47.826
0.00
0.00
33.07
2.01
74
75
4.323868
GCTTCTTGGAGAGGAGTGGTAAAT
60.324
45.833
0.00
0.00
33.07
1.40
75
76
5.422214
TTCTTGGAGAGGAGTGGTAAATC
57.578
43.478
0.00
0.00
0.00
2.17
76
77
3.447586
TCTTGGAGAGGAGTGGTAAATCG
59.552
47.826
0.00
0.00
0.00
3.34
77
78
2.108168
TGGAGAGGAGTGGTAAATCGG
58.892
52.381
0.00
0.00
0.00
4.18
86
87
2.531376
GGTAAATCGGAAGCGGGCG
61.531
63.158
0.00
0.00
0.00
6.13
97
98
4.919987
GCGGGCGCGTACTACTCC
62.920
72.222
24.70
0.00
0.00
3.85
98
99
3.207669
CGGGCGCGTACTACTCCT
61.208
66.667
15.94
0.00
0.00
3.69
105
106
1.063174
CGCGTACTACTCCTGGTACAC
59.937
57.143
0.00
0.00
38.42
2.90
117
118
0.324368
TGGTACACGCCAGGAGATCT
60.324
55.000
0.00
0.00
33.97
2.75
120
121
2.541556
GTACACGCCAGGAGATCTTTC
58.458
52.381
0.00
0.00
0.00
2.62
121
122
1.270907
ACACGCCAGGAGATCTTTCT
58.729
50.000
0.00
0.00
33.88
2.52
124
125
2.675348
CACGCCAGGAGATCTTTCTTTC
59.325
50.000
0.00
0.00
30.30
2.62
199
205
4.862574
TCGAATTCGAAATCAGGTGTACAG
59.137
41.667
27.36
0.00
46.30
2.74
234
240
2.547211
CGTACTACCGCTAGCACTACAT
59.453
50.000
16.45
0.00
0.00
2.29
268
1640
3.375911
GTACTACTCGTACTCGCGTTT
57.624
47.619
5.77
0.00
44.09
3.60
271
1643
2.349886
ACTACTCGTACTCGCGTTTAGG
59.650
50.000
5.77
4.59
36.42
2.69
272
1644
1.442769
ACTCGTACTCGCGTTTAGGA
58.557
50.000
5.77
8.78
30.66
2.94
273
1645
2.012673
ACTCGTACTCGCGTTTAGGAT
58.987
47.619
5.77
0.00
30.66
3.24
279
1651
3.107642
ACTCGCGTTTAGGATATTGGG
57.892
47.619
5.77
0.00
0.00
4.12
292
1667
6.018433
AGGATATTGGGAGCTGTACATTTT
57.982
37.500
0.00
0.00
0.00
1.82
293
1668
6.435164
AGGATATTGGGAGCTGTACATTTTT
58.565
36.000
0.00
0.00
0.00
1.94
294
1669
7.582719
AGGATATTGGGAGCTGTACATTTTTA
58.417
34.615
0.00
0.00
0.00
1.52
295
1670
7.502561
AGGATATTGGGAGCTGTACATTTTTAC
59.497
37.037
0.00
0.00
0.00
2.01
297
1672
5.957842
TTGGGAGCTGTACATTTTTACTG
57.042
39.130
0.00
0.00
0.00
2.74
298
1673
4.980573
TGGGAGCTGTACATTTTTACTGT
58.019
39.130
0.00
0.00
0.00
3.55
299
1674
5.001232
TGGGAGCTGTACATTTTTACTGTC
58.999
41.667
0.00
0.00
0.00
3.51
300
1675
5.001232
GGGAGCTGTACATTTTTACTGTCA
58.999
41.667
0.00
0.00
0.00
3.58
302
1677
5.932303
GGAGCTGTACATTTTTACTGTCAGA
59.068
40.000
6.91
0.00
30.25
3.27
303
1678
6.128526
GGAGCTGTACATTTTTACTGTCAGAC
60.129
42.308
6.91
0.00
30.25
3.51
304
1679
5.405571
AGCTGTACATTTTTACTGTCAGACG
59.594
40.000
6.91
0.00
30.25
4.18
306
1681
6.615839
GCTGTACATTTTTACTGTCAGACGTC
60.616
42.308
7.70
7.70
30.25
4.34
307
1682
4.966850
ACATTTTTACTGTCAGACGTCG
57.033
40.909
10.46
5.48
0.00
5.12
309
1684
1.401530
TTTTACTGTCAGACGTCGCG
58.598
50.000
10.46
0.00
0.00
5.87
330
1707
3.421844
GCATTGGGACTCTAAACAAGGT
58.578
45.455
0.00
0.00
0.00
3.50
332
1709
3.782656
TTGGGACTCTAAACAAGGTCC
57.217
47.619
0.00
0.00
41.38
4.46
352
1729
2.606795
CCGTCTCGTTTAACCCGTTGTA
60.607
50.000
0.00
0.00
0.00
2.41
354
1731
2.731451
GTCTCGTTTAACCCGTTGTACC
59.269
50.000
0.00
0.00
0.00
3.34
394
1772
5.079998
AGGTGGGAGAAAAAGAAAATCCT
57.920
39.130
0.00
0.00
0.00
3.24
416
1795
5.981915
CCTCTTGAAAGAAAAAGAAGGCTTG
59.018
40.000
3.46
0.00
34.03
4.01
453
1832
3.715097
GCTCCTGGTCTGCTGCCT
61.715
66.667
0.00
0.00
0.00
4.75
454
1833
2.583520
CTCCTGGTCTGCTGCCTC
59.416
66.667
0.00
0.00
0.00
4.70
455
1834
2.203832
TCCTGGTCTGCTGCCTCA
60.204
61.111
0.00
0.00
0.00
3.86
456
1835
2.046507
CCTGGTCTGCTGCCTCAC
60.047
66.667
0.00
0.00
0.00
3.51
457
1836
2.591072
CCTGGTCTGCTGCCTCACT
61.591
63.158
0.00
0.00
0.00
3.41
470
1849
1.085091
CCTCACTCAGCTTCACATGC
58.915
55.000
0.00
0.00
0.00
4.06
471
1850
0.720027
CTCACTCAGCTTCACATGCG
59.280
55.000
0.00
0.00
35.28
4.73
472
1851
0.318120
TCACTCAGCTTCACATGCGA
59.682
50.000
0.00
0.00
35.28
5.10
473
1852
0.720027
CACTCAGCTTCACATGCGAG
59.280
55.000
0.00
0.00
37.23
5.03
474
1853
0.605083
ACTCAGCTTCACATGCGAGA
59.395
50.000
0.00
0.00
36.11
4.04
475
1854
1.001293
ACTCAGCTTCACATGCGAGAA
59.999
47.619
0.00
0.00
36.11
2.87
476
1855
1.392853
CTCAGCTTCACATGCGAGAAC
59.607
52.381
0.00
0.00
35.09
3.01
477
1856
0.094216
CAGCTTCACATGCGAGAACG
59.906
55.000
0.00
0.00
42.93
3.95
478
1857
0.038251
AGCTTCACATGCGAGAACGA
60.038
50.000
0.00
0.00
42.66
3.85
479
1858
0.368227
GCTTCACATGCGAGAACGAG
59.632
55.000
0.00
0.00
42.66
4.18
480
1859
0.368227
CTTCACATGCGAGAACGAGC
59.632
55.000
0.00
0.00
42.66
5.03
486
1865
1.369839
ATGCGAGAACGAGCGAGAGA
61.370
55.000
0.00
0.00
42.66
3.10
512
1891
2.358003
GAGACCTGCGCAGTGCTT
60.358
61.111
33.75
17.41
46.63
3.91
513
1892
1.963338
GAGACCTGCGCAGTGCTTT
60.963
57.895
33.75
15.65
46.63
3.51
514
1893
1.905922
GAGACCTGCGCAGTGCTTTC
61.906
60.000
33.75
20.75
46.63
2.62
515
1894
2.203195
ACCTGCGCAGTGCTTTCA
60.203
55.556
33.75
7.42
46.63
2.69
557
1936
3.058160
GCCTGTGCGCCTGTGATT
61.058
61.111
4.18
0.00
0.00
2.57
558
1937
2.872557
CCTGTGCGCCTGTGATTG
59.127
61.111
4.18
0.00
0.00
2.67
559
1938
1.968017
CCTGTGCGCCTGTGATTGT
60.968
57.895
4.18
0.00
0.00
2.71
560
1939
1.499056
CTGTGCGCCTGTGATTGTC
59.501
57.895
4.18
0.00
0.00
3.18
561
1940
0.952497
CTGTGCGCCTGTGATTGTCT
60.952
55.000
4.18
0.00
0.00
3.41
731
2136
3.422303
GCATTCACGCCACGCTCA
61.422
61.111
0.00
0.00
0.00
4.26
774
2212
0.602905
CAGAGGCCGGTCGTTTCTTT
60.603
55.000
1.90
0.00
0.00
2.52
829
2272
2.034221
ACGGCTCCCCTTGCTTTC
59.966
61.111
0.00
0.00
0.00
2.62
830
2273
2.751837
CGGCTCCCCTTGCTTTCC
60.752
66.667
0.00
0.00
0.00
3.13
832
2275
2.766660
GCTCCCCTTGCTTTCCCT
59.233
61.111
0.00
0.00
0.00
4.20
867
2310
2.393646
AGTATCCTTGTCTCTGGCTCC
58.606
52.381
0.00
0.00
0.00
4.70
868
2311
1.414550
GTATCCTTGTCTCTGGCTCCC
59.585
57.143
0.00
0.00
0.00
4.30
916
2370
3.390521
CCCCCGTGAGCAGTAGCA
61.391
66.667
0.00
0.00
45.49
3.49
917
2371
2.662596
CCCCGTGAGCAGTAGCAA
59.337
61.111
0.00
0.00
45.49
3.91
918
2372
1.003839
CCCCGTGAGCAGTAGCAAA
60.004
57.895
0.00
0.00
45.49
3.68
919
2373
1.021390
CCCCGTGAGCAGTAGCAAAG
61.021
60.000
0.00
0.00
45.49
2.77
920
2374
1.021390
CCCGTGAGCAGTAGCAAAGG
61.021
60.000
0.00
0.00
45.49
3.11
921
2375
1.021390
CCGTGAGCAGTAGCAAAGGG
61.021
60.000
0.00
0.00
45.49
3.95
922
2376
0.037326
CGTGAGCAGTAGCAAAGGGA
60.037
55.000
0.00
0.00
45.49
4.20
923
2377
1.731720
GTGAGCAGTAGCAAAGGGAG
58.268
55.000
0.00
0.00
45.49
4.30
924
2378
0.036010
TGAGCAGTAGCAAAGGGAGC
60.036
55.000
0.00
0.00
45.49
4.70
925
2379
1.078848
AGCAGTAGCAAAGGGAGCG
60.079
57.895
0.00
0.00
45.49
5.03
926
2380
1.079127
GCAGTAGCAAAGGGAGCGA
60.079
57.895
0.00
0.00
41.58
4.93
927
2381
1.086634
GCAGTAGCAAAGGGAGCGAG
61.087
60.000
0.00
0.00
41.58
5.03
928
2382
1.086634
CAGTAGCAAAGGGAGCGAGC
61.087
60.000
0.00
0.00
37.01
5.03
929
2383
1.219393
GTAGCAAAGGGAGCGAGCT
59.781
57.895
0.00
0.00
39.22
4.09
951
2428
1.964891
GCTGCTGCTCTTGCTGTGA
60.965
57.895
8.53
0.00
39.81
3.58
979
2456
1.337260
CCGTGGAAGTGAAGTGAGGAG
60.337
57.143
0.00
0.00
0.00
3.69
981
2458
0.687354
TGGAAGTGAAGTGAGGAGGC
59.313
55.000
0.00
0.00
0.00
4.70
983
2460
1.004440
AAGTGAAGTGAGGAGGCGC
60.004
57.895
0.00
0.00
0.00
6.53
1017
2497
2.037772
AGAGATGAGCGTGACCAAGTTT
59.962
45.455
0.00
0.00
0.00
2.66
1121
2601
3.216371
TCCCTCCCCCAACCCTCT
61.216
66.667
0.00
0.00
0.00
3.69
1146
2626
2.438763
TCCTCTTCTCCTCCTACCTACG
59.561
54.545
0.00
0.00
0.00
3.51
1148
2628
1.493871
TCTTCTCCTCCTACCTACGGG
59.506
57.143
0.00
0.00
38.88
5.28
1149
2629
0.106318
TTCTCCTCCTACCTACGGGC
60.106
60.000
0.00
0.00
35.63
6.13
1150
2630
0.992431
TCTCCTCCTACCTACGGGCT
60.992
60.000
0.00
0.00
35.63
5.19
1151
2631
0.769873
CTCCTCCTACCTACGGGCTA
59.230
60.000
0.00
0.00
35.63
3.93
1152
2632
0.769873
TCCTCCTACCTACGGGCTAG
59.230
60.000
0.00
0.00
35.63
3.42
1162
2642
0.630673
TACGGGCTAGGTAGTTCCCA
59.369
55.000
2.29
0.00
38.68
4.37
1181
2661
1.953686
CATCTTCCTCCTCTCGACCTC
59.046
57.143
0.00
0.00
0.00
3.85
1186
2666
1.921049
TCCTCCTCTCGACCTCCTTTA
59.079
52.381
0.00
0.00
0.00
1.85
1187
2667
2.025898
CCTCCTCTCGACCTCCTTTAC
58.974
57.143
0.00
0.00
0.00
2.01
1188
2668
2.025898
CTCCTCTCGACCTCCTTTACC
58.974
57.143
0.00
0.00
0.00
2.85
1236
2717
3.557903
TTGGGCTCACTCTGCTGGC
62.558
63.158
0.00
0.00
0.00
4.85
1347
2828
4.139234
GGGACACCGCCGGTACTC
62.139
72.222
9.25
6.52
32.11
2.59
1360
2841
1.415200
GGTACTCACTCCATCCCTCC
58.585
60.000
0.00
0.00
0.00
4.30
1374
2855
0.698238
CCCTCCTCATTTCCACCACA
59.302
55.000
0.00
0.00
0.00
4.17
1381
2862
3.197766
CCTCATTTCCACCACAGCTACTA
59.802
47.826
0.00
0.00
0.00
1.82
1437
2940
0.308993
GGTCTGTGCTGTGTTTGCTC
59.691
55.000
0.00
0.00
0.00
4.26
1611
3123
6.528072
GGCACATTAGTTCAGAAATTACTTGC
59.472
38.462
0.00
0.00
0.00
4.01
1623
3135
7.613022
TCAGAAATTACTTGCTCCAGATTTGAT
59.387
33.333
0.00
0.00
0.00
2.57
1634
3146
3.760151
TCCAGATTTGATTGTGCTTGAGG
59.240
43.478
0.00
0.00
0.00
3.86
1655
3167
5.262588
GGTTTCACCTGAACTGAATGTTT
57.737
39.130
0.00
0.00
35.54
2.83
1657
3169
5.519927
GGTTTCACCTGAACTGAATGTTTTG
59.480
40.000
0.00
0.00
35.54
2.44
1684
3204
3.710326
TGATAATTCGGTCTCTGGTCG
57.290
47.619
0.00
0.00
0.00
4.79
1737
3257
1.877443
CCGAACGTTCCCATTGTTCTT
59.123
47.619
22.07
0.00
39.78
2.52
1759
3279
0.116342
TGGGACCAAGCTAGGTGAGA
59.884
55.000
0.00
0.00
43.38
3.27
1805
3329
2.422597
TCGATGAACTTTCCGCAATGT
58.577
42.857
0.00
0.00
0.00
2.71
1841
3365
4.873827
TGCATCTTTGTCCCGATAGTTAAC
59.126
41.667
0.00
0.00
0.00
2.01
1842
3366
4.025979
GCATCTTTGTCCCGATAGTTAACG
60.026
45.833
0.00
0.00
0.00
3.18
1846
3370
0.101219
GTCCCGATAGTTAACGGCGT
59.899
55.000
6.77
6.77
46.59
5.68
2010
3538
3.011144
TGCCATCTTCTTCCCCATTGTTA
59.989
43.478
0.00
0.00
0.00
2.41
2013
3541
5.221322
GCCATCTTCTTCCCCATTGTTATTC
60.221
44.000
0.00
0.00
0.00
1.75
2259
3795
1.671054
CGACACCGCCATCAAGGTT
60.671
57.895
0.00
0.00
39.00
3.50
2345
3881
2.785540
TGCTCCATCATGTAAGCACA
57.214
45.000
7.67
0.00
39.69
4.57
2357
3894
0.690762
TAAGCACACCCCACCTCTTC
59.309
55.000
0.00
0.00
0.00
2.87
2367
3904
3.107601
CCCCACCTCTTCTCATTCACTA
58.892
50.000
0.00
0.00
0.00
2.74
2374
3911
4.441356
CCTCTTCTCATTCACTAGCTCCAC
60.441
50.000
0.00
0.00
0.00
4.02
2402
3944
4.700213
ACTGTATAATGGTGTGAGCAAACC
59.300
41.667
2.77
2.77
36.96
3.27
2428
3970
4.703575
TCTCCAGATTTGCTCCATGAAAAG
59.296
41.667
0.00
0.00
0.00
2.27
2447
3989
0.394565
GTCTTGCTCACTGGTCACCT
59.605
55.000
0.00
0.00
0.00
4.00
2448
3990
1.131638
TCTTGCTCACTGGTCACCTT
58.868
50.000
0.00
0.00
0.00
3.50
2449
3991
2.037251
GTCTTGCTCACTGGTCACCTTA
59.963
50.000
0.00
0.00
0.00
2.69
2470
4012
7.038373
ACCTTATTACCTCAAAATTGGCACATT
60.038
33.333
0.00
0.00
39.30
2.71
2471
4013
7.492344
CCTTATTACCTCAAAATTGGCACATTC
59.508
37.037
0.00
0.00
39.30
2.67
2472
4014
5.798125
TTACCTCAAAATTGGCACATTCA
57.202
34.783
0.00
0.00
39.30
2.57
2488
4030
6.072838
GGCACATTCATCAGTTCGATTATGAT
60.073
38.462
2.62
2.62
34.02
2.45
2526
4083
6.423604
GCTGCTTAGATCAGATTTTAGAGGTC
59.576
42.308
0.00
0.00
33.54
3.85
2531
4088
9.528018
CTTAGATCAGATTTTAGAGGTCAACTC
57.472
37.037
0.00
0.00
46.98
3.01
2574
4134
7.923888
TGATTTTCCAAAATTTCAAATTCGCA
58.076
26.923
0.00
0.00
38.64
5.10
2600
4161
2.849942
TGCAGTGTTCTTGCACAGTAT
58.150
42.857
0.00
0.00
41.52
2.12
2619
4180
2.350057
TAGGAGTCCTGATCCTGTCG
57.650
55.000
22.69
0.00
46.81
4.35
2625
4186
1.135333
GTCCTGATCCTGTCGTTCTCC
59.865
57.143
0.00
0.00
0.00
3.71
2676
4237
3.373020
CACGTGTGCTGCTTGAATC
57.627
52.632
7.58
0.00
0.00
2.52
2726
4287
2.354704
GCATGGTGTAGTAGGCAAGTCA
60.355
50.000
0.00
0.00
0.00
3.41
2781
4342
6.340962
TGCTTCTGTTCTGTTTAGCTACTA
57.659
37.500
0.00
0.00
0.00
1.82
2782
4343
6.390721
TGCTTCTGTTCTGTTTAGCTACTAG
58.609
40.000
0.00
0.00
0.00
2.57
2783
4344
5.289917
GCTTCTGTTCTGTTTAGCTACTAGC
59.710
44.000
0.00
0.00
42.84
3.42
2828
4389
6.768381
GGTTTCTACTTCCAATCCAATCCTAG
59.232
42.308
0.00
0.00
0.00
3.02
2934
4508
9.736023
GCAAGCTATAAGTTTATTGTTAGCATT
57.264
29.630
0.00
0.00
0.00
3.56
2981
4556
2.997986
GCAATTGGTGGCAGATTGAAAG
59.002
45.455
17.43
0.00
33.67
2.62
2986
4561
2.092323
GGTGGCAGATTGAAAGGTACC
58.908
52.381
2.73
2.73
0.00
3.34
3012
4587
4.847757
CACAAGTGTGCTGAATATCAAACG
59.152
41.667
0.00
0.00
39.39
3.60
3025
4600
0.250727
TCAAACGGCAAGAAGGGAGG
60.251
55.000
0.00
0.00
0.00
4.30
3079
4655
1.065854
TCTTGCTAGCTGCCTCCTTTC
60.066
52.381
17.23
0.00
42.00
2.62
3113
4689
3.686726
GCCATTGGTGAAGTAGACTTGAG
59.313
47.826
4.26
0.00
36.11
3.02
3115
4691
4.318332
CATTGGTGAAGTAGACTTGAGCA
58.682
43.478
9.27
9.27
43.64
4.26
3125
4891
6.305693
AGTAGACTTGAGCAAATGTTGAAC
57.694
37.500
0.00
0.00
0.00
3.18
3137
4903
0.482446
TGTTGAACAAGGGGGCATCT
59.518
50.000
0.00
0.00
0.00
2.90
3138
4904
0.890683
GTTGAACAAGGGGGCATCTG
59.109
55.000
0.00
0.00
0.00
2.90
3139
4905
0.482446
TTGAACAAGGGGGCATCTGT
59.518
50.000
0.00
0.00
0.00
3.41
3140
4906
0.038166
TGAACAAGGGGGCATCTGTC
59.962
55.000
0.00
0.00
0.00
3.51
3142
4908
0.482446
AACAAGGGGGCATCTGTCAA
59.518
50.000
0.00
0.00
0.00
3.18
3162
4929
1.875009
AGTAGTCGTCGTCACAGTCA
58.125
50.000
0.00
0.00
0.00
3.41
3163
4930
1.799403
AGTAGTCGTCGTCACAGTCAG
59.201
52.381
0.00
0.00
0.00
3.51
3206
4978
0.035630
CTGGAAGGAGCAAGTGAGGG
60.036
60.000
0.00
0.00
0.00
4.30
3221
4993
3.118038
AGTGAGGGTGTAGCAGAAAAACA
60.118
43.478
0.00
0.00
0.00
2.83
3230
5002
0.234884
GCAGAAAAACAGGTCGACGG
59.765
55.000
9.92
6.90
0.00
4.79
3234
5006
3.250040
CAGAAAAACAGGTCGACGGAATT
59.750
43.478
9.92
0.00
0.00
2.17
3277
5049
2.093235
CCCTCCTTTAGCTTCAGTCTGG
60.093
54.545
0.00
0.00
0.00
3.86
3278
5050
2.569404
CCTCCTTTAGCTTCAGTCTGGT
59.431
50.000
0.00
0.00
0.00
4.00
3289
5061
1.762370
TCAGTCTGGTTGAAGTGCTCA
59.238
47.619
0.00
0.00
0.00
4.26
3302
5074
4.156556
TGAAGTGCTCATCAAATACCTTGC
59.843
41.667
0.00
0.00
34.76
4.01
3340
5124
1.271597
GGCATCTCCAGAACAAGTGGT
60.272
52.381
0.00
0.00
36.37
4.16
3361
5145
5.047377
TGGTAACATGAAAATTGGAGGAAGC
60.047
40.000
0.00
0.00
46.17
3.86
3388
5172
2.238521
TCCCTGAAAATGTCACCTTGC
58.761
47.619
0.00
0.00
31.13
4.01
3389
5173
1.273327
CCCTGAAAATGTCACCTTGCC
59.727
52.381
0.00
0.00
31.13
4.52
3393
5177
1.615392
GAAAATGTCACCTTGCCTGCT
59.385
47.619
0.00
0.00
0.00
4.24
3397
5181
0.250467
TGTCACCTTGCCTGCTCTTC
60.250
55.000
0.00
0.00
0.00
2.87
3398
5182
0.957888
GTCACCTTGCCTGCTCTTCC
60.958
60.000
0.00
0.00
0.00
3.46
3418
5202
5.528600
TCCCATTGGAATAACTCCTGAAA
57.471
39.130
3.62
0.00
45.64
2.69
3424
5208
3.325425
TGGAATAACTCCTGAAACCGACA
59.675
43.478
0.00
0.00
45.64
4.35
3429
5213
0.250295
CTCCTGAAACCGACAAGGCA
60.250
55.000
0.00
0.00
46.52
4.75
3431
5215
1.576421
CTGAAACCGACAAGGCAGC
59.424
57.895
0.00
0.00
46.52
5.25
3433
5217
2.203153
AAACCGACAAGGCAGCGT
60.203
55.556
0.00
0.00
46.52
5.07
3437
5221
2.049156
CGACAAGGCAGCGTCTCA
60.049
61.111
0.00
0.00
0.00
3.27
3438
5222
1.664649
CGACAAGGCAGCGTCTCAA
60.665
57.895
0.00
0.00
0.00
3.02
3439
5223
1.221466
CGACAAGGCAGCGTCTCAAA
61.221
55.000
0.00
0.00
0.00
2.69
3440
5224
0.514691
GACAAGGCAGCGTCTCAAAG
59.485
55.000
0.00
0.00
0.00
2.77
3441
5225
0.886490
ACAAGGCAGCGTCTCAAAGG
60.886
55.000
0.00
0.00
0.00
3.11
3442
5226
0.886490
CAAGGCAGCGTCTCAAAGGT
60.886
55.000
0.00
0.00
0.00
3.50
3443
5227
0.179018
AAGGCAGCGTCTCAAAGGTT
60.179
50.000
0.00
0.00
0.00
3.50
3444
5228
0.179018
AGGCAGCGTCTCAAAGGTTT
60.179
50.000
0.00
0.00
0.00
3.27
3466
5250
1.596260
CGTAGCAGCATGGATCAACAG
59.404
52.381
0.00
0.00
35.86
3.16
3491
5275
4.024893
GTCCATACTGTTATGTGCATTCCG
60.025
45.833
0.00
0.00
34.27
4.30
3505
5289
2.666619
GCATTCCGTTGTTGAGCTCAAG
60.667
50.000
29.13
16.86
36.39
3.02
3506
5290
0.944386
TTCCGTTGTTGAGCTCAAGC
59.056
50.000
29.13
22.00
36.39
4.01
3507
5291
0.179059
TCCGTTGTTGAGCTCAAGCA
60.179
50.000
29.13
24.07
45.16
3.91
3510
5294
2.287788
CCGTTGTTGAGCTCAAGCAAAT
60.288
45.455
29.43
0.00
45.16
2.32
3511
5295
3.374745
CGTTGTTGAGCTCAAGCAAATT
58.625
40.909
29.43
0.00
45.16
1.82
3513
5297
4.614946
GTTGTTGAGCTCAAGCAAATTCT
58.385
39.130
29.43
0.00
45.16
2.40
3514
5298
4.233123
TGTTGAGCTCAAGCAAATTCTG
57.767
40.909
29.13
0.00
45.16
3.02
3527
5311
4.843220
CAAATTCTGCACTCCAAGAGTT
57.157
40.909
0.00
0.00
41.37
3.01
3528
5312
4.791974
CAAATTCTGCACTCCAAGAGTTC
58.208
43.478
0.00
0.00
41.37
3.01
3529
5313
4.363991
AATTCTGCACTCCAAGAGTTCT
57.636
40.909
0.00
0.00
41.37
3.01
3530
5314
2.827800
TCTGCACTCCAAGAGTTCTG
57.172
50.000
0.00
0.00
41.37
3.02
3531
5315
2.042464
TCTGCACTCCAAGAGTTCTGT
58.958
47.619
0.00
0.00
41.37
3.41
3532
5316
2.141517
CTGCACTCCAAGAGTTCTGTG
58.858
52.381
0.00
0.00
41.37
3.66
3533
5317
0.871057
GCACTCCAAGAGTTCTGTGC
59.129
55.000
6.57
6.57
41.37
4.57
3534
5318
1.811558
GCACTCCAAGAGTTCTGTGCA
60.812
52.381
14.03
0.00
46.64
4.57
3535
5319
2.141517
CACTCCAAGAGTTCTGTGCAG
58.858
52.381
0.00
0.00
41.37
4.41
3536
5320
1.765314
ACTCCAAGAGTTCTGTGCAGT
59.235
47.619
0.00
0.00
40.28
4.40
3537
5321
2.141517
CTCCAAGAGTTCTGTGCAGTG
58.858
52.381
0.00
0.00
0.00
3.66
3538
5322
0.590195
CCAAGAGTTCTGTGCAGTGC
59.410
55.000
8.58
8.58
0.00
4.40
3539
5323
1.302366
CAAGAGTTCTGTGCAGTGCA
58.698
50.000
15.37
15.37
35.60
4.57
3571
5355
6.961360
ATACTTGATCAACGAGGATGTCTA
57.039
37.500
3.38
0.00
32.59
2.59
3572
5356
5.255710
ACTTGATCAACGAGGATGTCTAG
57.744
43.478
3.38
0.00
34.46
2.43
3598
5540
3.009115
CGCCCCTCCCTCCTTGAA
61.009
66.667
0.00
0.00
0.00
2.69
3635
5577
4.498682
GCAAGTTGCAATCCAATAGCCTAG
60.499
45.833
22.90
0.00
44.26
3.02
3642
5584
2.820059
TCCAATAGCCTAGCATGACG
57.180
50.000
0.00
0.00
0.00
4.35
3645
5587
3.255888
TCCAATAGCCTAGCATGACGTAG
59.744
47.826
0.00
0.00
0.00
3.51
3648
5590
5.473931
CAATAGCCTAGCATGACGTAGATT
58.526
41.667
0.00
0.00
0.00
2.40
3649
5591
3.377346
AGCCTAGCATGACGTAGATTG
57.623
47.619
0.00
0.00
0.00
2.67
3650
5592
2.959030
AGCCTAGCATGACGTAGATTGA
59.041
45.455
0.00
0.00
0.00
2.57
3658
5600
1.822990
TGACGTAGATTGAGGTCACCC
59.177
52.381
0.00
0.00
38.84
4.61
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
6.428799
GTTACTATTAGCAGGAGTGAGTACG
58.571
44.000
0.00
0.00
0.00
3.67
3
4
4.338682
CGGTTACTATTAGCAGGAGTGAGT
59.661
45.833
0.00
0.00
0.00
3.41
9
10
5.356751
TCGTAAACGGTTACTATTAGCAGGA
59.643
40.000
20.45
4.93
37.97
3.86
27
28
2.557056
ACAGCAGCAGTAGAGTCGTAAA
59.443
45.455
0.00
0.00
0.00
2.01
31
32
1.723542
CAAACAGCAGCAGTAGAGTCG
59.276
52.381
0.00
0.00
0.00
4.18
46
47
2.439507
ACTCCTCTCCAAGAAGCAAACA
59.560
45.455
0.00
0.00
0.00
2.83
53
54
4.081642
CGATTTACCACTCCTCTCCAAGAA
60.082
45.833
0.00
0.00
0.00
2.52
54
55
3.447586
CGATTTACCACTCCTCTCCAAGA
59.552
47.826
0.00
0.00
0.00
3.02
56
57
2.500098
CCGATTTACCACTCCTCTCCAA
59.500
50.000
0.00
0.00
0.00
3.53
64
65
1.287425
CCGCTTCCGATTTACCACTC
58.713
55.000
0.00
0.00
36.29
3.51
66
67
1.712018
GCCCGCTTCCGATTTACCAC
61.712
60.000
0.00
0.00
36.29
4.16
68
69
2.531376
CGCCCGCTTCCGATTTACC
61.531
63.158
0.00
0.00
36.29
2.85
70
71
2.893404
GCGCCCGCTTCCGATTTA
60.893
61.111
5.27
0.00
38.26
1.40
76
77
4.197498
TAGTACGCGCCCGCTTCC
62.197
66.667
5.73
0.00
39.32
3.46
77
78
2.953303
GTAGTACGCGCCCGCTTC
60.953
66.667
5.73
1.42
39.32
3.86
86
87
1.063174
CGTGTACCAGGAGTAGTACGC
59.937
57.143
0.00
0.00
43.34
4.42
98
99
0.324368
AGATCTCCTGGCGTGTACCA
60.324
55.000
0.00
0.00
38.29
3.25
105
106
2.284190
GGAAAGAAAGATCTCCTGGCG
58.716
52.381
0.00
0.00
33.77
5.69
117
118
5.825593
AGCATATCTATCCGGGAAAGAAA
57.174
39.130
0.00
0.00
0.00
2.52
120
121
5.413309
AGAAGCATATCTATCCGGGAAAG
57.587
43.478
0.00
0.00
0.00
2.62
121
122
4.082190
CGAGAAGCATATCTATCCGGGAAA
60.082
45.833
0.00
0.00
0.00
3.13
124
125
2.099921
CCGAGAAGCATATCTATCCGGG
59.900
54.545
0.00
0.00
0.00
5.73
191
196
2.264794
CCCTCGTGGCTGTACACC
59.735
66.667
0.00
0.00
38.11
4.16
222
228
4.724303
CACCTCGTATATGTAGTGCTAGC
58.276
47.826
8.10
8.10
0.00
3.42
234
240
5.010112
ACGAGTAGTACTAGCACCTCGTATA
59.990
44.000
29.90
0.00
43.10
1.47
264
1636
4.073293
ACAGCTCCCAATATCCTAAACG
57.927
45.455
0.00
0.00
0.00
3.60
268
1640
6.763715
AAATGTACAGCTCCCAATATCCTA
57.236
37.500
0.33
0.00
0.00
2.94
271
1643
8.345565
CAGTAAAAATGTACAGCTCCCAATATC
58.654
37.037
0.33
0.00
0.00
1.63
272
1644
7.834181
ACAGTAAAAATGTACAGCTCCCAATAT
59.166
33.333
0.33
0.00
0.00
1.28
273
1645
7.172342
ACAGTAAAAATGTACAGCTCCCAATA
58.828
34.615
0.33
0.00
0.00
1.90
279
1651
6.400091
CGTCTGACAGTAAAAATGTACAGCTC
60.400
42.308
8.73
0.00
31.55
4.09
292
1667
1.441515
GCGCGACGTCTGACAGTAA
60.442
57.895
12.10
0.00
0.00
2.24
293
1668
1.918868
ATGCGCGACGTCTGACAGTA
61.919
55.000
12.10
0.25
0.00
2.74
294
1669
2.749110
AATGCGCGACGTCTGACAGT
62.749
55.000
12.10
4.89
0.00
3.55
295
1670
2.088763
AATGCGCGACGTCTGACAG
61.089
57.895
12.10
0.00
0.00
3.51
297
1672
2.391821
CAATGCGCGACGTCTGAC
59.608
61.111
12.10
2.79
0.00
3.51
298
1673
2.809174
CCAATGCGCGACGTCTGA
60.809
61.111
12.10
0.00
0.00
3.27
299
1674
3.853330
CCCAATGCGCGACGTCTG
61.853
66.667
12.10
8.46
0.00
3.51
300
1675
4.063967
TCCCAATGCGCGACGTCT
62.064
61.111
12.10
0.00
0.00
4.18
302
1677
4.373116
AGTCCCAATGCGCGACGT
62.373
61.111
12.10
0.00
0.00
4.34
303
1678
2.607668
TAGAGTCCCAATGCGCGACG
62.608
60.000
12.10
0.00
0.00
5.12
304
1679
0.459585
TTAGAGTCCCAATGCGCGAC
60.460
55.000
12.10
3.24
0.00
5.19
306
1681
0.373716
GTTTAGAGTCCCAATGCGCG
59.626
55.000
0.00
0.00
0.00
6.86
307
1682
1.448985
TGTTTAGAGTCCCAATGCGC
58.551
50.000
0.00
0.00
0.00
6.09
309
1684
3.421844
ACCTTGTTTAGAGTCCCAATGC
58.578
45.455
0.00
0.00
0.00
3.56
320
1697
2.719426
ACGAGACGGACCTTGTTTAG
57.281
50.000
0.00
0.00
0.00
1.85
321
1698
3.457610
AAACGAGACGGACCTTGTTTA
57.542
42.857
14.44
0.00
44.60
2.01
330
1707
0.673437
AACGGGTTAAACGAGACGGA
59.327
50.000
7.70
0.00
34.93
4.69
332
1709
1.490621
ACAACGGGTTAAACGAGACG
58.509
50.000
7.70
0.00
34.93
4.18
352
1729
5.067936
CACCTCGTAATGATTCTCTAGTGGT
59.932
44.000
0.00
0.00
0.00
4.16
354
1731
5.508153
CCCACCTCGTAATGATTCTCTAGTG
60.508
48.000
0.00
0.00
0.00
2.74
394
1772
6.773976
TCAAGCCTTCTTTTTCTTTCAAGA
57.226
33.333
0.00
0.00
0.00
3.02
453
1832
0.318120
TCGCATGTGAAGCTGAGTGA
59.682
50.000
6.47
0.00
0.00
3.41
454
1833
0.720027
CTCGCATGTGAAGCTGAGTG
59.280
55.000
10.71
0.00
32.21
3.51
455
1834
0.605083
TCTCGCATGTGAAGCTGAGT
59.395
50.000
10.71
0.00
35.59
3.41
456
1835
1.392853
GTTCTCGCATGTGAAGCTGAG
59.607
52.381
10.71
0.00
35.49
3.35
457
1836
1.432514
GTTCTCGCATGTGAAGCTGA
58.567
50.000
10.71
1.03
0.00
4.26
470
1849
0.300491
CTCTCTCTCGCTCGTTCTCG
59.700
60.000
0.00
0.00
38.55
4.04
471
1850
1.593006
CTCTCTCTCTCGCTCGTTCTC
59.407
57.143
0.00
0.00
0.00
2.87
472
1851
1.206132
TCTCTCTCTCTCGCTCGTTCT
59.794
52.381
0.00
0.00
0.00
3.01
473
1852
1.593006
CTCTCTCTCTCTCGCTCGTTC
59.407
57.143
0.00
0.00
0.00
3.95
474
1853
1.206132
TCTCTCTCTCTCTCGCTCGTT
59.794
52.381
0.00
0.00
0.00
3.85
475
1854
0.821517
TCTCTCTCTCTCTCGCTCGT
59.178
55.000
0.00
0.00
0.00
4.18
476
1855
1.067060
TCTCTCTCTCTCTCTCGCTCG
59.933
57.143
0.00
0.00
0.00
5.03
477
1856
2.362397
TCTCTCTCTCTCTCTCTCGCTC
59.638
54.545
0.00
0.00
0.00
5.03
478
1857
2.101582
GTCTCTCTCTCTCTCTCTCGCT
59.898
54.545
0.00
0.00
0.00
4.93
479
1858
2.474816
GTCTCTCTCTCTCTCTCTCGC
58.525
57.143
0.00
0.00
0.00
5.03
480
1859
2.695666
AGGTCTCTCTCTCTCTCTCTCG
59.304
54.545
0.00
0.00
0.00
4.04
486
1865
0.748005
GCGCAGGTCTCTCTCTCTCT
60.748
60.000
0.30
0.00
0.00
3.10
512
1891
2.023673
GGACGGCCATGAATGAATGAA
58.976
47.619
0.00
0.00
0.00
2.57
513
1892
1.064832
TGGACGGCCATGAATGAATGA
60.065
47.619
5.41
0.00
39.92
2.57
514
1893
1.391577
TGGACGGCCATGAATGAATG
58.608
50.000
5.41
0.00
39.92
2.67
515
1894
3.901087
TGGACGGCCATGAATGAAT
57.099
47.368
5.41
0.00
39.92
2.57
557
1936
1.447217
CACTGTGGGCAGACAGACA
59.553
57.895
19.40
0.00
45.39
3.41
558
1937
1.302033
CCACTGTGGGCAGACAGAC
60.302
63.158
19.23
0.00
45.39
3.51
559
1938
3.150949
CCACTGTGGGCAGACAGA
58.849
61.111
19.23
0.00
45.39
3.41
632
2018
1.469079
GGTTTTGTTTGACGTGCAGCT
60.469
47.619
0.00
0.00
0.00
4.24
731
2136
1.003718
GTTTACTGCTGCCCTCGGT
60.004
57.895
0.00
0.00
0.00
4.69
766
2204
5.432885
TGCCTCCTTAAAAGAAAGAAACG
57.567
39.130
0.00
0.00
0.00
3.60
774
2212
2.290323
GGTCTGCTGCCTCCTTAAAAGA
60.290
50.000
0.00
0.00
0.00
2.52
832
2275
2.235402
GGATACTTGTCTTCCGTGGGAA
59.765
50.000
0.00
0.00
39.66
3.97
867
2310
2.670148
CGTGGGGAAGAAGGGGAGG
61.670
68.421
0.00
0.00
0.00
4.30
868
2311
2.990479
CGTGGGGAAGAAGGGGAG
59.010
66.667
0.00
0.00
0.00
4.30
903
2357
0.037326
TCCCTTTGCTACTGCTCACG
60.037
55.000
0.00
0.00
40.48
4.35
904
2358
1.731720
CTCCCTTTGCTACTGCTCAC
58.268
55.000
0.00
0.00
40.48
3.51
905
2359
0.036010
GCTCCCTTTGCTACTGCTCA
60.036
55.000
0.00
0.00
40.48
4.26
906
2360
1.086634
CGCTCCCTTTGCTACTGCTC
61.087
60.000
0.00
0.00
40.48
4.26
907
2361
1.078848
CGCTCCCTTTGCTACTGCT
60.079
57.895
0.00
0.00
40.48
4.24
908
2362
1.079127
TCGCTCCCTTTGCTACTGC
60.079
57.895
0.00
0.00
40.20
4.40
909
2363
1.086634
GCTCGCTCCCTTTGCTACTG
61.087
60.000
0.00
0.00
0.00
2.74
910
2364
1.219393
GCTCGCTCCCTTTGCTACT
59.781
57.895
0.00
0.00
0.00
2.57
911
2365
1.086634
CAGCTCGCTCCCTTTGCTAC
61.087
60.000
0.00
0.00
32.29
3.58
912
2366
1.219124
CAGCTCGCTCCCTTTGCTA
59.781
57.895
0.00
0.00
32.29
3.49
913
2367
2.046507
CAGCTCGCTCCCTTTGCT
60.047
61.111
0.00
0.00
0.00
3.91
914
2368
3.808656
GCAGCTCGCTCCCTTTGC
61.809
66.667
1.48
0.00
37.77
3.68
928
2382
2.871099
CAAGAGCAGCAGCAGCAG
59.129
61.111
12.92
0.00
45.49
4.24
929
2383
3.362797
GCAAGAGCAGCAGCAGCA
61.363
61.111
12.92
0.00
45.49
4.41
933
2402
1.913451
CTCACAGCAAGAGCAGCAGC
61.913
60.000
0.00
0.00
45.49
5.25
935
2404
1.302271
CCTCACAGCAAGAGCAGCA
60.302
57.895
0.00
0.00
45.49
4.41
951
2428
1.052124
TCACTTCCACGGTTCCACCT
61.052
55.000
0.00
0.00
35.66
4.00
960
2437
1.337260
CCTCCTCACTTCACTTCCACG
60.337
57.143
0.00
0.00
0.00
4.94
961
2438
1.609320
GCCTCCTCACTTCACTTCCAC
60.609
57.143
0.00
0.00
0.00
4.02
962
2439
0.687354
GCCTCCTCACTTCACTTCCA
59.313
55.000
0.00
0.00
0.00
3.53
963
2440
0.390472
CGCCTCCTCACTTCACTTCC
60.390
60.000
0.00
0.00
0.00
3.46
964
2441
1.016653
GCGCCTCCTCACTTCACTTC
61.017
60.000
0.00
0.00
0.00
3.01
986
2463
1.358402
CTCATCTCTGACGCTCCCG
59.642
63.158
0.00
0.00
41.14
5.14
987
2464
1.067250
GCTCATCTCTGACGCTCCC
59.933
63.158
0.00
0.00
0.00
4.30
988
2465
1.299014
CGCTCATCTCTGACGCTCC
60.299
63.158
0.00
0.00
0.00
4.70
989
2466
0.865218
CACGCTCATCTCTGACGCTC
60.865
60.000
0.00
0.00
32.64
5.03
993
2470
0.528017
TGGTCACGCTCATCTCTGAC
59.472
55.000
0.00
0.00
33.61
3.51
994
2471
1.203287
CTTGGTCACGCTCATCTCTGA
59.797
52.381
0.00
0.00
0.00
3.27
995
2472
1.067283
ACTTGGTCACGCTCATCTCTG
60.067
52.381
0.00
0.00
0.00
3.35
1017
2497
0.389296
CCACCGTGACGCACTTGATA
60.389
55.000
0.00
0.00
31.34
2.15
1121
2601
2.245287
GGTAGGAGGAGAAGAGGAAGGA
59.755
54.545
0.00
0.00
0.00
3.36
1146
2626
2.104669
AGATGGGAACTACCTAGCCC
57.895
55.000
0.00
0.00
36.15
5.19
1148
2628
3.310193
AGGAAGATGGGAACTACCTAGC
58.690
50.000
0.00
0.00
38.98
3.42
1149
2629
3.898741
GGAGGAAGATGGGAACTACCTAG
59.101
52.174
0.00
0.00
38.98
3.02
1150
2630
3.536434
AGGAGGAAGATGGGAACTACCTA
59.464
47.826
0.00
0.00
38.98
3.08
1151
2631
2.319438
AGGAGGAAGATGGGAACTACCT
59.681
50.000
0.00
0.00
38.98
3.08
1152
2632
2.701423
GAGGAGGAAGATGGGAACTACC
59.299
54.545
0.00
0.00
38.08
3.18
1155
2635
2.758130
GAGAGGAGGAAGATGGGAACT
58.242
52.381
0.00
0.00
0.00
3.01
1162
2642
1.133606
GGAGGTCGAGAGGAGGAAGAT
60.134
57.143
0.00
0.00
0.00
2.40
1181
2661
4.496670
CCGAGTGAGCGGTAAAGG
57.503
61.111
0.00
0.00
46.07
3.11
1347
2828
2.158696
GGAAATGAGGAGGGATGGAGTG
60.159
54.545
0.00
0.00
0.00
3.51
1360
2841
3.340814
AGTAGCTGTGGTGGAAATGAG
57.659
47.619
0.00
0.00
0.00
2.90
1374
2855
4.404640
TGTGAACACCAGTAGTAGTAGCT
58.595
43.478
2.46
0.00
0.00
3.32
1381
2862
1.808891
GCGGTTGTGAACACCAGTAGT
60.809
52.381
2.46
0.00
0.00
2.73
1421
2924
1.280746
CGGAGCAAACACAGCACAG
59.719
57.895
0.00
0.00
0.00
3.66
1437
2940
1.376037
GTCCTCTTGCCCTGAACGG
60.376
63.158
0.00
0.00
0.00
4.44
1611
3123
4.142447
CCTCAAGCACAATCAAATCTGGAG
60.142
45.833
0.00
0.00
0.00
3.86
1634
3146
6.329496
TCAAAACATTCAGTTCAGGTGAAAC
58.671
36.000
0.00
0.00
40.26
2.78
1647
3159
9.558648
CGAATTATCATCAGTTCAAAACATTCA
57.441
29.630
0.00
0.00
0.00
2.57
1648
3160
9.013490
CCGAATTATCATCAGTTCAAAACATTC
57.987
33.333
0.00
0.00
0.00
2.67
1649
3161
8.522830
ACCGAATTATCATCAGTTCAAAACATT
58.477
29.630
0.00
0.00
0.00
2.71
1650
3162
8.055279
ACCGAATTATCATCAGTTCAAAACAT
57.945
30.769
0.00
0.00
0.00
2.71
1655
3167
6.758416
CAGAGACCGAATTATCATCAGTTCAA
59.242
38.462
0.00
0.00
0.00
2.69
1657
3169
5.694006
CCAGAGACCGAATTATCATCAGTTC
59.306
44.000
0.00
0.00
0.00
3.01
1719
3239
3.982576
ACAAGAACAATGGGAACGTTC
57.017
42.857
20.14
20.14
37.50
3.95
1737
3257
0.400213
CACCTAGCTTGGTCCCAACA
59.600
55.000
17.51
0.00
38.45
3.33
1759
3279
3.591835
CGCGTTGGGTGCAGGTTT
61.592
61.111
0.00
0.00
0.00
3.27
1780
3300
2.223144
TGCGGAAAGTTCATCGAAACAG
59.777
45.455
3.01
0.00
0.00
3.16
1805
3329
1.375908
GATGCAGAGCAACCCGTGA
60.376
57.895
0.00
0.00
43.62
4.35
1841
3365
1.265635
TCTGAACAATGGAAAACGCCG
59.734
47.619
0.00
0.00
0.00
6.46
1842
3366
3.191371
AGATCTGAACAATGGAAAACGCC
59.809
43.478
0.00
0.00
0.00
5.68
1843
3367
4.161333
CAGATCTGAACAATGGAAAACGC
58.839
43.478
18.34
0.00
0.00
4.84
1846
3370
3.820467
ACGCAGATCTGAACAATGGAAAA
59.180
39.130
27.04
0.00
0.00
2.29
1907
3433
0.956633
CCTGTGCAGTTGTGATTGCT
59.043
50.000
0.00
0.00
39.10
3.91
2259
3795
2.342279
CTCGGCGGTTGAAGGACA
59.658
61.111
7.21
0.00
0.00
4.02
2345
3881
1.630878
GTGAATGAGAAGAGGTGGGGT
59.369
52.381
0.00
0.00
0.00
4.95
2357
3894
2.499289
ACCAGTGGAGCTAGTGAATGAG
59.501
50.000
18.40
0.00
0.00
2.90
2367
3904
4.345257
CCATTATACAGTACCAGTGGAGCT
59.655
45.833
18.40
10.30
0.00
4.09
2374
3911
5.050490
GCTCACACCATTATACAGTACCAG
58.950
45.833
0.00
0.00
0.00
4.00
2402
3944
4.204799
TCATGGAGCAAATCTGGAGAATG
58.795
43.478
0.00
0.00
0.00
2.67
2428
3970
0.394565
AGGTGACCAGTGAGCAAGAC
59.605
55.000
3.63
0.00
0.00
3.01
2447
3989
7.901029
TGAATGTGCCAATTTTGAGGTAATAA
58.099
30.769
0.00
0.00
0.00
1.40
2448
3990
7.473735
TGAATGTGCCAATTTTGAGGTAATA
57.526
32.000
0.00
0.00
0.00
0.98
2449
3991
6.357579
TGAATGTGCCAATTTTGAGGTAAT
57.642
33.333
0.00
0.00
0.00
1.89
2488
4030
5.027293
TCTAAGCAGCAGCATTTCATAGA
57.973
39.130
3.17
0.00
45.49
1.98
2526
4083
1.262950
TGTTTGCATCGGTTCGAGTTG
59.737
47.619
0.00
0.00
39.91
3.16
2531
4088
0.453282
CAGCTGTTTGCATCGGTTCG
60.453
55.000
5.25
0.00
45.94
3.95
2532
4089
0.874390
TCAGCTGTTTGCATCGGTTC
59.126
50.000
14.67
0.00
45.94
3.62
2600
4161
1.564818
ACGACAGGATCAGGACTCCTA
59.435
52.381
0.00
0.00
41.29
2.94
2619
4180
3.057245
GCCTGTGGATTCAAAAGGAGAAC
60.057
47.826
0.88
0.00
33.20
3.01
2625
4186
3.318839
TCAAGTGCCTGTGGATTCAAAAG
59.681
43.478
0.00
0.00
0.00
2.27
2676
4237
3.302347
GAGTCAGTCCGGGGTGCTG
62.302
68.421
0.00
5.77
0.00
4.41
2781
4342
4.379394
CCAAAACACGCAACATATAGTGCT
60.379
41.667
7.87
0.00
38.08
4.40
2782
4343
3.851403
CCAAAACACGCAACATATAGTGC
59.149
43.478
0.63
0.63
38.08
4.40
2783
4344
5.041951
ACCAAAACACGCAACATATAGTG
57.958
39.130
0.00
0.00
40.17
2.74
2925
4499
4.116961
CGAATCCCTACGAAATGCTAACA
58.883
43.478
0.00
0.00
0.00
2.41
2934
4508
1.097232
TCGAAGCGAATCCCTACGAA
58.903
50.000
0.00
0.00
31.06
3.85
2959
4533
0.896923
TCAATCTGCCACCAATTGCC
59.103
50.000
0.00
0.00
31.84
4.52
3004
4579
2.355716
CCTCCCTTCTTGCCGTTTGATA
60.356
50.000
0.00
0.00
0.00
2.15
3012
4587
1.584717
ATTCCCCCTCCCTTCTTGCC
61.585
60.000
0.00
0.00
0.00
4.52
3079
4655
2.030007
CACCAATGGCTACAAACACAGG
60.030
50.000
0.00
0.00
0.00
4.00
3113
4689
1.877680
GCCCCCTTGTTCAACATTTGC
60.878
52.381
0.00
0.00
0.00
3.68
3115
4691
1.799933
TGCCCCCTTGTTCAACATTT
58.200
45.000
0.00
0.00
0.00
2.32
3125
4891
1.180029
CTTTGACAGATGCCCCCTTG
58.820
55.000
0.00
0.00
0.00
3.61
3137
4903
2.355444
TGTGACGACGACTACTTTGACA
59.645
45.455
0.00
0.00
0.00
3.58
3138
4904
2.971915
CTGTGACGACGACTACTTTGAC
59.028
50.000
0.00
0.00
0.00
3.18
3139
4905
2.615447
ACTGTGACGACGACTACTTTGA
59.385
45.455
0.00
0.00
0.00
2.69
3140
4906
2.971915
GACTGTGACGACGACTACTTTG
59.028
50.000
0.00
0.00
0.00
2.77
3142
4908
2.216046
TGACTGTGACGACGACTACTT
58.784
47.619
0.00
0.00
0.00
2.24
3162
4929
1.422781
TCCCGGTCGACCATATACTCT
59.577
52.381
32.80
0.00
35.14
3.24
3163
4930
1.538950
GTCCCGGTCGACCATATACTC
59.461
57.143
32.80
12.77
35.14
2.59
3206
4978
3.059800
GTCGACCTGTTTTTCTGCTACAC
60.060
47.826
3.51
0.00
0.00
2.90
3221
4993
2.267961
GGCCAATTCCGTCGACCT
59.732
61.111
10.58
0.00
0.00
3.85
3230
5002
0.872388
AACAAGTCGACGGCCAATTC
59.128
50.000
10.46
0.00
0.00
2.17
3234
5006
0.745128
AAACAACAAGTCGACGGCCA
60.745
50.000
10.46
0.00
0.00
5.36
3241
5013
2.143925
GGAGGGAGAAACAACAAGTCG
58.856
52.381
0.00
0.00
0.00
4.18
3277
5049
5.886960
AGGTATTTGATGAGCACTTCAAC
57.113
39.130
11.14
2.78
39.77
3.18
3278
5050
5.335897
GCAAGGTATTTGATGAGCACTTCAA
60.336
40.000
8.12
8.12
39.21
2.69
3285
5057
2.099756
GGTGGCAAGGTATTTGATGAGC
59.900
50.000
0.00
0.00
39.21
4.26
3289
5061
2.311542
TCCTGGTGGCAAGGTATTTGAT
59.688
45.455
5.18
0.00
39.21
2.57
3302
5074
1.324740
CCATTGTGCCATCCTGGTGG
61.325
60.000
9.99
9.99
40.46
4.61
3340
5124
5.007034
TCGCTTCCTCCAATTTTCATGTTA
58.993
37.500
0.00
0.00
0.00
2.41
3411
5195
0.250295
CTGCCTTGTCGGTTTCAGGA
60.250
55.000
0.00
0.00
34.25
3.86
3418
5202
3.575351
GAGACGCTGCCTTGTCGGT
62.575
63.158
0.00
0.00
40.05
4.69
3424
5208
0.179018
AACCTTTGAGACGCTGCCTT
60.179
50.000
0.00
0.00
0.00
4.35
3429
5213
1.949465
ACGAAAACCTTTGAGACGCT
58.051
45.000
0.00
0.00
0.00
5.07
3431
5215
2.798283
TGCTACGAAAACCTTTGAGACG
59.202
45.455
0.00
0.00
0.00
4.18
3433
5217
2.806244
GCTGCTACGAAAACCTTTGAGA
59.194
45.455
0.00
0.00
0.00
3.27
3437
5221
2.228822
CCATGCTGCTACGAAAACCTTT
59.771
45.455
0.00
0.00
0.00
3.11
3438
5222
1.812571
CCATGCTGCTACGAAAACCTT
59.187
47.619
0.00
0.00
0.00
3.50
3439
5223
1.003118
TCCATGCTGCTACGAAAACCT
59.997
47.619
0.00
0.00
0.00
3.50
3440
5224
1.448985
TCCATGCTGCTACGAAAACC
58.551
50.000
0.00
0.00
0.00
3.27
3441
5225
2.677836
TGATCCATGCTGCTACGAAAAC
59.322
45.455
0.00
0.00
0.00
2.43
3442
5226
2.984562
TGATCCATGCTGCTACGAAAA
58.015
42.857
0.00
0.00
0.00
2.29
3443
5227
2.677836
GTTGATCCATGCTGCTACGAAA
59.322
45.455
0.00
0.00
0.00
3.46
3444
5228
2.279741
GTTGATCCATGCTGCTACGAA
58.720
47.619
0.00
0.00
0.00
3.85
3466
5250
5.220854
GGAATGCACATAACAGTATGGACAC
60.221
44.000
0.00
0.00
43.62
3.67
3491
5275
4.443394
CAGAATTTGCTTGAGCTCAACAAC
59.557
41.667
28.52
21.59
42.66
3.32
3505
5289
2.555757
ACTCTTGGAGTGCAGAATTTGC
59.444
45.455
0.00
5.87
41.76
3.68
3506
5290
4.518211
AGAACTCTTGGAGTGCAGAATTTG
59.482
41.667
8.20
0.00
42.59
2.32
3507
5291
4.518211
CAGAACTCTTGGAGTGCAGAATTT
59.482
41.667
8.20
0.00
42.59
1.82
3510
5294
2.435805
ACAGAACTCTTGGAGTGCAGAA
59.564
45.455
8.20
0.00
42.59
3.02
3511
5295
2.042464
ACAGAACTCTTGGAGTGCAGA
58.958
47.619
8.20
0.00
42.59
4.26
3513
5297
2.245159
CACAGAACTCTTGGAGTGCA
57.755
50.000
8.20
0.00
42.59
4.57
3514
5298
0.871057
GCACAGAACTCTTGGAGTGC
59.129
55.000
0.00
0.00
42.59
4.40
3515
5299
2.141517
CTGCACAGAACTCTTGGAGTG
58.858
52.381
0.74
0.00
42.59
3.51
3516
5300
1.765314
ACTGCACAGAACTCTTGGAGT
59.235
47.619
4.31
8.92
45.64
3.85
3517
5301
2.141517
CACTGCACAGAACTCTTGGAG
58.858
52.381
4.31
8.04
35.03
3.86
3518
5302
1.811558
GCACTGCACAGAACTCTTGGA
60.812
52.381
4.31
0.00
0.00
3.53
3519
5303
0.590195
GCACTGCACAGAACTCTTGG
59.410
55.000
4.31
0.00
0.00
3.61
3520
5304
1.302366
TGCACTGCACAGAACTCTTG
58.698
50.000
4.31
0.00
31.71
3.02
3521
5305
3.786656
TGCACTGCACAGAACTCTT
57.213
47.368
4.31
0.00
31.71
2.85
3531
5315
7.003402
TCAAGTATATATATGGTGCACTGCA
57.997
36.000
17.98
7.60
35.60
4.41
3532
5316
7.765819
TGATCAAGTATATATATGGTGCACTGC
59.234
37.037
17.98
0.83
0.00
4.40
3533
5317
9.657419
TTGATCAAGTATATATATGGTGCACTG
57.343
33.333
17.98
2.02
0.00
3.66
3534
5318
9.658799
GTTGATCAAGTATATATATGGTGCACT
57.341
33.333
17.98
0.00
0.00
4.40
3535
5319
8.595533
CGTTGATCAAGTATATATATGGTGCAC
58.404
37.037
8.80
8.80
0.00
4.57
3536
5320
8.527810
TCGTTGATCAAGTATATATATGGTGCA
58.472
33.333
8.80
0.00
0.00
4.57
3537
5321
8.926715
TCGTTGATCAAGTATATATATGGTGC
57.073
34.615
8.80
0.00
0.00
5.01
3538
5322
9.521503
CCTCGTTGATCAAGTATATATATGGTG
57.478
37.037
8.80
1.44
0.00
4.17
3539
5323
9.475620
TCCTCGTTGATCAAGTATATATATGGT
57.524
33.333
8.80
0.00
0.00
3.55
3544
5328
9.249053
AGACATCCTCGTTGATCAAGTATATAT
57.751
33.333
8.80
0.00
0.00
0.86
3545
5329
8.637196
AGACATCCTCGTTGATCAAGTATATA
57.363
34.615
8.80
0.00
0.00
0.86
3571
5355
2.586792
GAGGGGCGTCATTGCTCT
59.413
61.111
0.00
0.00
35.04
4.09
3572
5356
2.514824
GGAGGGGCGTCATTGCTC
60.515
66.667
0.00
0.00
34.52
4.26
3598
5540
4.044426
GCAACTTGCGAACAGAAATCTTT
58.956
39.130
0.00
0.00
31.71
2.52
3635
5577
2.860735
GTGACCTCAATCTACGTCATGC
59.139
50.000
0.00
0.00
37.55
4.06
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.