Multiple sequence alignment - TraesCS1B01G346500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G346500 chr1B 100.000 6704 0 0 1 6704 575716616 575723319 0.000000e+00 12381.0
1 TraesCS1B01G346500 chr1B 88.194 144 14 3 5007 5148 575721515 575721657 1.160000e-37 169.0
2 TraesCS1B01G346500 chr1B 88.194 144 14 3 4900 5042 575721622 575721763 1.160000e-37 169.0
3 TraesCS1B01G346500 chr1D 95.231 4676 124 42 741 5364 426161381 426166009 0.000000e+00 7308.0
4 TraesCS1B01G346500 chr1D 89.691 1261 91 25 5462 6704 426166012 426167251 0.000000e+00 1572.0
5 TraesCS1B01G346500 chr1D 88.710 248 27 1 92 339 425684779 425685025 1.090000e-77 302.0
6 TraesCS1B01G346500 chr1D 89.571 163 13 4 2481 2643 426163272 426163430 3.170000e-48 204.0
7 TraesCS1B01G346500 chr1D 91.667 144 10 2 5007 5148 426165545 426165688 1.470000e-46 198.0
8 TraesCS1B01G346500 chr1D 89.583 144 14 1 4900 5042 426165652 426165795 1.490000e-41 182.0
9 TraesCS1B01G346500 chr1D 91.111 45 1 1 3598 3639 426164167 426164211 2.610000e-04 58.4
10 TraesCS1B01G346500 chr1D 88.889 45 4 1 622 666 426160793 426160836 3.000000e-03 54.7
11 TraesCS1B01G346500 chr1D 100.000 28 0 0 5368 5395 441070264 441070291 1.200000e-02 52.8
12 TraesCS1B01G346500 chr1A 96.232 2548 68 15 2661 5199 521271150 521273678 0.000000e+00 4148.0
13 TraesCS1B01G346500 chr1A 86.617 1076 62 23 635 1691 521269393 521270405 0.000000e+00 1114.0
14 TraesCS1B01G346500 chr1A 90.980 765 38 13 1721 2472 521270404 521271150 0.000000e+00 1002.0
15 TraesCS1B01G346500 chr1A 90.207 725 33 16 5462 6170 521273884 521274586 0.000000e+00 911.0
16 TraesCS1B01G346500 chr1A 89.427 454 46 2 3 455 521268824 521269276 7.540000e-159 571.0
17 TraesCS1B01G346500 chr1A 93.443 183 10 2 5184 5364 521273699 521273881 3.080000e-68 270.0
18 TraesCS1B01G346500 chr1A 91.667 144 10 2 5007 5148 521273380 521273523 1.470000e-46 198.0
19 TraesCS1B01G346500 chr1A 90.972 144 12 1 4900 5042 521273487 521273630 6.860000e-45 193.0
20 TraesCS1B01G346500 chr1A 89.362 141 11 4 2503 2643 521271150 521271286 2.490000e-39 174.0
21 TraesCS1B01G346500 chr1A 93.162 117 8 0 501 617 521269286 521269402 8.940000e-39 172.0
22 TraesCS1B01G346500 chr1A 86.047 129 14 3 6577 6704 521275380 521275505 1.170000e-27 135.0
23 TraesCS1B01G346500 chr1A 95.349 43 1 1 3598 3639 521272008 521272050 4.340000e-07 67.6
24 TraesCS1B01G346500 chr1A 96.875 32 0 1 5364 5395 545330971 545330941 1.200000e-02 52.8
25 TraesCS1B01G346500 chr6D 86.970 637 63 16 3612 4232 458995281 458995913 0.000000e+00 699.0
26 TraesCS1B01G346500 chr6D 87.633 566 53 9 1865 2425 458993964 458994517 5.670000e-180 641.0
27 TraesCS1B01G346500 chr6D 84.427 655 73 13 4273 4908 458995904 458996548 9.550000e-173 617.0
28 TraesCS1B01G346500 chr6D 79.136 671 92 19 2795 3460 458994519 458995146 2.890000e-113 420.0
29 TraesCS1B01G346500 chr6D 81.437 334 25 16 5433 5748 458996678 458996992 8.690000e-59 239.0
30 TraesCS1B01G346500 chr6D 83.951 243 28 4 1312 1553 458993036 458993268 8.750000e-54 222.0
31 TraesCS1B01G346500 chr6D 95.122 41 2 0 1640 1680 458993324 458993364 1.560000e-06 65.8
32 TraesCS1B01G346500 chr7B 80.864 324 46 14 3 323 52506935 52507245 2.420000e-59 241.0
33 TraesCS1B01G346500 chr4D 79.109 359 61 10 1 350 467189881 467189528 1.120000e-57 235.0
34 TraesCS1B01G346500 chr2B 89.831 118 12 0 467 584 76868098 76868215 1.160000e-32 152.0
35 TraesCS1B01G346500 chr2B 96.970 33 0 1 5363 5395 224586441 224586472 3.000000e-03 54.7
36 TraesCS1B01G346500 chr2D 96.970 33 0 1 5363 5395 175825023 175825054 3.000000e-03 54.7
37 TraesCS1B01G346500 chr5D 96.875 32 0 1 5364 5395 173751499 173751529 1.200000e-02 52.8
38 TraesCS1B01G346500 chr5B 87.500 48 2 4 5350 5395 13704390 13704435 1.200000e-02 52.8
39 TraesCS1B01G346500 chr5B 96.875 32 0 1 5364 5395 184784466 184784436 1.200000e-02 52.8
40 TraesCS1B01G346500 chr5A 96.875 32 0 1 5364 5395 195630111 195630141 1.200000e-02 52.8
41 TraesCS1B01G346500 chr3B 94.286 35 1 1 5362 5395 750141414 750141448 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G346500 chr1B 575716616 575723319 6703 False 4239.666667 12381 92.129333 1 6704 3 chr1B.!!$F1 6703
1 TraesCS1B01G346500 chr1D 426160793 426167251 6458 False 1368.157143 7308 90.820429 622 6704 7 chr1D.!!$F3 6082
2 TraesCS1B01G346500 chr1A 521268824 521275505 6681 False 746.300000 4148 91.122083 3 6704 12 chr1A.!!$F1 6701
3 TraesCS1B01G346500 chr6D 458993036 458996992 3956 False 414.828571 699 85.525143 1312 5748 7 chr6D.!!$F1 4436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
395 397 0.389166 CAGTGGAGTCTCTGCGAACC 60.389 60.000 0.00 0.0 0.00 3.62 F
499 501 0.814457 CTCTCAGGTTGTCTCGGAGG 59.186 60.000 4.96 0.0 0.00 4.30 F
944 1450 1.679032 CCACGGAACAATCCCCTTCTC 60.679 57.143 0.00 0.0 43.37 2.87 F
1889 2832 1.024271 GCAGCCTTGTTGTCTGTCAA 58.976 50.000 0.00 0.0 0.00 3.18 F
2719 3679 0.323302 TTTGTGCAGCGGATGGAGTA 59.677 50.000 0.00 0.0 0.00 2.59 F
3498 4461 1.353394 GGGCTAGGGGCTTGGTACAT 61.353 60.000 0.00 0.0 41.46 2.29 F
5149 6262 0.929244 AGGATGCCTGCCATTTAGGT 59.071 50.000 0.00 0.0 40.61 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 2046 0.108138 AATTCTGAAGCGTCCTCCGG 60.108 55.000 0.00 0.0 36.94 5.14 R
1553 2074 1.145162 GGCGCGGCATTGGTTAATTG 61.145 55.000 29.32 0.0 0.00 2.32 R
2268 3226 1.272490 TGTGAAACAGAGGGAGTAGCG 59.728 52.381 0.00 0.0 45.67 4.26 R
3233 4196 1.271379 CTGCACATTGCCACTCACATT 59.729 47.619 0.00 0.0 44.23 2.71 R
4648 5754 0.464452 GGATACAGGAGACGGTTGGG 59.536 60.000 0.00 0.0 40.14 4.12 R
5420 6571 0.178873 ACCAAAGGTAGCTCCCCAGA 60.179 55.000 0.00 0.0 32.11 3.86 R
6439 8147 1.143073 GGATTATGAAAGGGAGGGCGT 59.857 52.381 0.00 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.725019 TGAACAAGTTCATAGAGATACAATGTT 57.275 29.630 11.34 0.00 43.90 2.71
52 53 5.918608 TGTTGATCTGGAGTATTAAGGAGC 58.081 41.667 0.00 0.00 0.00 4.70
60 61 4.966168 TGGAGTATTAAGGAGCCACACATA 59.034 41.667 0.00 0.00 0.00 2.29
62 63 4.962155 AGTATTAAGGAGCCACACATAGC 58.038 43.478 0.00 0.00 0.00 2.97
64 65 1.191535 TAAGGAGCCACACATAGCGT 58.808 50.000 0.00 0.00 0.00 5.07
75 76 4.876107 CCACACATAGCGTCCTAAAGAAAT 59.124 41.667 0.00 0.00 0.00 2.17
97 98 5.854010 TGCCTAGAGTATGTTTAGTGAGG 57.146 43.478 0.00 0.00 0.00 3.86
104 105 7.045126 AGAGTATGTTTAGTGAGGCTATGTC 57.955 40.000 0.00 0.00 0.00 3.06
105 106 6.836527 AGAGTATGTTTAGTGAGGCTATGTCT 59.163 38.462 0.00 0.00 0.00 3.41
108 109 6.552445 ATGTTTAGTGAGGCTATGTCTCTT 57.448 37.500 0.89 0.00 35.05 2.85
116 117 6.266558 AGTGAGGCTATGTCTCTTAGTATTGG 59.733 42.308 0.89 0.00 35.05 3.16
119 120 7.125811 TGAGGCTATGTCTCTTAGTATTGGTTT 59.874 37.037 0.89 0.00 35.05 3.27
124 126 9.959749 CTATGTCTCTTAGTATTGGTTTCTCTC 57.040 37.037 0.00 0.00 0.00 3.20
229 231 6.178507 CGTATTTCTGTGAATGTCGTTGATC 58.821 40.000 0.00 0.00 0.00 2.92
239 241 3.186702 TGTCGTTGATCACACCTTGAA 57.813 42.857 0.00 0.00 37.92 2.69
241 243 3.942115 TGTCGTTGATCACACCTTGAAAA 59.058 39.130 0.00 0.00 37.92 2.29
242 244 4.396478 TGTCGTTGATCACACCTTGAAAAA 59.604 37.500 0.00 0.00 37.92 1.94
243 245 5.067153 TGTCGTTGATCACACCTTGAAAAAT 59.933 36.000 0.00 0.00 37.92 1.82
244 246 5.625311 GTCGTTGATCACACCTTGAAAAATC 59.375 40.000 0.00 0.00 37.92 2.17
246 248 4.764679 TGATCACACCTTGAAAAATCCG 57.235 40.909 0.00 0.00 37.92 4.18
248 250 4.824537 TGATCACACCTTGAAAAATCCGAA 59.175 37.500 0.00 0.00 37.92 4.30
249 251 4.829064 TCACACCTTGAAAAATCCGAAG 57.171 40.909 0.00 0.00 0.00 3.79
250 252 3.004315 TCACACCTTGAAAAATCCGAAGC 59.996 43.478 0.00 0.00 0.00 3.86
251 253 3.004734 CACACCTTGAAAAATCCGAAGCT 59.995 43.478 0.00 0.00 0.00 3.74
252 254 4.215399 CACACCTTGAAAAATCCGAAGCTA 59.785 41.667 0.00 0.00 0.00 3.32
253 255 5.010282 ACACCTTGAAAAATCCGAAGCTAT 58.990 37.500 0.00 0.00 0.00 2.97
260 262 2.988010 AATCCGAAGCTATCTGCACA 57.012 45.000 0.00 0.00 45.94 4.57
264 266 2.432146 TCCGAAGCTATCTGCACATCTT 59.568 45.455 0.00 0.00 45.94 2.40
294 296 4.462508 AAATCGAGATCAAGTGAGAGCA 57.537 40.909 0.00 0.00 0.00 4.26
311 313 2.665185 ACTTCGCGACAGGCCAAC 60.665 61.111 9.15 0.00 38.94 3.77
324 326 2.267045 GCCAACGCCTCCAAAGATT 58.733 52.632 0.00 0.00 0.00 2.40
341 343 1.486726 GATTCTGGGTCGGTCATTCCT 59.513 52.381 0.00 0.00 0.00 3.36
353 355 5.007724 GTCGGTCATTCCTGGACATTTTATC 59.992 44.000 0.00 0.00 37.00 1.75
377 379 2.693591 CGAGGAACCTAGATAGTTGCCA 59.306 50.000 0.00 0.00 36.32 4.92
386 388 2.826488 AGATAGTTGCCAGTGGAGTCT 58.174 47.619 15.20 9.35 0.00 3.24
395 397 0.389166 CAGTGGAGTCTCTGCGAACC 60.389 60.000 0.00 0.00 0.00 3.62
396 398 0.827925 AGTGGAGTCTCTGCGAACCA 60.828 55.000 0.00 0.00 0.00 3.67
398 400 1.112916 TGGAGTCTCTGCGAACCACA 61.113 55.000 0.00 0.00 0.00 4.17
413 415 3.434940 ACCACATTGTAAGAACCCTCC 57.565 47.619 0.00 0.00 0.00 4.30
417 419 2.268298 CATTGTAAGAACCCTCCGTCG 58.732 52.381 0.00 0.00 0.00 5.12
444 446 3.661745 GACACGTCACTGTCCACTT 57.338 52.632 0.00 0.00 35.44 3.16
455 457 3.803778 CACTGTCCACTTGAATTTTTGCC 59.196 43.478 0.00 0.00 0.00 4.52
456 458 3.450457 ACTGTCCACTTGAATTTTTGCCA 59.550 39.130 0.00 0.00 0.00 4.92
457 459 3.791245 TGTCCACTTGAATTTTTGCCAC 58.209 40.909 0.00 0.00 0.00 5.01
458 460 3.450457 TGTCCACTTGAATTTTTGCCACT 59.550 39.130 0.00 0.00 0.00 4.00
460 462 3.960102 TCCACTTGAATTTTTGCCACTCT 59.040 39.130 0.00 0.00 0.00 3.24
461 463 4.405358 TCCACTTGAATTTTTGCCACTCTT 59.595 37.500 0.00 0.00 0.00 2.85
462 464 5.104982 TCCACTTGAATTTTTGCCACTCTTT 60.105 36.000 0.00 0.00 0.00 2.52
463 465 5.585844 CCACTTGAATTTTTGCCACTCTTTT 59.414 36.000 0.00 0.00 0.00 2.27
464 466 6.457257 CCACTTGAATTTTTGCCACTCTTTTG 60.457 38.462 0.00 0.00 0.00 2.44
465 467 5.585844 ACTTGAATTTTTGCCACTCTTTTGG 59.414 36.000 0.00 0.00 39.98 3.28
471 473 3.737172 CCACTCTTTTGGCCGGCG 61.737 66.667 22.54 6.07 0.00 6.46
472 474 3.737172 CACTCTTTTGGCCGGCGG 61.737 66.667 24.35 24.35 0.00 6.13
474 476 4.715523 CTCTTTTGGCCGGCGGGA 62.716 66.667 29.48 14.07 34.06 5.14
475 477 3.995506 CTCTTTTGGCCGGCGGGAT 62.996 63.158 29.48 0.00 34.06 3.85
476 478 3.518068 CTTTTGGCCGGCGGGATC 61.518 66.667 29.48 11.13 34.06 3.36
482 484 4.688966 GCCGGCGGGATCCATCTC 62.689 72.222 29.48 2.95 34.06 2.75
483 485 2.919856 CCGGCGGGATCCATCTCT 60.920 66.667 20.56 0.00 34.06 3.10
484 486 2.653702 CGGCGGGATCCATCTCTC 59.346 66.667 15.23 0.00 0.00 3.20
485 487 2.203082 CGGCGGGATCCATCTCTCA 61.203 63.158 15.23 0.00 0.00 3.27
486 488 1.670590 GGCGGGATCCATCTCTCAG 59.329 63.158 15.23 0.00 0.00 3.35
487 489 1.670590 GCGGGATCCATCTCTCAGG 59.329 63.158 15.23 0.00 0.00 3.86
488 490 1.118356 GCGGGATCCATCTCTCAGGT 61.118 60.000 15.23 0.00 0.00 4.00
489 491 1.418334 CGGGATCCATCTCTCAGGTT 58.582 55.000 15.23 0.00 0.00 3.50
490 492 1.069823 CGGGATCCATCTCTCAGGTTG 59.930 57.143 15.23 0.00 0.00 3.77
491 493 2.122768 GGGATCCATCTCTCAGGTTGT 58.877 52.381 15.23 0.00 0.00 3.32
492 494 2.103941 GGGATCCATCTCTCAGGTTGTC 59.896 54.545 15.23 0.00 0.00 3.18
493 495 3.037549 GGATCCATCTCTCAGGTTGTCT 58.962 50.000 6.95 0.00 0.00 3.41
494 496 3.069443 GGATCCATCTCTCAGGTTGTCTC 59.931 52.174 6.95 0.00 0.00 3.36
495 497 2.095461 TCCATCTCTCAGGTTGTCTCG 58.905 52.381 0.00 0.00 0.00 4.04
496 498 1.135915 CCATCTCTCAGGTTGTCTCGG 59.864 57.143 0.00 0.00 0.00 4.63
497 499 2.095461 CATCTCTCAGGTTGTCTCGGA 58.905 52.381 0.00 0.00 0.00 4.55
498 500 1.827681 TCTCTCAGGTTGTCTCGGAG 58.172 55.000 0.00 0.00 0.00 4.63
499 501 0.814457 CTCTCAGGTTGTCTCGGAGG 59.186 60.000 4.96 0.00 0.00 4.30
514 516 1.963338 GAGGTGTGTGAGCAGCCAC 60.963 63.158 6.98 6.98 37.57 5.01
536 538 4.398988 ACATGTTGTATCATCGGTTTGCAT 59.601 37.500 0.00 0.00 0.00 3.96
547 549 2.076100 CGGTTTGCATGTCTGAAGCTA 58.924 47.619 0.00 0.00 0.00 3.32
585 587 8.494433 TCTGGACAAATAGATTAGTGGCTAAAT 58.506 33.333 0.00 0.00 29.35 1.40
586 588 9.125026 CTGGACAAATAGATTAGTGGCTAAATT 57.875 33.333 0.00 0.00 29.35 1.82
587 589 9.474313 TGGACAAATAGATTAGTGGCTAAATTT 57.526 29.630 0.00 0.00 29.35 1.82
614 616 9.627123 TTTTAGTTTTGAGATCCAGAAGAAAGA 57.373 29.630 0.00 0.00 0.00 2.52
615 617 8.608844 TTAGTTTTGAGATCCAGAAGAAAGAC 57.391 34.615 0.00 0.00 0.00 3.01
616 618 6.595682 AGTTTTGAGATCCAGAAGAAAGACA 58.404 36.000 0.00 0.00 0.00 3.41
617 619 6.484977 AGTTTTGAGATCCAGAAGAAAGACAC 59.515 38.462 0.00 0.00 0.00 3.67
618 620 5.815233 TTGAGATCCAGAAGAAAGACACT 57.185 39.130 0.00 0.00 0.00 3.55
619 621 5.815233 TGAGATCCAGAAGAAAGACACTT 57.185 39.130 0.00 0.00 0.00 3.16
620 622 6.179906 TGAGATCCAGAAGAAAGACACTTT 57.820 37.500 0.00 0.00 0.00 2.66
621 623 6.595682 TGAGATCCAGAAGAAAGACACTTTT 58.404 36.000 0.00 0.00 0.00 2.27
622 624 7.056635 TGAGATCCAGAAGAAAGACACTTTTT 58.943 34.615 0.00 0.00 0.00 1.94
681 1169 7.172019 CCATTTTGCAGGCTATATCAATTTTCC 59.828 37.037 0.00 0.00 0.00 3.13
686 1174 7.850193 TGCAGGCTATATCAATTTTCCTTTTT 58.150 30.769 0.00 0.00 0.00 1.94
733 1221 8.107399 TCAAAATGGATCTAGCAATCATCATC 57.893 34.615 0.00 0.00 0.00 2.92
736 1224 7.867305 AATGGATCTAGCAATCATCATCATC 57.133 36.000 0.00 0.00 0.00 2.92
738 1226 6.958767 TGGATCTAGCAATCATCATCATCAT 58.041 36.000 0.00 0.00 0.00 2.45
889 1382 2.053627 GTTCGTCTTTGGCATTTGCTG 58.946 47.619 2.12 0.00 41.70 4.41
944 1450 1.679032 CCACGGAACAATCCCCTTCTC 60.679 57.143 0.00 0.00 43.37 2.87
1433 1954 3.971245 TGACCTTGCCTTGTTTGTTTT 57.029 38.095 0.00 0.00 0.00 2.43
1553 2074 3.251571 ACGCTTCAGAATTCGAGGTAAC 58.748 45.455 10.77 0.00 0.00 2.50
1631 2155 4.679905 CGAGTAATTTCGCTAGGGGAGTTT 60.680 45.833 6.99 0.00 33.39 2.66
1632 2156 5.450965 CGAGTAATTTCGCTAGGGGAGTTTA 60.451 44.000 6.99 0.00 33.39 2.01
1633 2157 5.915175 AGTAATTTCGCTAGGGGAGTTTAG 58.085 41.667 6.99 0.00 0.00 1.85
1637 2161 5.743636 TTTCGCTAGGGGAGTTTAGTTTA 57.256 39.130 6.99 0.00 0.00 2.01
1683 2211 7.695480 TGGCAGCTCTGTTTATTGTAATAAA 57.305 32.000 5.85 5.85 38.24 1.40
1800 2328 5.724328 TGTTCTGTCACAAGGTCTATGATC 58.276 41.667 0.00 0.00 0.00 2.92
1889 2832 1.024271 GCAGCCTTGTTGTCTGTCAA 58.976 50.000 0.00 0.00 0.00 3.18
1890 2833 1.405105 GCAGCCTTGTTGTCTGTCAAA 59.595 47.619 0.00 0.00 37.81 2.69
1891 2834 2.796032 GCAGCCTTGTTGTCTGTCAAAC 60.796 50.000 0.00 0.00 37.81 2.93
1892 2835 2.684881 CAGCCTTGTTGTCTGTCAAACT 59.315 45.455 0.00 0.00 37.81 2.66
1893 2836 2.945668 AGCCTTGTTGTCTGTCAAACTC 59.054 45.455 0.00 0.00 37.81 3.01
2118 3072 7.985184 TCTACTCTCTTGCTGTTTGTTTTCTAA 59.015 33.333 0.00 0.00 0.00 2.10
2125 3079 4.578928 TGCTGTTTGTTTTCTAACTCCTCC 59.421 41.667 0.00 0.00 36.71 4.30
2200 3154 7.488150 TGAACAGTGATCTGACGAACATTATAC 59.512 37.037 0.00 0.00 43.76 1.47
2284 3242 1.192146 TGCCGCTACTCCCTCTGTTT 61.192 55.000 0.00 0.00 0.00 2.83
2330 3289 9.774742 GCTTACACATTTTCTTCCTAAATACAG 57.225 33.333 0.00 0.00 0.00 2.74
2334 3293 8.932791 ACACATTTTCTTCCTAAATACAGTACG 58.067 33.333 0.00 0.00 0.00 3.67
2614 3574 7.618019 ATTATTCCTTGAGCTCCAGTATACA 57.382 36.000 12.15 0.00 0.00 2.29
2673 3633 1.380785 ATGCAGCCTTGGTGGGATG 60.381 57.895 0.00 0.00 44.66 3.51
2690 3650 6.365520 GTGGGATGGGACTGTAAAATCTTAT 58.634 40.000 0.00 0.00 0.00 1.73
2719 3679 0.323302 TTTGTGCAGCGGATGGAGTA 59.677 50.000 0.00 0.00 0.00 2.59
2820 3780 9.379791 ACTTAATACTAGTCCTGTACATTTTGC 57.620 33.333 0.00 0.00 0.00 3.68
3422 4385 9.347240 GATTCCTATCTCTTCATTTGATTGGAA 57.653 33.333 15.95 15.95 46.97 3.53
3423 4386 8.511604 TTCCTATCTCTTCATTTGATTGGAAC 57.488 34.615 11.79 0.00 42.51 3.62
3498 4461 1.353394 GGGCTAGGGGCTTGGTACAT 61.353 60.000 0.00 0.00 41.46 2.29
3931 5006 8.413899 TGCAAATGGTAAGTTGTTTTTAACTC 57.586 30.769 0.00 0.00 39.86 3.01
4087 5163 6.204108 CCAAGATGGTAAACATTATCGGGTAC 59.796 42.308 0.00 0.00 40.72 3.34
4445 5551 5.616204 GCCTTCCGTTTTGTTACTGTATGAC 60.616 44.000 0.00 0.00 0.00 3.06
4598 5704 4.775253 AGTCAAACCCTGGAAACTTGAAAA 59.225 37.500 0.00 0.00 0.00 2.29
4648 5754 6.861065 TTCCATTTCTTGAGTGTAAGTGTC 57.139 37.500 0.00 0.00 0.00 3.67
4756 5867 2.171448 AGTCTGTGACCTCAAAGTGCTT 59.829 45.455 0.00 0.00 32.98 3.91
4767 5878 7.934665 TGACCTCAAAGTGCTTAAGTGTTAATA 59.065 33.333 4.02 0.00 0.00 0.98
4772 5883 8.026607 TCAAAGTGCTTAAGTGTTAATAATGCC 58.973 33.333 4.02 0.00 0.00 4.40
4868 5979 4.265904 TGATGTTGCTAAAGAGTTCCGA 57.734 40.909 0.00 0.00 0.00 4.55
4919 6030 8.574251 AAGCACATGGTTACATTCTATTACAA 57.426 30.769 0.00 0.00 34.35 2.41
4999 6110 4.081752 TCTCTTTGTGTGGCATTTGTTGTT 60.082 37.500 0.00 0.00 0.00 2.83
5024 6135 4.256110 CTGTCATGGTTGCATTCTACTGA 58.744 43.478 0.00 0.00 0.00 3.41
5035 6147 4.225942 TGCATTCTACTGAAGGATCCTGTT 59.774 41.667 17.02 0.00 36.20 3.16
5108 6220 2.037901 TGTGTGGCATTTGTTGTGGAT 58.962 42.857 0.00 0.00 0.00 3.41
5118 6231 5.334260 GCATTTGTTGTGGATTTCATGGTTG 60.334 40.000 0.00 0.00 0.00 3.77
5149 6262 0.929244 AGGATGCCTGCCATTTAGGT 59.071 50.000 0.00 0.00 40.61 3.08
5234 6383 1.270358 ACGAGTGGACCTCTCTTTTGC 60.270 52.381 18.89 0.00 38.11 3.68
5329 6480 9.695884 GATCTGAATTTCGAAGTACAGATTTTC 57.304 33.333 27.07 18.93 42.51 2.29
5339 6490 6.866770 CGAAGTACAGATTTTCTAGGTGTTGA 59.133 38.462 0.00 0.00 0.00 3.18
5348 6499 2.171840 TCTAGGTGTTGAGCTGGACTC 58.828 52.381 0.00 0.00 46.45 3.36
5364 6515 5.597806 CTGGACTCGGCAATTATGTAGTAA 58.402 41.667 0.00 0.00 0.00 2.24
5365 6516 6.169557 TGGACTCGGCAATTATGTAGTAAT 57.830 37.500 0.00 0.00 34.46 1.89
5366 6517 7.292713 TGGACTCGGCAATTATGTAGTAATA 57.707 36.000 0.00 0.00 32.70 0.98
5367 6518 7.728148 TGGACTCGGCAATTATGTAGTAATAA 58.272 34.615 0.00 0.00 32.70 1.40
5368 6519 7.654520 TGGACTCGGCAATTATGTAGTAATAAC 59.345 37.037 0.00 0.00 32.70 1.89
5369 6520 7.654520 GGACTCGGCAATTATGTAGTAATAACA 59.345 37.037 0.00 0.00 32.70 2.41
5370 6521 8.361592 ACTCGGCAATTATGTAGTAATAACAC 57.638 34.615 0.00 0.00 32.70 3.32
5371 6522 7.440255 ACTCGGCAATTATGTAGTAATAACACC 59.560 37.037 0.00 0.00 32.70 4.16
5372 6523 6.707161 TCGGCAATTATGTAGTAATAACACCC 59.293 38.462 0.00 0.00 32.70 4.61
5373 6524 6.708949 CGGCAATTATGTAGTAATAACACCCT 59.291 38.462 0.00 0.00 32.70 4.34
5374 6525 7.095355 CGGCAATTATGTAGTAATAACACCCTC 60.095 40.741 0.00 0.00 32.70 4.30
5375 6526 7.937394 GGCAATTATGTAGTAATAACACCCTCT 59.063 37.037 0.00 0.00 32.70 3.69
5376 6527 8.774586 GCAATTATGTAGTAATAACACCCTCTG 58.225 37.037 0.00 0.00 32.70 3.35
5377 6528 9.832445 CAATTATGTAGTAATAACACCCTCTGT 57.168 33.333 0.00 0.00 32.70 3.41
5380 6531 6.290294 TGTAGTAATAACACCCTCTGTTCC 57.710 41.667 0.00 0.00 42.49 3.62
5381 6532 6.021030 TGTAGTAATAACACCCTCTGTTCCT 58.979 40.000 0.00 0.00 42.49 3.36
5382 6533 7.184161 TGTAGTAATAACACCCTCTGTTCCTA 58.816 38.462 0.00 0.00 42.49 2.94
5383 6534 7.675195 TGTAGTAATAACACCCTCTGTTCCTAA 59.325 37.037 0.00 0.00 42.49 2.69
5384 6535 7.563724 AGTAATAACACCCTCTGTTCCTAAA 57.436 36.000 0.00 0.00 42.49 1.85
5385 6536 8.159229 AGTAATAACACCCTCTGTTCCTAAAT 57.841 34.615 0.00 0.00 42.49 1.40
5386 6537 8.047310 AGTAATAACACCCTCTGTTCCTAAATG 58.953 37.037 0.00 0.00 42.49 2.32
5387 6538 4.724279 AACACCCTCTGTTCCTAAATGT 57.276 40.909 0.00 0.00 38.94 2.71
5388 6539 5.836024 AACACCCTCTGTTCCTAAATGTA 57.164 39.130 0.00 0.00 38.94 2.29
5389 6540 5.836024 ACACCCTCTGTTCCTAAATGTAA 57.164 39.130 0.00 0.00 0.00 2.41
5390 6541 5.805728 ACACCCTCTGTTCCTAAATGTAAG 58.194 41.667 0.00 0.00 0.00 2.34
5391 6542 5.546499 ACACCCTCTGTTCCTAAATGTAAGA 59.454 40.000 0.00 0.00 0.00 2.10
5392 6543 5.875359 CACCCTCTGTTCCTAAATGTAAGAC 59.125 44.000 0.00 0.00 0.00 3.01
5393 6544 5.109903 CCCTCTGTTCCTAAATGTAAGACG 58.890 45.833 0.00 0.00 0.00 4.18
5394 6545 5.337330 CCCTCTGTTCCTAAATGTAAGACGT 60.337 44.000 0.00 0.00 0.00 4.34
5395 6546 6.127535 CCCTCTGTTCCTAAATGTAAGACGTA 60.128 42.308 0.00 0.00 0.00 3.57
5396 6547 7.417570 CCCTCTGTTCCTAAATGTAAGACGTAT 60.418 40.741 0.00 0.00 0.00 3.06
5397 6548 8.627403 CCTCTGTTCCTAAATGTAAGACGTATA 58.373 37.037 0.00 0.00 0.00 1.47
5411 6562 9.577110 TGTAAGACGTATATTTACAAACAGAGG 57.423 33.333 10.26 0.00 35.14 3.69
5412 6563 9.578439 GTAAGACGTATATTTACAAACAGAGGT 57.422 33.333 0.00 0.00 0.00 3.85
5414 6565 9.798994 AAGACGTATATTTACAAACAGAGGTAG 57.201 33.333 0.00 0.00 0.00 3.18
5415 6566 8.964772 AGACGTATATTTACAAACAGAGGTAGT 58.035 33.333 0.00 0.00 0.00 2.73
5423 6574 9.877178 ATTTACAAACAGAGGTAGTAGAATCTG 57.123 33.333 0.00 0.00 43.81 2.90
5424 6575 6.287589 ACAAACAGAGGTAGTAGAATCTGG 57.712 41.667 6.07 0.00 42.76 3.86
5425 6576 5.187967 ACAAACAGAGGTAGTAGAATCTGGG 59.812 44.000 6.07 0.00 42.76 4.45
5426 6577 3.917300 ACAGAGGTAGTAGAATCTGGGG 58.083 50.000 6.07 0.00 42.76 4.96
5427 6578 3.532232 ACAGAGGTAGTAGAATCTGGGGA 59.468 47.826 6.07 0.00 42.76 4.81
5428 6579 4.148838 CAGAGGTAGTAGAATCTGGGGAG 58.851 52.174 0.00 0.00 36.39 4.30
5429 6580 2.894765 GAGGTAGTAGAATCTGGGGAGC 59.105 54.545 0.00 0.00 0.00 4.70
5430 6581 2.520549 AGGTAGTAGAATCTGGGGAGCT 59.479 50.000 0.00 0.00 0.00 4.09
5431 6582 3.727923 AGGTAGTAGAATCTGGGGAGCTA 59.272 47.826 0.00 0.00 0.00 3.32
5444 6595 2.699321 GGGGAGCTACCTTTGGTACTAG 59.301 54.545 16.60 0.00 37.09 2.57
5445 6596 3.629282 GGGGAGCTACCTTTGGTACTAGA 60.629 52.174 16.60 0.00 37.09 2.43
5446 6597 3.637694 GGGAGCTACCTTTGGTACTAGAG 59.362 52.174 8.12 0.00 37.09 2.43
5447 6598 4.279982 GGAGCTACCTTTGGTACTAGAGT 58.720 47.826 0.00 0.00 37.09 3.24
5449 6600 4.279982 AGCTACCTTTGGTACTAGAGTCC 58.720 47.826 0.00 0.00 37.09 3.85
5450 6601 3.384146 GCTACCTTTGGTACTAGAGTCCC 59.616 52.174 0.00 0.00 37.09 4.46
5451 6602 3.848978 ACCTTTGGTACTAGAGTCCCT 57.151 47.619 0.00 0.00 32.11 4.20
5453 6604 5.280998 ACCTTTGGTACTAGAGTCCCTTA 57.719 43.478 0.00 0.00 32.11 2.69
5454 6605 5.022122 ACCTTTGGTACTAGAGTCCCTTAC 58.978 45.833 0.00 0.00 32.11 2.34
5496 6650 6.911250 TGAGAACTACACCAATCTCAGTAA 57.089 37.500 0.46 0.00 42.36 2.24
5543 6697 7.834068 TGAGTGTATCAGATTTCAAGCTTAC 57.166 36.000 0.00 0.00 32.77 2.34
5720 6910 2.144730 GTGATGGATCTGATCTGCTGC 58.855 52.381 16.61 0.00 0.00 5.25
5725 6915 1.595466 GATCTGATCTGCTGCAAGGG 58.405 55.000 10.37 0.00 0.00 3.95
5758 6952 1.776662 TGACCTAATCCTAGCTGCGT 58.223 50.000 0.00 0.00 0.00 5.24
5759 6953 1.409064 TGACCTAATCCTAGCTGCGTG 59.591 52.381 0.00 0.00 0.00 5.34
5817 7011 3.058983 TGTGCAATTGCGTTTCTAGTCAG 60.059 43.478 24.58 0.00 45.83 3.51
5883 7078 2.303890 TGATATCAGCGCTCATCCCATT 59.696 45.455 7.13 0.00 0.00 3.16
5889 7084 1.747355 AGCGCTCATCCCATTTTCTTG 59.253 47.619 2.64 0.00 0.00 3.02
5893 7088 4.731773 GCGCTCATCCCATTTTCTTGTAAG 60.732 45.833 0.00 0.00 0.00 2.34
5935 7130 6.072618 GCATCTCATTCCCATGTGAAGAATAG 60.073 42.308 0.00 0.00 36.68 1.73
6009 7204 4.440839 AGTTTGCCTTATGCTTAGTTGC 57.559 40.909 0.00 0.00 42.00 4.17
6012 7207 2.801483 TGCCTTATGCTTAGTTGCCAA 58.199 42.857 0.00 0.00 42.00 4.52
6071 7267 3.341823 GTGGTCATTGCATTCTCTGAGT 58.658 45.455 4.32 0.00 0.00 3.41
6124 7320 9.599866 ACATTGTCGACTTGATGAGAAATAATA 57.400 29.630 23.97 0.00 0.00 0.98
6156 7352 1.000717 TGCGACTGTGAATCGTCTCAA 60.001 47.619 0.00 0.00 41.68 3.02
6194 7390 1.060937 CGACCGCAGTAGCAATTGC 59.939 57.895 23.05 23.05 42.27 3.56
6229 7425 4.882671 AGTGGCAGCTCGTTTTAATATG 57.117 40.909 0.00 0.00 0.00 1.78
6231 7427 3.013219 TGGCAGCTCGTTTTAATATGCA 58.987 40.909 0.00 0.00 33.94 3.96
6263 7459 6.624423 GCTTGCATACACATTCTGAAGACAAT 60.624 38.462 0.00 0.00 0.00 2.71
6265 7461 7.218228 TGCATACACATTCTGAAGACAATTT 57.782 32.000 0.00 0.00 0.00 1.82
6289 7492 3.559238 TCGTTAAACGGGTACTCACTC 57.441 47.619 0.00 0.00 42.81 3.51
6293 7496 2.833631 AAACGGGTACTCACTCCTTG 57.166 50.000 0.00 0.00 0.00 3.61
6313 7516 5.452078 TTGCCAAAATCTTAGGTGTTCTG 57.548 39.130 0.00 0.00 0.00 3.02
6345 8030 8.593945 TTCTATAATTGCCTTTCTTTGTGGAT 57.406 30.769 0.00 0.00 0.00 3.41
6347 8032 9.866655 TCTATAATTGCCTTTCTTTGTGGATAT 57.133 29.630 0.00 0.00 0.00 1.63
6384 8069 5.541845 ACACTTGATGATGTCCATATACGG 58.458 41.667 0.00 0.00 35.17 4.02
6392 8077 5.391256 TGATGTCCATATACGGTAAGACCT 58.609 41.667 0.00 0.00 35.66 3.85
6445 8153 8.973182 TCCTATAAATTGATTTTAAAACGCCCT 58.027 29.630 1.97 0.00 33.60 5.19
6451 8192 3.898741 TGATTTTAAAACGCCCTCCCTTT 59.101 39.130 1.97 0.00 0.00 3.11
6452 8193 4.021807 TGATTTTAAAACGCCCTCCCTTTC 60.022 41.667 1.97 0.00 0.00 2.62
6470 8211 4.437390 CCTTTCATAATCCGTGTCTTGCAC 60.437 45.833 0.00 0.00 44.36 4.57
6480 8221 1.728971 GTGTCTTGCACGAATCTCCTG 59.271 52.381 0.00 0.00 38.45 3.86
6509 8250 5.989551 AACAAAGTGCAAAATTTAGGCAG 57.010 34.783 15.41 8.31 38.38 4.85
6512 8253 5.754890 ACAAAGTGCAAAATTTAGGCAGAAG 59.245 36.000 15.41 9.78 38.38 2.85
6516 8257 3.568007 TGCAAAATTTAGGCAGAAGTCGT 59.432 39.130 12.04 0.00 32.95 4.34
6525 8266 3.067833 AGGCAGAAGTCGTTTAAAGAGC 58.932 45.455 0.00 0.00 0.00 4.09
6529 8270 4.773510 CAGAAGTCGTTTAAAGAGCCAAC 58.226 43.478 0.00 0.00 0.00 3.77
6533 8274 4.448210 AGTCGTTTAAAGAGCCAACTTCA 58.552 39.130 0.00 0.00 0.00 3.02
6535 8276 6.228258 AGTCGTTTAAAGAGCCAACTTCATA 58.772 36.000 0.00 0.00 0.00 2.15
6547 8288 7.611467 AGAGCCAACTTCATAAATTCACATGTA 59.389 33.333 0.00 0.00 0.00 2.29
6548 8289 7.538575 AGCCAACTTCATAAATTCACATGTAC 58.461 34.615 0.00 0.00 0.00 2.90
6562 8303 9.656040 AATTCACATGTACACATTTTTATGCAT 57.344 25.926 3.79 3.79 33.61 3.96
6584 8325 9.134055 TGCATGATTTACATATTCAATTCTCCA 57.866 29.630 0.00 0.00 37.46 3.86
6671 8414 7.989947 AGGATACACTTAAAGGATTCCACTA 57.010 36.000 5.29 0.00 41.41 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.482852 TCCAGATCAACATTGTATCTCTATGA 57.517 34.615 0.00 0.00 34.38 2.15
16 17 8.366401 ACTCCAGATCAACATTGTATCTCTATG 58.634 37.037 0.00 0.00 35.87 2.23
26 27 7.041508 GCTCCTTAATACTCCAGATCAACATTG 60.042 40.741 0.00 0.00 0.00 2.82
32 33 4.345257 GTGGCTCCTTAATACTCCAGATCA 59.655 45.833 0.00 0.00 0.00 2.92
36 37 3.197766 TGTGTGGCTCCTTAATACTCCAG 59.802 47.826 0.00 0.00 0.00 3.86
52 53 3.520290 TCTTTAGGACGCTATGTGTGG 57.480 47.619 0.00 0.00 0.00 4.17
60 61 2.789409 AGGCATTTCTTTAGGACGCT 57.211 45.000 0.00 0.00 0.00 5.07
62 63 5.012328 ACTCTAGGCATTTCTTTAGGACG 57.988 43.478 0.00 0.00 0.00 4.79
64 65 7.676683 ACATACTCTAGGCATTTCTTTAGGA 57.323 36.000 0.00 0.00 0.00 2.94
75 76 4.099573 GCCTCACTAAACATACTCTAGGCA 59.900 45.833 0.00 0.00 45.00 4.75
97 98 8.417884 AGAGAAACCAATACTAAGAGACATAGC 58.582 37.037 0.00 0.00 0.00 2.97
104 105 6.800072 AGGGAGAGAAACCAATACTAAGAG 57.200 41.667 0.00 0.00 0.00 2.85
105 106 6.127423 CGAAGGGAGAGAAACCAATACTAAGA 60.127 42.308 0.00 0.00 0.00 2.10
108 109 5.266788 TCGAAGGGAGAGAAACCAATACTA 58.733 41.667 0.00 0.00 0.00 1.82
116 117 4.457834 TCATCTTCGAAGGGAGAGAAAC 57.542 45.455 24.37 0.00 0.00 2.78
198 200 1.646912 TCACAGAAATACGGGTGGGA 58.353 50.000 0.00 0.00 32.48 4.37
229 231 3.004734 AGCTTCGGATTTTTCAAGGTGTG 59.995 43.478 0.00 0.00 0.00 3.82
239 241 3.609853 TGTGCAGATAGCTTCGGATTTT 58.390 40.909 0.00 0.00 45.94 1.82
241 243 2.988010 TGTGCAGATAGCTTCGGATT 57.012 45.000 0.00 0.00 45.94 3.01
242 244 2.632028 AGATGTGCAGATAGCTTCGGAT 59.368 45.455 0.00 0.00 45.94 4.18
243 245 2.034878 AGATGTGCAGATAGCTTCGGA 58.965 47.619 0.00 0.00 45.94 4.55
244 246 2.522836 AGATGTGCAGATAGCTTCGG 57.477 50.000 0.00 0.00 45.94 4.30
246 248 5.557893 CGCTTAAAGATGTGCAGATAGCTTC 60.558 44.000 12.20 0.00 45.94 3.86
248 250 3.806521 CGCTTAAAGATGTGCAGATAGCT 59.193 43.478 12.20 0.00 45.94 3.32
249 251 3.804325 TCGCTTAAAGATGTGCAGATAGC 59.196 43.478 0.00 0.57 45.96 2.97
250 252 7.643528 TTATCGCTTAAAGATGTGCAGATAG 57.356 36.000 0.00 0.00 0.00 2.08
251 253 8.607441 ATTTATCGCTTAAAGATGTGCAGATA 57.393 30.769 0.00 0.00 33.40 1.98
252 254 6.925610 TTTATCGCTTAAAGATGTGCAGAT 57.074 33.333 0.00 0.00 0.00 2.90
253 255 6.292328 CGATTTATCGCTTAAAGATGTGCAGA 60.292 38.462 0.00 0.00 43.84 4.26
294 296 2.665185 GTTGGCCTGTCGCGAAGT 60.665 61.111 12.06 0.00 35.68 3.01
311 313 0.035056 ACCCAGAATCTTTGGAGGCG 60.035 55.000 2.87 0.00 37.96 5.52
324 326 1.264749 CCAGGAATGACCGACCCAGA 61.265 60.000 0.00 0.00 44.74 3.86
341 343 1.483004 TCCTCGGCGATAAAATGTCCA 59.517 47.619 11.27 0.00 0.00 4.02
353 355 1.606903 ACTATCTAGGTTCCTCGGCG 58.393 55.000 0.00 0.00 0.00 6.46
377 379 0.827925 TGGTTCGCAGAGACTCCACT 60.828 55.000 0.00 0.00 38.43 4.00
386 388 3.394674 TCTTACAATGTGGTTCGCAGA 57.605 42.857 0.00 0.00 0.00 4.26
395 397 3.000727 GACGGAGGGTTCTTACAATGTG 58.999 50.000 0.00 0.00 0.00 3.21
396 398 2.353406 CGACGGAGGGTTCTTACAATGT 60.353 50.000 0.00 0.00 0.00 2.71
398 400 1.405121 GCGACGGAGGGTTCTTACAAT 60.405 52.381 0.00 0.00 0.00 2.71
432 434 4.441356 GGCAAAAATTCAAGTGGACAGTGA 60.441 41.667 0.00 0.00 0.00 3.41
455 457 3.737172 CCGCCGGCCAAAAGAGTG 61.737 66.667 23.46 2.52 0.00 3.51
457 459 3.995506 ATCCCGCCGGCCAAAAGAG 62.996 63.158 23.46 4.25 0.00 2.85
458 460 3.987954 GATCCCGCCGGCCAAAAGA 62.988 63.158 23.46 10.97 0.00 2.52
465 467 4.688966 GAGATGGATCCCGCCGGC 62.689 72.222 19.07 19.07 0.00 6.13
466 468 2.919856 AGAGATGGATCCCGCCGG 60.920 66.667 9.90 0.00 0.00 6.13
467 469 2.152297 CTGAGAGATGGATCCCGCCG 62.152 65.000 9.90 0.00 0.00 6.46
468 470 1.670590 CTGAGAGATGGATCCCGCC 59.329 63.158 9.90 0.00 0.00 6.13
469 471 1.118356 ACCTGAGAGATGGATCCCGC 61.118 60.000 9.90 0.45 0.00 6.13
470 472 1.069823 CAACCTGAGAGATGGATCCCG 59.930 57.143 9.90 0.00 0.00 5.14
471 473 2.103941 GACAACCTGAGAGATGGATCCC 59.896 54.545 9.90 0.00 0.00 3.85
472 474 3.037549 AGACAACCTGAGAGATGGATCC 58.962 50.000 4.20 4.20 0.00 3.36
473 475 3.243367 CGAGACAACCTGAGAGATGGATC 60.243 52.174 0.00 0.00 0.00 3.36
474 476 2.692557 CGAGACAACCTGAGAGATGGAT 59.307 50.000 0.00 0.00 0.00 3.41
475 477 2.095461 CGAGACAACCTGAGAGATGGA 58.905 52.381 0.00 0.00 0.00 3.41
476 478 1.135915 CCGAGACAACCTGAGAGATGG 59.864 57.143 0.00 0.00 0.00 3.51
477 479 2.095461 TCCGAGACAACCTGAGAGATG 58.905 52.381 0.00 0.00 0.00 2.90
478 480 2.374184 CTCCGAGACAACCTGAGAGAT 58.626 52.381 0.00 0.00 0.00 2.75
479 481 1.614583 CCTCCGAGACAACCTGAGAGA 60.615 57.143 0.00 0.00 0.00 3.10
480 482 0.814457 CCTCCGAGACAACCTGAGAG 59.186 60.000 0.00 0.00 0.00 3.20
481 483 0.112606 ACCTCCGAGACAACCTGAGA 59.887 55.000 0.00 0.00 0.00 3.27
482 484 0.244994 CACCTCCGAGACAACCTGAG 59.755 60.000 0.00 0.00 0.00 3.35
483 485 0.469331 ACACCTCCGAGACAACCTGA 60.469 55.000 0.00 0.00 0.00 3.86
484 486 0.319900 CACACCTCCGAGACAACCTG 60.320 60.000 0.00 0.00 0.00 4.00
485 487 0.759436 ACACACCTCCGAGACAACCT 60.759 55.000 0.00 0.00 0.00 3.50
486 488 0.600255 CACACACCTCCGAGACAACC 60.600 60.000 0.00 0.00 0.00 3.77
487 489 0.387929 TCACACACCTCCGAGACAAC 59.612 55.000 0.00 0.00 0.00 3.32
488 490 0.673985 CTCACACACCTCCGAGACAA 59.326 55.000 0.00 0.00 0.00 3.18
489 491 1.806461 GCTCACACACCTCCGAGACA 61.806 60.000 0.00 0.00 0.00 3.41
490 492 1.080434 GCTCACACACCTCCGAGAC 60.080 63.158 0.00 0.00 0.00 3.36
491 493 1.527433 CTGCTCACACACCTCCGAGA 61.527 60.000 0.00 0.00 0.00 4.04
492 494 1.080230 CTGCTCACACACCTCCGAG 60.080 63.158 0.00 0.00 0.00 4.63
493 495 3.051210 CTGCTCACACACCTCCGA 58.949 61.111 0.00 0.00 0.00 4.55
494 496 2.740055 GCTGCTCACACACCTCCG 60.740 66.667 0.00 0.00 0.00 4.63
495 497 2.359230 GGCTGCTCACACACCTCC 60.359 66.667 0.00 0.00 0.00 4.30
496 498 1.963338 GTGGCTGCTCACACACCTC 60.963 63.158 13.89 0.00 37.54 3.85
497 499 2.111878 GTGGCTGCTCACACACCT 59.888 61.111 13.89 0.00 37.54 4.00
498 500 2.203195 TGTGGCTGCTCACACACC 60.203 61.111 16.47 0.00 42.20 4.16
514 516 4.354071 TGCAAACCGATGATACAACATG 57.646 40.909 0.00 0.00 0.00 3.21
518 520 4.094739 CAGACATGCAAACCGATGATACAA 59.905 41.667 0.00 0.00 0.00 2.41
547 549 9.772605 ATCTATTTGTCCAGATCTATCTCTGAT 57.227 33.333 0.00 0.00 44.48 2.90
621 623 6.959639 ATGTCTTTCTTCAGCACCTAAAAA 57.040 33.333 0.00 0.00 0.00 1.94
622 624 8.635765 AATATGTCTTTCTTCAGCACCTAAAA 57.364 30.769 0.00 0.00 0.00 1.52
623 625 8.514594 CAAATATGTCTTTCTTCAGCACCTAAA 58.485 33.333 0.00 0.00 0.00 1.85
624 626 7.882791 TCAAATATGTCTTTCTTCAGCACCTAA 59.117 33.333 0.00 0.00 0.00 2.69
625 627 7.394016 TCAAATATGTCTTTCTTCAGCACCTA 58.606 34.615 0.00 0.00 0.00 3.08
626 628 6.240894 TCAAATATGTCTTTCTTCAGCACCT 58.759 36.000 0.00 0.00 0.00 4.00
627 629 6.500684 TCAAATATGTCTTTCTTCAGCACC 57.499 37.500 0.00 0.00 0.00 5.01
628 630 6.026513 GCTCAAATATGTCTTTCTTCAGCAC 58.973 40.000 0.00 0.00 0.00 4.40
629 631 5.706833 TGCTCAAATATGTCTTTCTTCAGCA 59.293 36.000 0.00 0.00 0.00 4.41
630 632 6.187125 TGCTCAAATATGTCTTTCTTCAGC 57.813 37.500 0.00 0.00 0.00 4.26
633 635 6.913170 TGGTTGCTCAAATATGTCTTTCTTC 58.087 36.000 0.00 0.00 0.00 2.87
681 1169 4.084380 GGCCTGCGAAAAATTCTCAAAAAG 60.084 41.667 0.00 0.00 0.00 2.27
686 1174 1.614996 TGGCCTGCGAAAAATTCTCA 58.385 45.000 3.32 0.00 0.00 3.27
721 1209 4.762251 CCACAGATGATGATGATGATTGCT 59.238 41.667 0.00 0.00 0.00 3.91
722 1210 4.760204 TCCACAGATGATGATGATGATTGC 59.240 41.667 0.00 0.00 0.00 3.56
724 1212 6.435292 TCTCCACAGATGATGATGATGATT 57.565 37.500 0.00 0.00 0.00 2.57
727 1215 4.452795 GCTTCTCCACAGATGATGATGATG 59.547 45.833 0.00 0.00 0.00 3.07
733 1221 3.387374 ACCTAGCTTCTCCACAGATGATG 59.613 47.826 0.00 0.00 0.00 3.07
736 1224 4.202202 CCTTACCTAGCTTCTCCACAGATG 60.202 50.000 0.00 0.00 0.00 2.90
738 1226 3.366396 CCTTACCTAGCTTCTCCACAGA 58.634 50.000 0.00 0.00 0.00 3.41
889 1382 0.251073 TGTAGCGGAGGGTTTAAGCC 59.749 55.000 4.84 4.84 35.59 4.35
944 1450 3.816398 AAGAAAAGGAAGAAGGGGAGG 57.184 47.619 0.00 0.00 0.00 4.30
1070 1579 4.354943 AGGAGGAGGGGGTGGTGG 62.355 72.222 0.00 0.00 0.00 4.61
1071 1580 2.689034 GAGGAGGAGGGGGTGGTG 60.689 72.222 0.00 0.00 0.00 4.17
1072 1581 4.026357 GGAGGAGGAGGGGGTGGT 62.026 72.222 0.00 0.00 0.00 4.16
1252 1770 1.504275 AACTTGAGCAGGCCCCTGAT 61.504 55.000 18.20 11.94 46.09 2.90
1433 1954 1.953686 CTGAAGCAAACGGGAAGGAAA 59.046 47.619 0.00 0.00 0.00 3.13
1525 2046 0.108138 AATTCTGAAGCGTCCTCCGG 60.108 55.000 0.00 0.00 36.94 5.14
1553 2074 1.145162 GGCGCGGCATTGGTTAATTG 61.145 55.000 29.32 0.00 0.00 2.32
1631 2155 5.104652 GGCCAATCAGGTACTCCTTAAACTA 60.105 44.000 0.00 0.00 43.07 2.24
1632 2156 4.324331 GGCCAATCAGGTACTCCTTAAACT 60.324 45.833 0.00 0.00 43.07 2.66
1633 2157 3.945921 GGCCAATCAGGTACTCCTTAAAC 59.054 47.826 0.00 0.00 43.07 2.01
1637 2161 1.972588 AGGCCAATCAGGTACTCCTT 58.027 50.000 5.01 0.00 43.07 3.36
1683 2211 4.362279 CAGTGCTTTGTTGCATTACAAGT 58.638 39.130 4.28 0.00 45.23 3.16
1890 2833 9.908747 ACACTCTAGTATTAGACATAGTTGAGT 57.091 33.333 7.54 7.54 39.11 3.41
2074 3028 7.512992 AGAGTAGAAGCTGTAATATGGCAATT 58.487 34.615 0.00 0.00 0.00 2.32
2090 3044 6.610741 AAACAAACAGCAAGAGAGTAGAAG 57.389 37.500 0.00 0.00 0.00 2.85
2093 3047 6.610741 AGAAAACAAACAGCAAGAGAGTAG 57.389 37.500 0.00 0.00 0.00 2.57
2118 3072 2.261729 GAGGAAAGAAGTGGGAGGAGT 58.738 52.381 0.00 0.00 0.00 3.85
2125 3079 3.190118 GCATCAAGTGAGGAAAGAAGTGG 59.810 47.826 0.00 0.00 0.00 4.00
2268 3226 1.272490 TGTGAAACAGAGGGAGTAGCG 59.728 52.381 0.00 0.00 45.67 4.26
2330 3289 3.242413 TGCCTCGTAATCGTAGAACGTAC 60.242 47.826 0.00 0.00 43.58 3.67
2331 3290 2.935849 TGCCTCGTAATCGTAGAACGTA 59.064 45.455 0.00 0.00 43.58 3.57
2332 3291 1.739466 TGCCTCGTAATCGTAGAACGT 59.261 47.619 0.00 0.00 43.58 3.99
2334 3293 5.041940 AGAATTGCCTCGTAATCGTAGAAC 58.958 41.667 0.00 0.00 43.58 3.01
2673 3633 7.817418 TGCCATTATAAGATTTTACAGTCCC 57.183 36.000 0.00 0.00 0.00 4.46
2690 3650 1.402588 CGCTGCACAAACATGCCATTA 60.403 47.619 0.00 0.00 45.50 1.90
3233 4196 1.271379 CTGCACATTGCCACTCACATT 59.729 47.619 0.00 0.00 44.23 2.71
3422 4385 1.344763 GCACAACAGGGACTAGTCTGT 59.655 52.381 21.88 16.12 45.06 3.41
3423 4386 1.620819 AGCACAACAGGGACTAGTCTG 59.379 52.381 21.88 15.49 36.02 3.51
3498 4461 3.885976 TTGGGTAAACTGTCATGGGAA 57.114 42.857 0.00 0.00 0.00 3.97
3931 5006 6.227298 ACATAACAGTCTACCTGAAGGATG 57.773 41.667 2.62 0.00 44.49 3.51
4087 5163 1.079503 GTAAAGCCAGGCAGTCTTCG 58.920 55.000 15.80 0.00 0.00 3.79
4208 5297 7.931407 CACATACTTATTTAGGAGCACATACCA 59.069 37.037 0.00 0.00 0.00 3.25
4598 5704 2.303890 TCCAGCAACTCAGTGTCATCAT 59.696 45.455 0.00 0.00 0.00 2.45
4648 5754 0.464452 GGATACAGGAGACGGTTGGG 59.536 60.000 0.00 0.00 40.14 4.12
4767 5878 8.353423 AGATCTGTAATGTAAAAGTTGGCATT 57.647 30.769 0.00 0.00 35.90 3.56
4772 5883 7.592938 TGGCAAGATCTGTAATGTAAAAGTTG 58.407 34.615 0.00 0.00 0.00 3.16
4868 5979 2.808543 CTCCAGTTCTTTGCTACGCTTT 59.191 45.455 0.00 0.00 0.00 3.51
4914 6025 9.851686 ATATTCTAAATGACAGGCATCTTGTAA 57.148 29.630 0.00 0.00 35.78 2.41
4944 6055 5.412526 GTCAATGTAAAGACGACAAACCA 57.587 39.130 0.00 0.00 0.00 3.67
4999 6110 3.144657 AGAATGCAACCATGACAGTCA 57.855 42.857 5.50 5.50 33.31 3.41
5035 6147 9.101655 GACGGCAAACCTAAAATAGTCTAAATA 57.898 33.333 0.00 0.00 0.00 1.40
5108 6220 4.439305 GCAGTAGAATGCAACCATGAAA 57.561 40.909 0.00 0.00 45.77 2.69
5140 6253 6.744112 TGTAAAGACAGCAAAACCTAAATGG 58.256 36.000 0.00 0.00 42.93 3.16
5234 6383 0.667993 AGTCCACAACAAATGCCACG 59.332 50.000 0.00 0.00 0.00 4.94
5329 6480 1.135257 CGAGTCCAGCTCAACACCTAG 60.135 57.143 0.00 0.00 44.33 3.02
5339 6490 1.210478 ACATAATTGCCGAGTCCAGCT 59.790 47.619 1.87 0.00 0.00 4.24
5348 6499 6.708949 AGGGTGTTATTACTACATAATTGCCG 59.291 38.462 0.00 0.00 35.08 5.69
5367 6518 5.546499 TCTTACATTTAGGAACAGAGGGTGT 59.454 40.000 0.00 0.00 43.24 4.16
5368 6519 5.875359 GTCTTACATTTAGGAACAGAGGGTG 59.125 44.000 0.00 0.00 0.00 4.61
5369 6520 5.337330 CGTCTTACATTTAGGAACAGAGGGT 60.337 44.000 0.00 0.00 0.00 4.34
5370 6521 5.109903 CGTCTTACATTTAGGAACAGAGGG 58.890 45.833 0.00 0.00 0.00 4.30
5371 6522 5.721232 ACGTCTTACATTTAGGAACAGAGG 58.279 41.667 0.00 0.00 0.00 3.69
5385 6536 9.577110 CCTCTGTTTGTAAATATACGTCTTACA 57.423 33.333 0.00 0.00 34.55 2.41
5386 6537 9.578439 ACCTCTGTTTGTAAATATACGTCTTAC 57.422 33.333 0.00 0.00 34.60 2.34
5388 6539 9.798994 CTACCTCTGTTTGTAAATATACGTCTT 57.201 33.333 0.00 0.00 34.60 3.01
5389 6540 8.964772 ACTACCTCTGTTTGTAAATATACGTCT 58.035 33.333 0.00 0.00 34.60 4.18
5397 6548 9.877178 CAGATTCTACTACCTCTGTTTGTAAAT 57.123 33.333 0.00 0.00 32.35 1.40
5398 6549 8.311836 CCAGATTCTACTACCTCTGTTTGTAAA 58.688 37.037 0.00 0.00 34.62 2.01
5399 6550 7.093465 CCCAGATTCTACTACCTCTGTTTGTAA 60.093 40.741 0.00 0.00 34.62 2.41
5400 6551 6.380274 CCCAGATTCTACTACCTCTGTTTGTA 59.620 42.308 0.00 0.00 34.62 2.41
5401 6552 5.187967 CCCAGATTCTACTACCTCTGTTTGT 59.812 44.000 0.00 0.00 34.62 2.83
5402 6553 5.395768 CCCCAGATTCTACTACCTCTGTTTG 60.396 48.000 0.00 0.00 34.62 2.93
5403 6554 4.717280 CCCCAGATTCTACTACCTCTGTTT 59.283 45.833 0.00 0.00 34.62 2.83
5404 6555 4.016479 TCCCCAGATTCTACTACCTCTGTT 60.016 45.833 0.00 0.00 34.62 3.16
5405 6556 3.532232 TCCCCAGATTCTACTACCTCTGT 59.468 47.826 0.00 0.00 34.62 3.41
5406 6557 4.148838 CTCCCCAGATTCTACTACCTCTG 58.851 52.174 0.00 0.00 35.88 3.35
5407 6558 3.437344 GCTCCCCAGATTCTACTACCTCT 60.437 52.174 0.00 0.00 0.00 3.69
5408 6559 2.894765 GCTCCCCAGATTCTACTACCTC 59.105 54.545 0.00 0.00 0.00 3.85
5409 6560 2.520549 AGCTCCCCAGATTCTACTACCT 59.479 50.000 0.00 0.00 0.00 3.08
5410 6561 2.965562 AGCTCCCCAGATTCTACTACC 58.034 52.381 0.00 0.00 0.00 3.18
5411 6562 3.827876 GGTAGCTCCCCAGATTCTACTAC 59.172 52.174 0.00 0.00 32.66 2.73
5412 6563 3.727923 AGGTAGCTCCCCAGATTCTACTA 59.272 47.826 0.00 0.00 36.75 1.82
5413 6564 2.520549 AGGTAGCTCCCCAGATTCTACT 59.479 50.000 0.00 0.00 36.75 2.57
5414 6565 2.965562 AGGTAGCTCCCCAGATTCTAC 58.034 52.381 0.00 0.00 36.75 2.59
5415 6566 3.708236 AAGGTAGCTCCCCAGATTCTA 57.292 47.619 0.00 0.00 36.75 2.10
5416 6567 2.507471 CAAAGGTAGCTCCCCAGATTCT 59.493 50.000 0.00 0.00 36.75 2.40
5417 6568 2.422093 CCAAAGGTAGCTCCCCAGATTC 60.422 54.545 0.00 0.00 36.75 2.52
5418 6569 1.566231 CCAAAGGTAGCTCCCCAGATT 59.434 52.381 0.00 0.00 36.75 2.40
5419 6570 1.216990 CCAAAGGTAGCTCCCCAGAT 58.783 55.000 0.00 0.00 36.75 2.90
5420 6571 0.178873 ACCAAAGGTAGCTCCCCAGA 60.179 55.000 0.00 0.00 32.11 3.86
5421 6572 1.209747 GTACCAAAGGTAGCTCCCCAG 59.790 57.143 0.00 0.00 39.02 4.45
5422 6573 1.203389 AGTACCAAAGGTAGCTCCCCA 60.203 52.381 0.00 0.00 39.02 4.96
5423 6574 1.581223 AGTACCAAAGGTAGCTCCCC 58.419 55.000 0.00 0.00 39.02 4.81
5424 6575 3.637694 CTCTAGTACCAAAGGTAGCTCCC 59.362 52.174 0.00 0.00 39.02 4.30
5425 6576 4.279982 ACTCTAGTACCAAAGGTAGCTCC 58.720 47.826 0.00 0.00 39.02 4.70
5426 6577 4.338964 GGACTCTAGTACCAAAGGTAGCTC 59.661 50.000 0.00 0.00 39.02 4.09
5427 6578 4.279982 GGACTCTAGTACCAAAGGTAGCT 58.720 47.826 0.00 0.00 39.02 3.32
5428 6579 4.652421 GGACTCTAGTACCAAAGGTAGC 57.348 50.000 0.00 0.00 39.02 3.58
5450 6601 6.317140 TCAAAGAAGCATGATGCCTTAGTAAG 59.683 38.462 14.72 2.65 46.52 2.34
5451 6602 6.179756 TCAAAGAAGCATGATGCCTTAGTAA 58.820 36.000 14.72 0.00 46.52 2.24
5453 6604 4.592942 TCAAAGAAGCATGATGCCTTAGT 58.407 39.130 14.72 0.00 46.52 2.24
5454 6605 4.880120 TCTCAAAGAAGCATGATGCCTTAG 59.120 41.667 14.72 6.80 46.52 2.18
5496 6650 6.211184 TCAAGGTCAATGTCCTAATTTTGCAT 59.789 34.615 0.00 0.00 34.56 3.96
5543 6697 4.524316 TCAAAAATCCAGACAGGCATTG 57.476 40.909 0.00 0.00 37.29 2.82
5620 6792 2.827322 TGGCCATTCAATTCACAGAAGG 59.173 45.455 0.00 0.00 0.00 3.46
5720 6910 2.037511 TCAATTTGGAGCTTTGCCCTTG 59.962 45.455 0.00 0.00 0.00 3.61
5725 6915 4.519540 TTAGGTCAATTTGGAGCTTTGC 57.480 40.909 3.18 0.00 42.62 3.68
5817 7011 0.817654 GCCCAAACTACCAAGCCATC 59.182 55.000 0.00 0.00 0.00 3.51
5872 7067 4.949856 TCCTTACAAGAAAATGGGATGAGC 59.050 41.667 0.00 0.00 0.00 4.26
5883 7078 8.340618 CAAGAAATGGAGATCCTTACAAGAAA 57.659 34.615 0.00 0.00 36.82 2.52
6009 7204 3.495193 CTCATCTCAACGCATGTTTTGG 58.505 45.455 8.13 1.56 35.72 3.28
6012 7207 1.470098 GCCTCATCTCAACGCATGTTT 59.530 47.619 0.00 0.00 35.72 2.83
6071 7267 4.065789 ACGATGCGTAGTCATCTCTATGA 58.934 43.478 0.00 0.00 38.73 2.15
6096 7292 2.995939 TCTCATCAAGTCGACAATGTGC 59.004 45.455 19.50 0.00 0.00 4.57
6156 7352 2.549754 CGAAGAGTGAATTTGGTGCAGT 59.450 45.455 0.00 0.00 0.00 4.40
6194 7390 3.313526 GCTGCCACTAATCCATGTTACAG 59.686 47.826 0.00 0.00 0.00 2.74
6229 7425 2.419673 TGTGTATGCAAGCTGTGTATGC 59.580 45.455 0.21 0.21 40.45 3.14
6231 7427 5.065602 CAGAATGTGTATGCAAGCTGTGTAT 59.934 40.000 0.00 0.00 36.42 2.29
6265 7461 5.115480 AGTGAGTACCCGTTTAACGAAAAA 58.885 37.500 19.61 0.00 46.05 1.94
6281 7477 4.640771 AGATTTTGGCAAGGAGTGAGTA 57.359 40.909 0.00 0.00 0.00 2.59
6282 7478 3.515602 AGATTTTGGCAAGGAGTGAGT 57.484 42.857 0.00 0.00 0.00 3.41
6284 7487 4.202567 ACCTAAGATTTTGGCAAGGAGTGA 60.203 41.667 6.16 0.00 0.00 3.41
6289 7492 4.524328 AGAACACCTAAGATTTTGGCAAGG 59.476 41.667 0.00 0.00 0.00 3.61
6293 7496 3.670627 CGCAGAACACCTAAGATTTTGGC 60.671 47.826 0.00 0.00 0.00 4.52
6313 7516 3.127425 AGGCAATTATAGAAGGACCGC 57.873 47.619 0.00 0.00 0.00 5.68
6345 8030 7.390162 TCATCAAGTGTACAGAAACATTGCATA 59.610 33.333 0.00 0.00 0.00 3.14
6347 8032 5.530543 TCATCAAGTGTACAGAAACATTGCA 59.469 36.000 0.00 0.00 0.00 4.08
6439 8147 1.143073 GGATTATGAAAGGGAGGGCGT 59.857 52.381 0.00 0.00 0.00 5.68
6441 8149 1.143073 ACGGATTATGAAAGGGAGGGC 59.857 52.381 0.00 0.00 0.00 5.19
6443 8151 3.134804 AGACACGGATTATGAAAGGGAGG 59.865 47.826 0.00 0.00 0.00 4.30
6445 8153 4.513442 CAAGACACGGATTATGAAAGGGA 58.487 43.478 0.00 0.00 0.00 4.20
6480 8221 7.696035 CCTAAATTTTGCACTTTGTTTGGAAAC 59.304 33.333 0.00 0.00 34.45 2.78
6491 8232 5.532557 GACTTCTGCCTAAATTTTGCACTT 58.467 37.500 10.11 0.00 0.00 3.16
6496 8237 8.568732 TTTAAACGACTTCTGCCTAAATTTTG 57.431 30.769 0.00 0.00 0.00 2.44
6509 8250 5.007332 TGAAGTTGGCTCTTTAAACGACTTC 59.993 40.000 20.00 20.00 46.87 3.01
6512 8253 4.806342 TGAAGTTGGCTCTTTAAACGAC 57.194 40.909 0.00 0.00 0.00 4.34
6516 8257 9.691362 GTGAATTTATGAAGTTGGCTCTTTAAA 57.309 29.630 0.00 0.00 0.00 1.52
6525 8266 8.296000 TGTGTACATGTGAATTTATGAAGTTGG 58.704 33.333 9.11 0.00 0.00 3.77
6535 8276 9.486497 TGCATAAAAATGTGTACATGTGAATTT 57.514 25.926 9.11 6.36 36.56 1.82
6584 8325 7.662669 CCTTGGAAATTTGGAAATTGACAAGAT 59.337 33.333 25.19 4.15 44.73 2.40
6591 8332 5.868454 ACCTCCTTGGAAATTTGGAAATTG 58.132 37.500 0.00 0.00 37.69 2.32
6596 8337 4.469469 AGAACCTCCTTGGAAATTTGGA 57.531 40.909 0.00 0.00 39.71 3.53
6648 8391 8.429641 TGATAGTGGAATCCTTTAAGTGTATCC 58.570 37.037 0.00 0.00 0.00 2.59
6656 8399 7.872138 AGTTGGATGATAGTGGAATCCTTTAA 58.128 34.615 0.00 0.00 40.53 1.52
6657 8400 7.451731 AGTTGGATGATAGTGGAATCCTTTA 57.548 36.000 0.00 0.00 40.53 1.85
6671 8414 5.118990 CCTACACGATTCAAGTTGGATGAT 58.881 41.667 0.00 0.00 31.16 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.