Multiple sequence alignment - TraesCS1B01G344000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G344000 chr1B 100.000 3309 0 0 1 3309 572311461 572308153 0.000000e+00 6111
1 TraesCS1B01G344000 chr1D 93.392 2951 134 24 1 2909 423059645 423056714 0.000000e+00 4313
2 TraesCS1B01G344000 chr1D 90.865 416 32 6 2899 3309 423056604 423056190 1.340000e-153 553
3 TraesCS1B01G344000 chr1A 93.059 2579 119 22 1 2553 518989200 518986656 0.000000e+00 3716
4 TraesCS1B01G344000 chr3D 90.999 2333 156 33 530 2837 573119657 573121960 0.000000e+00 3096
5 TraesCS1B01G344000 chr3A 92.088 2136 135 21 530 2640 707124454 707126580 0.000000e+00 2977
6 TraesCS1B01G344000 chr3B 91.351 2139 138 28 530 2641 762307112 762309230 0.000000e+00 2881
7 TraesCS1B01G344000 chr7D 93.958 811 44 4 668 1475 139369684 139368876 0.000000e+00 1221
8 TraesCS1B01G344000 chr7D 92.241 116 9 0 420 535 139369858 139369743 7.350000e-37 165
9 TraesCS1B01G344000 chr4A 91.502 812 62 5 669 1475 220627983 220627174 0.000000e+00 1110
10 TraesCS1B01G344000 chr6A 93.210 162 10 1 1315 1475 395653971 395654132 1.530000e-58 237
11 TraesCS1B01G344000 chr6A 75.987 304 64 8 3013 3309 446526933 446527234 7.400000e-32 148
12 TraesCS1B01G344000 chr2A 91.975 162 12 1 1315 1475 315573675 315573836 3.320000e-55 226
13 TraesCS1B01G344000 chr4D 76.791 349 73 8 2967 3309 111948088 111948434 4.360000e-44 189
14 TraesCS1B01G344000 chr5B 78.210 257 48 8 3049 3301 59908168 59907916 1.230000e-34 158
15 TraesCS1B01G344000 chr6B 77.559 254 50 7 3017 3265 477698804 477699055 2.660000e-31 147
16 TraesCS1B01G344000 chr6D 80.571 175 30 4 3138 3309 309726969 309727142 7.450000e-27 132
17 TraesCS1B01G344000 chr5A 80.000 160 21 4 3105 3263 45290623 45290474 1.260000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G344000 chr1B 572308153 572311461 3308 True 6111 6111 100.0000 1 3309 1 chr1B.!!$R1 3308
1 TraesCS1B01G344000 chr1D 423056190 423059645 3455 True 2433 4313 92.1285 1 3309 2 chr1D.!!$R1 3308
2 TraesCS1B01G344000 chr1A 518986656 518989200 2544 True 3716 3716 93.0590 1 2553 1 chr1A.!!$R1 2552
3 TraesCS1B01G344000 chr3D 573119657 573121960 2303 False 3096 3096 90.9990 530 2837 1 chr3D.!!$F1 2307
4 TraesCS1B01G344000 chr3A 707124454 707126580 2126 False 2977 2977 92.0880 530 2640 1 chr3A.!!$F1 2110
5 TraesCS1B01G344000 chr3B 762307112 762309230 2118 False 2881 2881 91.3510 530 2641 1 chr3B.!!$F1 2111
6 TraesCS1B01G344000 chr7D 139368876 139369858 982 True 693 1221 93.0995 420 1475 2 chr7D.!!$R1 1055
7 TraesCS1B01G344000 chr4A 220627174 220627983 809 True 1110 1110 91.5020 669 1475 1 chr4A.!!$R1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 601 0.249447 TGTGAAGGCTGTGTCAGTCG 60.249 55.0 0.0 0.0 41.46 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2346 2415 0.90891 TTTTCTATCCTGCCTCGCCA 59.091 50.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.135664 ACGAGACTCCAAACTGAACG 57.864 50.000 0.00 0.00 0.00 3.95
202 208 3.957586 CACAGCAGCCCCCACAGA 61.958 66.667 0.00 0.00 0.00 3.41
238 244 1.158434 CTACGGGATCTCGAGGTAGC 58.842 60.000 24.50 0.00 0.00 3.58
241 247 0.820074 CGGGATCTCGAGGTAGCTGT 60.820 60.000 10.16 0.00 0.00 4.40
256 272 3.302347 CTGTCCGCTTCCCGCTTCT 62.302 63.158 0.00 0.00 36.13 2.85
460 487 0.987294 AATCTGTGTCAGAGGTGGGG 59.013 55.000 5.71 0.00 44.08 4.96
490 517 2.954684 CGACCTACTTGGGCCTGCA 61.955 63.158 4.53 0.00 42.31 4.41
504 531 1.342819 GCCTGCATACTCGGATCTCTT 59.657 52.381 0.00 0.00 0.00 2.85
551 595 0.478072 TTGGGATGTGAAGGCTGTGT 59.522 50.000 0.00 0.00 0.00 3.72
557 601 0.249447 TGTGAAGGCTGTGTCAGTCG 60.249 55.000 0.00 0.00 41.46 4.18
578 622 3.578688 GAAACCACATGTCCTGCAAATC 58.421 45.455 0.00 0.00 0.00 2.17
650 695 3.961477 TCGCACATTGCATAATGGTAC 57.039 42.857 3.53 0.00 46.33 3.34
663 710 5.465390 GCATAATGGTACGCATAGTTCAAGA 59.535 40.000 0.00 0.00 0.00 3.02
666 713 2.093869 TGGTACGCATAGTTCAAGACCC 60.094 50.000 0.00 0.00 0.00 4.46
733 792 3.062639 CAGGTAGCTTGAGTTATTGTGCG 59.937 47.826 0.00 0.00 0.00 5.34
803 862 6.955364 ACTGCTATGGATATATGAAGCACAT 58.045 36.000 0.00 2.31 42.39 3.21
826 885 5.332743 TCTGAAGAAGCCCCATATTGTTTT 58.667 37.500 0.00 0.00 0.00 2.43
869 929 8.940952 AGTATTTTGTCTGTTTCAGATCTTAGC 58.059 33.333 0.00 0.00 42.73 3.09
964 1026 1.293924 CGGCCTGATTAAGACTGCTG 58.706 55.000 0.00 0.00 0.00 4.41
981 1043 1.405105 GCTGCAACACTTTGAGGTTCA 59.595 47.619 0.00 0.00 34.24 3.18
994 1056 8.526147 CACTTTGAGGTTCAATCTCCAATTAAT 58.474 33.333 0.00 0.00 36.11 1.40
1029 1091 2.178912 TGAAGGTCCCAAAGCGTTAG 57.821 50.000 0.00 0.00 0.00 2.34
1227 1292 1.422531 CTCAGAGATTGGGAGGGAGG 58.577 60.000 0.00 0.00 0.00 4.30
1239 1304 2.435059 GGGAGGCGTGTTCTGCTC 60.435 66.667 0.00 0.00 0.00 4.26
1419 1485 1.340657 GCTCTCGCTCAGTGTCGTTG 61.341 60.000 7.25 3.57 0.00 4.10
1467 1533 1.668047 GCTTGTGGCATGCTGTTCTTC 60.668 52.381 18.92 0.00 41.35 2.87
1597 1663 1.610522 CTGACCTTCCAAAAGTGGCAG 59.389 52.381 0.00 0.00 45.54 4.85
1830 1896 5.337571 GGATATGGGATCGTCAAAGATGCTA 60.338 44.000 0.00 0.00 38.73 3.49
1924 1992 7.741785 TCTTATCAGTTACCAAGACAAGGAAA 58.258 34.615 0.00 0.00 0.00 3.13
1972 2040 1.308069 CGGCTGTTGCACTTATGGCT 61.308 55.000 0.00 0.00 41.91 4.75
1981 2049 2.293170 GCACTTATGGCTCTTCCTTCC 58.707 52.381 0.00 0.00 35.26 3.46
1987 2055 0.836400 TGGCTCTTCCTTCCTTCGGT 60.836 55.000 0.00 0.00 35.26 4.69
2128 2196 2.492088 GGTTTCAAATACAGCTGGGACC 59.508 50.000 19.93 9.54 0.00 4.46
2209 2277 7.560368 CCTCTAACATGGATCTAACAAACTCT 58.440 38.462 0.00 0.00 0.00 3.24
2220 2288 5.611374 TCTAACAAACTCTGAAACCTGGAG 58.389 41.667 0.00 0.00 0.00 3.86
2315 2383 7.170658 GTGAGAAGATTTTCGAATAGAGGATGG 59.829 40.741 0.00 0.00 38.38 3.51
2425 2500 3.413846 TTTCAGAGCTCAGACTGCATT 57.586 42.857 17.77 0.00 34.57 3.56
2439 2514 6.883756 TCAGACTGCATTCCACACATATTAAA 59.116 34.615 0.00 0.00 0.00 1.52
2475 2552 4.098196 AGGAGGAATAACGCTTCTCTGTAC 59.902 45.833 0.00 0.00 0.00 2.90
2581 2661 7.934855 AATTTATCAGGCATACATCATCTCC 57.065 36.000 0.00 0.00 0.00 3.71
2582 2662 6.692849 TTTATCAGGCATACATCATCTCCT 57.307 37.500 0.00 0.00 0.00 3.69
2591 2671 7.615365 AGGCATACATCATCTCCTTTTTGTAAA 59.385 33.333 0.00 0.00 0.00 2.01
2592 2672 7.917505 GGCATACATCATCTCCTTTTTGTAAAG 59.082 37.037 0.00 0.00 40.38 1.85
2627 2709 5.827797 GGGATAGGAAATAGTGTGAATTGCA 59.172 40.000 0.00 0.00 0.00 4.08
2668 2750 5.892686 TGACATGCCATTCATTTTATCCTGA 59.107 36.000 0.00 0.00 31.79 3.86
2672 2754 6.795144 TGCCATTCATTTTATCCTGACAAT 57.205 33.333 0.00 0.00 0.00 2.71
2714 2808 7.823745 ACATGTGATTGTTCTACCTCTTTTT 57.176 32.000 0.00 0.00 0.00 1.94
2719 2815 8.792633 TGTGATTGTTCTACCTCTTTTTAATGG 58.207 33.333 0.00 0.00 0.00 3.16
2762 2858 6.341316 TCATAGCTAAATCTGTCTGGAACAC 58.659 40.000 0.00 0.00 33.24 3.32
2767 2863 3.485463 AATCTGTCTGGAACACGGAAA 57.515 42.857 0.00 0.00 35.91 3.13
2837 2934 6.088824 GCTGGAAGATGTTTATTTCACTGTG 58.911 40.000 0.17 0.17 34.07 3.66
2838 2935 6.012658 TGGAAGATGTTTATTTCACTGTGC 57.987 37.500 2.12 0.00 0.00 4.57
2845 2942 7.665559 AGATGTTTATTTCACTGTGCCTAAAGA 59.334 33.333 2.12 6.03 0.00 2.52
2871 2968 5.007682 TCCCATTTTGTAAGCTGTAGAACC 58.992 41.667 0.00 0.00 0.00 3.62
2872 2969 5.010282 CCCATTTTGTAAGCTGTAGAACCT 58.990 41.667 0.00 0.00 0.00 3.50
2873 2970 5.106157 CCCATTTTGTAAGCTGTAGAACCTG 60.106 44.000 0.00 0.00 0.00 4.00
2874 2971 5.705441 CCATTTTGTAAGCTGTAGAACCTGA 59.295 40.000 0.00 0.00 0.00 3.86
2875 2972 6.206634 CCATTTTGTAAGCTGTAGAACCTGAA 59.793 38.462 0.00 0.00 0.00 3.02
2876 2973 7.255451 CCATTTTGTAAGCTGTAGAACCTGAAA 60.255 37.037 0.00 0.00 0.00 2.69
2877 2974 7.633193 TTTTGTAAGCTGTAGAACCTGAAAA 57.367 32.000 0.00 0.00 0.00 2.29
2878 2975 7.633193 TTTGTAAGCTGTAGAACCTGAAAAA 57.367 32.000 0.00 0.00 0.00 1.94
2918 3135 1.065199 CAAGCTGGGATGTGAAGCCTA 60.065 52.381 0.00 0.00 37.68 3.93
2933 3150 1.747709 GCCTACTATCGGCGGAGATA 58.252 55.000 7.21 0.00 37.87 1.98
2954 3171 7.633789 AGATACATTCCTTTACATTCACCTGT 58.366 34.615 0.00 0.00 0.00 4.00
2980 3197 5.489792 TTTCTACTGCCTCTTTGACTCAT 57.510 39.130 0.00 0.00 0.00 2.90
2992 3209 7.575155 GCCTCTTTGACTCATAGGGTTTAAAAC 60.575 40.741 0.00 0.00 0.00 2.43
3008 3225 6.040504 GGTTTAAAACCCACATGGATAGGATC 59.959 42.308 0.00 0.00 46.12 3.36
3018 3235 5.936372 CACATGGATAGGATCTGGTTACATG 59.064 44.000 0.00 0.00 39.12 3.21
3033 3250 6.186957 TGGTTACATGTGCAAAATAGAGGAT 58.813 36.000 9.11 0.00 0.00 3.24
3041 3258 6.680810 TGTGCAAAATAGAGGATTGTGAAAG 58.319 36.000 0.00 0.00 35.00 2.62
3084 3301 6.703319 TGGTTGTTTGATTCGTAGGAATAGA 58.297 36.000 10.51 0.51 42.86 1.98
3134 3352 7.790823 TGGTCAAACTAAGGTTACAACTTAC 57.209 36.000 0.00 0.00 34.90 2.34
3179 3397 7.660030 ATATTATGCTACTTTTGGCCTTTGT 57.340 32.000 3.32 0.04 0.00 2.83
3180 3398 5.799827 TTATGCTACTTTTGGCCTTTGTT 57.200 34.783 3.32 0.00 0.00 2.83
3239 3459 3.692593 ACCGGATTGTAAAATTCCTTCGG 59.307 43.478 9.46 0.00 39.59 4.30
3250 3470 9.517868 TGTAAAATTCCTTCGGTTTTCCTATAA 57.482 29.630 0.00 0.00 37.95 0.98
3269 3491 9.635404 TCCTATAAAACTCAAACCAAAGAGAAA 57.365 29.630 0.00 0.00 35.83 2.52
3276 3498 6.729187 ACTCAAACCAAAGAGAAATCTTTCG 58.271 36.000 0.35 0.00 41.92 3.46
3278 3500 6.725246 TCAAACCAAAGAGAAATCTTTCGAC 58.275 36.000 0.35 0.00 41.92 4.20
3286 3508 6.793492 AGAGAAATCTTTCGACTTTTCCTG 57.207 37.500 0.00 0.00 41.92 3.86
3294 3516 2.833794 TCGACTTTTCCTGTGGTTCAG 58.166 47.619 0.00 0.00 43.27 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 227 0.820074 CAGCTACCTCGAGATCCCGT 60.820 60.000 15.71 5.17 0.00 5.28
256 272 0.476771 AAAAGGGGGAGAAAGCGTCA 59.523 50.000 0.00 0.00 0.00 4.35
460 487 4.142966 CCAAGTAGGTCGGTTCGAAATTTC 60.143 45.833 8.20 8.20 37.72 2.17
490 517 6.038714 GGCAAAAATTCAAGAGATCCGAGTAT 59.961 38.462 0.00 0.00 0.00 2.12
504 531 7.721402 ACTAACTACACATTGGCAAAAATTCA 58.279 30.769 3.01 0.00 0.00 2.57
551 595 1.691976 AGGACATGTGGTTTCGACTGA 59.308 47.619 1.15 0.00 0.00 3.41
557 601 3.578688 GATTTGCAGGACATGTGGTTTC 58.421 45.455 1.15 0.00 0.00 2.78
578 622 6.299703 AACTATGGTTGAAATGCAAACTGCG 61.300 40.000 0.00 0.00 44.68 5.18
610 654 5.242838 TGCGAAAAGGTTTCAAATCCTACAT 59.757 36.000 1.99 0.00 33.27 2.29
620 664 2.468831 GCAATGTGCGAAAAGGTTTCA 58.531 42.857 1.99 0.00 31.71 2.69
650 695 2.225068 ATCGGGTCTTGAACTATGCG 57.775 50.000 0.00 0.00 0.00 4.73
663 710 2.223829 CGCTCAGTTAGATGAATCGGGT 60.224 50.000 0.00 0.00 0.00 5.28
666 713 4.294232 ACATCGCTCAGTTAGATGAATCG 58.706 43.478 11.05 0.00 43.06 3.34
803 862 4.591321 AACAATATGGGGCTTCTTCAGA 57.409 40.909 0.00 0.00 0.00 3.27
826 885 8.208224 ACAAAATACTGATCATTCACCGGTATA 58.792 33.333 6.87 0.00 0.00 1.47
869 929 1.811778 TCCTTCCATCTCCAGGGATG 58.188 55.000 0.17 0.17 41.77 3.51
964 1026 4.540824 GAGATTGAACCTCAAAGTGTTGC 58.459 43.478 0.00 0.00 40.12 4.17
981 1043 6.998074 TCGGCATCACTAATTAATTGGAGATT 59.002 34.615 17.64 5.42 29.17 2.40
994 1056 3.197766 ACCTTCATTCTCGGCATCACTAA 59.802 43.478 0.00 0.00 0.00 2.24
1029 1091 4.002982 TGAATGTCAGCAACACTATGACC 58.997 43.478 2.42 0.00 41.75 4.02
1227 1292 0.671781 ATGACAGGAGCAGAACACGC 60.672 55.000 0.00 0.00 0.00 5.34
1239 1304 3.480470 AGACCACAACAGAAATGACAGG 58.520 45.455 0.00 0.00 0.00 4.00
1419 1485 2.168728 GAGGTACATCCCTGAGGTTGTC 59.831 54.545 7.50 1.69 43.63 3.18
1597 1663 1.398390 CCGAGATGCTACTTTTGGCAC 59.602 52.381 0.00 0.00 41.39 5.01
1896 1964 7.400339 TCCTTGTCTTGGTAACTGATAAGATCT 59.600 37.037 10.60 0.00 39.38 2.75
1981 2049 2.494918 CCTGAGGGCGTACCGAAG 59.505 66.667 0.00 0.00 46.96 3.79
1987 2055 1.982395 CACAGTCCCTGAGGGCGTA 60.982 63.158 14.20 0.00 45.21 4.42
2128 2196 1.097547 CGCCAACTATCCCAGCCAAG 61.098 60.000 0.00 0.00 0.00 3.61
2158 2226 2.511218 TGCAGCCTCCAGAATATTTCCT 59.489 45.455 0.00 0.00 0.00 3.36
2209 2277 3.711704 AGAAGACTGTTCTCCAGGTTTCA 59.288 43.478 0.00 0.00 46.06 2.69
2240 2308 9.871238 GACTGAACTAAAAATACAGAGGTATGA 57.129 33.333 0.00 0.00 40.09 2.15
2346 2415 0.908910 TTTTCTATCCTGCCTCGCCA 59.091 50.000 0.00 0.00 0.00 5.69
2449 2526 5.187186 ACAGAGAAGCGTTATTCCTCCTAAA 59.813 40.000 0.00 0.00 0.00 1.85
2464 2541 8.560374 AGAAAACACAATTTAGTACAGAGAAGC 58.440 33.333 0.00 0.00 0.00 3.86
2475 2552 8.526147 AGGATCATTCCAGAAAACACAATTTAG 58.474 33.333 0.00 0.00 45.30 1.85
2565 2645 5.513233 ACAAAAAGGAGATGATGTATGCCT 58.487 37.500 0.00 0.00 0.00 4.75
2581 2661 7.505258 TCCCCAGGAAAATTCTTTACAAAAAG 58.495 34.615 0.00 0.00 42.99 2.27
2582 2662 7.439108 TCCCCAGGAAAATTCTTTACAAAAA 57.561 32.000 0.00 0.00 0.00 1.94
2627 2709 3.051081 GTCATCCTGACTTCTTGCTGT 57.949 47.619 0.07 0.00 43.73 4.40
2701 2795 8.650143 AGCAATTCCATTAAAAAGAGGTAGAA 57.350 30.769 0.00 0.00 0.00 2.10
2734 2830 7.839680 TCCAGACAGATTTAGCTATGATACA 57.160 36.000 0.00 0.00 0.00 2.29
2753 2849 0.034896 GGAGCTTTCCGTGTTCCAGA 59.965 55.000 0.00 0.00 35.33 3.86
2762 2858 1.303643 AGCCAAAGGGAGCTTTCCG 60.304 57.895 0.00 0.00 35.22 4.30
2767 2863 0.326264 CTACACAGCCAAAGGGAGCT 59.674 55.000 0.00 0.00 40.89 4.09
2837 2934 6.460261 GCTTACAAAATGGGATCTCTTTAGGC 60.460 42.308 0.00 0.00 0.00 3.93
2838 2935 6.830838 AGCTTACAAAATGGGATCTCTTTAGG 59.169 38.462 0.00 0.00 0.00 2.69
2845 2942 6.313519 TCTACAGCTTACAAAATGGGATCT 57.686 37.500 0.00 0.00 0.00 2.75
2875 2972 1.147817 AGGGATGAGGGCACAGTTTTT 59.852 47.619 0.00 0.00 0.00 1.94
2876 2973 0.779997 AGGGATGAGGGCACAGTTTT 59.220 50.000 0.00 0.00 0.00 2.43
2877 2974 0.038744 CAGGGATGAGGGCACAGTTT 59.961 55.000 0.00 0.00 0.00 2.66
2878 2975 1.687612 CAGGGATGAGGGCACAGTT 59.312 57.895 0.00 0.00 0.00 3.16
2879 2976 2.304056 CCAGGGATGAGGGCACAGT 61.304 63.158 0.00 0.00 0.00 3.55
2880 2977 2.593978 CCAGGGATGAGGGCACAG 59.406 66.667 0.00 0.00 0.00 3.66
2918 3135 2.492484 GGAATGTATCTCCGCCGATAGT 59.508 50.000 0.00 0.00 0.00 2.12
2926 3143 6.202954 GGTGAATGTAAAGGAATGTATCTCCG 59.797 42.308 0.00 0.00 38.08 4.63
2933 3150 6.976934 AAACAGGTGAATGTAAAGGAATGT 57.023 33.333 0.00 0.00 31.70 2.71
2992 3209 2.342659 ACCAGATCCTATCCATGTGGG 58.657 52.381 0.00 0.00 38.70 4.61
3000 3217 4.960938 TGCACATGTAACCAGATCCTATC 58.039 43.478 0.00 0.00 0.00 2.08
3008 3225 5.647658 TCCTCTATTTTGCACATGTAACCAG 59.352 40.000 0.00 0.00 0.00 4.00
3018 3235 5.574443 GCTTTCACAATCCTCTATTTTGCAC 59.426 40.000 0.00 0.00 0.00 4.57
3033 3250 2.985809 GCACATTTATGCGCTTTCACAA 59.014 40.909 9.73 0.00 35.50 3.33
3055 3272 7.931578 TCCTACGAATCAAACAACCAATTAT 57.068 32.000 0.00 0.00 0.00 1.28
3108 3326 9.492973 GTAAGTTGTAACCTTAGTTTGACCATA 57.507 33.333 0.00 0.00 37.42 2.74
3118 3336 5.467735 ACCTTTGCGTAAGTTGTAACCTTAG 59.532 40.000 0.00 0.00 41.68 2.18
3123 3341 6.529463 TCTTACCTTTGCGTAAGTTGTAAC 57.471 37.500 8.02 0.00 43.74 2.50
3164 3382 3.949113 AGAACGAACAAAGGCCAAAAGTA 59.051 39.130 5.01 0.00 0.00 2.24
3174 3392 4.911610 CCTATGCACAAAGAACGAACAAAG 59.088 41.667 0.00 0.00 0.00 2.77
3178 3396 4.742438 TTCCTATGCACAAAGAACGAAC 57.258 40.909 0.00 0.00 0.00 3.95
3179 3397 4.759693 ACATTCCTATGCACAAAGAACGAA 59.240 37.500 0.00 0.00 35.03 3.85
3180 3398 4.323417 ACATTCCTATGCACAAAGAACGA 58.677 39.130 0.00 0.00 35.03 3.85
3215 3435 4.438200 CGAAGGAATTTTACAATCCGGTGG 60.438 45.833 0.00 0.00 0.00 4.61
3266 3488 5.008712 ACCACAGGAAAAGTCGAAAGATTTC 59.991 40.000 0.00 0.00 45.19 2.17
3269 3491 4.086706 ACCACAGGAAAAGTCGAAAGAT 57.913 40.909 0.00 0.00 45.19 2.40
3271 3493 3.625764 TGAACCACAGGAAAAGTCGAAAG 59.374 43.478 0.00 0.00 0.00 2.62
3272 3494 3.611970 TGAACCACAGGAAAAGTCGAAA 58.388 40.909 0.00 0.00 0.00 3.46
3286 3508 2.229792 TGATCCAAAGCACTGAACCAC 58.770 47.619 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.