Multiple sequence alignment - TraesCS1B01G341200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G341200 chr1B 100.000 3225 0 0 1 3225 569426713 569429937 0.000000e+00 5956.0
1 TraesCS1B01G341200 chr1B 96.702 2547 67 6 612 3143 460164087 460161543 0.000000e+00 4222.0
2 TraesCS1B01G341200 chr1B 95.251 2632 91 23 609 3225 544798313 544795701 0.000000e+00 4137.0
3 TraesCS1B01G341200 chr1B 95.992 2545 86 5 612 3143 94936277 94933736 0.000000e+00 4120.0
4 TraesCS1B01G341200 chr1B 95.589 2562 68 3 612 3131 668657476 668660034 0.000000e+00 4063.0
5 TraesCS1B01G341200 chr1B 90.854 820 40 21 2364 3177 364286470 364285680 0.000000e+00 1066.0
6 TraesCS1B01G341200 chr1B 95.556 45 1 1 3181 3225 94933726 94933683 1.610000e-08 71.3
7 TraesCS1B01G341200 chr1B 100.000 27 0 0 3151 3177 668660016 668660042 2.100000e-02 51.0
8 TraesCS1B01G341200 chr6B 96.721 2623 77 2 612 3225 661538893 661541515 0.000000e+00 4359.0
9 TraesCS1B01G341200 chr6B 94.913 688 32 2 2364 3048 40796463 40795776 0.000000e+00 1074.0
10 TraesCS1B01G341200 chr6B 95.556 45 1 1 3181 3225 230760978 230760935 1.610000e-08 71.3
11 TraesCS1B01G341200 chr2B 96.884 2535 73 6 612 3143 69351989 69354520 0.000000e+00 4239.0
12 TraesCS1B01G341200 chr2B 95.979 2611 86 11 606 3197 23131082 23133692 0.000000e+00 4222.0
13 TraesCS1B01G341200 chr2B 94.838 2538 94 13 612 3143 750454421 750451915 0.000000e+00 3927.0
14 TraesCS1B01G341200 chr2B 95.714 70 0 3 3062 3131 23133598 23133664 3.400000e-20 110.0
15 TraesCS1B01G341200 chr7B 96.885 2536 64 3 610 3131 41046985 41049519 0.000000e+00 4231.0
16 TraesCS1B01G341200 chr7B 91.882 271 22 0 184 454 695073028 695073298 2.350000e-101 379.0
17 TraesCS1B01G341200 chr5B 95.623 2559 70 2 611 3127 621306286 621303728 0.000000e+00 4067.0
18 TraesCS1B01G341200 chr5B 93.321 2665 113 18 612 3225 69031151 69033801 0.000000e+00 3875.0
19 TraesCS1B01G341200 chr5B 97.026 269 7 1 193 461 41272207 41271940 4.910000e-123 451.0
20 TraesCS1B01G341200 chr5B 92.989 271 17 2 184 454 312912446 312912178 8.390000e-106 394.0
21 TraesCS1B01G341200 chr3B 92.013 1515 91 6 1622 3108 470856760 470858272 0.000000e+00 2100.0
22 TraesCS1B01G341200 chr3B 92.279 272 20 1 183 454 29709723 29709453 5.050000e-103 385.0
23 TraesCS1B01G341200 chr5D 91.003 289 21 5 168 454 2748800 2749085 5.050000e-103 385.0
24 TraesCS1B01G341200 chr4B 92.000 275 20 2 184 457 66802669 66802942 5.050000e-103 385.0
25 TraesCS1B01G341200 chr4B 96.154 78 0 1 3103 3177 654071539 654071462 1.210000e-24 124.0
26 TraesCS1B01G341200 chr2D 91.756 279 20 3 184 462 54169415 54169140 5.050000e-103 385.0
27 TraesCS1B01G341200 chr7D 91.912 272 21 1 184 454 237412849 237412578 2.350000e-101 379.0
28 TraesCS1B01G341200 chr1D 91.912 272 21 1 184 455 207230709 207230439 2.350000e-101 379.0
29 TraesCS1B01G341200 chr1D 91.803 183 15 0 1 183 420712262 420712444 4.130000e-64 255.0
30 TraesCS1B01G341200 chr1D 94.969 159 6 1 455 611 420712445 420712603 6.910000e-62 248.0
31 TraesCS1B01G341200 chr1A 95.455 154 7 0 455 608 517184319 517184472 2.480000e-61 246.0
32 TraesCS1B01G341200 chr1A 91.329 173 15 0 11 183 517184146 517184318 1.500000e-58 237.0
33 TraesCS1B01G341200 chr6D 81.579 114 19 2 71 183 14223502 14223390 3.430000e-15 93.5
34 TraesCS1B01G341200 chr5A 95.556 45 1 1 3181 3225 647553858 647553901 1.610000e-08 71.3
35 TraesCS1B01G341200 chr5A 95.556 45 1 1 3181 3225 650153271 650153314 1.610000e-08 71.3
36 TraesCS1B01G341200 chr4A 95.556 45 1 1 3181 3225 604386639 604386596 1.610000e-08 71.3
37 TraesCS1B01G341200 chr2A 95.556 45 1 1 3181 3225 115132776 115132819 1.610000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G341200 chr1B 569426713 569429937 3224 False 5956.00 5956 100.0000 1 3225 1 chr1B.!!$F1 3224
1 TraesCS1B01G341200 chr1B 460161543 460164087 2544 True 4222.00 4222 96.7020 612 3143 1 chr1B.!!$R2 2531
2 TraesCS1B01G341200 chr1B 544795701 544798313 2612 True 4137.00 4137 95.2510 609 3225 1 chr1B.!!$R3 2616
3 TraesCS1B01G341200 chr1B 94933683 94936277 2594 True 2095.65 4120 95.7740 612 3225 2 chr1B.!!$R4 2613
4 TraesCS1B01G341200 chr1B 668657476 668660042 2566 False 2057.00 4063 97.7945 612 3177 2 chr1B.!!$F2 2565
5 TraesCS1B01G341200 chr1B 364285680 364286470 790 True 1066.00 1066 90.8540 2364 3177 1 chr1B.!!$R1 813
6 TraesCS1B01G341200 chr6B 661538893 661541515 2622 False 4359.00 4359 96.7210 612 3225 1 chr6B.!!$F1 2613
7 TraesCS1B01G341200 chr6B 40795776 40796463 687 True 1074.00 1074 94.9130 2364 3048 1 chr6B.!!$R1 684
8 TraesCS1B01G341200 chr2B 69351989 69354520 2531 False 4239.00 4239 96.8840 612 3143 1 chr2B.!!$F1 2531
9 TraesCS1B01G341200 chr2B 750451915 750454421 2506 True 3927.00 3927 94.8380 612 3143 1 chr2B.!!$R1 2531
10 TraesCS1B01G341200 chr2B 23131082 23133692 2610 False 2166.00 4222 95.8465 606 3197 2 chr2B.!!$F2 2591
11 TraesCS1B01G341200 chr7B 41046985 41049519 2534 False 4231.00 4231 96.8850 610 3131 1 chr7B.!!$F1 2521
12 TraesCS1B01G341200 chr5B 621303728 621306286 2558 True 4067.00 4067 95.6230 611 3127 1 chr5B.!!$R3 2516
13 TraesCS1B01G341200 chr5B 69031151 69033801 2650 False 3875.00 3875 93.3210 612 3225 1 chr5B.!!$F1 2613
14 TraesCS1B01G341200 chr3B 470856760 470858272 1512 False 2100.00 2100 92.0130 1622 3108 1 chr3B.!!$F1 1486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.101579 TCGAACTCAGACACGTTGCA 59.898 50.0 0.0 0.0 0.00 4.08 F
238 239 0.103937 CCGAACTGATGGAGAGAGGC 59.896 60.0 0.0 0.0 0.00 4.70 F
240 241 0.103937 GAACTGATGGAGAGAGGCGG 59.896 60.0 0.0 0.0 0.00 6.13 F
409 410 0.106819 ATGCTCCAGCCAACTCATCC 60.107 55.0 0.0 0.0 41.18 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2012 1.089920 CCAACATGGCTTTCTCCTCG 58.910 55.000 0.0 0.00 0.00 4.63 R
2026 2060 3.314553 CAAAATGCACCTCTGCTCTTTG 58.685 45.455 0.0 1.14 44.57 2.77 R
2186 2220 4.460731 GGCCTTGATTTGCTCTAACTTCTT 59.539 41.667 0.0 0.00 0.00 2.52 R
2418 2452 9.003658 CCATTTCAACTACTTAATAGCATAGGG 57.996 37.037 0.0 0.00 33.73 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.277969 CTAGCTACGGTCTCGAACTCA 58.722 52.381 0.00 0.00 40.11 3.41
21 22 1.088306 AGCTACGGTCTCGAACTCAG 58.912 55.000 0.00 0.00 40.11 3.35
22 23 1.085091 GCTACGGTCTCGAACTCAGA 58.915 55.000 0.00 0.00 40.11 3.27
23 24 1.202054 GCTACGGTCTCGAACTCAGAC 60.202 57.143 0.00 0.00 39.78 3.51
24 25 2.074576 CTACGGTCTCGAACTCAGACA 58.925 52.381 4.41 0.00 41.94 3.41
25 26 0.592148 ACGGTCTCGAACTCAGACAC 59.408 55.000 4.41 0.00 41.94 3.67
26 27 0.452950 CGGTCTCGAACTCAGACACG 60.453 60.000 4.41 2.39 41.94 4.49
27 28 0.592148 GGTCTCGAACTCAGACACGT 59.408 55.000 4.41 0.00 41.94 4.49
28 29 1.001597 GGTCTCGAACTCAGACACGTT 60.002 52.381 4.41 0.00 41.94 3.99
29 30 2.044860 GTCTCGAACTCAGACACGTTG 58.955 52.381 0.00 0.00 40.18 4.10
30 31 0.778815 CTCGAACTCAGACACGTTGC 59.221 55.000 0.00 0.00 0.00 4.17
31 32 0.101579 TCGAACTCAGACACGTTGCA 59.898 50.000 0.00 0.00 0.00 4.08
32 33 0.229753 CGAACTCAGACACGTTGCAC 59.770 55.000 0.00 0.00 0.00 4.57
33 34 0.582005 GAACTCAGACACGTTGCACC 59.418 55.000 0.00 0.00 0.00 5.01
34 35 1.151777 AACTCAGACACGTTGCACCG 61.152 55.000 0.62 0.62 0.00 4.94
35 36 2.943345 CTCAGACACGTTGCACCGC 61.943 63.158 2.56 0.00 0.00 5.68
36 37 3.268603 CAGACACGTTGCACCGCA 61.269 61.111 2.56 0.00 36.47 5.69
37 38 2.512745 AGACACGTTGCACCGCAA 60.513 55.556 2.56 0.00 46.80 4.85
44 45 2.650196 TTGCACCGCAAAGGCATC 59.350 55.556 0.00 0.00 45.96 3.91
45 46 3.266230 TTGCACCGCAAAGGCATCG 62.266 57.895 0.00 0.00 45.96 3.84
47 48 3.434319 CACCGCAAAGGCATCGCT 61.434 61.111 0.00 0.00 46.52 4.93
48 49 3.434319 ACCGCAAAGGCATCGCTG 61.434 61.111 0.00 0.00 46.52 5.18
49 50 4.183686 CCGCAAAGGCATCGCTGG 62.184 66.667 0.00 0.00 41.24 4.85
50 51 3.434319 CGCAAAGGCATCGCTGGT 61.434 61.111 0.00 0.00 41.24 4.00
51 52 2.106074 CGCAAAGGCATCGCTGGTA 61.106 57.895 0.00 0.00 41.24 3.25
52 53 1.429423 GCAAAGGCATCGCTGGTAC 59.571 57.895 0.00 0.00 40.72 3.34
53 54 1.715585 CAAAGGCATCGCTGGTACG 59.284 57.895 0.00 0.00 0.00 3.67
54 55 2.106683 AAAGGCATCGCTGGTACGC 61.107 57.895 0.00 0.00 0.00 4.42
55 56 4.530857 AGGCATCGCTGGTACGCC 62.531 66.667 0.00 0.00 43.31 5.68
63 64 2.047655 CTGGTACGCCGGCAGAAA 60.048 61.111 28.98 4.90 37.67 2.52
64 65 1.669760 CTGGTACGCCGGCAGAAAA 60.670 57.895 28.98 7.65 37.67 2.29
65 66 1.227883 TGGTACGCCGGCAGAAAAA 60.228 52.632 28.98 3.63 37.67 1.94
66 67 1.208358 GGTACGCCGGCAGAAAAAC 59.792 57.895 28.98 13.67 0.00 2.43
67 68 1.154543 GTACGCCGGCAGAAAAACG 60.155 57.895 28.98 9.93 0.00 3.60
68 69 2.957052 TACGCCGGCAGAAAAACGC 61.957 57.895 28.98 0.00 0.00 4.84
70 71 4.322385 GCCGGCAGAAAAACGCGT 62.322 61.111 24.80 5.58 0.00 6.01
71 72 2.426752 CCGGCAGAAAAACGCGTG 60.427 61.111 14.98 0.00 0.00 5.34
72 73 3.091022 CGGCAGAAAAACGCGTGC 61.091 61.111 14.98 11.06 35.07 5.34
73 74 2.025441 GGCAGAAAAACGCGTGCA 59.975 55.556 14.98 0.00 37.68 4.57
74 75 2.292916 GGCAGAAAAACGCGTGCAC 61.293 57.895 14.98 6.82 37.68 4.57
75 76 2.626151 GCAGAAAAACGCGTGCACG 61.626 57.895 34.01 34.01 43.27 5.34
108 109 3.770040 TCACCGGCCGTGATGGAG 61.770 66.667 26.12 9.27 46.80 3.86
109 110 4.838152 CACCGGCCGTGATGGAGG 62.838 72.222 26.12 8.44 46.20 4.30
117 118 4.554036 GTGATGGAGGGGGCGCTC 62.554 72.222 7.64 1.18 0.00 5.03
131 132 3.798758 GCTCCCTGCGGATATCCT 58.201 61.111 19.61 0.00 37.60 3.24
132 133 2.977578 GCTCCCTGCGGATATCCTA 58.022 57.895 19.61 7.69 37.60 2.94
133 134 0.533032 GCTCCCTGCGGATATCCTAC 59.467 60.000 19.61 11.84 37.60 3.18
134 135 1.893210 GCTCCCTGCGGATATCCTACT 60.893 57.143 19.61 0.00 37.60 2.57
135 136 2.530701 CTCCCTGCGGATATCCTACTT 58.469 52.381 19.61 0.00 37.60 2.24
136 137 2.232452 CTCCCTGCGGATATCCTACTTG 59.768 54.545 19.61 4.78 37.60 3.16
137 138 2.158370 TCCCTGCGGATATCCTACTTGA 60.158 50.000 19.61 7.93 31.13 3.02
138 139 2.232452 CCCTGCGGATATCCTACTTGAG 59.768 54.545 19.61 3.33 0.00 3.02
139 140 3.157881 CCTGCGGATATCCTACTTGAGA 58.842 50.000 19.61 0.00 0.00 3.27
140 141 3.766591 CCTGCGGATATCCTACTTGAGAT 59.233 47.826 19.61 0.00 0.00 2.75
141 142 4.142271 CCTGCGGATATCCTACTTGAGATC 60.142 50.000 19.61 0.00 33.28 2.75
142 143 3.440522 TGCGGATATCCTACTTGAGATCG 59.559 47.826 19.61 3.01 34.53 3.69
143 144 3.440872 GCGGATATCCTACTTGAGATCGT 59.559 47.826 19.61 0.00 34.53 3.73
144 145 4.437659 GCGGATATCCTACTTGAGATCGTC 60.438 50.000 19.61 0.00 34.53 4.20
145 146 4.201734 CGGATATCCTACTTGAGATCGTCG 60.202 50.000 19.61 0.00 34.53 5.12
146 147 4.437659 GGATATCCTACTTGAGATCGTCGC 60.438 50.000 14.97 0.00 34.53 5.19
147 148 0.656259 TCCTACTTGAGATCGTCGCG 59.344 55.000 0.00 0.00 0.00 5.87
148 149 0.930742 CCTACTTGAGATCGTCGCGC 60.931 60.000 0.00 0.00 0.00 6.86
149 150 1.256284 CTACTTGAGATCGTCGCGCG 61.256 60.000 26.76 26.76 43.01 6.86
150 151 3.965701 CTTGAGATCGTCGCGCGC 61.966 66.667 27.95 23.91 41.07 6.86
151 152 4.476410 TTGAGATCGTCGCGCGCT 62.476 61.111 30.48 16.57 41.07 5.92
152 153 4.888741 TGAGATCGTCGCGCGCTC 62.889 66.667 30.48 24.46 41.07 5.03
167 168 3.461773 CTCCGACATCCGCACCCT 61.462 66.667 0.00 0.00 36.84 4.34
168 169 3.432051 CTCCGACATCCGCACCCTC 62.432 68.421 0.00 0.00 36.84 4.30
169 170 3.770040 CCGACATCCGCACCCTCA 61.770 66.667 0.00 0.00 36.84 3.86
170 171 2.501128 CGACATCCGCACCCTCAT 59.499 61.111 0.00 0.00 0.00 2.90
171 172 1.592669 CGACATCCGCACCCTCATC 60.593 63.158 0.00 0.00 0.00 2.92
172 173 1.227674 GACATCCGCACCCTCATCC 60.228 63.158 0.00 0.00 0.00 3.51
173 174 2.280389 CATCCGCACCCTCATCCG 60.280 66.667 0.00 0.00 0.00 4.18
174 175 4.241555 ATCCGCACCCTCATCCGC 62.242 66.667 0.00 0.00 0.00 5.54
186 187 4.609018 ATCCGCTGCGCCGCTATT 62.609 61.111 21.59 2.96 0.00 1.73
189 190 3.563088 CGCTGCGCCGCTATTGAA 61.563 61.111 21.59 0.00 0.00 2.69
190 191 2.885676 CGCTGCGCCGCTATTGAAT 61.886 57.895 21.59 0.00 0.00 2.57
191 192 1.356624 GCTGCGCCGCTATTGAATT 59.643 52.632 17.16 0.00 0.00 2.17
192 193 0.658536 GCTGCGCCGCTATTGAATTC 60.659 55.000 17.16 0.00 0.00 2.17
193 194 0.657312 CTGCGCCGCTATTGAATTCA 59.343 50.000 11.67 3.38 0.00 2.57
194 195 1.265095 CTGCGCCGCTATTGAATTCAT 59.735 47.619 11.67 2.50 0.00 2.57
195 196 1.002576 TGCGCCGCTATTGAATTCATG 60.003 47.619 11.67 4.27 0.00 3.07
196 197 1.678360 CGCCGCTATTGAATTCATGC 58.322 50.000 9.40 12.73 0.00 4.06
197 198 1.265095 CGCCGCTATTGAATTCATGCT 59.735 47.619 9.40 0.08 0.00 3.79
198 199 2.663879 CGCCGCTATTGAATTCATGCTC 60.664 50.000 9.40 7.90 0.00 4.26
199 200 2.351157 GCCGCTATTGAATTCATGCTCC 60.351 50.000 9.40 4.77 0.00 4.70
200 201 2.880268 CCGCTATTGAATTCATGCTCCA 59.120 45.455 9.40 0.00 0.00 3.86
201 202 3.058432 CCGCTATTGAATTCATGCTCCAG 60.058 47.826 9.40 2.16 0.00 3.86
202 203 3.608707 CGCTATTGAATTCATGCTCCAGC 60.609 47.826 9.40 10.30 42.50 4.85
203 204 3.305199 GCTATTGAATTCATGCTCCAGCC 60.305 47.826 9.40 0.00 41.18 4.85
204 205 2.219080 TTGAATTCATGCTCCAGCCA 57.781 45.000 9.40 0.00 41.18 4.75
205 206 2.219080 TGAATTCATGCTCCAGCCAA 57.781 45.000 3.38 0.00 41.18 4.52
206 207 1.820519 TGAATTCATGCTCCAGCCAAC 59.179 47.619 3.38 0.00 41.18 3.77
207 208 2.097825 GAATTCATGCTCCAGCCAACT 58.902 47.619 0.00 0.00 41.18 3.16
208 209 1.760192 ATTCATGCTCCAGCCAACTC 58.240 50.000 0.00 0.00 41.18 3.01
209 210 0.401356 TTCATGCTCCAGCCAACTCA 59.599 50.000 0.00 0.00 41.18 3.41
210 211 0.622136 TCATGCTCCAGCCAACTCAT 59.378 50.000 0.00 0.00 41.18 2.90
211 212 1.022735 CATGCTCCAGCCAACTCATC 58.977 55.000 0.00 0.00 41.18 2.92
212 213 0.106819 ATGCTCCAGCCAACTCATCC 60.107 55.000 0.00 0.00 41.18 3.51
213 214 1.300963 GCTCCAGCCAACTCATCCA 59.699 57.895 0.00 0.00 34.31 3.41
214 215 0.322816 GCTCCAGCCAACTCATCCAA 60.323 55.000 0.00 0.00 34.31 3.53
215 216 1.887956 GCTCCAGCCAACTCATCCAAA 60.888 52.381 0.00 0.00 34.31 3.28
216 217 2.517959 CTCCAGCCAACTCATCCAAAA 58.482 47.619 0.00 0.00 0.00 2.44
217 218 2.490903 CTCCAGCCAACTCATCCAAAAG 59.509 50.000 0.00 0.00 0.00 2.27
218 219 2.158475 TCCAGCCAACTCATCCAAAAGT 60.158 45.455 0.00 0.00 0.00 2.66
219 220 2.229784 CCAGCCAACTCATCCAAAAGTC 59.770 50.000 0.00 0.00 0.00 3.01
220 221 2.229784 CAGCCAACTCATCCAAAAGTCC 59.770 50.000 0.00 0.00 0.00 3.85
221 222 1.200020 GCCAACTCATCCAAAAGTCCG 59.800 52.381 0.00 0.00 0.00 4.79
222 223 2.778299 CCAACTCATCCAAAAGTCCGA 58.222 47.619 0.00 0.00 0.00 4.55
223 224 3.146066 CCAACTCATCCAAAAGTCCGAA 58.854 45.455 0.00 0.00 0.00 4.30
224 225 3.058224 CCAACTCATCCAAAAGTCCGAAC 60.058 47.826 0.00 0.00 0.00 3.95
225 226 3.771577 ACTCATCCAAAAGTCCGAACT 57.228 42.857 0.00 0.00 37.32 3.01
226 227 3.403038 ACTCATCCAAAAGTCCGAACTG 58.597 45.455 0.00 0.00 35.36 3.16
227 228 3.071023 ACTCATCCAAAAGTCCGAACTGA 59.929 43.478 0.00 0.00 35.36 3.41
228 229 4.256920 CTCATCCAAAAGTCCGAACTGAT 58.743 43.478 0.00 0.00 35.36 2.90
229 230 4.002982 TCATCCAAAAGTCCGAACTGATG 58.997 43.478 0.00 0.00 35.25 3.07
230 231 2.778299 TCCAAAAGTCCGAACTGATGG 58.222 47.619 0.24 0.24 40.74 3.51
231 232 2.370519 TCCAAAAGTCCGAACTGATGGA 59.629 45.455 4.92 4.92 43.51 3.41
232 233 2.744202 CCAAAAGTCCGAACTGATGGAG 59.256 50.000 0.36 0.00 41.39 3.86
233 234 3.557054 CCAAAAGTCCGAACTGATGGAGA 60.557 47.826 0.36 0.00 41.39 3.71
234 235 3.601443 AAAGTCCGAACTGATGGAGAG 57.399 47.619 0.00 0.00 35.36 3.20
235 236 2.516227 AGTCCGAACTGATGGAGAGA 57.484 50.000 0.00 0.00 34.21 3.10
236 237 2.374184 AGTCCGAACTGATGGAGAGAG 58.626 52.381 0.00 0.00 34.21 3.20
237 238 1.407258 GTCCGAACTGATGGAGAGAGG 59.593 57.143 0.00 0.00 34.21 3.69
238 239 0.103937 CCGAACTGATGGAGAGAGGC 59.896 60.000 0.00 0.00 0.00 4.70
239 240 0.248825 CGAACTGATGGAGAGAGGCG 60.249 60.000 0.00 0.00 0.00 5.52
240 241 0.103937 GAACTGATGGAGAGAGGCGG 59.896 60.000 0.00 0.00 0.00 6.13
241 242 1.333636 AACTGATGGAGAGAGGCGGG 61.334 60.000 0.00 0.00 0.00 6.13
242 243 3.157252 TGATGGAGAGAGGCGGGC 61.157 66.667 0.00 0.00 0.00 6.13
243 244 3.157252 GATGGAGAGAGGCGGGCA 61.157 66.667 3.78 0.00 0.00 5.36
244 245 2.688666 ATGGAGAGAGGCGGGCAA 60.689 61.111 3.78 0.00 0.00 4.52
245 246 2.049627 GATGGAGAGAGGCGGGCAAT 62.050 60.000 3.78 0.00 0.00 3.56
246 247 0.764369 ATGGAGAGAGGCGGGCAATA 60.764 55.000 3.78 0.00 0.00 1.90
247 248 0.764369 TGGAGAGAGGCGGGCAATAT 60.764 55.000 3.78 0.00 0.00 1.28
248 249 1.267121 GGAGAGAGGCGGGCAATATA 58.733 55.000 3.78 0.00 0.00 0.86
249 250 1.066787 GGAGAGAGGCGGGCAATATAC 60.067 57.143 3.78 0.00 0.00 1.47
250 251 1.896465 GAGAGAGGCGGGCAATATACT 59.104 52.381 3.78 0.00 0.00 2.12
251 252 2.300437 GAGAGAGGCGGGCAATATACTT 59.700 50.000 3.78 0.00 0.00 2.24
252 253 2.300437 AGAGAGGCGGGCAATATACTTC 59.700 50.000 3.78 0.00 0.00 3.01
253 254 2.037251 GAGAGGCGGGCAATATACTTCA 59.963 50.000 3.78 0.00 0.00 3.02
254 255 2.438021 AGAGGCGGGCAATATACTTCAA 59.562 45.455 3.78 0.00 0.00 2.69
255 256 2.548480 GAGGCGGGCAATATACTTCAAC 59.452 50.000 3.78 0.00 0.00 3.18
256 257 2.092646 AGGCGGGCAATATACTTCAACA 60.093 45.455 3.78 0.00 0.00 3.33
257 258 2.032924 GGCGGGCAATATACTTCAACAC 59.967 50.000 0.00 0.00 0.00 3.32
258 259 2.032924 GCGGGCAATATACTTCAACACC 59.967 50.000 0.00 0.00 0.00 4.16
259 260 2.616842 CGGGCAATATACTTCAACACCC 59.383 50.000 0.00 0.00 0.00 4.61
260 261 2.956333 GGGCAATATACTTCAACACCCC 59.044 50.000 0.00 0.00 0.00 4.95
261 262 2.956333 GGCAATATACTTCAACACCCCC 59.044 50.000 0.00 0.00 0.00 5.40
276 277 2.042843 CCCCCTCACGTCTAGGCT 60.043 66.667 7.81 0.00 32.34 4.58
277 278 1.686110 CCCCCTCACGTCTAGGCTT 60.686 63.158 7.81 0.00 32.34 4.35
278 279 0.396695 CCCCCTCACGTCTAGGCTTA 60.397 60.000 7.81 0.00 32.34 3.09
279 280 1.481871 CCCCTCACGTCTAGGCTTAA 58.518 55.000 7.81 0.00 32.34 1.85
280 281 2.040178 CCCCTCACGTCTAGGCTTAAT 58.960 52.381 7.81 0.00 32.34 1.40
281 282 2.434702 CCCCTCACGTCTAGGCTTAATT 59.565 50.000 7.81 0.00 32.34 1.40
282 283 3.640029 CCCCTCACGTCTAGGCTTAATTA 59.360 47.826 7.81 0.00 32.34 1.40
283 284 4.262079 CCCCTCACGTCTAGGCTTAATTAG 60.262 50.000 7.81 0.00 32.34 1.73
299 300 8.614469 GCTTAATTAGCTCTTAGATGTGGAAT 57.386 34.615 0.00 0.00 46.77 3.01
300 301 9.061435 GCTTAATTAGCTCTTAGATGTGGAATT 57.939 33.333 0.00 0.00 46.77 2.17
309 310 9.103861 GCTCTTAGATGTGGAATTTATATAGGC 57.896 37.037 0.00 0.00 0.00 3.93
310 311 9.606631 CTCTTAGATGTGGAATTTATATAGGCC 57.393 37.037 0.00 0.00 0.00 5.19
311 312 8.258007 TCTTAGATGTGGAATTTATATAGGCCG 58.742 37.037 0.00 0.00 0.00 6.13
312 313 5.186198 AGATGTGGAATTTATATAGGCCGC 58.814 41.667 0.00 0.00 0.00 6.53
313 314 4.359434 TGTGGAATTTATATAGGCCGCA 57.641 40.909 0.00 0.00 33.93 5.69
314 315 4.323417 TGTGGAATTTATATAGGCCGCAG 58.677 43.478 0.00 0.00 32.68 5.18
315 316 4.041075 TGTGGAATTTATATAGGCCGCAGA 59.959 41.667 0.00 0.00 32.68 4.26
316 317 5.001232 GTGGAATTTATATAGGCCGCAGAA 58.999 41.667 0.00 0.00 0.00 3.02
317 318 5.648092 GTGGAATTTATATAGGCCGCAGAAT 59.352 40.000 0.00 0.00 0.00 2.40
318 319 5.880332 TGGAATTTATATAGGCCGCAGAATC 59.120 40.000 0.00 0.00 0.00 2.52
319 320 5.297029 GGAATTTATATAGGCCGCAGAATCC 59.703 44.000 0.00 0.00 0.00 3.01
320 321 5.700402 ATTTATATAGGCCGCAGAATCCT 57.300 39.130 0.00 0.00 0.00 3.24
321 322 5.499004 TTTATATAGGCCGCAGAATCCTT 57.501 39.130 0.00 0.00 0.00 3.36
322 323 5.499004 TTATATAGGCCGCAGAATCCTTT 57.501 39.130 0.00 0.00 0.00 3.11
323 324 2.736670 ATAGGCCGCAGAATCCTTTT 57.263 45.000 0.00 0.00 0.00 2.27
324 325 2.507407 TAGGCCGCAGAATCCTTTTT 57.493 45.000 0.00 0.00 0.00 1.94
351 352 2.594303 TGCGTTGGCAGGGTCTTG 60.594 61.111 0.00 0.00 46.21 3.02
352 353 2.281484 GCGTTGGCAGGGTCTTGA 60.281 61.111 0.00 0.00 39.62 3.02
353 354 1.896660 GCGTTGGCAGGGTCTTGAA 60.897 57.895 0.00 0.00 39.62 2.69
354 355 1.949257 CGTTGGCAGGGTCTTGAAC 59.051 57.895 0.00 0.00 0.00 3.18
355 356 0.535102 CGTTGGCAGGGTCTTGAACT 60.535 55.000 0.00 0.00 0.00 3.01
356 357 1.239347 GTTGGCAGGGTCTTGAACTC 58.761 55.000 0.00 0.00 0.00 3.01
357 358 0.843309 TTGGCAGGGTCTTGAACTCA 59.157 50.000 0.00 0.00 0.00 3.41
358 359 0.843309 TGGCAGGGTCTTGAACTCAA 59.157 50.000 0.00 0.00 0.00 3.02
374 375 4.541213 AAGACCTCTTGGCTCGGA 57.459 55.556 0.00 0.00 34.38 4.55
375 376 2.998493 AAGACCTCTTGGCTCGGAT 58.002 52.632 0.00 0.00 34.38 4.18
376 377 2.160721 AAGACCTCTTGGCTCGGATA 57.839 50.000 0.00 0.00 34.38 2.59
377 378 1.404843 AGACCTCTTGGCTCGGATAC 58.595 55.000 0.00 0.00 36.63 2.24
378 379 0.389757 GACCTCTTGGCTCGGATACC 59.610 60.000 0.00 0.00 36.63 2.73
379 380 0.325296 ACCTCTTGGCTCGGATACCA 60.325 55.000 0.00 0.00 36.63 3.25
380 381 1.051812 CCTCTTGGCTCGGATACCAT 58.948 55.000 1.20 0.00 35.42 3.55
381 382 2.248248 CCTCTTGGCTCGGATACCATA 58.752 52.381 1.20 0.00 35.42 2.74
382 383 2.834549 CCTCTTGGCTCGGATACCATAT 59.165 50.000 1.20 0.00 35.42 1.78
383 384 3.261897 CCTCTTGGCTCGGATACCATATT 59.738 47.826 1.20 0.00 35.42 1.28
384 385 4.248859 CTCTTGGCTCGGATACCATATTG 58.751 47.826 1.20 0.00 35.42 1.90
385 386 3.901222 TCTTGGCTCGGATACCATATTGA 59.099 43.478 1.20 0.00 35.42 2.57
386 387 4.346709 TCTTGGCTCGGATACCATATTGAA 59.653 41.667 1.20 0.00 35.42 2.69
387 388 4.908601 TGGCTCGGATACCATATTGAAT 57.091 40.909 0.00 0.00 0.00 2.57
388 389 5.241403 TGGCTCGGATACCATATTGAATT 57.759 39.130 0.00 0.00 0.00 2.17
389 390 5.245531 TGGCTCGGATACCATATTGAATTC 58.754 41.667 0.00 0.00 0.00 2.17
390 391 5.221823 TGGCTCGGATACCATATTGAATTCA 60.222 40.000 3.38 3.38 0.00 2.57
391 392 5.882557 GGCTCGGATACCATATTGAATTCAT 59.117 40.000 9.40 2.50 0.00 2.57
392 393 6.183360 GGCTCGGATACCATATTGAATTCATG 60.183 42.308 9.40 4.74 0.00 3.07
393 394 6.676456 GCTCGGATACCATATTGAATTCATGC 60.676 42.308 9.40 0.00 0.00 4.06
394 395 6.475504 TCGGATACCATATTGAATTCATGCT 58.524 36.000 9.40 0.08 0.00 3.79
395 396 6.595326 TCGGATACCATATTGAATTCATGCTC 59.405 38.462 9.40 2.56 0.00 4.26
396 397 6.183360 CGGATACCATATTGAATTCATGCTCC 60.183 42.308 9.40 9.57 0.00 4.70
397 398 6.660521 GGATACCATATTGAATTCATGCTCCA 59.339 38.462 9.40 0.00 0.00 3.86
398 399 7.148120 GGATACCATATTGAATTCATGCTCCAG 60.148 40.741 9.40 0.00 0.00 3.86
399 400 4.280174 ACCATATTGAATTCATGCTCCAGC 59.720 41.667 9.40 0.00 42.50 4.85
400 401 4.321750 CCATATTGAATTCATGCTCCAGCC 60.322 45.833 9.40 0.00 41.18 4.85
401 402 2.219080 TTGAATTCATGCTCCAGCCA 57.781 45.000 9.40 0.00 41.18 4.75
402 403 2.219080 TGAATTCATGCTCCAGCCAA 57.781 45.000 3.38 0.00 41.18 4.52
403 404 1.820519 TGAATTCATGCTCCAGCCAAC 59.179 47.619 3.38 0.00 41.18 3.77
404 405 2.097825 GAATTCATGCTCCAGCCAACT 58.902 47.619 0.00 0.00 41.18 3.16
405 406 1.760192 ATTCATGCTCCAGCCAACTC 58.240 50.000 0.00 0.00 41.18 3.01
406 407 0.401356 TTCATGCTCCAGCCAACTCA 59.599 50.000 0.00 0.00 41.18 3.41
407 408 0.622136 TCATGCTCCAGCCAACTCAT 59.378 50.000 0.00 0.00 41.18 2.90
408 409 1.022735 CATGCTCCAGCCAACTCATC 58.977 55.000 0.00 0.00 41.18 2.92
409 410 0.106819 ATGCTCCAGCCAACTCATCC 60.107 55.000 0.00 0.00 41.18 3.51
410 411 1.300963 GCTCCAGCCAACTCATCCA 59.699 57.895 0.00 0.00 34.31 3.41
411 412 0.322816 GCTCCAGCCAACTCATCCAA 60.323 55.000 0.00 0.00 34.31 3.53
412 413 1.887956 GCTCCAGCCAACTCATCCAAA 60.888 52.381 0.00 0.00 34.31 3.28
413 414 2.517959 CTCCAGCCAACTCATCCAAAA 58.482 47.619 0.00 0.00 0.00 2.44
414 415 2.490903 CTCCAGCCAACTCATCCAAAAG 59.509 50.000 0.00 0.00 0.00 2.27
415 416 2.158475 TCCAGCCAACTCATCCAAAAGT 60.158 45.455 0.00 0.00 0.00 2.66
416 417 2.229784 CCAGCCAACTCATCCAAAAGTC 59.770 50.000 0.00 0.00 0.00 3.01
417 418 2.229784 CAGCCAACTCATCCAAAAGTCC 59.770 50.000 0.00 0.00 0.00 3.85
418 419 2.158475 AGCCAACTCATCCAAAAGTCCA 60.158 45.455 0.00 0.00 0.00 4.02
419 420 2.627699 GCCAACTCATCCAAAAGTCCAA 59.372 45.455 0.00 0.00 0.00 3.53
420 421 3.069443 GCCAACTCATCCAAAAGTCCAAA 59.931 43.478 0.00 0.00 0.00 3.28
421 422 4.620982 CCAACTCATCCAAAAGTCCAAAC 58.379 43.478 0.00 0.00 0.00 2.93
422 423 4.342092 CCAACTCATCCAAAAGTCCAAACT 59.658 41.667 0.00 0.00 37.32 2.66
423 424 5.284079 CAACTCATCCAAAAGTCCAAACTG 58.716 41.667 0.00 0.00 35.36 3.16
424 425 4.792068 ACTCATCCAAAAGTCCAAACTGA 58.208 39.130 0.00 0.00 35.36 3.41
425 426 5.388654 ACTCATCCAAAAGTCCAAACTGAT 58.611 37.500 0.00 0.00 35.36 2.90
426 427 5.242393 ACTCATCCAAAAGTCCAAACTGATG 59.758 40.000 0.00 0.00 35.25 3.07
427 428 4.523943 TCATCCAAAAGTCCAAACTGATGG 59.476 41.667 0.00 4.37 40.74 3.51
428 429 4.523943 CATCCAAAAGTCCAAACTGATGGA 59.476 41.667 12.33 12.33 46.68 3.41
435 436 1.556911 TCCAAACTGATGGAGAGAGGC 59.443 52.381 3.42 0.00 44.52 4.70
436 437 1.649664 CAAACTGATGGAGAGAGGCG 58.350 55.000 0.00 0.00 0.00 5.52
437 438 0.539051 AAACTGATGGAGAGAGGCGG 59.461 55.000 0.00 0.00 0.00 6.13
438 439 1.333636 AACTGATGGAGAGAGGCGGG 61.334 60.000 0.00 0.00 0.00 6.13
439 440 3.157252 TGATGGAGAGAGGCGGGC 61.157 66.667 0.00 0.00 0.00 6.13
440 441 3.157252 GATGGAGAGAGGCGGGCA 61.157 66.667 3.78 0.00 0.00 5.36
441 442 2.688666 ATGGAGAGAGGCGGGCAA 60.689 61.111 3.78 0.00 0.00 4.52
442 443 2.049627 GATGGAGAGAGGCGGGCAAT 62.050 60.000 3.78 0.00 0.00 3.56
443 444 0.764369 ATGGAGAGAGGCGGGCAATA 60.764 55.000 3.78 0.00 0.00 1.90
444 445 0.764369 TGGAGAGAGGCGGGCAATAT 60.764 55.000 3.78 0.00 0.00 1.28
445 446 1.267121 GGAGAGAGGCGGGCAATATA 58.733 55.000 3.78 0.00 0.00 0.86
446 447 1.066787 GGAGAGAGGCGGGCAATATAC 60.067 57.143 3.78 0.00 0.00 1.47
447 448 1.896465 GAGAGAGGCGGGCAATATACT 59.104 52.381 3.78 0.00 0.00 2.12
448 449 2.300437 GAGAGAGGCGGGCAATATACTT 59.700 50.000 3.78 0.00 0.00 2.24
449 450 2.300437 AGAGAGGCGGGCAATATACTTC 59.700 50.000 3.78 0.00 0.00 3.01
450 451 2.037251 GAGAGGCGGGCAATATACTTCA 59.963 50.000 3.78 0.00 0.00 3.02
451 452 2.438021 AGAGGCGGGCAATATACTTCAA 59.562 45.455 3.78 0.00 0.00 2.69
452 453 2.548480 GAGGCGGGCAATATACTTCAAC 59.452 50.000 3.78 0.00 0.00 3.18
453 454 2.092646 AGGCGGGCAATATACTTCAACA 60.093 45.455 3.78 0.00 0.00 3.33
454 455 2.290641 GGCGGGCAATATACTTCAACAG 59.709 50.000 0.00 0.00 0.00 3.16
455 456 2.943033 GCGGGCAATATACTTCAACAGT 59.057 45.455 0.00 0.00 39.87 3.55
456 457 3.377172 GCGGGCAATATACTTCAACAGTT 59.623 43.478 0.00 0.00 36.88 3.16
457 458 4.573201 GCGGGCAATATACTTCAACAGTTA 59.427 41.667 0.00 0.00 36.88 2.24
458 459 5.238650 GCGGGCAATATACTTCAACAGTTAT 59.761 40.000 0.00 0.00 36.88 1.89
459 460 6.658831 CGGGCAATATACTTCAACAGTTATG 58.341 40.000 0.00 0.00 36.88 1.90
460 461 6.438763 GGGCAATATACTTCAACAGTTATGC 58.561 40.000 0.00 0.00 36.88 3.14
461 462 6.039270 GGGCAATATACTTCAACAGTTATGCA 59.961 38.462 0.00 0.00 36.88 3.96
462 463 7.416213 GGGCAATATACTTCAACAGTTATGCAA 60.416 37.037 0.00 0.00 36.88 4.08
463 464 7.645340 GGCAATATACTTCAACAGTTATGCAAG 59.355 37.037 0.00 0.00 36.88 4.01
464 465 7.166473 GCAATATACTTCAACAGTTATGCAAGC 59.834 37.037 0.00 0.00 36.88 4.01
465 466 8.400947 CAATATACTTCAACAGTTATGCAAGCT 58.599 33.333 0.00 0.00 36.88 3.74
466 467 4.756084 ACTTCAACAGTTATGCAAGCTC 57.244 40.909 0.00 0.00 27.32 4.09
467 468 3.503748 ACTTCAACAGTTATGCAAGCTCC 59.496 43.478 0.00 0.00 27.32 4.70
468 469 3.423539 TCAACAGTTATGCAAGCTCCT 57.576 42.857 0.00 0.00 0.00 3.69
469 470 3.754965 TCAACAGTTATGCAAGCTCCTT 58.245 40.909 0.00 0.00 0.00 3.36
470 471 3.753272 TCAACAGTTATGCAAGCTCCTTC 59.247 43.478 0.00 0.00 0.00 3.46
471 472 2.350522 ACAGTTATGCAAGCTCCTTCG 58.649 47.619 0.00 0.00 0.00 3.79
472 473 2.289694 ACAGTTATGCAAGCTCCTTCGT 60.290 45.455 0.00 0.00 0.00 3.85
473 474 2.349886 CAGTTATGCAAGCTCCTTCGTC 59.650 50.000 0.00 0.00 0.00 4.20
474 475 2.028112 AGTTATGCAAGCTCCTTCGTCA 60.028 45.455 0.00 0.00 0.00 4.35
475 476 2.939103 GTTATGCAAGCTCCTTCGTCAT 59.061 45.455 0.00 0.00 0.00 3.06
476 477 1.376543 ATGCAAGCTCCTTCGTCATG 58.623 50.000 0.00 0.00 0.00 3.07
477 478 0.321346 TGCAAGCTCCTTCGTCATGA 59.679 50.000 0.00 0.00 0.00 3.07
478 479 0.723981 GCAAGCTCCTTCGTCATGAC 59.276 55.000 16.21 16.21 0.00 3.06
479 480 1.674221 GCAAGCTCCTTCGTCATGACT 60.674 52.381 22.95 0.00 0.00 3.41
480 481 2.693069 CAAGCTCCTTCGTCATGACTT 58.307 47.619 22.95 5.64 0.00 3.01
481 482 3.070018 CAAGCTCCTTCGTCATGACTTT 58.930 45.455 22.95 2.89 0.00 2.66
482 483 2.966050 AGCTCCTTCGTCATGACTTTC 58.034 47.619 22.95 5.80 0.00 2.62
483 484 2.564947 AGCTCCTTCGTCATGACTTTCT 59.435 45.455 22.95 7.78 0.00 2.52
484 485 2.926838 GCTCCTTCGTCATGACTTTCTC 59.073 50.000 22.95 3.44 0.00 2.87
485 486 3.615110 GCTCCTTCGTCATGACTTTCTCA 60.615 47.826 22.95 2.66 0.00 3.27
486 487 4.172505 CTCCTTCGTCATGACTTTCTCAG 58.827 47.826 22.95 6.32 30.20 3.35
487 488 3.574396 TCCTTCGTCATGACTTTCTCAGT 59.426 43.478 22.95 0.00 39.07 3.41
497 498 3.978687 GACTTTCTCAGTCCGTCTTTCA 58.021 45.455 0.00 0.00 45.84 2.69
498 499 4.561105 GACTTTCTCAGTCCGTCTTTCAT 58.439 43.478 0.00 0.00 45.84 2.57
499 500 4.561105 ACTTTCTCAGTCCGTCTTTCATC 58.439 43.478 0.00 0.00 0.00 2.92
500 501 3.594603 TTCTCAGTCCGTCTTTCATCC 57.405 47.619 0.00 0.00 0.00 3.51
501 502 1.472878 TCTCAGTCCGTCTTTCATCCG 59.527 52.381 0.00 0.00 0.00 4.18
502 503 0.108804 TCAGTCCGTCTTTCATCCGC 60.109 55.000 0.00 0.00 0.00 5.54
503 504 1.084370 CAGTCCGTCTTTCATCCGCC 61.084 60.000 0.00 0.00 0.00 6.13
504 505 2.165301 GTCCGTCTTTCATCCGCCG 61.165 63.158 0.00 0.00 0.00 6.46
505 506 3.564027 CCGTCTTTCATCCGCCGC 61.564 66.667 0.00 0.00 0.00 6.53
506 507 3.913573 CGTCTTTCATCCGCCGCG 61.914 66.667 5.59 5.59 0.00 6.46
507 508 2.813908 GTCTTTCATCCGCCGCGT 60.814 61.111 12.58 0.00 0.00 6.01
508 509 2.508439 TCTTTCATCCGCCGCGTC 60.508 61.111 12.58 0.00 0.00 5.19
509 510 2.813474 CTTTCATCCGCCGCGTCA 60.813 61.111 12.58 0.00 0.00 4.35
510 511 3.083600 CTTTCATCCGCCGCGTCAC 62.084 63.158 12.58 0.00 0.00 3.67
522 523 2.358125 CGTCACCCATCACGGCAA 60.358 61.111 0.00 0.00 32.19 4.52
523 524 2.677003 CGTCACCCATCACGGCAAC 61.677 63.158 0.00 0.00 32.19 4.17
524 525 1.599518 GTCACCCATCACGGCAACA 60.600 57.895 0.00 0.00 0.00 3.33
525 526 0.960364 GTCACCCATCACGGCAACAT 60.960 55.000 0.00 0.00 0.00 2.71
526 527 0.615850 TCACCCATCACGGCAACATA 59.384 50.000 0.00 0.00 0.00 2.29
527 528 1.016627 CACCCATCACGGCAACATAG 58.983 55.000 0.00 0.00 0.00 2.23
528 529 0.618458 ACCCATCACGGCAACATAGT 59.382 50.000 0.00 0.00 0.00 2.12
529 530 1.016627 CCCATCACGGCAACATAGTG 58.983 55.000 0.00 0.00 37.24 2.74
530 531 0.378257 CCATCACGGCAACATAGTGC 59.622 55.000 0.00 0.00 44.14 4.40
538 539 1.701704 GCAACATAGTGCCTTTGTGC 58.298 50.000 0.54 0.00 38.66 4.57
539 540 1.669795 GCAACATAGTGCCTTTGTGCC 60.670 52.381 0.54 0.00 38.66 5.01
540 541 1.888512 CAACATAGTGCCTTTGTGCCT 59.111 47.619 0.54 0.00 0.00 4.75
541 542 1.826385 ACATAGTGCCTTTGTGCCTC 58.174 50.000 0.00 0.00 0.00 4.70
542 543 1.098050 CATAGTGCCTTTGTGCCTCC 58.902 55.000 0.00 0.00 0.00 4.30
543 544 0.995024 ATAGTGCCTTTGTGCCTCCT 59.005 50.000 0.00 0.00 0.00 3.69
544 545 0.324943 TAGTGCCTTTGTGCCTCCTC 59.675 55.000 0.00 0.00 0.00 3.71
545 546 2.032528 TGCCTTTGTGCCTCCTCG 59.967 61.111 0.00 0.00 0.00 4.63
546 547 3.435186 GCCTTTGTGCCTCCTCGC 61.435 66.667 0.00 0.00 0.00 5.03
547 548 2.747855 CCTTTGTGCCTCCTCGCC 60.748 66.667 0.00 0.00 0.00 5.54
548 549 2.348998 CTTTGTGCCTCCTCGCCT 59.651 61.111 0.00 0.00 0.00 5.52
549 550 1.596934 CTTTGTGCCTCCTCGCCTA 59.403 57.895 0.00 0.00 0.00 3.93
550 551 0.741221 CTTTGTGCCTCCTCGCCTAC 60.741 60.000 0.00 0.00 0.00 3.18
551 552 2.180159 TTTGTGCCTCCTCGCCTACC 62.180 60.000 0.00 0.00 0.00 3.18
552 553 2.760385 GTGCCTCCTCGCCTACCT 60.760 66.667 0.00 0.00 0.00 3.08
553 554 2.442272 TGCCTCCTCGCCTACCTC 60.442 66.667 0.00 0.00 0.00 3.85
554 555 3.228017 GCCTCCTCGCCTACCTCC 61.228 72.222 0.00 0.00 0.00 4.30
555 556 2.279073 CCTCCTCGCCTACCTCCA 59.721 66.667 0.00 0.00 0.00 3.86
556 557 1.830408 CCTCCTCGCCTACCTCCAG 60.830 68.421 0.00 0.00 0.00 3.86
557 558 1.227664 CTCCTCGCCTACCTCCAGA 59.772 63.158 0.00 0.00 0.00 3.86
558 559 1.076923 TCCTCGCCTACCTCCAGAC 60.077 63.158 0.00 0.00 0.00 3.51
559 560 1.379977 CCTCGCCTACCTCCAGACA 60.380 63.158 0.00 0.00 0.00 3.41
560 561 1.668101 CCTCGCCTACCTCCAGACAC 61.668 65.000 0.00 0.00 0.00 3.67
561 562 0.965866 CTCGCCTACCTCCAGACACA 60.966 60.000 0.00 0.00 0.00 3.72
562 563 1.215647 CGCCTACCTCCAGACACAC 59.784 63.158 0.00 0.00 0.00 3.82
563 564 1.215647 GCCTACCTCCAGACACACG 59.784 63.158 0.00 0.00 0.00 4.49
564 565 1.248785 GCCTACCTCCAGACACACGA 61.249 60.000 0.00 0.00 0.00 4.35
565 566 1.475403 CCTACCTCCAGACACACGAT 58.525 55.000 0.00 0.00 0.00 3.73
566 567 1.135139 CCTACCTCCAGACACACGATG 59.865 57.143 0.00 0.00 0.00 3.84
567 568 2.092323 CTACCTCCAGACACACGATGA 58.908 52.381 0.00 0.00 0.00 2.92
568 569 1.561643 ACCTCCAGACACACGATGAT 58.438 50.000 0.00 0.00 0.00 2.45
569 570 1.205655 ACCTCCAGACACACGATGATG 59.794 52.381 0.00 0.00 0.00 3.07
570 571 1.284657 CTCCAGACACACGATGATGC 58.715 55.000 0.00 0.00 0.00 3.91
571 572 0.458370 TCCAGACACACGATGATGCG 60.458 55.000 0.00 0.00 37.29 4.73
572 573 1.423721 CCAGACACACGATGATGCGG 61.424 60.000 0.00 0.00 35.12 5.69
573 574 0.458370 CAGACACACGATGATGCGGA 60.458 55.000 0.00 0.00 35.12 5.54
574 575 0.179127 AGACACACGATGATGCGGAG 60.179 55.000 0.00 0.00 35.12 4.63
575 576 1.148157 GACACACGATGATGCGGAGG 61.148 60.000 0.00 0.00 35.12 4.30
576 577 2.202932 ACACGATGATGCGGAGGC 60.203 61.111 0.00 0.00 40.52 4.70
577 578 2.107750 CACGATGATGCGGAGGCT 59.892 61.111 0.00 0.00 40.82 4.58
578 579 1.953138 CACGATGATGCGGAGGCTC 60.953 63.158 5.78 5.78 40.82 4.70
579 580 2.356793 CGATGATGCGGAGGCTCC 60.357 66.667 24.06 24.06 40.82 4.70
597 598 4.083862 GCCGCCGTCCCTCTCTTT 62.084 66.667 0.00 0.00 0.00 2.52
598 599 2.125512 CCGCCGTCCCTCTCTTTG 60.126 66.667 0.00 0.00 0.00 2.77
599 600 2.125512 CGCCGTCCCTCTCTTTGG 60.126 66.667 0.00 0.00 0.00 3.28
600 601 2.943978 CGCCGTCCCTCTCTTTGGT 61.944 63.158 0.00 0.00 0.00 3.67
601 602 1.376037 GCCGTCCCTCTCTTTGGTG 60.376 63.158 0.00 0.00 0.00 4.17
602 603 1.376037 CCGTCCCTCTCTTTGGTGC 60.376 63.158 0.00 0.00 0.00 5.01
603 604 1.371183 CGTCCCTCTCTTTGGTGCA 59.629 57.895 0.00 0.00 0.00 4.57
604 605 0.951040 CGTCCCTCTCTTTGGTGCAC 60.951 60.000 8.80 8.80 0.00 4.57
605 606 0.606673 GTCCCTCTCTTTGGTGCACC 60.607 60.000 29.67 29.67 0.00 5.01
606 607 1.303643 CCCTCTCTTTGGTGCACCC 60.304 63.158 32.62 15.42 34.29 4.61
607 608 1.455849 CCTCTCTTTGGTGCACCCA 59.544 57.895 32.62 20.45 43.27 4.51
870 871 3.391506 GGTAAATATACCCGCTCGGTT 57.608 47.619 7.59 0.00 45.36 4.44
1155 1174 3.194116 AGCCATGGATTTTGCTTAGTGTG 59.806 43.478 18.40 0.00 0.00 3.82
1259 1292 5.542635 TCATCTCTGTACAGTGTTAGGGTTT 59.457 40.000 21.99 0.00 0.00 3.27
1284 1317 6.811634 TGCTGATTTGGGGATTTAATGAAT 57.188 33.333 0.00 0.00 0.00 2.57
1286 1319 8.316497 TGCTGATTTGGGGATTTAATGAATAA 57.684 30.769 0.00 0.00 0.00 1.40
1384 1418 0.895559 CACTGTGGAGCCCCTTTTCC 60.896 60.000 0.00 0.00 0.00 3.13
1603 1637 8.028938 AGACACATATGTATTTTTGCCACTTTC 58.971 33.333 8.32 0.00 39.95 2.62
1701 1735 2.037847 GGTTGATGGGCCTTGGCT 59.962 61.111 11.71 0.00 0.00 4.75
1975 2009 7.315066 AGAACTTGAGAAGAAGAAGAAGGAT 57.685 36.000 0.00 0.00 0.00 3.24
1978 2012 6.935167 ACTTGAGAAGAAGAAGAAGGATCTC 58.065 40.000 0.00 0.00 33.77 2.75
2026 2060 2.888834 TGGAAAAGCTCAAACTTGCC 57.111 45.000 0.00 0.00 0.00 4.52
2060 2094 2.000637 GCATTTTGCAGAGCCAAGCTC 61.001 52.381 8.55 8.55 45.12 4.09
2292 2326 0.630673 TAAGGATGTGGCCTGGCATT 59.369 50.000 22.05 0.93 38.58 3.56
2418 2452 8.691661 ATGGTATTAAGTGTTGTAATGGATCC 57.308 34.615 4.20 4.20 0.00 3.36
2437 2471 7.023120 TGGATCCCCTATGCTATTAAGTAGTT 58.977 38.462 9.90 0.00 32.72 2.24
2573 2637 2.749621 CTCTGACCAAATGCAACCCTAC 59.250 50.000 0.00 0.00 0.00 3.18
2601 2665 0.027058 ACCCCAATCCCCCATCCATA 60.027 55.000 0.00 0.00 0.00 2.74
2675 2739 2.536066 GCCACCCAAAAGAAACCCTAT 58.464 47.619 0.00 0.00 0.00 2.57
2683 2747 5.828328 CCCAAAAGAAACCCTATAGATGGAC 59.172 44.000 0.00 0.00 0.00 4.02
2744 2809 0.320421 GGAAGTACGGACAGCAGCAA 60.320 55.000 0.00 0.00 0.00 3.91
2824 2898 0.759346 AGCAAGAGGAGTTCAACCGT 59.241 50.000 0.00 0.00 0.00 4.83
2853 2927 3.323979 TCCAACAAGGTACTGGAGAAGTC 59.676 47.826 0.00 0.00 40.86 3.01
2890 2964 0.258774 AGCTGGTTTTCACTGGTGGT 59.741 50.000 0.70 0.00 0.00 4.16
2905 2979 1.639108 GGTGGTAGGGGAAGGTCATTT 59.361 52.381 0.00 0.00 0.00 2.32
2953 3027 4.215349 GCAGTCATGGCTCCTCAC 57.785 61.111 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.093816 TCTGAGTTCGAGACCGTAGCTA 60.094 50.000 0.00 0.00 37.05 3.32
5 6 1.802960 GTGTCTGAGTTCGAGACCGTA 59.197 52.381 0.00 0.00 39.36 4.02
6 7 0.592148 GTGTCTGAGTTCGAGACCGT 59.408 55.000 0.00 0.00 39.36 4.83
7 8 0.452950 CGTGTCTGAGTTCGAGACCG 60.453 60.000 0.00 0.00 39.36 4.79
8 9 0.592148 ACGTGTCTGAGTTCGAGACC 59.408 55.000 0.00 0.00 39.36 3.85
9 10 2.044860 CAACGTGTCTGAGTTCGAGAC 58.955 52.381 0.00 0.00 40.34 3.36
10 11 1.599667 GCAACGTGTCTGAGTTCGAGA 60.600 52.381 0.00 0.00 0.00 4.04
11 12 0.778815 GCAACGTGTCTGAGTTCGAG 59.221 55.000 0.00 0.00 0.00 4.04
12 13 0.101579 TGCAACGTGTCTGAGTTCGA 59.898 50.000 0.00 0.00 0.00 3.71
13 14 0.229753 GTGCAACGTGTCTGAGTTCG 59.770 55.000 0.00 0.00 0.00 3.95
14 15 0.582005 GGTGCAACGTGTCTGAGTTC 59.418 55.000 0.00 0.00 38.12 3.01
15 16 1.151777 CGGTGCAACGTGTCTGAGTT 61.152 55.000 17.95 0.00 38.12 3.01
16 17 1.591594 CGGTGCAACGTGTCTGAGT 60.592 57.895 17.95 0.00 38.12 3.41
17 18 2.943345 GCGGTGCAACGTGTCTGAG 61.943 63.158 27.13 0.00 38.12 3.35
18 19 2.964925 GCGGTGCAACGTGTCTGA 60.965 61.111 27.13 0.00 38.12 3.27
19 20 2.818487 TTGCGGTGCAACGTGTCTG 61.818 57.895 27.13 0.00 43.99 3.51
20 21 2.512745 TTGCGGTGCAACGTGTCT 60.513 55.556 27.13 0.00 43.99 3.41
28 29 3.736100 CGATGCCTTTGCGGTGCA 61.736 61.111 0.00 0.00 41.78 4.57
30 31 3.434319 AGCGATGCCTTTGCGGTG 61.434 61.111 0.00 0.00 41.78 4.94
31 32 3.434319 CAGCGATGCCTTTGCGGT 61.434 61.111 0.00 0.00 41.78 5.68
32 33 4.183686 CCAGCGATGCCTTTGCGG 62.184 66.667 0.00 0.00 41.78 5.69
33 34 2.106074 TACCAGCGATGCCTTTGCG 61.106 57.895 0.00 0.00 41.78 4.85
34 35 1.429423 GTACCAGCGATGCCTTTGC 59.571 57.895 0.00 0.00 38.26 3.68
35 36 1.715585 CGTACCAGCGATGCCTTTG 59.284 57.895 0.00 0.00 0.00 2.77
36 37 2.106683 GCGTACCAGCGATGCCTTT 61.107 57.895 0.00 0.00 0.00 3.11
37 38 2.511600 GCGTACCAGCGATGCCTT 60.512 61.111 0.00 0.00 0.00 4.35
38 39 4.530857 GGCGTACCAGCGATGCCT 62.531 66.667 0.00 0.00 42.44 4.75
45 46 4.752879 TTCTGCCGGCGTACCAGC 62.753 66.667 23.90 1.48 40.06 4.85
46 47 1.231958 TTTTTCTGCCGGCGTACCAG 61.232 55.000 23.90 13.58 34.57 4.00
47 48 1.227883 TTTTTCTGCCGGCGTACCA 60.228 52.632 23.90 1.77 34.57 3.25
48 49 1.208358 GTTTTTCTGCCGGCGTACC 59.792 57.895 23.90 1.40 0.00 3.34
49 50 1.154543 CGTTTTTCTGCCGGCGTAC 60.155 57.895 23.90 11.67 0.00 3.67
50 51 2.957052 GCGTTTTTCTGCCGGCGTA 61.957 57.895 23.90 9.57 0.00 4.42
51 52 4.322385 GCGTTTTTCTGCCGGCGT 62.322 61.111 23.90 0.00 0.00 5.68
53 54 4.322385 ACGCGTTTTTCTGCCGGC 62.322 61.111 22.73 22.73 0.00 6.13
54 55 2.426752 CACGCGTTTTTCTGCCGG 60.427 61.111 10.22 0.00 0.00 6.13
55 56 3.091022 GCACGCGTTTTTCTGCCG 61.091 61.111 10.22 0.00 0.00 5.69
56 57 2.025441 TGCACGCGTTTTTCTGCC 59.975 55.556 10.22 0.00 0.00 4.85
57 58 2.626151 CGTGCACGCGTTTTTCTGC 61.626 57.895 28.16 10.01 0.00 4.26
58 59 3.498726 CGTGCACGCGTTTTTCTG 58.501 55.556 28.16 0.00 0.00 3.02
100 101 4.554036 GAGCGCCCCCTCCATCAC 62.554 72.222 2.29 0.00 0.00 3.06
119 120 4.438065 CGATCTCAAGTAGGATATCCGCAG 60.438 50.000 16.21 9.90 42.08 5.18
120 121 3.440522 CGATCTCAAGTAGGATATCCGCA 59.559 47.826 16.21 5.57 42.08 5.69
121 122 3.440872 ACGATCTCAAGTAGGATATCCGC 59.559 47.826 16.21 12.87 42.08 5.54
122 123 4.201734 CGACGATCTCAAGTAGGATATCCG 60.202 50.000 16.21 1.67 42.08 4.18
123 124 4.437659 GCGACGATCTCAAGTAGGATATCC 60.438 50.000 14.41 14.41 0.00 2.59
124 125 4.654015 GCGACGATCTCAAGTAGGATATC 58.346 47.826 0.00 0.00 0.00 1.63
125 126 3.125487 CGCGACGATCTCAAGTAGGATAT 59.875 47.826 0.00 0.00 0.00 1.63
126 127 2.479275 CGCGACGATCTCAAGTAGGATA 59.521 50.000 0.00 0.00 0.00 2.59
127 128 1.264557 CGCGACGATCTCAAGTAGGAT 59.735 52.381 0.00 0.00 0.00 3.24
128 129 0.656259 CGCGACGATCTCAAGTAGGA 59.344 55.000 0.00 0.00 0.00 2.94
129 130 0.930742 GCGCGACGATCTCAAGTAGG 60.931 60.000 12.10 0.00 0.00 3.18
130 131 2.485933 GCGCGACGATCTCAAGTAG 58.514 57.895 12.10 0.00 0.00 2.57
131 132 4.684265 GCGCGACGATCTCAAGTA 57.316 55.556 12.10 0.00 0.00 2.24
150 151 3.432051 GAGGGTGCGGATGTCGGAG 62.432 68.421 0.00 0.00 40.59 4.63
151 152 3.458163 GAGGGTGCGGATGTCGGA 61.458 66.667 0.00 0.00 39.69 4.55
152 153 2.978452 GATGAGGGTGCGGATGTCGG 62.978 65.000 0.00 0.00 39.69 4.79
153 154 1.592669 GATGAGGGTGCGGATGTCG 60.593 63.158 0.00 0.00 42.76 4.35
154 155 1.227674 GGATGAGGGTGCGGATGTC 60.228 63.158 0.00 0.00 0.00 3.06
155 156 2.911143 GGATGAGGGTGCGGATGT 59.089 61.111 0.00 0.00 0.00 3.06
156 157 2.280389 CGGATGAGGGTGCGGATG 60.280 66.667 0.00 0.00 0.00 3.51
157 158 4.241555 GCGGATGAGGGTGCGGAT 62.242 66.667 0.00 0.00 33.26 4.18
174 175 0.657312 TGAATTCAATAGCGGCGCAG 59.343 50.000 35.02 19.90 0.00 5.18
175 176 1.002576 CATGAATTCAATAGCGGCGCA 60.003 47.619 35.02 20.14 0.00 6.09
176 177 1.678360 CATGAATTCAATAGCGGCGC 58.322 50.000 26.86 26.86 0.00 6.53
177 178 1.265095 AGCATGAATTCAATAGCGGCG 59.735 47.619 13.09 0.51 0.00 6.46
178 179 2.351157 GGAGCATGAATTCAATAGCGGC 60.351 50.000 13.09 13.18 0.00 6.53
179 180 2.880268 TGGAGCATGAATTCAATAGCGG 59.120 45.455 13.09 0.00 0.00 5.52
180 181 3.608707 GCTGGAGCATGAATTCAATAGCG 60.609 47.826 13.09 5.85 41.59 4.26
181 182 3.305199 GGCTGGAGCATGAATTCAATAGC 60.305 47.826 13.09 16.11 44.36 2.97
182 183 3.887110 TGGCTGGAGCATGAATTCAATAG 59.113 43.478 13.09 6.87 44.36 1.73
183 184 3.900971 TGGCTGGAGCATGAATTCAATA 58.099 40.909 13.09 0.00 44.36 1.90
184 185 2.742348 TGGCTGGAGCATGAATTCAAT 58.258 42.857 13.09 1.32 44.36 2.57
185 186 2.219080 TGGCTGGAGCATGAATTCAA 57.781 45.000 13.09 0.00 44.36 2.69
186 187 1.820519 GTTGGCTGGAGCATGAATTCA 59.179 47.619 11.26 11.26 44.36 2.57
187 188 2.097825 AGTTGGCTGGAGCATGAATTC 58.902 47.619 0.00 0.00 44.36 2.17
188 189 2.097825 GAGTTGGCTGGAGCATGAATT 58.902 47.619 0.00 0.00 44.36 2.17
189 190 1.005097 TGAGTTGGCTGGAGCATGAAT 59.995 47.619 0.00 0.00 44.36 2.57
190 191 0.401356 TGAGTTGGCTGGAGCATGAA 59.599 50.000 0.00 0.00 44.36 2.57
191 192 0.622136 ATGAGTTGGCTGGAGCATGA 59.378 50.000 0.00 0.00 44.36 3.07
192 193 1.022735 GATGAGTTGGCTGGAGCATG 58.977 55.000 0.20 0.00 44.36 4.06
193 194 0.106819 GGATGAGTTGGCTGGAGCAT 60.107 55.000 0.20 0.00 44.36 3.79
194 195 1.300963 GGATGAGTTGGCTGGAGCA 59.699 57.895 0.20 0.00 44.36 4.26
195 196 0.322816 TTGGATGAGTTGGCTGGAGC 60.323 55.000 0.00 0.00 41.14 4.70
196 197 2.205022 TTTGGATGAGTTGGCTGGAG 57.795 50.000 0.00 0.00 0.00 3.86
197 198 2.158475 ACTTTTGGATGAGTTGGCTGGA 60.158 45.455 0.00 0.00 0.00 3.86
198 199 2.229784 GACTTTTGGATGAGTTGGCTGG 59.770 50.000 0.00 0.00 0.00 4.85
199 200 2.229784 GGACTTTTGGATGAGTTGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
200 201 2.519013 GGACTTTTGGATGAGTTGGCT 58.481 47.619 0.00 0.00 0.00 4.75
201 202 1.200020 CGGACTTTTGGATGAGTTGGC 59.800 52.381 0.00 0.00 0.00 4.52
202 203 2.778299 TCGGACTTTTGGATGAGTTGG 58.222 47.619 0.00 0.00 0.00 3.77
203 204 3.815401 AGTTCGGACTTTTGGATGAGTTG 59.185 43.478 0.00 0.00 29.87 3.16
204 205 3.815401 CAGTTCGGACTTTTGGATGAGTT 59.185 43.478 0.00 0.00 32.54 3.01
205 206 3.071023 TCAGTTCGGACTTTTGGATGAGT 59.929 43.478 0.00 0.00 32.54 3.41
206 207 3.664107 TCAGTTCGGACTTTTGGATGAG 58.336 45.455 0.00 0.00 32.54 2.90
207 208 3.762407 TCAGTTCGGACTTTTGGATGA 57.238 42.857 0.00 0.00 32.54 2.92
208 209 3.127548 CCATCAGTTCGGACTTTTGGATG 59.872 47.826 14.35 13.52 37.46 3.51
209 210 3.009033 TCCATCAGTTCGGACTTTTGGAT 59.991 43.478 17.13 4.78 38.50 3.41
210 211 2.370519 TCCATCAGTTCGGACTTTTGGA 59.629 45.455 17.13 17.13 39.94 3.53
211 212 2.744202 CTCCATCAGTTCGGACTTTTGG 59.256 50.000 13.60 13.60 36.98 3.28
212 213 3.664107 TCTCCATCAGTTCGGACTTTTG 58.336 45.455 0.00 0.00 32.54 2.44
213 214 3.578716 TCTCTCCATCAGTTCGGACTTTT 59.421 43.478 0.00 0.00 32.54 2.27
214 215 3.165875 TCTCTCCATCAGTTCGGACTTT 58.834 45.455 0.00 0.00 32.54 2.66
215 216 2.757868 CTCTCTCCATCAGTTCGGACTT 59.242 50.000 0.00 0.00 32.54 3.01
216 217 2.374184 CTCTCTCCATCAGTTCGGACT 58.626 52.381 0.00 0.00 36.25 3.85
217 218 1.407258 CCTCTCTCCATCAGTTCGGAC 59.593 57.143 0.00 0.00 0.00 4.79
218 219 1.769026 CCTCTCTCCATCAGTTCGGA 58.231 55.000 0.00 0.00 0.00 4.55
219 220 0.103937 GCCTCTCTCCATCAGTTCGG 59.896 60.000 0.00 0.00 0.00 4.30
220 221 0.248825 CGCCTCTCTCCATCAGTTCG 60.249 60.000 0.00 0.00 0.00 3.95
221 222 0.103937 CCGCCTCTCTCCATCAGTTC 59.896 60.000 0.00 0.00 0.00 3.01
222 223 1.333636 CCCGCCTCTCTCCATCAGTT 61.334 60.000 0.00 0.00 0.00 3.16
223 224 1.760086 CCCGCCTCTCTCCATCAGT 60.760 63.158 0.00 0.00 0.00 3.41
224 225 3.136750 CCCGCCTCTCTCCATCAG 58.863 66.667 0.00 0.00 0.00 2.90
225 226 3.157252 GCCCGCCTCTCTCCATCA 61.157 66.667 0.00 0.00 0.00 3.07
226 227 2.049627 ATTGCCCGCCTCTCTCCATC 62.050 60.000 0.00 0.00 0.00 3.51
227 228 0.764369 TATTGCCCGCCTCTCTCCAT 60.764 55.000 0.00 0.00 0.00 3.41
228 229 0.764369 ATATTGCCCGCCTCTCTCCA 60.764 55.000 0.00 0.00 0.00 3.86
229 230 1.066787 GTATATTGCCCGCCTCTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
230 231 1.896465 AGTATATTGCCCGCCTCTCTC 59.104 52.381 0.00 0.00 0.00 3.20
231 232 2.016905 AGTATATTGCCCGCCTCTCT 57.983 50.000 0.00 0.00 0.00 3.10
232 233 2.037251 TGAAGTATATTGCCCGCCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
233 234 2.047061 TGAAGTATATTGCCCGCCTCT 58.953 47.619 0.00 0.00 0.00 3.69
234 235 2.543777 TGAAGTATATTGCCCGCCTC 57.456 50.000 0.00 0.00 0.00 4.70
235 236 2.092646 TGTTGAAGTATATTGCCCGCCT 60.093 45.455 0.00 0.00 0.00 5.52
236 237 2.032924 GTGTTGAAGTATATTGCCCGCC 59.967 50.000 0.00 0.00 0.00 6.13
237 238 2.032924 GGTGTTGAAGTATATTGCCCGC 59.967 50.000 0.00 0.00 0.00 6.13
238 239 2.616842 GGGTGTTGAAGTATATTGCCCG 59.383 50.000 0.00 0.00 0.00 6.13
239 240 2.956333 GGGGTGTTGAAGTATATTGCCC 59.044 50.000 0.00 0.00 0.00 5.36
240 241 2.956333 GGGGGTGTTGAAGTATATTGCC 59.044 50.000 0.00 0.00 0.00 4.52
259 260 0.396695 TAAGCCTAGACGTGAGGGGG 60.397 60.000 13.64 1.18 34.35 5.40
260 261 1.481871 TTAAGCCTAGACGTGAGGGG 58.518 55.000 13.64 2.79 34.35 4.79
261 262 3.821421 AATTAAGCCTAGACGTGAGGG 57.179 47.619 13.64 4.42 34.35 4.30
262 263 4.299978 GCTAATTAAGCCTAGACGTGAGG 58.700 47.826 8.49 8.49 46.25 3.86
283 284 9.103861 GCCTATATAAATTCCACATCTAAGAGC 57.896 37.037 0.00 0.00 0.00 4.09
284 285 9.606631 GGCCTATATAAATTCCACATCTAAGAG 57.393 37.037 0.00 0.00 0.00 2.85
285 286 8.258007 CGGCCTATATAAATTCCACATCTAAGA 58.742 37.037 0.00 0.00 0.00 2.10
286 287 7.011482 GCGGCCTATATAAATTCCACATCTAAG 59.989 40.741 0.00 0.00 0.00 2.18
287 288 6.821665 GCGGCCTATATAAATTCCACATCTAA 59.178 38.462 0.00 0.00 0.00 2.10
288 289 6.070481 TGCGGCCTATATAAATTCCACATCTA 60.070 38.462 0.00 0.00 0.00 1.98
289 290 5.186198 GCGGCCTATATAAATTCCACATCT 58.814 41.667 0.00 0.00 0.00 2.90
290 291 4.941263 TGCGGCCTATATAAATTCCACATC 59.059 41.667 0.00 0.00 0.00 3.06
291 292 4.917385 TGCGGCCTATATAAATTCCACAT 58.083 39.130 0.00 0.00 0.00 3.21
292 293 4.041075 TCTGCGGCCTATATAAATTCCACA 59.959 41.667 0.00 0.00 0.00 4.17
293 294 4.575885 TCTGCGGCCTATATAAATTCCAC 58.424 43.478 0.00 0.00 0.00 4.02
294 295 4.901197 TCTGCGGCCTATATAAATTCCA 57.099 40.909 0.00 0.00 0.00 3.53
295 296 5.297029 GGATTCTGCGGCCTATATAAATTCC 59.703 44.000 0.00 0.00 0.00 3.01
296 297 6.116126 AGGATTCTGCGGCCTATATAAATTC 58.884 40.000 0.00 0.00 0.00 2.17
297 298 6.067217 AGGATTCTGCGGCCTATATAAATT 57.933 37.500 0.00 0.00 0.00 1.82
298 299 5.700402 AGGATTCTGCGGCCTATATAAAT 57.300 39.130 0.00 0.00 0.00 1.40
299 300 5.499004 AAGGATTCTGCGGCCTATATAAA 57.501 39.130 0.00 0.00 0.00 1.40
300 301 5.499004 AAAGGATTCTGCGGCCTATATAA 57.501 39.130 0.00 0.00 0.00 0.98
301 302 5.499004 AAAAGGATTCTGCGGCCTATATA 57.501 39.130 0.00 0.00 0.00 0.86
302 303 4.373156 AAAAGGATTCTGCGGCCTATAT 57.627 40.909 0.00 0.00 0.00 0.86
303 304 3.857157 AAAAGGATTCTGCGGCCTATA 57.143 42.857 0.00 0.00 0.00 1.31
304 305 2.736670 AAAAGGATTCTGCGGCCTAT 57.263 45.000 0.00 0.00 0.00 2.57
305 306 2.507407 AAAAAGGATTCTGCGGCCTA 57.493 45.000 0.00 0.00 0.00 3.93
306 307 3.363787 AAAAAGGATTCTGCGGCCT 57.636 47.368 0.00 0.00 0.00 5.19
334 335 2.594303 CAAGACCCTGCCAACGCA 60.594 61.111 0.00 0.00 44.78 5.24
335 336 1.896660 TTCAAGACCCTGCCAACGC 60.897 57.895 0.00 0.00 0.00 4.84
336 337 0.535102 AGTTCAAGACCCTGCCAACG 60.535 55.000 0.00 0.00 0.00 4.10
337 338 1.239347 GAGTTCAAGACCCTGCCAAC 58.761 55.000 0.00 0.00 0.00 3.77
338 339 0.843309 TGAGTTCAAGACCCTGCCAA 59.157 50.000 0.00 0.00 0.00 4.52
339 340 0.843309 TTGAGTTCAAGACCCTGCCA 59.157 50.000 0.00 0.00 0.00 4.92
340 341 3.725754 TTGAGTTCAAGACCCTGCC 57.274 52.632 0.00 0.00 0.00 4.85
357 358 1.757699 GTATCCGAGCCAAGAGGTCTT 59.242 52.381 0.00 0.00 41.03 3.01
358 359 1.404843 GTATCCGAGCCAAGAGGTCT 58.595 55.000 0.00 0.00 41.03 3.85
359 360 0.389757 GGTATCCGAGCCAAGAGGTC 59.610 60.000 0.00 0.00 39.73 3.85
360 361 0.325296 TGGTATCCGAGCCAAGAGGT 60.325 55.000 0.00 0.00 37.19 3.85
361 362 1.051812 ATGGTATCCGAGCCAAGAGG 58.948 55.000 0.00 0.00 38.38 3.69
362 363 4.021104 TCAATATGGTATCCGAGCCAAGAG 60.021 45.833 0.00 0.00 38.38 2.85
363 364 3.901222 TCAATATGGTATCCGAGCCAAGA 59.099 43.478 0.00 0.00 38.38 3.02
364 365 4.271696 TCAATATGGTATCCGAGCCAAG 57.728 45.455 0.00 0.00 38.38 3.61
365 366 4.698201 TTCAATATGGTATCCGAGCCAA 57.302 40.909 0.00 0.00 38.38 4.52
366 367 4.908601 ATTCAATATGGTATCCGAGCCA 57.091 40.909 0.00 0.00 39.33 4.75
367 368 5.245531 TGAATTCAATATGGTATCCGAGCC 58.754 41.667 5.45 0.00 0.00 4.70
368 369 6.676456 GCATGAATTCAATATGGTATCCGAGC 60.676 42.308 13.09 0.00 0.00 5.03
369 370 6.596888 AGCATGAATTCAATATGGTATCCGAG 59.403 38.462 13.09 0.00 31.45 4.63
370 371 6.475504 AGCATGAATTCAATATGGTATCCGA 58.524 36.000 13.09 0.00 31.45 4.55
371 372 6.183360 GGAGCATGAATTCAATATGGTATCCG 60.183 42.308 13.09 0.00 33.19 4.18
372 373 6.660521 TGGAGCATGAATTCAATATGGTATCC 59.339 38.462 13.09 10.53 33.19 2.59
373 374 7.627939 GCTGGAGCATGAATTCAATATGGTATC 60.628 40.741 13.09 8.45 41.59 2.24
374 375 6.152323 GCTGGAGCATGAATTCAATATGGTAT 59.848 38.462 13.09 0.00 41.59 2.73
375 376 5.474532 GCTGGAGCATGAATTCAATATGGTA 59.525 40.000 13.09 0.00 41.59 3.25
376 377 4.280174 GCTGGAGCATGAATTCAATATGGT 59.720 41.667 13.09 11.91 41.59 3.55
377 378 4.321750 GGCTGGAGCATGAATTCAATATGG 60.322 45.833 13.09 1.51 44.36 2.74
378 379 4.279922 TGGCTGGAGCATGAATTCAATATG 59.720 41.667 13.09 7.69 44.36 1.78
379 380 4.476297 TGGCTGGAGCATGAATTCAATAT 58.524 39.130 13.09 0.54 44.36 1.28
380 381 3.900971 TGGCTGGAGCATGAATTCAATA 58.099 40.909 13.09 0.00 44.36 1.90
381 382 2.742348 TGGCTGGAGCATGAATTCAAT 58.258 42.857 13.09 1.32 44.36 2.57
382 383 2.219080 TGGCTGGAGCATGAATTCAA 57.781 45.000 13.09 0.00 44.36 2.69
383 384 1.820519 GTTGGCTGGAGCATGAATTCA 59.179 47.619 11.26 11.26 44.36 2.57
384 385 2.097825 AGTTGGCTGGAGCATGAATTC 58.902 47.619 0.00 0.00 44.36 2.17
385 386 2.097825 GAGTTGGCTGGAGCATGAATT 58.902 47.619 0.00 0.00 44.36 2.17
386 387 1.005097 TGAGTTGGCTGGAGCATGAAT 59.995 47.619 0.00 0.00 44.36 2.57
387 388 0.401356 TGAGTTGGCTGGAGCATGAA 59.599 50.000 0.00 0.00 44.36 2.57
388 389 0.622136 ATGAGTTGGCTGGAGCATGA 59.378 50.000 0.00 0.00 44.36 3.07
389 390 1.022735 GATGAGTTGGCTGGAGCATG 58.977 55.000 0.20 0.00 44.36 4.06
390 391 0.106819 GGATGAGTTGGCTGGAGCAT 60.107 55.000 0.20 0.00 44.36 3.79
391 392 1.300963 GGATGAGTTGGCTGGAGCA 59.699 57.895 0.20 0.00 44.36 4.26
392 393 0.322816 TTGGATGAGTTGGCTGGAGC 60.323 55.000 0.00 0.00 41.14 4.70
393 394 2.205022 TTTGGATGAGTTGGCTGGAG 57.795 50.000 0.00 0.00 0.00 3.86
394 395 2.158475 ACTTTTGGATGAGTTGGCTGGA 60.158 45.455 0.00 0.00 0.00 3.86
395 396 2.229784 GACTTTTGGATGAGTTGGCTGG 59.770 50.000 0.00 0.00 0.00 4.85
396 397 2.229784 GGACTTTTGGATGAGTTGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
397 398 2.158475 TGGACTTTTGGATGAGTTGGCT 60.158 45.455 0.00 0.00 0.00 4.75
398 399 2.238521 TGGACTTTTGGATGAGTTGGC 58.761 47.619 0.00 0.00 0.00 4.52
399 400 4.342092 AGTTTGGACTTTTGGATGAGTTGG 59.658 41.667 0.00 0.00 29.87 3.77
400 401 5.067674 TCAGTTTGGACTTTTGGATGAGTTG 59.932 40.000 0.00 0.00 32.54 3.16
401 402 5.200483 TCAGTTTGGACTTTTGGATGAGTT 58.800 37.500 0.00 0.00 32.54 3.01
402 403 4.792068 TCAGTTTGGACTTTTGGATGAGT 58.208 39.130 0.00 0.00 32.54 3.41
403 404 5.336213 CCATCAGTTTGGACTTTTGGATGAG 60.336 44.000 0.00 0.00 39.25 2.90
404 405 4.523943 CCATCAGTTTGGACTTTTGGATGA 59.476 41.667 0.00 0.00 39.25 2.92
405 406 4.523943 TCCATCAGTTTGGACTTTTGGATG 59.476 41.667 0.00 0.00 40.90 3.51
406 407 4.739793 TCCATCAGTTTGGACTTTTGGAT 58.260 39.130 4.10 0.00 40.90 3.41
407 408 4.141274 TCTCCATCAGTTTGGACTTTTGGA 60.141 41.667 6.91 6.91 40.90 3.53
408 409 4.144297 TCTCCATCAGTTTGGACTTTTGG 58.856 43.478 0.00 0.00 40.90 3.28
409 410 5.065914 TCTCTCCATCAGTTTGGACTTTTG 58.934 41.667 0.00 0.00 40.90 2.44
410 411 5.310409 TCTCTCCATCAGTTTGGACTTTT 57.690 39.130 0.00 0.00 40.90 2.27
411 412 4.263243 CCTCTCTCCATCAGTTTGGACTTT 60.263 45.833 0.00 0.00 40.90 2.66
412 413 3.262915 CCTCTCTCCATCAGTTTGGACTT 59.737 47.826 0.00 0.00 40.90 3.01
413 414 2.836981 CCTCTCTCCATCAGTTTGGACT 59.163 50.000 0.00 0.00 40.90 3.85
414 415 2.679349 GCCTCTCTCCATCAGTTTGGAC 60.679 54.545 0.00 0.00 40.90 4.02
415 416 1.556911 GCCTCTCTCCATCAGTTTGGA 59.443 52.381 0.00 0.00 43.56 3.53
416 417 1.741732 CGCCTCTCTCCATCAGTTTGG 60.742 57.143 0.00 0.00 38.18 3.28
417 418 1.649664 CGCCTCTCTCCATCAGTTTG 58.350 55.000 0.00 0.00 0.00 2.93
418 419 0.539051 CCGCCTCTCTCCATCAGTTT 59.461 55.000 0.00 0.00 0.00 2.66
419 420 1.333636 CCCGCCTCTCTCCATCAGTT 61.334 60.000 0.00 0.00 0.00 3.16
420 421 1.760086 CCCGCCTCTCTCCATCAGT 60.760 63.158 0.00 0.00 0.00 3.41
421 422 3.136750 CCCGCCTCTCTCCATCAG 58.863 66.667 0.00 0.00 0.00 2.90
422 423 3.157252 GCCCGCCTCTCTCCATCA 61.157 66.667 0.00 0.00 0.00 3.07
423 424 2.049627 ATTGCCCGCCTCTCTCCATC 62.050 60.000 0.00 0.00 0.00 3.51
424 425 0.764369 TATTGCCCGCCTCTCTCCAT 60.764 55.000 0.00 0.00 0.00 3.41
425 426 0.764369 ATATTGCCCGCCTCTCTCCA 60.764 55.000 0.00 0.00 0.00 3.86
426 427 1.066787 GTATATTGCCCGCCTCTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
427 428 1.896465 AGTATATTGCCCGCCTCTCTC 59.104 52.381 0.00 0.00 0.00 3.20
428 429 2.016905 AGTATATTGCCCGCCTCTCT 57.983 50.000 0.00 0.00 0.00 3.10
429 430 2.037251 TGAAGTATATTGCCCGCCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
430 431 2.047061 TGAAGTATATTGCCCGCCTCT 58.953 47.619 0.00 0.00 0.00 3.69
431 432 2.543777 TGAAGTATATTGCCCGCCTC 57.456 50.000 0.00 0.00 0.00 4.70
432 433 2.092646 TGTTGAAGTATATTGCCCGCCT 60.093 45.455 0.00 0.00 0.00 5.52
433 434 2.290641 CTGTTGAAGTATATTGCCCGCC 59.709 50.000 0.00 0.00 0.00 6.13
434 435 2.943033 ACTGTTGAAGTATATTGCCCGC 59.057 45.455 0.00 0.00 37.36 6.13
435 436 6.658831 CATAACTGTTGAAGTATATTGCCCG 58.341 40.000 2.69 0.00 38.56 6.13
436 437 6.039270 TGCATAACTGTTGAAGTATATTGCCC 59.961 38.462 2.69 0.00 38.56 5.36
437 438 7.026631 TGCATAACTGTTGAAGTATATTGCC 57.973 36.000 2.69 0.00 38.56 4.52
438 439 7.166473 GCTTGCATAACTGTTGAAGTATATTGC 59.834 37.037 2.69 0.00 38.56 3.56
439 440 8.400947 AGCTTGCATAACTGTTGAAGTATATTG 58.599 33.333 2.69 0.00 38.56 1.90
440 441 8.511604 AGCTTGCATAACTGTTGAAGTATATT 57.488 30.769 2.69 0.00 38.56 1.28
441 442 7.227512 GGAGCTTGCATAACTGTTGAAGTATAT 59.772 37.037 2.69 0.00 38.56 0.86
442 443 6.538742 GGAGCTTGCATAACTGTTGAAGTATA 59.461 38.462 2.69 0.00 38.56 1.47
443 444 5.355350 GGAGCTTGCATAACTGTTGAAGTAT 59.645 40.000 2.69 0.00 38.56 2.12
444 445 4.695455 GGAGCTTGCATAACTGTTGAAGTA 59.305 41.667 2.69 0.00 38.56 2.24
445 446 3.503748 GGAGCTTGCATAACTGTTGAAGT 59.496 43.478 2.69 0.00 42.60 3.01
446 447 3.755378 AGGAGCTTGCATAACTGTTGAAG 59.245 43.478 2.69 1.88 0.00 3.02
447 448 3.754965 AGGAGCTTGCATAACTGTTGAA 58.245 40.909 2.69 0.00 0.00 2.69
448 449 3.423539 AGGAGCTTGCATAACTGTTGA 57.576 42.857 2.69 0.00 0.00 3.18
449 450 3.425359 CGAAGGAGCTTGCATAACTGTTG 60.425 47.826 2.69 0.00 0.00 3.33
450 451 2.744202 CGAAGGAGCTTGCATAACTGTT 59.256 45.455 0.00 0.00 0.00 3.16
451 452 2.289694 ACGAAGGAGCTTGCATAACTGT 60.290 45.455 0.00 0.00 0.00 3.55
452 453 2.349886 GACGAAGGAGCTTGCATAACTG 59.650 50.000 0.00 0.00 0.00 3.16
453 454 2.028112 TGACGAAGGAGCTTGCATAACT 60.028 45.455 0.00 0.00 0.00 2.24
454 455 2.346803 TGACGAAGGAGCTTGCATAAC 58.653 47.619 0.00 0.00 0.00 1.89
455 456 2.760634 TGACGAAGGAGCTTGCATAA 57.239 45.000 0.00 0.00 0.00 1.90
456 457 2.168313 TCATGACGAAGGAGCTTGCATA 59.832 45.455 0.00 0.00 0.00 3.14
457 458 1.065926 TCATGACGAAGGAGCTTGCAT 60.066 47.619 0.00 0.00 0.00 3.96
458 459 0.321346 TCATGACGAAGGAGCTTGCA 59.679 50.000 0.00 0.00 0.00 4.08
459 460 0.723981 GTCATGACGAAGGAGCTTGC 59.276 55.000 10.69 0.00 0.00 4.01
460 461 2.376808 AGTCATGACGAAGGAGCTTG 57.623 50.000 19.85 0.00 36.20 4.01
461 462 3.007398 AGAAAGTCATGACGAAGGAGCTT 59.993 43.478 19.85 3.65 36.20 3.74
462 463 2.564947 AGAAAGTCATGACGAAGGAGCT 59.435 45.455 19.85 8.93 36.20 4.09
463 464 2.926838 GAGAAAGTCATGACGAAGGAGC 59.073 50.000 19.85 6.93 36.20 4.70
464 465 4.172505 CTGAGAAAGTCATGACGAAGGAG 58.827 47.826 19.85 9.32 33.51 3.69
465 466 3.574396 ACTGAGAAAGTCATGACGAAGGA 59.426 43.478 19.85 3.62 31.64 3.36
466 467 3.919216 ACTGAGAAAGTCATGACGAAGG 58.081 45.455 19.85 10.08 31.64 3.46
477 478 4.561105 GATGAAAGACGGACTGAGAAAGT 58.439 43.478 0.00 0.00 43.85 2.66
478 479 3.929610 GGATGAAAGACGGACTGAGAAAG 59.070 47.826 0.00 0.00 0.00 2.62
479 480 3.614150 CGGATGAAAGACGGACTGAGAAA 60.614 47.826 0.00 0.00 0.00 2.52
480 481 2.094700 CGGATGAAAGACGGACTGAGAA 60.095 50.000 0.00 0.00 0.00 2.87
481 482 1.472878 CGGATGAAAGACGGACTGAGA 59.527 52.381 0.00 0.00 0.00 3.27
482 483 1.914634 CGGATGAAAGACGGACTGAG 58.085 55.000 0.00 0.00 0.00 3.35
483 484 0.108804 GCGGATGAAAGACGGACTGA 60.109 55.000 0.00 0.00 0.00 3.41
484 485 1.084370 GGCGGATGAAAGACGGACTG 61.084 60.000 0.00 0.00 0.00 3.51
485 486 1.218316 GGCGGATGAAAGACGGACT 59.782 57.895 0.00 0.00 0.00 3.85
486 487 2.165301 CGGCGGATGAAAGACGGAC 61.165 63.158 0.00 0.00 34.81 4.79
487 488 2.183300 CGGCGGATGAAAGACGGA 59.817 61.111 0.00 0.00 34.81 4.69
488 489 3.564027 GCGGCGGATGAAAGACGG 61.564 66.667 9.78 0.00 39.66 4.79
489 490 3.913573 CGCGGCGGATGAAAGACG 61.914 66.667 15.84 0.00 42.67 4.18
490 491 2.799540 GACGCGGCGGATGAAAGAC 61.800 63.158 27.37 2.68 0.00 3.01
491 492 2.508439 GACGCGGCGGATGAAAGA 60.508 61.111 27.37 0.00 0.00 2.52
492 493 2.813474 TGACGCGGCGGATGAAAG 60.813 61.111 27.37 0.00 0.00 2.62
493 494 3.115892 GTGACGCGGCGGATGAAA 61.116 61.111 27.37 2.11 0.00 2.69
505 506 2.358125 TTGCCGTGATGGGTGACG 60.358 61.111 0.00 0.00 38.63 4.35
506 507 0.960364 ATGTTGCCGTGATGGGTGAC 60.960 55.000 0.00 0.00 38.63 3.67
507 508 0.615850 TATGTTGCCGTGATGGGTGA 59.384 50.000 0.00 0.00 38.63 4.02
508 509 1.016627 CTATGTTGCCGTGATGGGTG 58.983 55.000 0.00 0.00 38.63 4.61
509 510 0.618458 ACTATGTTGCCGTGATGGGT 59.382 50.000 0.00 0.00 38.63 4.51
510 511 1.016627 CACTATGTTGCCGTGATGGG 58.983 55.000 0.00 0.00 38.63 4.00
511 512 0.378257 GCACTATGTTGCCGTGATGG 59.622 55.000 0.00 0.00 42.50 3.51
512 513 3.903876 GCACTATGTTGCCGTGATG 57.096 52.632 0.00 0.00 36.42 3.07
519 520 1.669795 GGCACAAAGGCACTATGTTGC 60.670 52.381 0.00 0.00 38.49 4.17
520 521 2.352503 GGCACAAAGGCACTATGTTG 57.647 50.000 0.00 0.00 38.49 3.33
529 530 3.435186 GCGAGGAGGCACAAAGGC 61.435 66.667 0.00 0.00 44.61 4.35
530 531 2.747855 GGCGAGGAGGCACAAAGG 60.748 66.667 0.00 0.00 45.92 3.11
538 539 1.830408 CTGGAGGTAGGCGAGGAGG 60.830 68.421 0.00 0.00 0.00 4.30
539 540 1.104577 GTCTGGAGGTAGGCGAGGAG 61.105 65.000 0.00 0.00 0.00 3.69
540 541 1.076923 GTCTGGAGGTAGGCGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
541 542 1.379977 TGTCTGGAGGTAGGCGAGG 60.380 63.158 0.00 0.00 0.00 4.63
542 543 0.965866 TGTGTCTGGAGGTAGGCGAG 60.966 60.000 0.00 0.00 0.00 5.03
543 544 1.076014 TGTGTCTGGAGGTAGGCGA 59.924 57.895 0.00 0.00 0.00 5.54
544 545 1.215647 GTGTGTCTGGAGGTAGGCG 59.784 63.158 0.00 0.00 0.00 5.52
545 546 1.215647 CGTGTGTCTGGAGGTAGGC 59.784 63.158 0.00 0.00 0.00 3.93
546 547 1.135139 CATCGTGTGTCTGGAGGTAGG 59.865 57.143 0.00 0.00 0.00 3.18
547 548 2.092323 TCATCGTGTGTCTGGAGGTAG 58.908 52.381 0.00 0.00 0.00 3.18
548 549 2.209690 TCATCGTGTGTCTGGAGGTA 57.790 50.000 0.00 0.00 0.00 3.08
549 550 1.205655 CATCATCGTGTGTCTGGAGGT 59.794 52.381 0.00 0.00 0.00 3.85
550 551 1.931906 CATCATCGTGTGTCTGGAGG 58.068 55.000 0.00 0.00 0.00 4.30
551 552 1.284657 GCATCATCGTGTGTCTGGAG 58.715 55.000 0.00 0.00 0.00 3.86
552 553 0.458370 CGCATCATCGTGTGTCTGGA 60.458 55.000 0.00 0.00 0.00 3.86
553 554 1.423721 CCGCATCATCGTGTGTCTGG 61.424 60.000 0.00 0.00 0.00 3.86
554 555 0.458370 TCCGCATCATCGTGTGTCTG 60.458 55.000 0.00 0.00 0.00 3.51
555 556 0.179127 CTCCGCATCATCGTGTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
556 557 1.148157 CCTCCGCATCATCGTGTGTC 61.148 60.000 0.00 0.00 0.00 3.67
557 558 1.153568 CCTCCGCATCATCGTGTGT 60.154 57.895 0.00 0.00 0.00 3.72
558 559 2.528743 GCCTCCGCATCATCGTGTG 61.529 63.158 0.00 0.00 34.03 3.82
559 560 2.202932 GCCTCCGCATCATCGTGT 60.203 61.111 0.00 0.00 34.03 4.49
560 561 1.953138 GAGCCTCCGCATCATCGTG 60.953 63.158 0.00 0.00 37.52 4.35
561 562 2.419198 GAGCCTCCGCATCATCGT 59.581 61.111 0.00 0.00 37.52 3.73
562 563 2.356793 GGAGCCTCCGCATCATCG 60.357 66.667 0.00 0.00 37.52 3.84
580 581 4.083862 AAAGAGAGGGACGGCGGC 62.084 66.667 13.24 8.60 0.00 6.53
581 582 2.125512 CAAAGAGAGGGACGGCGG 60.126 66.667 13.24 0.00 0.00 6.13
582 583 2.125512 CCAAAGAGAGGGACGGCG 60.126 66.667 4.80 4.80 0.00 6.46
583 584 1.376037 CACCAAAGAGAGGGACGGC 60.376 63.158 0.00 0.00 0.00 5.68
584 585 1.376037 GCACCAAAGAGAGGGACGG 60.376 63.158 0.00 0.00 0.00 4.79
585 586 0.951040 GTGCACCAAAGAGAGGGACG 60.951 60.000 5.22 0.00 0.00 4.79
586 587 0.606673 GGTGCACCAAAGAGAGGGAC 60.607 60.000 31.23 0.00 35.64 4.46
587 588 1.761174 GGTGCACCAAAGAGAGGGA 59.239 57.895 31.23 0.00 35.64 4.20
588 589 1.303643 GGGTGCACCAAAGAGAGGG 60.304 63.158 35.78 0.00 39.85 4.30
589 590 4.404691 GGGTGCACCAAAGAGAGG 57.595 61.111 35.78 0.00 39.85 3.69
598 599 2.741486 TTTACTCGGCTGGGTGCACC 62.741 60.000 28.57 28.57 45.15 5.01
599 600 0.676782 ATTTACTCGGCTGGGTGCAC 60.677 55.000 8.80 8.80 45.15 4.57
600 601 0.906066 TATTTACTCGGCTGGGTGCA 59.094 50.000 8.80 0.00 45.15 4.57
601 602 1.583054 CTATTTACTCGGCTGGGTGC 58.417 55.000 8.80 0.00 41.94 5.01
602 603 1.134521 TGCTATTTACTCGGCTGGGTG 60.135 52.381 8.80 0.00 0.00 4.61
603 604 1.200519 TGCTATTTACTCGGCTGGGT 58.799 50.000 2.17 2.17 0.00 4.51
604 605 2.550830 ATGCTATTTACTCGGCTGGG 57.449 50.000 0.00 0.00 0.00 4.45
605 606 4.083802 GCTTTATGCTATTTACTCGGCTGG 60.084 45.833 0.00 0.00 38.95 4.85
606 607 5.023551 GCTTTATGCTATTTACTCGGCTG 57.976 43.478 0.00 0.00 38.95 4.85
870 871 1.873270 CGAGTGTGTGATCCCGACCA 61.873 60.000 0.00 0.00 0.00 4.02
956 975 2.125512 GCCTCGAAGACGGCATGT 60.126 61.111 8.45 0.00 45.58 3.21
1155 1174 2.030717 TCACACACACAACAACAACACC 60.031 45.455 0.00 0.00 0.00 4.16
1259 1292 7.911130 TTCATTAAATCCCCAAATCAGCATA 57.089 32.000 0.00 0.00 0.00 3.14
1284 1317 7.611467 ACTCAATACCAGAATCAACTTGCATTA 59.389 33.333 0.00 0.00 0.00 1.90
1286 1319 5.948162 ACTCAATACCAGAATCAACTTGCAT 59.052 36.000 0.00 0.00 0.00 3.96
1384 1418 1.283793 CAAGCTCAAGTTGGCCACG 59.716 57.895 3.88 0.00 0.00 4.94
1633 1667 7.148540 CCATTTTCCTGCATTTGTAAATGTGAG 60.149 37.037 16.21 12.55 45.77 3.51
1701 1735 6.017934 GCACAAACATCTCTGAAGAACAGTTA 60.018 38.462 0.00 0.00 45.86 2.24
1753 1787 3.203487 TGTCCTGTACCCTTCCAAAGTTT 59.797 43.478 0.00 0.00 0.00 2.66
1975 2009 1.561643 ACATGGCTTTCTCCTCGAGA 58.438 50.000 15.71 0.00 36.86 4.04
1978 2012 1.089920 CCAACATGGCTTTCTCCTCG 58.910 55.000 0.00 0.00 0.00 4.63
2026 2060 3.314553 CAAAATGCACCTCTGCTCTTTG 58.685 45.455 0.00 1.14 44.57 2.77
2060 2094 6.426328 GCCTTCCTAGTGTTCTTGATGATATG 59.574 42.308 0.00 0.00 0.00 1.78
2186 2220 4.460731 GGCCTTGATTTGCTCTAACTTCTT 59.539 41.667 0.00 0.00 0.00 2.52
2418 2452 9.003658 CCATTTCAACTACTTAATAGCATAGGG 57.996 37.037 0.00 0.00 33.73 3.53
2437 2471 8.884323 ACTTAATAGCATAGGAGATCCATTTCA 58.116 33.333 0.92 0.00 38.89 2.69
2573 2637 0.108019 GGGATTGGGGTTAGTAGGCG 59.892 60.000 0.00 0.00 0.00 5.52
2601 2665 4.354087 GTGGGGAGGGGTTTATATTGAGAT 59.646 45.833 0.00 0.00 0.00 2.75
2675 2739 1.806496 CCCATGTCAGGGTCCATCTA 58.194 55.000 2.29 0.00 44.24 1.98
2695 2760 3.312890 CCCCTCTTCCTCTGTGACATAT 58.687 50.000 0.00 0.00 0.00 1.78
2696 2761 2.626950 CCCCCTCTTCCTCTGTGACATA 60.627 54.545 0.00 0.00 0.00 2.29
2744 2809 0.614415 CTCCTCCTCCTCTGTGCTGT 60.614 60.000 0.00 0.00 0.00 4.40
2824 2898 2.557056 CAGTACCTTGTTGGAGAGTCGA 59.443 50.000 0.00 0.00 39.71 4.20
2853 2927 4.815308 CCAGCTCTAGTTCTTCATCATTGG 59.185 45.833 0.00 0.00 0.00 3.16
2890 2964 4.903149 TCTGGATAAATGACCTTCCCCTA 58.097 43.478 0.00 0.00 0.00 3.53
2905 2979 3.597182 TGCCCACCTAATGATCTGGATA 58.403 45.455 0.00 0.00 0.00 2.59
2953 3027 2.094675 CATTTGGTCCTAGTTGCTGGG 58.905 52.381 0.00 0.00 33.15 4.45
2978 3052 2.029020 AGTCATAGCGCTCAAAGACACA 60.029 45.455 16.34 0.00 0.00 3.72
2981 3055 2.881074 TCAGTCATAGCGCTCAAAGAC 58.119 47.619 16.34 17.57 0.00 3.01
3038 3148 8.194104 TCTCTCTCAAATTGACTTACAGATAGC 58.806 37.037 0.00 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.