AutoCloner

Multiple sequence alignment - TraesCS1B01G340200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G340200	chr1B	100.000	2721	0	0	1	2721	568007598	568004878	0.000000e+00	5025
1	TraesCS1B01G340200	chr1B	83.407	1362	153	50	715	2036	567980120	567978792	0.000000e+00	1195
2	TraesCS1B01G340200	chr1D	89.919	1845	109	36	274	2070	420380698	420378883	0.000000e+00	2305
3	TraesCS1B01G340200	chr1D	82.300	1661	171	68	416	2012	420239319	420237718	0.000000e+00	1325
4	TraesCS1B01G340200	chr1D	97.008	635	19	0	2087	2721	1855418	1856052	0.000000e+00	1068
5	TraesCS1B01G340200	chr1D	88.321	274	24	5	1	267	420381021	420380749	3.380000e-84	322
6	TraesCS1B01G340200	chr1A	92.246	1380	69	20	709	2070	516740621	516739262	0.000000e+00	1921
7	TraesCS1B01G340200	chr1A	84.729	1349	141	44	737	2036	516727636	516726304	0.000000e+00	1290
8	TraesCS1B01G340200	chr1A	93.850	374	13	4	303	668	516741261	516740890	3.060000e-154	555
9	TraesCS1B01G340200	chr7A	98.273	637	10	1	2086	2721	596378734	596379370	0.000000e+00	1114
10	TraesCS1B01G340200	chr4A	97.953	635	12	1	2088	2721	731600073	731599439	0.000000e+00	1099
11	TraesCS1B01G340200	chr3B	92.835	642	33	8	2089	2721	742143901	742143264	0.000000e+00	918
12	TraesCS1B01G340200	chr3B	79.211	558	84	21	960	1501	667779416	667778875	2.580000e-95	359
13	TraesCS1B01G340200	chr5A	92.767	636	40	5	2087	2721	3388781	3389411	0.000000e+00	915
14	TraesCS1B01G340200	chr4D	92.691	643	31	5	2086	2721	268081147	268081780	0.000000e+00	913
15	TraesCS1B01G340200	chr6B	92.344	640	41	6	2084	2721	622016186	622016819	0.000000e+00	904
16	TraesCS1B01G340200	chr6B	91.875	640	44	6	2084	2721	621580988	621580355	0.000000e+00	887
17	TraesCS1B01G340200	chr2A	92.151	637	45	4	2085	2721	622864799	622864168	0.000000e+00	894
18	TraesCS1B01G340200	chr3D	80.851	470	69	9	1041	1501	506061865	506061408	1.550000e-92	350
19	TraesCS1B01G340200	chr3A	79.053	549	84	19	967	1501	644705187	644704656	5.580000e-92	348

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G340200	chr1B	568004878	568007598	2720	True	5025.0	5025	100.000	1	2721	1	chr1B.!!$R2	2720
1	TraesCS1B01G340200	chr1B	567978792	567980120	1328	True	1195.0	1195	83.407	715	2036	1	chr1B.!!$R1	1321
2	TraesCS1B01G340200	chr1D	420237718	420239319	1601	True	1325.0	1325	82.300	416	2012	1	chr1D.!!$R1	1596
3	TraesCS1B01G340200	chr1D	420378883	420381021	2138	True	1313.5	2305	89.120	1	2070	2	chr1D.!!$R2	2069
4	TraesCS1B01G340200	chr1D	1855418	1856052	634	False	1068.0	1068	97.008	2087	2721	1	chr1D.!!$F1	634
5	TraesCS1B01G340200	chr1A	516726304	516727636	1332	True	1290.0	1290	84.729	737	2036	1	chr1A.!!$R1	1299
6	TraesCS1B01G340200	chr1A	516739262	516741261	1999	True	1238.0	1921	93.048	303	2070	2	chr1A.!!$R2	1767
7	TraesCS1B01G340200	chr7A	596378734	596379370	636	False	1114.0	1114	98.273	2086	2721	1	chr7A.!!$F1	635
8	TraesCS1B01G340200	chr4A	731599439	731600073	634	True	1099.0	1099	97.953	2088	2721	1	chr4A.!!$R1	633
9	TraesCS1B01G340200	chr3B	742143264	742143901	637	True	918.0	918	92.835	2089	2721	1	chr3B.!!$R2	632
10	TraesCS1B01G340200	chr3B	667778875	667779416	541	True	359.0	359	79.211	960	1501	1	chr3B.!!$R1	541
11	TraesCS1B01G340200	chr5A	3388781	3389411	630	False	915.0	915	92.767	2087	2721	1	chr5A.!!$F1	634
12	TraesCS1B01G340200	chr4D	268081147	268081780	633	False	913.0	913	92.691	2086	2721	1	chr4D.!!$F1	635
13	TraesCS1B01G340200	chr6B	622016186	622016819	633	False	904.0	904	92.344	2084	2721	1	chr6B.!!$F1	637
14	TraesCS1B01G340200	chr6B	621580355	621580988	633	True	887.0	887	91.875	2084	2721	1	chr6B.!!$R1	637
15	TraesCS1B01G340200	chr2A	622864168	622864799	631	True	894.0	894	92.151	2085	2721	1	chr2A.!!$R1	636
16	TraesCS1B01G340200	chr3A	644704656	644705187	531	True	348.0	348	79.053	967	1501	1	chr3A.!!$R1	534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
486	550	0.396556	ATGCATTGCTCTCCATGCCA	60.397	50.0	10.49	0.0	39.12	4.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1947	2330	0.179148	ACAACAGCGATGCATGCATG	60.179	50.0	36.73	25.49	36.7	4.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
79	80	3.754965	AGCAGCAGATTTTGTCCACTAA	58.245	40.909	0.00	0.00	0.00	2.24
119	120	6.215121	TCTACCTTGTTGAAACATGCATTTG	58.785	36.000	0.00	0.00	38.95	2.32
120	121	4.128643	ACCTTGTTGAAACATGCATTTGG	58.871	39.130	0.00	0.00	38.95	3.28
122	123	5.163364	ACCTTGTTGAAACATGCATTTGGTA	60.163	36.000	0.00	0.00	38.95	3.25
123	124	5.933463	CCTTGTTGAAACATGCATTTGGTAT	59.067	36.000	0.00	0.00	38.95	2.73
124	125	6.128499	CCTTGTTGAAACATGCATTTGGTATG	60.128	38.462	0.00	0.00	44.27	2.39
125	126	4.689812	TGTTGAAACATGCATTTGGTATGC	59.310	37.500	0.00	2.90	42.69	3.14
148	153	7.552459	TGCCTAATTTAAGCTTAAATTGTCCC	58.448	34.615	41.40	31.34	46.83	4.46
152	157	5.400066	TTTAAGCTTAAATTGTCCCTGCC	57.600	39.130	24.42	0.00	0.00	4.85
168	173	3.826157	CCCTGCCTTTTATGAAGACAACA	59.174	43.478	0.00	0.00	0.00	3.33
215	222	8.147704	TGAAAAGATATAGACACCGCATTATGA	58.852	33.333	0.00	0.00	0.00	2.15
238	245	0.751277	CTCTGTGTTTGCCCACACCA	60.751	55.000	11.83	0.22	45.67	4.17
253	260	1.075525	ACCAGCCACGGCCTCTATA	60.076	57.895	3.95	0.00	43.17	1.31
258	265	0.679505	GCCACGGCCTCTATATGACA	59.320	55.000	0.00	0.00	34.56	3.58
268	289	4.380023	GCCTCTATATGACAGATGACGACC	60.380	50.000	0.00	0.00	0.00	4.79
281	302	0.889306	GACGACCCTGCTAGAGTTGT	59.111	55.000	0.00	0.00	0.00	3.32
286	307	3.330267	GACCCTGCTAGAGTTGTTCTTG	58.670	50.000	0.00	0.00	37.36	3.02
287	308	2.039084	ACCCTGCTAGAGTTGTTCTTGG	59.961	50.000	0.00	0.00	37.36	3.61
297	347	2.369532	AGTTGTTCTTGGCCATTGCAAT	59.630	40.909	6.09	5.99	40.13	3.56
315	365	7.759489	TTGCAATACTCCTAACAAAACTGAT	57.241	32.000	0.00	0.00	0.00	2.90
436	493	2.728007	AGGATATCCGATGCGAGATGA	58.272	47.619	16.21	0.00	42.08	2.92
461	525	2.223852	TGCCATTGCCATTGAATGATCG	60.224	45.455	6.76	0.00	33.36	3.69
486	550	0.396556	ATGCATTGCTCTCCATGCCA	60.397	50.000	10.49	0.00	39.12	4.92
540	604	2.398498	ACATCTCGCATCATAGTTCGC	58.602	47.619	0.00	0.00	0.00	4.70
628	692	4.915667	CGTTTCTCAGAGTTCACAACGATA	59.084	41.667	1.53	0.00	38.18	2.92
775	1077	2.287393	GCATGTCTCATGCAATGCAA	57.713	45.000	23.86	0.00	46.21	4.08
776	1078	2.193447	GCATGTCTCATGCAATGCAAG	58.807	47.619	23.86	8.34	46.21	4.01
777	1079	2.193447	CATGTCTCATGCAATGCAAGC	58.807	47.619	13.45	7.49	46.21	4.01
778	1080	1.249407	TGTCTCATGCAATGCAAGCA	58.751	45.000	13.45	17.90	46.21	3.91
779	1081	1.068125	TGTCTCATGCAATGCAAGCAC	60.068	47.619	13.45	8.59	46.21	4.40
780	1082	1.201647	GTCTCATGCAATGCAAGCACT	59.798	47.619	13.45	6.51	46.21	4.40
781	1083	2.421073	GTCTCATGCAATGCAAGCACTA	59.579	45.455	13.45	9.22	46.21	2.74
782	1084	3.083293	TCTCATGCAATGCAAGCACTAA	58.917	40.909	13.45	7.10	46.21	2.24
783	1085	3.697542	TCTCATGCAATGCAAGCACTAAT	59.302	39.130	13.45	1.42	46.21	1.73
786	1088	5.584442	TCATGCAATGCAAGCACTAATTAG	58.416	37.500	13.45	11.05	46.21	1.73
863	1182	5.860182	GGCATCATATCACATGCATTAACAC	59.140	40.000	0.00	0.00	46.19	3.32
868	1187	6.758886	TCATATCACATGCATTAACACGTACA	59.241	34.615	0.00	0.00	0.00	2.90
895	1221	5.350365	CCTCGATCAGGTTAATTTCGTTGAA	59.650	40.000	0.00	0.00	37.53	2.69
896	1222	6.037172	CCTCGATCAGGTTAATTTCGTTGAAT	59.963	38.462	0.00	0.00	37.53	2.57
1170	1531	1.903404	GGAGTGCCCCAACAACCTG	60.903	63.158	0.00	0.00	0.00	4.00
1560	1927	3.304458	GGGTTTGCACTAACAACTACTGC	60.304	47.826	3.80	0.00	0.00	4.40
1590	1957	2.746375	GGGATCCTGTGGCATCGGT	61.746	63.158	12.58	0.00	0.00	4.69
1593	1960	2.666596	GATCCTGTGGCATCGGTCCC	62.667	65.000	0.00	0.00	0.00	4.46
1689	2062	4.341806	ACTCTTCTCGCAGAATGATGATCT	59.658	41.667	0.00	0.00	39.69	2.75
1690	2063	5.163426	ACTCTTCTCGCAGAATGATGATCTT	60.163	40.000	0.00	0.00	39.69	2.40
1691	2064	5.048507	TCTTCTCGCAGAATGATGATCTTG	58.951	41.667	0.00	0.00	39.69	3.02
1694	2067	4.038402	TCTCGCAGAATGATGATCTTGCTA	59.962	41.667	0.00	0.00	39.69	3.49
1699	2075	5.241064	GCAGAATGATGATCTTGCTAATGGT	59.759	40.000	0.00	0.00	39.69	3.55
1732	2108	2.277084	ACGAATAATCCGTGGCAGTTC	58.723	47.619	0.00	0.00	38.97	3.01
1748	2124	0.952010	GTTCCATTGCCACGTACGGT	60.952	55.000	21.06	2.13	0.00	4.83
1865	2245	8.615878	TGTAGTACATGCATGGAAATATTACC	57.384	34.615	29.41	7.68	0.00	2.85
1867	2247	6.530120	AGTACATGCATGGAAATATTACCGA	58.470	36.000	29.41	0.00	0.00	4.69
1875	2256	6.073548	GCATGGAAATATTACCGAGAGAAGTG	60.074	42.308	0.00	0.00	0.00	3.16
1876	2257	6.785337	TGGAAATATTACCGAGAGAAGTGA	57.215	37.500	0.00	0.00	0.00	3.41
1892	2273	6.098838	AGAGAAGTGATGTGTGGCAATATAGA	59.901	38.462	0.00	0.00	0.00	1.98
1919	2302	7.537306	GTGTACTATTGTTGCCACAAATTAGTG	59.463	37.037	19.62	6.73	46.17	2.74
1936	2319	6.743575	ATTAGTGTTCTTGTTATGACCTGC	57.256	37.500	0.00	0.00	0.00	4.85
1988	2371	7.160547	TGTAATGTTGGAGTACTTCGTGATA	57.839	36.000	0.00	0.00	0.00	2.15
2054	2437	7.170320	CCTTCGCTCAGTAAAAGTAAAAGTGTA	59.830	37.037	0.00	0.00	0.00	2.90
2075	2458	8.765219	AGTGTAAGTCTTGCATAATATAAAGCG	58.235	33.333	6.65	0.00	0.00	4.68
2076	2459	8.009974	GTGTAAGTCTTGCATAATATAAAGCGG	58.990	37.037	6.65	0.00	0.00	5.52
2077	2460	6.560253	AAGTCTTGCATAATATAAAGCGGG	57.440	37.500	0.00	0.00	0.00	6.13
2078	2461	5.003804	AGTCTTGCATAATATAAAGCGGGG	58.996	41.667	0.00	0.00	0.00	5.73
2079	2462	5.001232	GTCTTGCATAATATAAAGCGGGGA	58.999	41.667	0.00	0.00	0.00	4.81
2080	2463	5.472137	GTCTTGCATAATATAAAGCGGGGAA	59.528	40.000	0.00	0.00	0.00	3.97
2081	2464	6.016610	GTCTTGCATAATATAAAGCGGGGAAA	60.017	38.462	0.00	0.00	0.00	3.13
2082	2465	5.699097	TGCATAATATAAAGCGGGGAAAC	57.301	39.130	0.00	0.00	0.00	2.78
2454	2839	0.378610	GTTTATCTTCCAGCTGGCGC	59.621	55.000	28.91	0.00	34.44	6.53

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
59	60	4.708726	ATTAGTGGACAAAATCTGCTGC	57.291	40.909	0.00	0.00	0.00	5.25
60	61	8.668510	ACTATATTAGTGGACAAAATCTGCTG	57.331	34.615	0.00	0.00	37.69	4.41
96	97	5.406175	CCAAATGCATGTTTCAACAAGGTAG	59.594	40.000	0.00	0.00	43.03	3.18
101	102	5.178996	GCATACCAAATGCATGTTTCAACAA	59.821	36.000	0.00	0.00	44.00	2.83
122	123	8.204160	GGGACAATTTAAGCTTAAATTAGGCAT	58.796	33.333	38.05	26.58	46.16	4.40
123	124	7.398904	AGGGACAATTTAAGCTTAAATTAGGCA	59.601	33.333	38.05	18.23	46.16	4.75
124	125	7.706607	CAGGGACAATTTAAGCTTAAATTAGGC	59.293	37.037	38.05	33.08	46.16	3.93
125	126	7.706607	GCAGGGACAATTTAAGCTTAAATTAGG	59.293	37.037	38.05	31.52	46.16	2.69
147	152	5.221224	TGTTGTTGTCTTCATAAAAGGCAGG	60.221	40.000	0.00	0.00	32.98	4.85
148	153	5.830912	TGTTGTTGTCTTCATAAAAGGCAG	58.169	37.500	0.00	0.00	32.98	4.85
198	205	5.244851	AGAGTCATCATAATGCGGTGTCTAT	59.755	40.000	0.00	0.00	32.58	1.98
200	207	3.386078	AGAGTCATCATAATGCGGTGTCT	59.614	43.478	0.00	0.00	32.58	3.41
201	208	3.492383	CAGAGTCATCATAATGCGGTGTC	59.508	47.826	0.00	0.00	32.58	3.67
203	210	3.246936	CACAGAGTCATCATAATGCGGTG	59.753	47.826	0.00	0.00	32.58	4.94
204	211	3.118629	ACACAGAGTCATCATAATGCGGT	60.119	43.478	0.00	0.00	32.58	5.68
215	222	1.133823	TGTGGGCAAACACAGAGTCAT	60.134	47.619	4.29	0.00	45.70	3.06
238	245	0.969894	GTCATATAGAGGCCGTGGCT	59.030	55.000	11.25	0.00	42.48	4.75
245	252	4.380023	GGTCGTCATCTGTCATATAGAGGC	60.380	50.000	0.00	0.00	0.00	4.70
253	260	0.176680	GCAGGGTCGTCATCTGTCAT	59.823	55.000	0.00	0.00	0.00	3.06
258	265	1.064314	ACTCTAGCAGGGTCGTCATCT	60.064	52.381	0.00	0.00	0.00	2.90
268	289	2.079925	GCCAAGAACAACTCTAGCAGG	58.920	52.381	0.00	0.00	34.90	4.85
281	302	2.760092	GGAGTATTGCAATGGCCAAGAA	59.240	45.455	22.27	0.00	40.13	2.52
286	307	3.287222	TGTTAGGAGTATTGCAATGGCC	58.713	45.455	22.27	18.17	40.13	5.36
287	308	4.981806	TTGTTAGGAGTATTGCAATGGC	57.018	40.909	22.27	13.99	41.68	4.40
315	365	8.865001	CAAAAAGATGACCAAACGTAAAAGAAA	58.135	29.630	0.00	0.00	0.00	2.52
323	375	5.317733	TCAACAAAAAGATGACCAAACGT	57.682	34.783	0.00	0.00	0.00	3.99
379	435	8.896320	TTTTGCGGTATGAGAAATTAGCTATA	57.104	30.769	0.00	0.00	0.00	1.31
380	436	7.801716	TTTTGCGGTATGAGAAATTAGCTAT	57.198	32.000	0.00	0.00	0.00	2.97
408	465	3.096092	GCATCGGATATCCTTCTCTCCT	58.904	50.000	19.61	0.00	0.00	3.69
461	525	0.248377	GGAGAGCAATGCATTCACGC	60.248	55.000	9.53	10.56	0.00	5.34
486	550	3.049074	TGCGCGTGACATGCATGT	61.049	55.556	31.82	31.82	45.16	3.21
540	604	5.852738	TCTCTTTTCTTTTCATGAGAGCG	57.147	39.130	0.00	0.00	32.67	5.03
628	692	5.414360	CGTGCATATATAGCATCTGACCTT	58.586	41.667	11.36	0.00	44.79	3.50
712	799	8.820831	AGAGTACTGTAGTTAGGACTAGTACAA	58.179	37.037	8.10	0.00	43.79	2.41
729	1030	1.607628	CGCGGGCTATTAGAGTACTGT	59.392	52.381	0.00	0.00	0.00	3.55
730	1031	1.666311	GCGCGGGCTATTAGAGTACTG	60.666	57.143	18.33	0.00	35.83	2.74
731	1032	0.597072	GCGCGGGCTATTAGAGTACT	59.403	55.000	18.33	0.00	35.83	2.73
771	1073	7.064609	GTGTATGAAGTCTAATTAGTGCTTGCA	59.935	37.037	21.01	18.30	0.00	4.08
772	1074	7.064609	TGTGTATGAAGTCTAATTAGTGCTTGC	59.935	37.037	21.01	15.26	0.00	4.01
773	1075	8.479313	TGTGTATGAAGTCTAATTAGTGCTTG	57.521	34.615	21.01	0.00	0.00	4.01
774	1076	9.155975	CTTGTGTATGAAGTCTAATTAGTGCTT	57.844	33.333	18.10	18.10	0.00	3.91
775	1077	8.314751	ACTTGTGTATGAAGTCTAATTAGTGCT	58.685	33.333	12.19	8.96	0.00	4.40
776	1078	8.480643	ACTTGTGTATGAAGTCTAATTAGTGC	57.519	34.615	12.19	6.97	0.00	4.40
778	1080	9.784680	CGTACTTGTGTATGAAGTCTAATTAGT	57.215	33.333	12.19	0.00	37.76	2.24
779	1081	9.784680	ACGTACTTGTGTATGAAGTCTAATTAG	57.215	33.333	6.11	6.11	38.63	1.73
781	1083	9.784680	CTACGTACTTGTGTATGAAGTCTAATT	57.215	33.333	0.00	0.00	38.63	1.40
782	1084	8.954350	ACTACGTACTTGTGTATGAAGTCTAAT	58.046	33.333	0.00	0.00	38.63	1.73
783	1085	8.327941	ACTACGTACTTGTGTATGAAGTCTAA	57.672	34.615	0.00	0.00	38.63	2.10
786	1088	5.731723	CGACTACGTACTTGTGTATGAAGTC	59.268	44.000	0.00	0.00	38.63	3.01
863	1182	1.380524	ACCTGATCGAGGAGTGTACG	58.619	55.000	15.51	0.00	46.33	3.67
868	1187	4.159879	ACGAAATTAACCTGATCGAGGAGT	59.840	41.667	15.51	7.44	46.33	3.85
895	1221	0.535335	AGACACGTGTTCGCCCATAT	59.465	50.000	24.26	0.00	41.18	1.78
896	1222	0.389296	CAGACACGTGTTCGCCCATA	60.389	55.000	24.26	0.00	41.18	2.74
1170	1531	3.121030	CCGTACTGGCTGCAGCAC	61.121	66.667	37.63	25.87	44.36	4.40
1209	1570	2.359850	CAGCCCTTGCCGCAGTAA	60.360	61.111	0.00	0.00	38.69	2.24
1279	1646	1.826487	GGTTGTTGGGGCACGTCTT	60.826	57.895	0.00	0.00	0.00	3.01
1280	1647	2.203294	GGTTGTTGGGGCACGTCT	60.203	61.111	0.00	0.00	0.00	4.18
1446	1813	2.508663	GAACCGAGGCCGCAGTAC	60.509	66.667	7.44	0.00	0.00	2.73
1560	1927	1.134280	CAGGATCCCCACTTGCTACAG	60.134	57.143	8.55	0.00	33.88	2.74
1654	2027	0.398318	AGAAGAGTGGAGTTGGTGGC	59.602	55.000	0.00	0.00	0.00	5.01
1657	2030	0.318762	GCGAGAAGAGTGGAGTTGGT	59.681	55.000	0.00	0.00	0.00	3.67
1689	2062	5.064198	GTCGTTGCAATACTACCATTAGCAA	59.936	40.000	0.59	0.00	38.07	3.91
1690	2063	4.569162	GTCGTTGCAATACTACCATTAGCA	59.431	41.667	0.59	0.00	0.00	3.49
1691	2064	4.317839	CGTCGTTGCAATACTACCATTAGC	60.318	45.833	0.59	0.00	0.00	3.09
1694	2067	3.852286	TCGTCGTTGCAATACTACCATT	58.148	40.909	0.59	0.00	0.00	3.16
1699	2075	5.400188	CGGATTATTCGTCGTTGCAATACTA	59.600	40.000	0.59	0.00	0.00	1.82
1732	2108	0.594110	AAAACCGTACGTGGCAATGG	59.406	50.000	15.21	0.00	0.00	3.16
1865	2245	1.337167	TGCCACACATCACTTCTCTCG	60.337	52.381	0.00	0.00	0.00	4.04
1867	2247	2.936919	TTGCCACACATCACTTCTCT	57.063	45.000	0.00	0.00	0.00	3.10
1875	2256	6.516718	AGTACACTCTATATTGCCACACATC	58.483	40.000	0.00	0.00	0.00	3.06
1876	2257	6.485830	AGTACACTCTATATTGCCACACAT	57.514	37.500	0.00	0.00	0.00	3.21
1919	2302	4.670227	GACAGCAGGTCATAACAAGAAC	57.330	45.455	3.89	0.00	46.19	3.01
1947	2330	0.179148	ACAACAGCGATGCATGCATG	60.179	50.000	36.73	25.49	36.70	4.06
1988	2371	7.661437	ACACTCATGGTAATATATTGCAACGAT	59.339	33.333	14.46	0.44	0.00	3.73
2054	2437	5.473504	CCCCGCTTTATATTATGCAAGACTT	59.526	40.000	0.00	0.00	0.00	3.01
2076	2459	1.313091	CGCAGCCTAAAGGGTTTCCC	61.313	60.000	0.00	0.00	44.81	3.97
2077	2460	0.608308	ACGCAGCCTAAAGGGTTTCC	60.608	55.000	0.00	0.00	44.81	3.13
2078	2461	1.244816	AACGCAGCCTAAAGGGTTTC	58.755	50.000	0.00	0.00	44.81	2.78
2079	2462	1.699730	AAACGCAGCCTAAAGGGTTT	58.300	45.000	0.00	0.00	44.81	3.27
2080	2463	0.958822	CAAACGCAGCCTAAAGGGTT	59.041	50.000	0.00	0.00	44.81	4.11
2082	2465	1.883021	CCAAACGCAGCCTAAAGGG	59.117	57.895	0.00	0.00	35.18	3.95
2083	2466	1.212751	GCCAAACGCAGCCTAAAGG	59.787	57.895	0.00	0.00	37.47	3.11
2084	2467	1.956043	TGCCAAACGCAGCCTAAAG	59.044	52.632	0.00	0.00	44.64	1.85
2590	2995	9.705103	TCTCCAAAAGGATCAATCAATCTAATT	57.295	29.630	0.00	0.00	0.00	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.