AutoCloner

Multiple sequence alignment - TraesCS1B01G339800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G339800	chr1B	100.000	4796	0	0	1	4796	567716087	567711292	0.000000e+00	8857.0
1	TraesCS1B01G339800	chr7D	93.370	4510	261	17	1	4500	37218897	37214416	0.000000e+00	6637.0
2	TraesCS1B01G339800	chr7D	93.064	4066	250	16	1	4049	36747465	36743415	0.000000e+00	5917.0
3	TraesCS1B01G339800	chr7D	81.900	1442	217	15	1394	2822	36680401	36678991	0.000000e+00	1177.0
4	TraesCS1B01G339800	chr7D	85.121	289	32	7	4508	4794	37214357	37214078	7.860000e-73	285.0
5	TraesCS1B01G339800	chr7D	100.000	29	0	0	895	923	36746538	36746510	2.000000e-03	54.7
6	TraesCS1B01G339800	chr7D	100.000	29	0	0	895	923	37217971	37217943	2.000000e-03	54.7
7	TraesCS1B01G339800	chr4A	92.676	4014	272	15	1	4003	689070821	689066819	0.000000e+00	5764.0
8	TraesCS1B01G339800	chr4A	92.654	4016	265	17	1	4003	689094204	689090206	0.000000e+00	5755.0
9	TraesCS1B01G339800	chr4A	95.034	2819	119	8	1302	4115	688972811	688970009	0.000000e+00	4410.0
10	TraesCS1B01G339800	chr4A	79.493	2921	489	69	1217	4094	686593412	686590559	0.000000e+00	1975.0
11	TraesCS1B01G339800	chr4A	78.789	2923	510	73	1217	4096	686627469	686624614	0.000000e+00	1862.0
12	TraesCS1B01G339800	chr4A	78.264	2627	487	50	1334	3934	688643977	688641409	0.000000e+00	1611.0
13	TraesCS1B01G339800	chr4A	78.873	2272	413	46	1854	4096	686572145	686569912	0.000000e+00	1474.0
14	TraesCS1B01G339800	chr4A	87.298	929	110	6	1	923	688974005	688973079	0.000000e+00	1055.0
15	TraesCS1B01G339800	chr4A	88.854	314	30	5	918	1227	688973113	688972801	9.740000e-102	381.0
16	TraesCS1B01G339800	chr4A	89.565	115	12	0	4386	4500	688969636	688969522	3.870000e-31	147.0
17	TraesCS1B01G339800	chr4A	100.000	32	0	0	4153	4184	688970009	688969978	5.180000e-05	60.2
18	TraesCS1B01G339800	chr7A	91.167	3634	226	41	918	4500	36546031	36542442	0.000000e+00	4844.0
19	TraesCS1B01G339800	chr7A	79.190	2840	492	62	1262	4067	36487993	36485219	0.000000e+00	1879.0
20	TraesCS1B01G339800	chr7A	79.284	2708	453	64	1220	3901	36371751	36369126	0.000000e+00	1794.0
21	TraesCS1B01G339800	chr7A	78.036	2841	522	57	1260	4067	36317547	36314776	0.000000e+00	1696.0
22	TraesCS1B01G339800	chr7A	89.093	926	97	2	1	923	36546921	36545997	0.000000e+00	1147.0
23	TraesCS1B01G339800	chr7A	87.847	288	30	2	4505	4787	36542378	36542091	2.770000e-87	333.0
24	TraesCS1B01G339800	chr7A	73.154	853	178	26	201	1016	36489110	36488272	4.760000e-65	259.0
25	TraesCS1B01G339800	chr7A	74.064	374	71	15	647	1012	36372431	36372076	3.900000e-26	130.0
26	TraesCS1B01G339800	chrUn	88.000	50	0	2	1262	1305	90996318	90996269	2.000000e-03	54.7
27	TraesCS1B01G339800	chrUn	88.000	50	0	2	1262	1305	91103553	91103504	2.000000e-03	54.7
28	TraesCS1B01G339800	chrUn	100.000	29	0	0	1262	1290	135325771	135325799	2.000000e-03	54.7
29	TraesCS1B01G339800	chrUn	100.000	29	0	0	1262	1290	212198514	212198542	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G339800	chr1B	567711292	567716087	4795	True	8857.000000	8857	100.000000	1	4796	1	chr1B.!!$R1	4795
1	TraesCS1B01G339800	chr7D	36743415	36747465	4050	True	2985.850000	5917	96.532000	1	4049	2	chr7D.!!$R2	4048
2	TraesCS1B01G339800	chr7D	37214078	37218897	4819	True	2325.566667	6637	92.830333	1	4794	3	chr7D.!!$R3	4793
3	TraesCS1B01G339800	chr7D	36678991	36680401	1410	True	1177.000000	1177	81.900000	1394	2822	1	chr7D.!!$R1	1428
4	TraesCS1B01G339800	chr4A	689066819	689070821	4002	True	5764.000000	5764	92.676000	1	4003	1	chr4A.!!$R5	4002
5	TraesCS1B01G339800	chr4A	689090206	689094204	3998	True	5755.000000	5755	92.654000	1	4003	1	chr4A.!!$R6	4002
6	TraesCS1B01G339800	chr4A	686590559	686593412	2853	True	1975.000000	1975	79.493000	1217	4094	1	chr4A.!!$R2	2877
7	TraesCS1B01G339800	chr4A	686624614	686627469	2855	True	1862.000000	1862	78.789000	1217	4096	1	chr4A.!!$R3	2879
8	TraesCS1B01G339800	chr4A	688641409	688643977	2568	True	1611.000000	1611	78.264000	1334	3934	1	chr4A.!!$R4	2600
9	TraesCS1B01G339800	chr4A	686569912	686572145	2233	True	1474.000000	1474	78.873000	1854	4096	1	chr4A.!!$R1	2242
10	TraesCS1B01G339800	chr4A	688969522	688974005	4483	True	1210.640000	4410	92.150200	1	4500	5	chr4A.!!$R7	4499
11	TraesCS1B01G339800	chr7A	36542091	36546921	4830	True	2108.000000	4844	89.369000	1	4787	3	chr7A.!!$R4	4786
12	TraesCS1B01G339800	chr7A	36314776	36317547	2771	True	1696.000000	1696	78.036000	1260	4067	1	chr7A.!!$R1	2807
13	TraesCS1B01G339800	chr7A	36485219	36489110	3891	True	1069.000000	1879	76.172000	201	4067	2	chr7A.!!$R3	3866
14	TraesCS1B01G339800	chr7A	36369126	36372431	3305	True	962.000000	1794	76.674000	647	3901	2	chr7A.!!$R2	3254

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
464	471	0.034380	TGTGGGGAAAACGTTGTCCA	60.034	50.000	33.25	20.10	35.44	4.02	F
1404	1668	0.108472	TGCAAGACCAGCTCGAGATG	60.108	55.000	23.51	23.51	0.00	2.90	F
2391	2672	1.066143	CAGCGGTACCTCAAGGACATT	60.066	52.381	10.90	0.00	38.94	2.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2124	2405	3.056250	CACCTATCACACAGCTCTTCACT	60.056	47.826	0.00	0.00	0.00	3.41	R
2540	2821	0.239347	CAAACGCTTCAGCTTCAGGG	59.761	55.000	4.77	4.77	39.32	4.45	R
4363	4774	0.394352	GTGGGTGTGGGATGTGGATC	60.394	60.000	0.00	0.00	0.00	3.36	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	9.812347	AATTTCCATCTGGCTTGTATATATTGA	57.188	29.630	0.00	0.00	34.44	2.57
83	86	5.689383	TCTTGCTACATGGTTGAACTTTC	57.311	39.130	0.00	0.00	0.00	2.62
227	230	6.385033	CGGAGATGAAAAAGAAAAGAGCAAT	58.615	36.000	0.00	0.00	0.00	3.56
323	329	3.274288	GGAGAACATTAGGGTGAAGCTG	58.726	50.000	0.00	0.00	0.00	4.24
347	353	2.029918	TGAATGGATAGAGGATGTCGCG	60.030	50.000	0.00	0.00	0.00	5.87
358	364	1.911293	GATGTCGCGCAACACCACAT	61.911	55.000	1.76	3.75	30.55	3.21
451	458	1.000896	AAGCTTCGGGAATGTGGGG	60.001	57.895	0.00	0.00	0.00	4.96
464	471	0.034380	TGTGGGGAAAACGTTGTCCA	60.034	50.000	33.25	20.10	35.44	4.02
465	472	0.666374	GTGGGGAAAACGTTGTCCAG	59.334	55.000	33.25	0.00	35.44	3.86
577	584	0.443869	CTTCAATCTGCCGAACACCG	59.556	55.000	0.00	0.00	38.18	4.94
595	602	2.436109	GCCCCAGCAACAGGAAGA	59.564	61.111	0.00	0.00	39.53	2.87
703	719	4.508461	TCAAAGCAATGAATGTGGACAG	57.492	40.909	0.00	0.00	0.00	3.51
791	807	2.238646	ACAAATGGATGAAGACCCGCTA	59.761	45.455	0.00	0.00	0.00	4.26
889	908	3.190738	AAGGTGCGCCTGCTACCAA	62.191	57.895	22.03	0.00	46.33	3.67
1019	1256	5.240403	GGCATATGGAAGAAGATGAAGGAAC	59.760	44.000	4.56	0.00	0.00	3.62
1071	1308	3.532102	ACAGATCCTAAGGGAGGTGTTT	58.468	45.455	0.00	0.00	46.76	2.83
1330	1591	7.564793	TGGTATACAAAGTCAGCATTGTATCT	58.435	34.615	12.82	0.00	45.07	1.98
1399	1660	0.656259	CATGATGCAAGACCAGCTCG	59.344	55.000	0.00	0.00	0.00	5.03
1404	1668	0.108472	TGCAAGACCAGCTCGAGATG	60.108	55.000	23.51	23.51	0.00	2.90
2124	2405	2.502130	TGATATTGGTGCTACGGGACAA	59.498	45.455	0.00	0.00	35.41	3.18
2214	2495	1.525619	GTAGAAACACGCCTGTCACAC	59.474	52.381	0.00	0.00	0.00	3.82
2391	2672	1.066143	CAGCGGTACCTCAAGGACATT	60.066	52.381	10.90	0.00	38.94	2.71
2415	2696	3.525537	CAGGACGATGTTACTGCTCAAT	58.474	45.455	0.00	0.00	0.00	2.57
2421	2702	6.480320	GGACGATGTTACTGCTCAATTATCTT	59.520	38.462	0.00	0.00	0.00	2.40
2448	2729	8.429641	AGTCTAAGAGGAACAGATGTTAAACAA	58.570	33.333	0.00	0.00	38.56	2.83
2540	2821	4.392138	GTCTGCAACAGTAAATGTCCTACC	59.608	45.833	0.00	0.00	43.00	3.18
2591	2872	1.371183	CCGTGCTGAACTCAAGGGA	59.629	57.895	0.00	0.00	30.91	4.20
2732	3019	1.228245	TGAGGAAGCTTGGTGTGGC	60.228	57.895	2.10	0.00	0.00	5.01
3023	3310	1.371558	GAACCCGACTGAAGCAGGT	59.628	57.895	0.00	0.00	35.51	4.00
3250	3540	6.211384	TGTCATACAATCTCTTTCTGGAGTCA	59.789	38.462	0.00	0.00	35.11	3.41
3253	3543	8.156820	TCATACAATCTCTTTCTGGAGTCAAAA	58.843	33.333	0.00	0.00	35.11	2.44
3355	3657	4.141251	AGGTGACTCTTTGTGGTACCAAAT	60.141	41.667	18.31	0.00	32.90	2.32
3374	3676	7.542025	ACCAAATTGAGCAAAGATGATCTAAC	58.458	34.615	0.00	0.00	42.48	2.34
3438	3740	5.859205	AGGAGAAAGCTTGTGTTGAAAAT	57.141	34.783	0.00	0.00	0.00	1.82
3662	3973	4.226427	TGATCCCTGATGAGTTGAAAGG	57.774	45.455	0.00	0.00	0.00	3.11
3733	4056	5.639082	CCAGAAAACCAATACCAAGAAATGC	59.361	40.000	0.00	0.00	0.00	3.56
3928	4259	6.825610	TGCACATGTGGACATATATGTTCTA	58.174	36.000	26.55	13.11	41.95	2.10
3988	4323	5.707764	TGCTACTTGTTATAAATGTGTGCCA	59.292	36.000	0.00	0.00	0.00	4.92
4016	4351	7.721286	AACTAAGACTGAGCATATGTAATGC	57.279	36.000	4.29	1.74	44.85	3.56
4057	4417	8.023128	CCCTGTAACTAAGATTGAACAAATGTG	58.977	37.037	0.00	0.00	0.00	3.21
4115	4521	1.356124	ACTGCCTGAGTGAATGACCT	58.644	50.000	0.00	0.00	31.75	3.85
4255	4664	1.950758	TTTTTAGTTCCCGCGGCAC	59.049	52.632	22.85	18.75	0.00	5.01
4271	4680	1.512230	CACACATGGCCAAATCCCG	59.488	57.895	10.96	0.00	0.00	5.14
4303	4712	3.846588	TCCCTCTAATCTATTCATGGCCC	59.153	47.826	0.00	0.00	0.00	5.80
4322	4733	1.382522	CAACCAATCAGATCCCCGTG	58.617	55.000	0.00	0.00	0.00	4.94
4361	4772	3.046390	GCGTCTCAAATCGATCGAGATT	58.954	45.455	23.84	17.21	42.13	2.40
4363	4774	3.423536	CGTCTCAAATCGATCGAGATTGG	59.576	47.826	30.31	24.00	40.39	3.16
4364	4775	4.611943	GTCTCAAATCGATCGAGATTGGA	58.388	43.478	30.31	25.16	40.39	3.53
4365	4776	5.226396	GTCTCAAATCGATCGAGATTGGAT	58.774	41.667	30.31	11.66	39.19	3.41
4366	4777	5.344665	GTCTCAAATCGATCGAGATTGGATC	59.655	44.000	30.31	21.30	39.19	3.36
4496	5073	4.069232	CGTGAGGAAGGCGCCTGA	62.069	66.667	33.60	9.13	38.73	3.86
4500	5077	3.077556	AGGAAGGCGCCTGATCGT	61.078	61.111	33.60	23.28	36.76	3.73
4533	5169	1.451927	CTGCATTGGGCCGAGCTTA	60.452	57.895	14.39	0.00	43.89	3.09
4557	5193	4.357947	GCGACCACCAGCTCGTCA	62.358	66.667	0.00	0.00	32.30	4.35
4613	5249	1.757306	CTCCAACTGCCACCTCACT	59.243	57.895	0.00	0.00	0.00	3.41
4622	5258	2.574018	CCACCTCACTGTCTCGCCA	61.574	63.158	0.00	0.00	0.00	5.69
4684	5320	1.453379	GAGATGGGGACGAGACGGA	60.453	63.158	0.00	0.00	0.00	4.69
4708	5345	3.718815	GGAGATGGTCCAACTTATCGTC	58.281	50.000	2.74	0.00	46.10	4.20
4711	5348	5.068723	GGAGATGGTCCAACTTATCGTCTTA	59.931	44.000	2.74	0.00	46.10	2.10
4717	5354	7.669427	TGGTCCAACTTATCGTCTTAACTTTA	58.331	34.615	0.00	0.00	0.00	1.85
4718	5355	8.316214	TGGTCCAACTTATCGTCTTAACTTTAT	58.684	33.333	0.00	0.00	0.00	1.40
4734	5375	6.746745	AACTTTATTTACCACATACCACGG	57.253	37.500	0.00	0.00	0.00	4.94
4761	5402	2.101582	GACGACTGGGCTGAATATGTCT	59.898	50.000	0.00	0.00	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
51	54	5.804639	ACCATGTAGCAAGAACAACAGATA	58.195	37.500	0.00	0.00	0.00	1.98
64	67	3.826524	TGGAAAGTTCAACCATGTAGCA	58.173	40.909	0.00	0.00	0.00	3.49
103	106	2.682856	ACGCCATACCTTTAACATGCAG	59.317	45.455	0.00	0.00	0.00	4.41
104	107	2.717390	ACGCCATACCTTTAACATGCA	58.283	42.857	0.00	0.00	0.00	3.96
113	116	0.252197	GGACCTCAACGCCATACCTT	59.748	55.000	0.00	0.00	0.00	3.50
227	230	3.881089	CCATTGCTAGCATGAGTTGATCA	59.119	43.478	20.13	0.00	43.70	2.92
323	329	3.616076	CGACATCCTCTATCCATTCAGCC	60.616	52.174	0.00	0.00	0.00	4.85
358	364	1.005450	GTATTGGTTCCCCCTCAGCAA	59.995	52.381	0.00	0.00	35.01	3.91
442	449	2.287970	GGACAACGTTTTCCCCACATTC	60.288	50.000	20.63	0.00	0.00	2.67
451	458	0.310854	CCTGCCTGGACAACGTTTTC	59.689	55.000	5.88	5.88	38.35	2.29
464	471	4.025858	ATGACACTGCGCCTGCCT	62.026	61.111	4.18	0.00	41.78	4.75
465	472	3.807538	CATGACACTGCGCCTGCC	61.808	66.667	4.18	0.00	41.78	4.85
577	584	2.505364	ATCTTCCTGTTGCTGGGGCC	62.505	60.000	0.00	0.00	37.74	5.80
595	602	2.235898	GCCTCCTCTTCACTGACTTGAT	59.764	50.000	0.00	0.00	0.00	2.57
631	647	7.166473	GCTTCCATTTTTGTAAGCGAATATCAG	59.834	37.037	0.00	0.00	35.47	2.90
645	661	2.995466	TCGAGCAGCTTCCATTTTTG	57.005	45.000	0.00	0.00	0.00	2.44
684	700	2.629137	TGCTGTCCACATTCATTGCTTT	59.371	40.909	0.00	0.00	0.00	3.51
703	719	6.019559	GGTGTTCTTGATTTCTTCAAACTTGC	60.020	38.462	0.00	0.00	43.64	4.01
791	807	1.568504	TAACGGATTCTGGCAGACCT	58.431	50.000	18.55	7.66	36.63	3.85
889	908	5.906772	TCCTTCCTTTCTAGGTCTTGTTT	57.093	39.130	0.00	0.00	42.60	2.83
943	1012	1.011968	GCCTCGTGCGTGATTGTGTA	61.012	55.000	0.00	0.00	0.00	2.90
1019	1256	2.789092	GCTTCATTGAGACGAATTGCCG	60.789	50.000	0.00	0.00	0.00	5.69
1176	1428	0.832135	TCTCCTGAAGGACCTTGCGT	60.832	55.000	12.68	0.00	39.78	5.24
1330	1591	4.876107	GGTTTCTTCAATTAGAGCATCGGA	59.124	41.667	0.00	0.00	42.67	4.55
1399	1660	6.764308	TTTGTCCATGATTCCTTTCATCTC	57.236	37.500	0.00	0.00	34.09	2.75
1404	1668	8.090214	TCTTCAATTTTGTCCATGATTCCTTTC	58.910	33.333	0.00	0.00	0.00	2.62
2124	2405	3.056250	CACCTATCACACAGCTCTTCACT	60.056	47.826	0.00	0.00	0.00	3.41
2415	2696	9.702253	ACATCTGTTCCTCTTAGACTAAGATAA	57.298	33.333	22.27	16.89	43.32	1.75
2421	2702	9.085645	TGTTTAACATCTGTTCCTCTTAGACTA	57.914	33.333	0.00	0.00	39.31	2.59
2448	2729	3.821033	GGTTGTTGATTTCACTAGGCAGT	59.179	43.478	0.00	0.00	34.42	4.40
2540	2821	0.239347	CAAACGCTTCAGCTTCAGGG	59.761	55.000	4.77	4.77	39.32	4.45
2574	2855	1.151668	CTTCCCTTGAGTTCAGCACG	58.848	55.000	0.00	0.00	0.00	5.34
2664	2951	4.853924	AACTTGATGATTTCGTGCCTTT	57.146	36.364	0.00	0.00	0.00	3.11
3023	3310	4.645535	CTTGTTGAGGACCTTCAGATCAA	58.354	43.478	0.00	0.00	0.00	2.57
3355	3657	7.692460	ACATTGTTAGATCATCTTTGCTCAA	57.308	32.000	0.00	0.00	0.00	3.02
3374	3676	7.592533	GCATATACTGTATCTTGGCAAACATTG	59.407	37.037	3.09	0.00	0.00	2.82
3438	3740	7.999679	ACTCATCTTTGTTGAACAAAATCTCA	58.000	30.769	22.08	6.70	46.15	3.27
3733	4056	4.963276	TGCCCATTTCTTCTATGTTTCG	57.037	40.909	0.00	0.00	0.00	3.46
3928	4259	5.701290	TCAGTCGATCGACATACACAGATAT	59.299	40.000	40.51	19.17	46.76	1.63
4057	4417	2.098934	TGAGCACAAACAACACACCATC	59.901	45.455	0.00	0.00	0.00	3.51
4115	4521	5.630121	AGTGGTTTAATTCTCACACCATGA	58.370	37.500	0.00	0.00	39.69	3.07
4208	4616	3.388024	AGCGCAGAATAGATTACAGGGAA	59.612	43.478	11.47	0.00	0.00	3.97
4209	4617	2.965831	AGCGCAGAATAGATTACAGGGA	59.034	45.455	11.47	0.00	0.00	4.20
4241	4650	2.949909	ATGTGTGCCGCGGGAACTA	61.950	57.895	29.38	13.98	31.04	2.24
4255	4664	0.964860	TGTCGGGATTTGGCCATGTG	60.965	55.000	6.09	0.00	0.00	3.21
4271	4680	7.993183	TGAATAGATTAGAGGGAATTTGGTGTC	59.007	37.037	0.00	0.00	0.00	3.67
4303	4712	1.382522	CACGGGGATCTGATTGGTTG	58.617	55.000	0.00	0.00	0.00	3.77
4363	4774	0.394352	GTGGGTGTGGGATGTGGATC	60.394	60.000	0.00	0.00	0.00	3.36
4364	4775	1.139498	TGTGGGTGTGGGATGTGGAT	61.139	55.000	0.00	0.00	0.00	3.41
4365	4776	1.772156	TGTGGGTGTGGGATGTGGA	60.772	57.895	0.00	0.00	0.00	4.02
4366	4777	1.603455	GTGTGGGTGTGGGATGTGG	60.603	63.158	0.00	0.00	0.00	4.17
4462	5039	0.336737	ACGGACCTCATCCTTCCTCT	59.663	55.000	0.00	0.00	46.69	3.69
4472	5049	2.283529	GCCTTCCTCACGGACCTCA	61.284	63.158	0.00	0.00	39.60	3.86
4481	5058	2.903357	GATCAGGCGCCTTCCTCA	59.097	61.111	30.60	8.89	33.25	3.86
4482	5059	2.279784	CGATCAGGCGCCTTCCTC	60.280	66.667	30.60	21.67	33.25	3.71
4496	5073	2.081425	GAGGAGAGCCATCGCACGAT	62.081	60.000	0.00	0.00	37.52	3.73
4500	5077	3.086391	GCAGAGGAGAGCCATCGCA	62.086	63.158	0.00	0.00	37.52	5.10
4503	5139	1.595466	CAATGCAGAGGAGAGCCATC	58.405	55.000	0.00	0.00	36.29	3.51
4599	5235	0.394565	GAGACAGTGAGGTGGCAGTT	59.605	55.000	0.00	0.00	0.00	3.16
4622	5258	3.910490	GCGCTCGAGCCCATCTCT	61.910	66.667	30.66	0.00	39.70	3.10
4684	5320	1.568504	TAAGTTGGACCATCTCCGCT	58.431	50.000	5.52	0.00	43.03	5.52
4688	5324	4.657436	AGACGATAAGTTGGACCATCTC	57.343	45.455	5.52	0.00	0.00	2.75
4689	5325	6.154706	AGTTAAGACGATAAGTTGGACCATCT	59.845	38.462	0.00	0.00	0.00	2.90
4708	5345	8.392612	CCGTGGTATGTGGTAAATAAAGTTAAG	58.607	37.037	0.00	0.00	0.00	1.85
4711	5348	5.648960	CCCGTGGTATGTGGTAAATAAAGTT	59.351	40.000	0.00	0.00	0.00	2.66
4717	5354	1.409101	GCCCCGTGGTATGTGGTAAAT	60.409	52.381	0.00	0.00	0.00	1.40
4718	5355	0.035247	GCCCCGTGGTATGTGGTAAA	60.035	55.000	0.00	0.00	0.00	2.01
4725	5362	2.189521	GTCAGGCCCCGTGGTATG	59.810	66.667	0.00	0.00	0.00	2.39

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.