Multiple sequence alignment - TraesCS1B01G339100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G339100 chr1B 100.000 5843 0 0 1 5843 566837047 566831205 0.000000e+00 10791.0
1 TraesCS1B01G339100 chr1D 90.879 2094 111 42 1314 3360 419728165 419726105 0.000000e+00 2736.0
2 TraesCS1B01G339100 chr1D 89.212 1928 92 46 3360 5194 419726069 419724165 0.000000e+00 2302.0
3 TraesCS1B01G339100 chr1D 86.530 683 24 15 5185 5838 419723658 419723015 0.000000e+00 689.0
4 TraesCS1B01G339100 chr1D 83.223 757 46 34 404 1132 419729059 419728356 2.310000e-173 619.0
5 TraesCS1B01G339100 chr1D 84.940 166 14 7 175 336 419733680 419733522 2.180000e-34 158.0
6 TraesCS1B01G339100 chr1D 94.595 37 2 0 4 40 419733862 419733826 2.270000e-04 58.4
7 TraesCS1B01G339100 chr1A 90.632 1804 121 27 1596 3360 516562119 516560325 0.000000e+00 2351.0
8 TraesCS1B01G339100 chr1A 90.672 804 33 21 4181 4957 516559407 516558619 0.000000e+00 1031.0
9 TraesCS1B01G339100 chr1A 87.831 830 63 8 3360 4162 516560289 516559471 0.000000e+00 939.0
10 TraesCS1B01G339100 chr1A 77.667 1003 103 63 175 1132 516563392 516562466 3.140000e-137 499.0
11 TraesCS1B01G339100 chr1A 92.308 65 5 0 4964 5028 516558111 516558047 6.230000e-15 93.5
12 TraesCS1B01G339100 chr3A 79.042 334 58 9 3791 4121 565377757 565378081 9.860000e-53 219.0
13 TraesCS1B01G339100 chr3A 78.390 236 50 1 1756 1991 565376694 565376928 1.010000e-32 152.0
14 TraesCS1B01G339100 chr3D 78.614 332 63 6 3791 4121 423845961 423845637 4.590000e-51 213.0
15 TraesCS1B01G339100 chr3D 78.279 244 51 2 1749 1991 423847040 423846798 7.840000e-34 156.0
16 TraesCS1B01G339100 chr3D 100.000 33 0 0 4130 4162 603169572 603169540 1.760000e-05 62.1
17 TraesCS1B01G339100 chr3B 78.679 333 61 8 3791 4121 553062021 553062345 4.590000e-51 213.0
18 TraesCS1B01G339100 chr3B 78.829 222 47 0 1770 1991 553060969 553061190 3.650000e-32 150.0
19 TraesCS1B01G339100 chr4A 89.286 112 12 0 5695 5806 744022441 744022330 2.200000e-29 141.0
20 TraesCS1B01G339100 chr4A 83.465 127 21 0 5677 5803 741137589 741137715 1.030000e-22 119.0
21 TraesCS1B01G339100 chr4A 100.000 33 0 0 4130 4162 16478137 16478169 1.760000e-05 62.1
22 TraesCS1B01G339100 chr4A 100.000 28 0 0 4129 4156 565436121 565436148 1.100000e-02 52.8
23 TraesCS1B01G339100 chr7D 93.750 80 1 1 1345 1424 635633464 635633539 3.700000e-22 117.0
24 TraesCS1B01G339100 chr7D 92.500 80 2 1 1345 1424 635624443 635624518 1.720000e-20 111.0
25 TraesCS1B01G339100 chr7D 92.500 80 2 1 1345 1424 635625142 635625217 1.720000e-20 111.0
26 TraesCS1B01G339100 chr7D 91.250 80 3 1 1345 1424 635623744 635623819 8.010000e-19 106.0
27 TraesCS1B01G339100 chr4D 89.362 47 4 1 4116 4162 481381091 481381046 2.270000e-04 58.4
28 TraesCS1B01G339100 chr4D 96.970 33 1 0 4130 4162 502400108 502400140 8.180000e-04 56.5
29 TraesCS1B01G339100 chr6B 100.000 29 0 0 4129 4157 289179239 289179267 3.000000e-03 54.7
30 TraesCS1B01G339100 chr2D 100.000 29 0 0 4129 4157 51940854 51940826 3.000000e-03 54.7
31 TraesCS1B01G339100 chr2A 100.000 29 0 0 4129 4157 53078514 53078486 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G339100 chr1B 566831205 566837047 5842 True 10791.0 10791 100.000 1 5843 1 chr1B.!!$R1 5842
1 TraesCS1B01G339100 chr1D 419723015 419729059 6044 True 1586.5 2736 87.461 404 5838 4 chr1D.!!$R1 5434
2 TraesCS1B01G339100 chr1A 516558047 516563392 5345 True 982.7 2351 87.822 175 5028 5 chr1A.!!$R1 4853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.030908 CGCTGCCTAGTGCCTACTAC 59.969 60.0 0.00 0.00 40.16 2.73 F
915 977 0.033011 TCCTTCCTCTTCCTCCCTCG 60.033 60.0 0.00 0.00 0.00 4.63 F
1202 1304 0.034896 TCGCCCAGTTTCAGTTCCTC 59.965 55.0 0.00 0.00 0.00 3.71 F
1558 1712 0.247460 TTCTGTGACTCTGCCGGATG 59.753 55.0 5.05 0.00 0.00 3.51 F
2154 2354 0.258774 ACATGGTATTGGAGGCCACC 59.741 55.0 13.09 13.09 34.84 4.61 F
3870 4165 0.105039 GGAGGGACGTGATCATGGAC 59.895 60.0 18.97 11.84 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1174 1276 0.036875 AAACTGGGCGAGGAAGAAGG 59.963 55.0 0.51 0.0 0.00 3.46 R
2295 2504 0.029300 CAAACCACACACAAGAGCGG 59.971 55.0 0.00 0.0 0.00 5.52 R
2402 2611 0.773644 ATCCAGTGCCAGGTTGACTT 59.226 50.0 0.00 0.0 0.00 3.01 R
3329 3551 0.531532 AGCTCGGCATTTCTCATCCG 60.532 55.0 0.00 0.0 42.96 4.18 R
3876 4171 1.244019 AAAATGGCTCCCACGACAGC 61.244 55.0 0.00 0.0 35.80 4.40 R
5733 7183 0.370273 CTATGCCGACGTTTGTGCTC 59.630 55.0 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.214387 AAAAGCTTGCAGTTGAGTGC 57.786 45.000 0.00 3.88 44.27 4.40
21 22 0.386838 AAAGCTTGCAGTTGAGTGCC 59.613 50.000 0.00 0.00 43.28 5.01
22 23 0.466922 AAGCTTGCAGTTGAGTGCCT 60.467 50.000 0.00 0.00 43.28 4.75
23 24 1.170919 AGCTTGCAGTTGAGTGCCTG 61.171 55.000 8.24 2.81 43.28 4.85
24 25 1.168407 GCTTGCAGTTGAGTGCCTGA 61.168 55.000 8.24 0.00 43.28 3.86
25 26 0.590195 CTTGCAGTTGAGTGCCTGAC 59.410 55.000 8.24 0.00 43.28 3.51
26 27 0.181114 TTGCAGTTGAGTGCCTGACT 59.819 50.000 8.24 0.00 43.28 3.41
27 28 0.533531 TGCAGTTGAGTGCCTGACTG 60.534 55.000 8.24 0.00 43.28 3.51
28 29 0.250038 GCAGTTGAGTGCCTGACTGA 60.250 55.000 6.54 0.00 41.46 3.41
29 30 1.506493 CAGTTGAGTGCCTGACTGAC 58.494 55.000 0.00 0.00 41.46 3.51
30 31 1.069823 CAGTTGAGTGCCTGACTGACT 59.930 52.381 0.00 0.00 41.46 3.41
31 32 1.069823 AGTTGAGTGCCTGACTGACTG 59.930 52.381 0.00 0.00 33.83 3.51
32 33 1.069204 GTTGAGTGCCTGACTGACTGA 59.931 52.381 0.00 0.00 33.83 3.41
33 34 0.676184 TGAGTGCCTGACTGACTGAC 59.324 55.000 0.00 0.00 33.83 3.51
34 35 0.965439 GAGTGCCTGACTGACTGACT 59.035 55.000 0.00 0.00 33.83 3.41
35 36 0.678395 AGTGCCTGACTGACTGACTG 59.322 55.000 0.00 0.00 31.75 3.51
36 37 0.676184 GTGCCTGACTGACTGACTGA 59.324 55.000 0.00 0.00 0.00 3.41
37 38 0.676184 TGCCTGACTGACTGACTGAC 59.324 55.000 0.00 0.00 0.00 3.51
38 39 0.965439 GCCTGACTGACTGACTGACT 59.035 55.000 0.00 0.00 0.00 3.41
39 40 1.336702 GCCTGACTGACTGACTGACTG 60.337 57.143 0.00 0.00 0.00 3.51
40 41 1.271934 CCTGACTGACTGACTGACTGG 59.728 57.143 0.00 0.00 0.00 4.00
41 42 2.234143 CTGACTGACTGACTGACTGGA 58.766 52.381 0.00 0.00 0.00 3.86
42 43 2.228582 CTGACTGACTGACTGACTGGAG 59.771 54.545 0.00 0.00 0.00 3.86
43 44 2.235016 GACTGACTGACTGACTGGAGT 58.765 52.381 0.00 0.00 0.00 3.85
44 45 1.959985 ACTGACTGACTGACTGGAGTG 59.040 52.381 0.00 0.00 0.00 3.51
45 46 2.234143 CTGACTGACTGACTGGAGTGA 58.766 52.381 0.00 0.00 0.00 3.41
46 47 2.625314 CTGACTGACTGACTGGAGTGAA 59.375 50.000 0.00 0.00 0.00 3.18
47 48 2.362397 TGACTGACTGACTGGAGTGAAC 59.638 50.000 0.00 0.00 0.00 3.18
48 49 1.338337 ACTGACTGACTGGAGTGAACG 59.662 52.381 0.00 0.00 0.00 3.95
49 50 0.032130 TGACTGACTGGAGTGAACGC 59.968 55.000 0.00 0.00 0.00 4.84
50 51 1.004277 GACTGACTGGAGTGAACGCG 61.004 60.000 3.53 3.53 0.00 6.01
51 52 1.007271 CTGACTGGAGTGAACGCGT 60.007 57.895 5.58 5.58 0.00 6.01
52 53 1.004277 CTGACTGGAGTGAACGCGTC 61.004 60.000 14.44 7.01 0.00 5.19
53 54 1.007734 GACTGGAGTGAACGCGTCA 60.008 57.895 14.44 9.96 0.00 4.35
54 55 0.388649 GACTGGAGTGAACGCGTCAT 60.389 55.000 14.44 0.00 38.90 3.06
55 56 0.388649 ACTGGAGTGAACGCGTCATC 60.389 55.000 14.44 8.36 38.90 2.92
56 57 0.388520 CTGGAGTGAACGCGTCATCA 60.389 55.000 14.44 11.53 38.90 3.07
57 58 0.388520 TGGAGTGAACGCGTCATCAG 60.389 55.000 14.44 0.00 38.90 2.90
58 59 1.078759 GGAGTGAACGCGTCATCAGG 61.079 60.000 14.44 0.00 38.90 3.86
59 60 1.687494 GAGTGAACGCGTCATCAGGC 61.687 60.000 14.44 4.72 38.90 4.85
66 67 3.554692 CGTCATCAGGCGCCGTTC 61.555 66.667 23.20 8.79 0.00 3.95
67 68 2.125512 GTCATCAGGCGCCGTTCT 60.126 61.111 23.20 0.00 0.00 3.01
68 69 1.141019 GTCATCAGGCGCCGTTCTA 59.859 57.895 23.20 5.12 0.00 2.10
69 70 0.459585 GTCATCAGGCGCCGTTCTAA 60.460 55.000 23.20 3.28 0.00 2.10
70 71 0.459585 TCATCAGGCGCCGTTCTAAC 60.460 55.000 23.20 0.00 0.00 2.34
71 72 1.153429 ATCAGGCGCCGTTCTAACC 60.153 57.895 23.20 0.00 0.00 2.85
72 73 1.614241 ATCAGGCGCCGTTCTAACCT 61.614 55.000 23.20 0.00 0.00 3.50
73 74 1.375523 CAGGCGCCGTTCTAACCTT 60.376 57.895 23.20 0.00 0.00 3.50
74 75 0.953960 CAGGCGCCGTTCTAACCTTT 60.954 55.000 23.20 0.00 0.00 3.11
75 76 0.672711 AGGCGCCGTTCTAACCTTTC 60.673 55.000 23.20 0.00 0.00 2.62
76 77 1.642037 GGCGCCGTTCTAACCTTTCC 61.642 60.000 12.58 0.00 0.00 3.13
77 78 0.672711 GCGCCGTTCTAACCTTTCCT 60.673 55.000 0.00 0.00 0.00 3.36
78 79 1.356938 CGCCGTTCTAACCTTTCCTC 58.643 55.000 0.00 0.00 0.00 3.71
79 80 1.356938 GCCGTTCTAACCTTTCCTCG 58.643 55.000 0.00 0.00 0.00 4.63
80 81 2.005560 GCCGTTCTAACCTTTCCTCGG 61.006 57.143 0.00 0.00 39.71 4.63
81 82 1.274447 CCGTTCTAACCTTTCCTCGGT 59.726 52.381 0.00 0.00 35.97 4.69
82 83 2.603953 CGTTCTAACCTTTCCTCGGTC 58.396 52.381 0.00 0.00 32.46 4.79
83 84 2.673326 CGTTCTAACCTTTCCTCGGTCC 60.673 54.545 0.00 0.00 32.46 4.46
84 85 1.565067 TCTAACCTTTCCTCGGTCCC 58.435 55.000 0.00 0.00 32.46 4.46
85 86 1.078324 TCTAACCTTTCCTCGGTCCCT 59.922 52.381 0.00 0.00 32.46 4.20
86 87 1.907255 CTAACCTTTCCTCGGTCCCTT 59.093 52.381 0.00 0.00 32.46 3.95
87 88 0.691332 AACCTTTCCTCGGTCCCTTC 59.309 55.000 0.00 0.00 32.46 3.46
88 89 0.473117 ACCTTTCCTCGGTCCCTTCA 60.473 55.000 0.00 0.00 0.00 3.02
89 90 0.690762 CCTTTCCTCGGTCCCTTCAA 59.309 55.000 0.00 0.00 0.00 2.69
90 91 1.282157 CCTTTCCTCGGTCCCTTCAAT 59.718 52.381 0.00 0.00 0.00 2.57
91 92 2.633488 CTTTCCTCGGTCCCTTCAATC 58.367 52.381 0.00 0.00 0.00 2.67
92 93 0.535335 TTCCTCGGTCCCTTCAATCG 59.465 55.000 0.00 0.00 0.00 3.34
93 94 0.613853 TCCTCGGTCCCTTCAATCGT 60.614 55.000 0.00 0.00 0.00 3.73
94 95 0.179108 CCTCGGTCCCTTCAATCGTC 60.179 60.000 0.00 0.00 0.00 4.20
95 96 0.525668 CTCGGTCCCTTCAATCGTCG 60.526 60.000 0.00 0.00 0.00 5.12
96 97 0.961857 TCGGTCCCTTCAATCGTCGA 60.962 55.000 0.00 0.00 0.00 4.20
97 98 0.108992 CGGTCCCTTCAATCGTCGAA 60.109 55.000 0.00 0.00 0.00 3.71
98 99 1.670674 CGGTCCCTTCAATCGTCGAAA 60.671 52.381 0.00 0.00 0.00 3.46
99 100 2.419667 GGTCCCTTCAATCGTCGAAAA 58.580 47.619 0.00 0.00 0.00 2.29
100 101 3.007635 GGTCCCTTCAATCGTCGAAAAT 58.992 45.455 0.00 0.00 0.00 1.82
101 102 3.181510 GGTCCCTTCAATCGTCGAAAATG 60.182 47.826 0.00 0.00 0.00 2.32
102 103 3.435671 GTCCCTTCAATCGTCGAAAATGT 59.564 43.478 0.00 0.00 0.00 2.71
103 104 4.069304 TCCCTTCAATCGTCGAAAATGTT 58.931 39.130 0.00 0.00 0.00 2.71
104 105 4.083537 TCCCTTCAATCGTCGAAAATGTTG 60.084 41.667 0.00 0.00 0.00 3.33
105 106 4.158384 CCTTCAATCGTCGAAAATGTTGG 58.842 43.478 0.00 3.11 0.00 3.77
106 107 3.822594 TCAATCGTCGAAAATGTTGGG 57.177 42.857 0.00 0.00 0.00 4.12
107 108 3.403968 TCAATCGTCGAAAATGTTGGGA 58.596 40.909 0.00 0.00 0.00 4.37
108 109 4.006989 TCAATCGTCGAAAATGTTGGGAT 58.993 39.130 0.00 0.00 0.00 3.85
109 110 4.457603 TCAATCGTCGAAAATGTTGGGATT 59.542 37.500 0.00 0.00 0.00 3.01
110 111 5.048364 TCAATCGTCGAAAATGTTGGGATTT 60.048 36.000 0.00 0.00 0.00 2.17
111 112 4.153958 TCGTCGAAAATGTTGGGATTTG 57.846 40.909 0.00 0.00 0.00 2.32
112 113 3.566322 TCGTCGAAAATGTTGGGATTTGT 59.434 39.130 0.00 0.00 0.00 2.83
113 114 3.668191 CGTCGAAAATGTTGGGATTTGTG 59.332 43.478 0.00 0.00 0.00 3.33
114 115 3.428534 GTCGAAAATGTTGGGATTTGTGC 59.571 43.478 0.00 0.00 0.00 4.57
115 116 2.408032 CGAAAATGTTGGGATTTGTGCG 59.592 45.455 0.00 0.00 0.00 5.34
116 117 3.389221 GAAAATGTTGGGATTTGTGCGT 58.611 40.909 0.00 0.00 0.00 5.24
117 118 2.723124 AATGTTGGGATTTGTGCGTC 57.277 45.000 0.00 0.00 0.00 5.19
118 119 0.521291 ATGTTGGGATTTGTGCGTCG 59.479 50.000 0.00 0.00 0.00 5.12
119 120 1.209127 GTTGGGATTTGTGCGTCGG 59.791 57.895 0.00 0.00 0.00 4.79
120 121 1.228003 TTGGGATTTGTGCGTCGGT 60.228 52.632 0.00 0.00 0.00 4.69
121 122 1.231958 TTGGGATTTGTGCGTCGGTC 61.232 55.000 0.00 0.00 0.00 4.79
122 123 2.736682 GGGATTTGTGCGTCGGTCG 61.737 63.158 0.00 0.00 43.12 4.79
123 124 1.735198 GGATTTGTGCGTCGGTCGA 60.735 57.895 0.00 0.00 42.86 4.20
124 125 1.414897 GATTTGTGCGTCGGTCGAC 59.585 57.895 7.13 7.13 42.86 4.20
136 137 3.807538 GTCGACGGTCGCTGCCTA 61.808 66.667 24.76 4.43 40.21 3.93
137 138 3.506096 TCGACGGTCGCTGCCTAG 61.506 66.667 24.76 0.00 40.21 3.02
138 139 3.812019 CGACGGTCGCTGCCTAGT 61.812 66.667 18.36 0.00 31.14 2.57
139 140 2.202623 GACGGTCGCTGCCTAGTG 60.203 66.667 0.00 0.00 35.74 2.74
140 141 4.436998 ACGGTCGCTGCCTAGTGC 62.437 66.667 0.00 0.00 41.77 4.40
142 143 3.775654 GGTCGCTGCCTAGTGCCT 61.776 66.667 0.00 0.00 40.16 4.75
143 144 2.423898 GGTCGCTGCCTAGTGCCTA 61.424 63.158 0.00 0.00 40.16 3.93
144 145 1.227002 GTCGCTGCCTAGTGCCTAC 60.227 63.158 0.00 0.00 40.16 3.18
145 146 1.379977 TCGCTGCCTAGTGCCTACT 60.380 57.895 0.00 0.00 40.16 2.57
146 147 0.106868 TCGCTGCCTAGTGCCTACTA 60.107 55.000 0.00 0.00 40.16 1.82
147 148 0.030908 CGCTGCCTAGTGCCTACTAC 59.969 60.000 0.00 0.00 40.16 2.73
148 149 1.112113 GCTGCCTAGTGCCTACTACA 58.888 55.000 0.00 0.00 40.16 2.74
149 150 1.067821 GCTGCCTAGTGCCTACTACAG 59.932 57.143 0.00 0.00 40.16 2.74
150 151 2.379972 CTGCCTAGTGCCTACTACAGT 58.620 52.381 1.42 0.00 40.16 3.55
151 152 3.552875 CTGCCTAGTGCCTACTACAGTA 58.447 50.000 1.42 0.00 40.16 2.74
152 153 3.285484 TGCCTAGTGCCTACTACAGTAC 58.715 50.000 1.42 0.00 40.16 2.73
153 154 2.290093 GCCTAGTGCCTACTACAGTACG 59.710 54.545 0.00 0.00 38.36 3.67
154 155 3.539604 CCTAGTGCCTACTACAGTACGT 58.460 50.000 0.00 0.00 38.36 3.57
155 156 4.697514 CCTAGTGCCTACTACAGTACGTA 58.302 47.826 0.00 0.00 38.36 3.57
163 164 0.384669 CTACAGTACGTAGCAGGGGC 59.615 60.000 0.00 0.00 41.24 5.80
164 165 1.039233 TACAGTACGTAGCAGGGGCC 61.039 60.000 0.00 0.00 42.56 5.80
165 166 2.038329 AGTACGTAGCAGGGGCCA 59.962 61.111 4.39 0.00 42.56 5.36
166 167 1.611261 AGTACGTAGCAGGGGCCAA 60.611 57.895 4.39 0.00 42.56 4.52
167 168 1.449070 GTACGTAGCAGGGGCCAAC 60.449 63.158 4.39 0.00 42.56 3.77
168 169 1.914263 TACGTAGCAGGGGCCAACA 60.914 57.895 4.39 0.00 42.56 3.33
169 170 1.481901 TACGTAGCAGGGGCCAACAA 61.482 55.000 4.39 0.00 42.56 2.83
170 171 1.602323 CGTAGCAGGGGCCAACAAA 60.602 57.895 4.39 0.00 42.56 2.83
171 172 1.175983 CGTAGCAGGGGCCAACAAAA 61.176 55.000 4.39 0.00 42.56 2.44
172 173 0.603065 GTAGCAGGGGCCAACAAAAG 59.397 55.000 4.39 0.00 42.56 2.27
173 174 0.480690 TAGCAGGGGCCAACAAAAGA 59.519 50.000 4.39 0.00 42.56 2.52
177 178 1.121407 AGGGGCCAACAAAAGAAGCC 61.121 55.000 4.39 0.00 43.09 4.35
180 181 1.664649 GCCAACAAAAGAAGCCGGC 60.665 57.895 21.89 21.89 0.00 6.13
183 184 0.318955 CAACAAAAGAAGCCGGCCAG 60.319 55.000 26.15 7.81 0.00 4.85
187 188 0.967380 AAAAGAAGCCGGCCAGGATG 60.967 55.000 26.15 0.00 45.00 3.51
201 202 1.613437 CAGGATGGAACGCTTTTGGTT 59.387 47.619 0.00 0.00 0.00 3.67
212 213 1.616159 CTTTTGGTTGGTCGGGTCAT 58.384 50.000 0.00 0.00 0.00 3.06
213 214 1.960689 CTTTTGGTTGGTCGGGTCATT 59.039 47.619 0.00 0.00 0.00 2.57
244 245 4.889807 CCACCAGGTTCGTTTCCA 57.110 55.556 0.00 0.00 0.00 3.53
245 246 3.339547 CCACCAGGTTCGTTTCCAT 57.660 52.632 0.00 0.00 0.00 3.41
246 247 0.881118 CCACCAGGTTCGTTTCCATG 59.119 55.000 0.00 0.00 0.00 3.66
247 248 0.881118 CACCAGGTTCGTTTCCATGG 59.119 55.000 4.97 4.97 33.05 3.66
248 249 0.893727 ACCAGGTTCGTTTCCATGGC 60.894 55.000 6.96 0.00 31.34 4.40
249 250 1.501741 CAGGTTCGTTTCCATGGCG 59.498 57.895 6.96 5.26 0.00 5.69
250 251 2.178273 GGTTCGTTTCCATGGCGC 59.822 61.111 6.96 0.00 0.00 6.53
251 252 2.202298 GTTCGTTTCCATGGCGCG 60.202 61.111 6.96 11.26 0.00 6.86
252 253 2.357638 TTCGTTTCCATGGCGCGA 60.358 55.556 12.10 17.03 0.00 5.87
253 254 2.387445 TTCGTTTCCATGGCGCGAG 61.387 57.895 12.10 0.00 33.09 5.03
254 255 2.773397 TTCGTTTCCATGGCGCGAGA 62.773 55.000 12.10 8.36 33.09 4.04
255 256 2.785258 GTTTCCATGGCGCGAGAC 59.215 61.111 12.10 0.00 42.12 3.36
329 337 2.093972 GAGAAGATCGGAAGACGTCG 57.906 55.000 10.46 0.00 46.97 5.12
331 339 0.866483 GAAGATCGGAAGACGTCGCC 60.866 60.000 17.36 17.36 46.97 5.54
332 340 2.594119 AAGATCGGAAGACGTCGCCG 62.594 60.000 33.00 33.00 46.97 6.46
336 344 4.060038 GGAAGACGTCGCCGGGAA 62.060 66.667 10.46 0.00 38.78 3.97
337 345 2.808321 GAAGACGTCGCCGGGAAC 60.808 66.667 10.46 0.00 38.78 3.62
352 360 4.666253 AACCCGCACATGGCTGCT 62.666 61.111 6.72 0.00 41.67 4.24
366 374 2.913578 TGCTGGCCCTTGCAGTTG 60.914 61.111 10.53 0.00 40.13 3.16
368 376 2.115910 CTGGCCCTTGCAGTTGGA 59.884 61.111 0.00 0.00 40.13 3.53
369 377 1.304713 CTGGCCCTTGCAGTTGGAT 60.305 57.895 0.00 0.00 40.13 3.41
370 378 0.901580 CTGGCCCTTGCAGTTGGATT 60.902 55.000 0.00 0.00 40.13 3.01
371 379 0.899717 TGGCCCTTGCAGTTGGATTC 60.900 55.000 0.00 0.00 40.13 2.52
373 381 0.960364 GCCCTTGCAGTTGGATTCGA 60.960 55.000 2.70 0.00 37.47 3.71
374 382 1.089920 CCCTTGCAGTTGGATTCGAG 58.910 55.000 4.35 0.00 0.00 4.04
375 383 1.089920 CCTTGCAGTTGGATTCGAGG 58.910 55.000 0.00 0.00 0.00 4.63
376 384 1.611673 CCTTGCAGTTGGATTCGAGGT 60.612 52.381 0.00 0.00 0.00 3.85
377 385 1.466167 CTTGCAGTTGGATTCGAGGTG 59.534 52.381 0.00 0.00 0.00 4.00
378 386 0.396435 TGCAGTTGGATTCGAGGTGT 59.604 50.000 0.00 0.00 0.00 4.16
381 389 2.094182 GCAGTTGGATTCGAGGTGTAGA 60.094 50.000 0.00 0.00 0.00 2.59
382 390 3.616560 GCAGTTGGATTCGAGGTGTAGAA 60.617 47.826 0.00 0.00 0.00 2.10
383 391 4.566004 CAGTTGGATTCGAGGTGTAGAAA 58.434 43.478 0.00 0.00 0.00 2.52
384 392 4.627467 CAGTTGGATTCGAGGTGTAGAAAG 59.373 45.833 0.00 0.00 0.00 2.62
385 393 4.527038 AGTTGGATTCGAGGTGTAGAAAGA 59.473 41.667 0.00 0.00 0.00 2.52
386 394 5.011738 AGTTGGATTCGAGGTGTAGAAAGAA 59.988 40.000 0.00 0.00 0.00 2.52
387 395 5.477607 TGGATTCGAGGTGTAGAAAGAAA 57.522 39.130 0.00 0.00 0.00 2.52
389 397 5.874810 TGGATTCGAGGTGTAGAAAGAAATG 59.125 40.000 0.00 0.00 0.00 2.32
390 398 5.220681 GGATTCGAGGTGTAGAAAGAAATGC 60.221 44.000 0.00 0.00 0.00 3.56
391 399 4.265904 TCGAGGTGTAGAAAGAAATGCA 57.734 40.909 0.00 0.00 0.00 3.96
392 400 3.994392 TCGAGGTGTAGAAAGAAATGCAC 59.006 43.478 0.00 0.00 0.00 4.57
393 401 3.997021 CGAGGTGTAGAAAGAAATGCACT 59.003 43.478 0.00 0.00 33.21 4.40
406 430 6.259550 AGAAATGCACTAACAAATCTGGTC 57.740 37.500 0.00 0.00 0.00 4.02
442 466 4.700365 GTCAAAACTGCCCGCGCC 62.700 66.667 0.00 0.00 0.00 6.53
476 503 3.497262 CCCGTACGCTTTCTTTCTTTCTT 59.503 43.478 10.49 0.00 0.00 2.52
481 515 6.074249 CGTACGCTTTCTTTCTTTCTTTCTCT 60.074 38.462 0.52 0.00 0.00 3.10
482 516 6.293713 ACGCTTTCTTTCTTTCTTTCTCTC 57.706 37.500 0.00 0.00 0.00 3.20
487 521 4.310769 TCTTTCTTTCTTTCTCTCGCCAG 58.689 43.478 0.00 0.00 0.00 4.85
489 523 1.082690 CTTTCTTTCTCTCGCCAGCC 58.917 55.000 0.00 0.00 0.00 4.85
490 524 0.396435 TTTCTTTCTCTCGCCAGCCA 59.604 50.000 0.00 0.00 0.00 4.75
493 527 2.454832 CTTTCTCTCGCCAGCCACCA 62.455 60.000 0.00 0.00 0.00 4.17
494 528 2.050836 TTTCTCTCGCCAGCCACCAA 62.051 55.000 0.00 0.00 0.00 3.67
495 529 2.731691 TTCTCTCGCCAGCCACCAAC 62.732 60.000 0.00 0.00 0.00 3.77
608 660 4.216257 ACCGTACCGTCCATACATATACAC 59.784 45.833 0.00 0.00 0.00 2.90
635 689 2.264120 GAGCCAGGCCTTCCTTCCTC 62.264 65.000 8.22 0.00 41.93 3.71
640 694 1.210885 AGGCCTTCCTTCCTCCCTTG 61.211 60.000 0.00 0.00 40.66 3.61
670 724 3.418068 GCCGAGTGCAGTGCAGAC 61.418 66.667 20.42 14.30 40.08 3.51
683 737 2.046892 CAGACTGCTTCCCACCCG 60.047 66.667 0.00 0.00 0.00 5.28
781 843 4.373116 CGCCACTGTACCGCCTGT 62.373 66.667 0.00 0.00 0.00 4.00
786 848 4.143333 CTGTACCGCCTGTCCCCG 62.143 72.222 0.00 0.00 0.00 5.73
847 909 0.036388 GGGTTGTCCAGAAGCATCGA 60.036 55.000 0.00 0.00 35.00 3.59
913 975 0.341609 CCTCCTTCCTCTTCCTCCCT 59.658 60.000 0.00 0.00 0.00 4.20
915 977 0.033011 TCCTTCCTCTTCCTCCCTCG 60.033 60.000 0.00 0.00 0.00 4.63
917 979 1.107945 CTTCCTCTTCCTCCCTCGTC 58.892 60.000 0.00 0.00 0.00 4.20
934 996 1.760875 TCGCCTGATCCCACTACCC 60.761 63.158 0.00 0.00 0.00 3.69
935 997 2.808206 CGCCTGATCCCACTACCCC 61.808 68.421 0.00 0.00 0.00 4.95
936 998 1.692749 GCCTGATCCCACTACCCCA 60.693 63.158 0.00 0.00 0.00 4.96
954 1039 0.389817 CACCGCATTTCTCGTCTCCA 60.390 55.000 0.00 0.00 0.00 3.86
967 1052 0.318762 GTCTCCACTCGCCTTCAACT 59.681 55.000 0.00 0.00 0.00 3.16
976 1066 1.600916 GCCTTCAACTGCCGGAAGT 60.601 57.895 10.19 10.19 39.04 3.01
977 1067 0.321298 GCCTTCAACTGCCGGAAGTA 60.321 55.000 17.81 0.00 39.04 2.24
978 1068 1.726853 CCTTCAACTGCCGGAAGTAG 58.273 55.000 17.81 9.93 39.04 2.57
979 1069 1.676014 CCTTCAACTGCCGGAAGTAGG 60.676 57.143 17.81 15.84 39.04 3.18
980 1070 0.323629 TTCAACTGCCGGAAGTAGGG 59.676 55.000 17.81 9.07 0.00 3.53
981 1071 1.078426 CAACTGCCGGAAGTAGGGG 60.078 63.158 17.81 2.00 0.00 4.79
982 1072 2.298661 AACTGCCGGAAGTAGGGGG 61.299 63.158 17.81 0.00 0.00 5.40
1163 1265 4.559063 CCGCTGCTAGCCTGCCAT 62.559 66.667 19.62 0.00 38.18 4.40
1164 1266 2.971413 CGCTGCTAGCCTGCCATC 60.971 66.667 19.62 0.00 38.18 3.51
1165 1267 2.971413 GCTGCTAGCCTGCCATCG 60.971 66.667 13.29 0.00 34.48 3.84
1166 1268 2.503061 CTGCTAGCCTGCCATCGT 59.497 61.111 13.29 0.00 0.00 3.73
1167 1269 1.742146 CTGCTAGCCTGCCATCGTA 59.258 57.895 13.29 0.00 0.00 3.43
1168 1270 0.104855 CTGCTAGCCTGCCATCGTAA 59.895 55.000 13.29 0.00 0.00 3.18
1173 1275 2.828128 GCCTGCCATCGTAAGCTGC 61.828 63.158 0.00 0.00 30.65 5.25
1174 1276 2.182842 CCTGCCATCGTAAGCTGCC 61.183 63.158 0.00 0.00 30.65 4.85
1175 1277 2.124736 TGCCATCGTAAGCTGCCC 60.125 61.111 0.00 0.00 30.65 5.36
1176 1278 2.190578 GCCATCGTAAGCTGCCCT 59.809 61.111 0.00 0.00 30.65 5.19
1177 1279 1.452108 GCCATCGTAAGCTGCCCTT 60.452 57.895 0.00 0.00 37.57 3.95
1192 1294 1.679898 CCTTCTTCCTCGCCCAGTT 59.320 57.895 0.00 0.00 0.00 3.16
1202 1304 0.034896 TCGCCCAGTTTCAGTTCCTC 59.965 55.000 0.00 0.00 0.00 3.71
1222 1360 1.734707 CGAGTAATCTGGACGCCGTTT 60.735 52.381 0.00 0.00 0.00 3.60
1260 1398 6.471519 GCTGTTTGTATGCTCATCTTTCATTC 59.528 38.462 0.00 0.00 0.00 2.67
1261 1399 7.451501 TGTTTGTATGCTCATCTTTCATTCA 57.548 32.000 0.00 0.00 0.00 2.57
1262 1400 8.058667 TGTTTGTATGCTCATCTTTCATTCAT 57.941 30.769 0.00 0.00 0.00 2.57
1263 1401 8.186163 TGTTTGTATGCTCATCTTTCATTCATC 58.814 33.333 0.00 0.00 0.00 2.92
1264 1402 8.404000 GTTTGTATGCTCATCTTTCATTCATCT 58.596 33.333 0.00 0.00 0.00 2.90
1265 1403 8.515695 TTGTATGCTCATCTTTCATTCATCTT 57.484 30.769 0.00 0.00 0.00 2.40
1266 1404 7.927048 TGTATGCTCATCTTTCATTCATCTTG 58.073 34.615 0.00 0.00 0.00 3.02
1267 1405 7.555195 TGTATGCTCATCTTTCATTCATCTTGT 59.445 33.333 0.00 0.00 0.00 3.16
1268 1406 9.049523 GTATGCTCATCTTTCATTCATCTTGTA 57.950 33.333 0.00 0.00 0.00 2.41
1269 1407 7.312657 TGCTCATCTTTCATTCATCTTGTAC 57.687 36.000 0.00 0.00 0.00 2.90
1270 1408 7.108194 TGCTCATCTTTCATTCATCTTGTACT 58.892 34.615 0.00 0.00 0.00 2.73
1271 1409 8.260114 TGCTCATCTTTCATTCATCTTGTACTA 58.740 33.333 0.00 0.00 0.00 1.82
1272 1410 8.763356 GCTCATCTTTCATTCATCTTGTACTAG 58.237 37.037 0.00 0.00 0.00 2.57
1273 1411 9.814899 CTCATCTTTCATTCATCTTGTACTAGT 57.185 33.333 0.00 0.00 0.00 2.57
1312 1450 2.020720 TGCACCTGTGAATTTGTTCGT 58.979 42.857 0.51 0.00 0.00 3.85
1331 1469 1.002033 GTGCGATCCATTTCATCAGGC 60.002 52.381 0.00 0.00 0.00 4.85
1336 1474 1.750193 TCCATTTCATCAGGCGAACC 58.250 50.000 0.00 0.00 0.00 3.62
1337 1475 0.378257 CCATTTCATCAGGCGAACCG 59.622 55.000 0.00 0.00 42.76 4.44
1348 1486 4.110493 CGAACCGCCTCAGATTCC 57.890 61.111 0.00 0.00 0.00 3.01
1351 1489 2.925162 GAACCGCCTCAGATTCCCGG 62.925 65.000 0.00 0.00 44.19 5.73
1354 1492 4.570874 GCCTCAGATTCCCGGGGC 62.571 72.222 23.50 9.82 0.00 5.80
1442 1595 4.214332 GCATCCCCTCTCGATTTGTTAATC 59.786 45.833 0.00 0.00 37.40 1.75
1448 1601 7.396055 TCCCCTCTCGATTTGTTAATCAAAATT 59.604 33.333 7.12 0.00 46.97 1.82
1449 1602 8.682710 CCCCTCTCGATTTGTTAATCAAAATTA 58.317 33.333 7.12 0.00 46.97 1.40
1450 1603 9.722056 CCCTCTCGATTTGTTAATCAAAATTAG 57.278 33.333 7.12 5.72 46.97 1.73
1505 1659 1.072266 AGACACCCAACTTGCCCATA 58.928 50.000 0.00 0.00 0.00 2.74
1516 1670 3.620488 ACTTGCCCATACCATACACAAG 58.380 45.455 0.00 0.00 39.09 3.16
1558 1712 0.247460 TTCTGTGACTCTGCCGGATG 59.753 55.000 5.05 0.00 0.00 3.51
1559 1713 1.812922 CTGTGACTCTGCCGGATGC 60.813 63.158 5.05 0.00 41.77 3.91
1581 1735 1.195448 CGCACATCGCTATCATTTCCC 59.805 52.381 0.00 0.00 39.08 3.97
1582 1736 2.221169 GCACATCGCTATCATTTCCCA 58.779 47.619 0.00 0.00 37.77 4.37
1584 1738 2.549754 CACATCGCTATCATTTCCCACC 59.450 50.000 0.00 0.00 0.00 4.61
1588 1742 2.158813 TCGCTATCATTTCCCACCCTTC 60.159 50.000 0.00 0.00 0.00 3.46
1590 1744 3.685550 CGCTATCATTTCCCACCCTTCTT 60.686 47.826 0.00 0.00 0.00 2.52
1592 1746 4.339530 GCTATCATTTCCCACCCTTCTTTC 59.660 45.833 0.00 0.00 0.00 2.62
1615 1769 7.424227 TCACAATAAACTAGTAAAACCCACG 57.576 36.000 0.00 0.00 0.00 4.94
1665 1821 2.834549 TGTTCCTTCCTTCTGGCTCTAG 59.165 50.000 0.00 0.00 0.00 2.43
1666 1822 1.490574 TCCTTCCTTCTGGCTCTAGC 58.509 55.000 0.00 0.00 41.14 3.42
1667 1823 1.007721 TCCTTCCTTCTGGCTCTAGCT 59.992 52.381 1.39 0.00 41.70 3.32
1696 1853 5.149273 GCACAATCCTATGACAATAATGCG 58.851 41.667 0.00 0.00 0.00 4.73
1723 1880 4.020617 CCACGCTGCTTCCCCTGA 62.021 66.667 0.00 0.00 0.00 3.86
1728 1898 1.075659 GCTGCTTCCCCTGAACCTT 59.924 57.895 0.00 0.00 0.00 3.50
1750 1920 2.886523 CCTGCCTGACAAAAATCTGTGA 59.113 45.455 0.00 0.00 0.00 3.58
1754 1924 4.341806 TGCCTGACAAAAATCTGTGACATT 59.658 37.500 0.00 0.00 0.00 2.71
1855 2029 1.187087 AGAACAAGGGCTACGAGGAG 58.813 55.000 0.00 0.00 0.00 3.69
1908 2082 2.355986 CGGGGTCCCTCATCGTCAA 61.356 63.158 8.15 0.00 0.00 3.18
2015 2215 7.392494 AAAATTAAGGAGAAATCGACCTTCC 57.608 36.000 7.48 3.63 42.13 3.46
2016 2216 2.674796 AAGGAGAAATCGACCTTCCG 57.325 50.000 5.65 0.00 39.44 4.30
2034 2234 1.871039 CCGTTCTTTCTTCCTTGCGAA 59.129 47.619 0.00 0.00 0.00 4.70
2035 2235 2.349532 CCGTTCTTTCTTCCTTGCGAAC 60.350 50.000 0.00 0.00 0.00 3.95
2036 2236 2.659291 CGTTCTTTCTTCCTTGCGAACG 60.659 50.000 7.76 7.76 44.65 3.95
2037 2237 2.519377 TCTTTCTTCCTTGCGAACGA 57.481 45.000 0.00 0.00 0.00 3.85
2038 2238 3.040147 TCTTTCTTCCTTGCGAACGAT 57.960 42.857 0.00 0.00 0.00 3.73
2039 2239 2.736721 TCTTTCTTCCTTGCGAACGATG 59.263 45.455 0.00 0.00 0.00 3.84
2040 2240 0.796312 TTCTTCCTTGCGAACGATGC 59.204 50.000 0.00 0.00 0.00 3.91
2044 2244 0.673333 TCCTTGCGAACGATGCATGT 60.673 50.000 2.46 0.00 42.84 3.21
2154 2354 0.258774 ACATGGTATTGGAGGCCACC 59.741 55.000 13.09 13.09 34.84 4.61
2179 2380 8.790718 CCAGGTGATTGATTATCCATTCTTTAG 58.209 37.037 0.00 0.00 31.87 1.85
2210 2414 1.134995 TCATTGCAGTAGAGCCTGTCG 60.135 52.381 0.00 0.00 34.84 4.35
2217 2421 0.592754 GTAGAGCCTGTCGATGCGTC 60.593 60.000 0.00 0.00 0.00 5.19
2263 2472 5.866633 TGTTTCGCCCATTATTTTTAGCTTG 59.133 36.000 0.00 0.00 0.00 4.01
2284 2493 6.703607 GCTTGCATCATCTTAGTGTATGTAGT 59.296 38.462 0.00 0.00 0.00 2.73
2285 2494 7.867909 GCTTGCATCATCTTAGTGTATGTAGTA 59.132 37.037 0.00 0.00 0.00 1.82
2295 2504 8.627403 TCTTAGTGTATGTAGTACTTGGTATGC 58.373 37.037 0.00 0.00 34.27 3.14
2332 2541 9.567776 TGTGGTTTGATAAGTTCTTCTTTATCA 57.432 29.630 3.52 3.52 37.56 2.15
2390 2599 6.367422 CAGTTGACTTCTACTTTCATCTGACC 59.633 42.308 0.00 0.00 38.52 4.02
2391 2600 6.042093 AGTTGACTTCTACTTTCATCTGACCA 59.958 38.462 0.00 0.00 0.00 4.02
2395 2604 7.232737 TGACTTCTACTTTCATCTGACCAAGTA 59.767 37.037 5.03 5.03 30.41 2.24
2418 2627 6.515272 AATAAATAAGTCAACCTGGCACTG 57.485 37.500 0.00 0.00 0.00 3.66
2508 2717 2.043652 AGATGGTGCCCATGTGCC 60.044 61.111 10.99 0.00 45.26 5.01
2600 2809 2.094078 TGAGTGCATTGCTAAATTGCCC 60.094 45.455 10.49 0.00 0.00 5.36
2803 3021 5.529800 ACAAGAACCGTATGCTTAACAAGTT 59.470 36.000 0.00 0.00 0.00 2.66
2818 3036 7.221452 GCTTAACAAGTTCCTTTATGCATCATG 59.779 37.037 0.19 0.00 0.00 3.07
2821 3039 7.088589 ACAAGTTCCTTTATGCATCATGTAC 57.911 36.000 0.19 0.00 0.00 2.90
2852 3071 5.088026 ACTTCCTAAGCAGAGGAGTTTAGT 58.912 41.667 6.70 5.27 46.43 2.24
2854 3073 5.662674 TCCTAAGCAGAGGAGTTTAGTTC 57.337 43.478 2.56 0.00 40.89 3.01
3054 3274 5.026038 TCGAAAGGGTCACAAGAAACTTA 57.974 39.130 0.00 0.00 0.00 2.24
3180 3400 2.202987 GATCGCAGCCCAGTCCTG 60.203 66.667 0.00 0.00 0.00 3.86
3195 3415 2.124403 CTGCTCCTGATGGGTGGC 60.124 66.667 0.00 0.00 36.25 5.01
3278 3498 4.137116 TCTGTACTTGTTGCTCACTGTT 57.863 40.909 0.00 0.00 0.00 3.16
3329 3551 4.735338 GCACACAGAAAAAGCAGAGTAAAC 59.265 41.667 0.00 0.00 0.00 2.01
3333 3555 5.049405 CACAGAAAAAGCAGAGTAAACGGAT 60.049 40.000 0.00 0.00 0.00 4.18
3358 3617 0.877071 ATGCCGAGCTGTTCAAACTG 59.123 50.000 0.00 0.00 0.00 3.16
3409 3668 7.462109 GACTTTGTGTCTATAAGCTGATCAG 57.538 40.000 18.84 18.84 42.21 2.90
3493 3752 2.487762 TGCATTCAAGGAAACCGATGTC 59.512 45.455 0.00 0.00 0.00 3.06
3560 3819 0.108138 GACGGCAGAGCTGGTATGTT 60.108 55.000 0.00 0.00 39.57 2.71
3561 3820 0.108138 ACGGCAGAGCTGGTATGTTC 60.108 55.000 0.00 0.00 39.57 3.18
3572 3862 6.039941 AGAGCTGGTATGTTCTACTATGTGAC 59.960 42.308 0.00 0.00 0.00 3.67
3627 3917 8.851541 ATCAAAATGAACAAGGTTGCATATTT 57.148 26.923 0.00 0.00 0.00 1.40
3638 3928 7.039082 ACAAGGTTGCATATTTTACTGGTTCAT 60.039 33.333 0.00 0.00 0.00 2.57
3680 3970 3.691609 GCTATCAGAAACCAACCTGAAGG 59.308 47.826 0.00 0.00 42.02 3.46
3690 3980 2.230660 CAACCTGAAGGAAACCCTGAC 58.769 52.381 2.62 0.00 38.94 3.51
3693 3983 1.545651 CCTGAAGGAAACCCTGACACC 60.546 57.143 0.00 0.00 37.39 4.16
3787 4082 2.060326 ATCGTGATTCACAACGTCGT 57.940 45.000 16.61 0.00 33.40 4.34
3870 4165 0.105039 GGAGGGACGTGATCATGGAC 59.895 60.000 18.97 11.84 0.00 4.02
3981 4276 0.898320 AGGTCACTGAAGATGGGTCG 59.102 55.000 0.00 0.00 0.00 4.79
4021 4316 4.077184 CGGTTGAGGCCCGCAGTA 62.077 66.667 0.00 0.00 38.85 2.74
4023 4318 2.663196 GTTGAGGCCCGCAGTACT 59.337 61.111 0.00 0.00 0.00 2.73
4044 4339 1.937223 GACGAAGAGAGCGAGATGAGA 59.063 52.381 0.00 0.00 0.00 3.27
4056 4351 1.272212 GAGATGAGATCGAGGAAGCCC 59.728 57.143 0.00 0.00 0.00 5.19
4143 4438 2.660670 TCTCCTACTCCCTTCGATCC 57.339 55.000 0.00 0.00 0.00 3.36
4165 4477 7.643569 TCCATAATAAGTGTCGTGGTTAGTA 57.356 36.000 0.00 0.00 0.00 1.82
4197 4537 5.821516 ATTAGCTAGTATCTCGCGCTATT 57.178 39.130 5.56 0.00 33.69 1.73
4218 4559 2.919666 CCATTTGGCGAACTACTTGG 57.080 50.000 0.00 0.00 0.00 3.61
4294 4637 2.798976 TGGAAACACAGAAGCATTGC 57.201 45.000 0.00 0.00 33.40 3.56
4305 4651 5.798934 CACAGAAGCATTGCATCTAAAAGTC 59.201 40.000 15.39 0.00 34.26 3.01
4396 4742 3.969250 ATTCGCCACCGCATTCCGT 62.969 57.895 0.00 0.00 34.38 4.69
4480 4829 1.348036 GTAAGGAGCCACCACTCTGTT 59.652 52.381 0.47 0.00 42.04 3.16
4542 4895 7.402054 AGTATCATGTTTGTTGAACCTATGGA 58.598 34.615 0.00 0.00 37.45 3.41
4544 4897 5.630121 TCATGTTTGTTGAACCTATGGAGT 58.370 37.500 0.00 0.00 37.45 3.85
4545 4898 5.473162 TCATGTTTGTTGAACCTATGGAGTG 59.527 40.000 0.00 0.00 37.45 3.51
4546 4899 4.787551 TGTTTGTTGAACCTATGGAGTGT 58.212 39.130 0.00 0.00 37.45 3.55
4552 4905 4.015872 TGAACCTATGGAGTGTTGTTCC 57.984 45.455 0.00 0.00 33.04 3.62
4562 4915 3.081061 GAGTGTTGTTCCACATGGCATA 58.919 45.455 0.00 0.00 37.82 3.14
4689 5042 3.902086 GAGCTCTACCCGGACGGC 61.902 72.222 0.73 0.00 33.26 5.68
4903 5278 4.649674 GGGTGTTTTCTTTCTCCTTTTCCT 59.350 41.667 0.00 0.00 0.00 3.36
4904 5279 5.128827 GGGTGTTTTCTTTCTCCTTTTCCTT 59.871 40.000 0.00 0.00 0.00 3.36
4927 5302 4.327982 TCTTCTTCCTCTTGACACTGTG 57.672 45.455 6.19 6.19 0.00 3.66
4949 5328 1.228552 CTGGGGGTGTTGGGTTGAG 60.229 63.158 0.00 0.00 0.00 3.02
4950 5329 2.006805 CTGGGGGTGTTGGGTTGAGT 62.007 60.000 0.00 0.00 0.00 3.41
4951 5330 1.530655 GGGGGTGTTGGGTTGAGTG 60.531 63.158 0.00 0.00 0.00 3.51
5028 5910 4.437682 AACCCGATCCATCATTGTGTAT 57.562 40.909 0.00 0.00 0.00 2.29
5032 5938 4.821260 CCCGATCCATCATTGTGTATTCAA 59.179 41.667 0.00 0.00 0.00 2.69
5070 5976 0.383860 GCGTCGGTACAGTTTTGTGC 60.384 55.000 0.00 0.00 38.23 4.57
5073 5979 0.810426 TCGGTACAGTTTTGTGCGCA 60.810 50.000 5.66 5.66 40.40 6.09
5122 6028 1.321445 GTACGCGTTACAAATCGGGTC 59.679 52.381 20.78 1.06 46.79 4.46
5173 6079 3.759086 TCCGGATGCATCTATCTGTCTAC 59.241 47.826 25.28 4.58 32.65 2.59
5174 6080 3.507622 CCGGATGCATCTATCTGTCTACA 59.492 47.826 25.28 0.00 32.65 2.74
5175 6081 4.159321 CCGGATGCATCTATCTGTCTACAT 59.841 45.833 25.28 0.00 32.65 2.29
5176 6082 5.358160 CCGGATGCATCTATCTGTCTACATA 59.642 44.000 25.28 0.00 32.65 2.29
5243 6665 5.851177 GTCAATTGGTAATCGTGTGAACAAG 59.149 40.000 5.42 0.00 0.00 3.16
5258 6680 0.107897 ACAAGGTCGCACACAACTCA 60.108 50.000 0.00 0.00 0.00 3.41
5264 6686 3.064207 GGTCGCACACAACTCATTAAGA 58.936 45.455 0.00 0.00 0.00 2.10
5280 6702 6.210078 TCATTAAGAAAAACCGTTTGCGATT 58.790 32.000 0.00 0.00 41.33 3.34
5297 6719 1.273048 GATTGAGCCAACCATTGCACA 59.727 47.619 0.00 0.00 0.00 4.57
5298 6720 0.388659 TTGAGCCAACCATTGCACAC 59.611 50.000 0.00 0.00 0.00 3.82
5299 6721 1.081242 GAGCCAACCATTGCACACG 60.081 57.895 0.00 0.00 0.00 4.49
5300 6722 1.795170 GAGCCAACCATTGCACACGT 61.795 55.000 0.00 0.00 0.00 4.49
5338 6760 2.587080 GGACTCCCGGTATCACACA 58.413 57.895 0.00 0.00 0.00 3.72
5339 6761 1.120530 GGACTCCCGGTATCACACAT 58.879 55.000 0.00 0.00 0.00 3.21
5340 6762 1.202533 GGACTCCCGGTATCACACATG 60.203 57.143 0.00 0.00 0.00 3.21
5341 6763 1.754803 GACTCCCGGTATCACACATGA 59.245 52.381 0.00 0.00 39.83 3.07
5342 6764 1.757118 ACTCCCGGTATCACACATGAG 59.243 52.381 0.00 0.00 38.57 2.90
5343 6765 1.757118 CTCCCGGTATCACACATGAGT 59.243 52.381 0.00 0.00 38.57 3.41
5344 6766 1.754803 TCCCGGTATCACACATGAGTC 59.245 52.381 0.00 0.00 38.57 3.36
5405 6827 0.999406 CGACGAATTCTCCGTTGCAT 59.001 50.000 3.52 0.00 40.67 3.96
5406 6828 1.393539 CGACGAATTCTCCGTTGCATT 59.606 47.619 3.52 0.00 40.67 3.56
5407 6829 2.774007 GACGAATTCTCCGTTGCATTG 58.226 47.619 3.52 0.00 40.67 2.82
5408 6830 1.135689 ACGAATTCTCCGTTGCATTGC 60.136 47.619 0.46 0.46 36.83 3.56
5409 6831 1.135717 CGAATTCTCCGTTGCATTGCA 60.136 47.619 7.38 7.38 36.47 4.08
5410 6832 2.253603 GAATTCTCCGTTGCATTGCAC 58.746 47.619 11.66 6.03 38.71 4.57
5411 6833 1.246649 ATTCTCCGTTGCATTGCACA 58.753 45.000 11.66 0.00 38.71 4.57
5426 6848 2.029743 CACACGGTTGAACCTTGGG 58.970 57.895 22.51 16.41 41.37 4.12
5489 6911 3.006003 TCACATACAGTTTGTCGCCAGTA 59.994 43.478 0.00 0.00 0.00 2.74
5490 6912 3.122948 CACATACAGTTTGTCGCCAGTAC 59.877 47.826 0.00 0.00 0.00 2.73
5491 6913 2.054687 TACAGTTTGTCGCCAGTACG 57.945 50.000 0.00 0.00 0.00 3.67
5492 6914 0.103572 ACAGTTTGTCGCCAGTACGT 59.896 50.000 0.00 0.00 0.00 3.57
5493 6915 0.506932 CAGTTTGTCGCCAGTACGTG 59.493 55.000 0.00 0.00 0.00 4.49
5494 6916 0.103572 AGTTTGTCGCCAGTACGTGT 59.896 50.000 0.00 0.00 0.00 4.49
5495 6917 0.231279 GTTTGTCGCCAGTACGTGTG 59.769 55.000 0.00 0.00 0.00 3.82
5496 6918 1.492319 TTTGTCGCCAGTACGTGTGC 61.492 55.000 0.00 0.00 0.00 4.57
5497 6919 3.467119 GTCGCCAGTACGTGTGCG 61.467 66.667 14.04 14.04 43.29 5.34
5534 6959 8.255394 ACAGGGTTTAACATTACATTACGTAC 57.745 34.615 0.00 0.00 0.00 3.67
5535 6960 8.096414 ACAGGGTTTAACATTACATTACGTACT 58.904 33.333 0.00 0.00 0.00 2.73
5536 6961 8.598075 CAGGGTTTAACATTACATTACGTACTC 58.402 37.037 0.00 0.00 0.00 2.59
5537 6962 8.534496 AGGGTTTAACATTACATTACGTACTCT 58.466 33.333 0.00 0.00 0.00 3.24
5538 6963 9.801873 GGGTTTAACATTACATTACGTACTCTA 57.198 33.333 0.00 0.00 0.00 2.43
5547 6973 3.957671 TTACGTACTCTATCTGCACCG 57.042 47.619 0.00 0.00 0.00 4.94
5574 7000 1.869767 GCTTATCCATGAGTTGAGCGG 59.130 52.381 0.00 0.00 0.00 5.52
5575 7001 2.743183 GCTTATCCATGAGTTGAGCGGT 60.743 50.000 0.00 0.00 0.00 5.68
5576 7002 3.492656 GCTTATCCATGAGTTGAGCGGTA 60.493 47.826 0.00 0.00 0.00 4.02
5614 7040 5.521735 GCTGACACACATCTTATTCTCGAAT 59.478 40.000 0.00 0.00 34.93 3.34
5616 7042 7.413438 GCTGACACACATCTTATTCTCGAATTT 60.413 37.037 0.00 0.00 32.50 1.82
5642 7068 8.056407 AGAGTTGAAGGACCATTTTATTTAGC 57.944 34.615 0.00 0.00 0.00 3.09
5676 7126 1.243342 TGTGCTTGGCAATCTTCCCG 61.243 55.000 0.00 0.00 41.47 5.14
5677 7127 2.342650 TGCTTGGCAATCTTCCCGC 61.343 57.895 0.00 0.00 34.76 6.13
5715 7165 0.537371 CTCCCACAACCTTGTCCACC 60.537 60.000 0.00 0.00 39.91 4.61
5733 7183 2.821969 CACCACCTTTCCTTCCTTCATG 59.178 50.000 0.00 0.00 0.00 3.07
5751 7201 0.319986 TGAGCACAAACGTCGGCATA 60.320 50.000 0.00 0.00 0.00 3.14
5838 7288 8.893727 ACAATATAGTAACTCAGAATTTGCACC 58.106 33.333 0.00 0.00 0.00 5.01
5839 7289 7.715265 ATATAGTAACTCAGAATTTGCACCG 57.285 36.000 0.00 0.00 0.00 4.94
5840 7290 3.740115 AGTAACTCAGAATTTGCACCGT 58.260 40.909 0.00 0.00 0.00 4.83
5841 7291 4.890088 AGTAACTCAGAATTTGCACCGTA 58.110 39.130 0.00 0.00 0.00 4.02
5842 7292 5.488341 AGTAACTCAGAATTTGCACCGTAT 58.512 37.500 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.034558 GGCACTCAACTGCAAGCTTTTA 59.965 45.455 0.00 0.00 39.08 1.52
1 2 1.202452 GGCACTCAACTGCAAGCTTTT 60.202 47.619 0.00 0.00 39.08 2.27
2 3 0.386838 GGCACTCAACTGCAAGCTTT 59.613 50.000 0.00 0.00 39.08 3.51
3 4 0.466922 AGGCACTCAACTGCAAGCTT 60.467 50.000 0.00 0.00 39.08 3.74
4 5 1.150081 AGGCACTCAACTGCAAGCT 59.850 52.632 0.00 0.00 39.08 3.74
5 6 1.168407 TCAGGCACTCAACTGCAAGC 61.168 55.000 0.00 0.00 39.08 4.01
6 7 0.590195 GTCAGGCACTCAACTGCAAG 59.410 55.000 0.00 0.00 39.08 4.01
7 8 0.181114 AGTCAGGCACTCAACTGCAA 59.819 50.000 0.00 0.00 39.08 4.08
8 9 0.533531 CAGTCAGGCACTCAACTGCA 60.534 55.000 0.00 0.00 40.73 4.41
9 10 0.250038 TCAGTCAGGCACTCAACTGC 60.250 55.000 0.00 0.00 44.39 4.40
10 11 1.069823 AGTCAGTCAGGCACTCAACTG 59.930 52.381 0.00 0.00 45.43 3.16
11 12 1.069823 CAGTCAGTCAGGCACTCAACT 59.930 52.381 0.00 0.00 34.60 3.16
12 13 1.069204 TCAGTCAGTCAGGCACTCAAC 59.931 52.381 0.00 0.00 34.60 3.18
13 14 1.069204 GTCAGTCAGTCAGGCACTCAA 59.931 52.381 0.00 0.00 34.60 3.02
14 15 0.676184 GTCAGTCAGTCAGGCACTCA 59.324 55.000 0.00 0.00 34.60 3.41
15 16 0.965439 AGTCAGTCAGTCAGGCACTC 59.035 55.000 0.00 0.00 34.60 3.51
16 17 0.678395 CAGTCAGTCAGTCAGGCACT 59.322 55.000 0.00 0.00 43.88 4.40
17 18 0.676184 TCAGTCAGTCAGTCAGGCAC 59.324 55.000 0.00 0.00 0.00 5.01
18 19 0.676184 GTCAGTCAGTCAGTCAGGCA 59.324 55.000 0.00 0.00 0.00 4.75
19 20 0.965439 AGTCAGTCAGTCAGTCAGGC 59.035 55.000 0.00 0.00 0.00 4.85
20 21 1.271934 CCAGTCAGTCAGTCAGTCAGG 59.728 57.143 0.00 0.00 0.00 3.86
21 22 2.228582 CTCCAGTCAGTCAGTCAGTCAG 59.771 54.545 0.00 0.00 0.00 3.51
22 23 2.234143 CTCCAGTCAGTCAGTCAGTCA 58.766 52.381 0.00 0.00 0.00 3.41
23 24 2.030363 CACTCCAGTCAGTCAGTCAGTC 60.030 54.545 0.00 0.00 0.00 3.51
24 25 1.959985 CACTCCAGTCAGTCAGTCAGT 59.040 52.381 0.00 0.00 0.00 3.41
25 26 2.234143 TCACTCCAGTCAGTCAGTCAG 58.766 52.381 0.00 0.00 0.00 3.51
26 27 2.362397 GTTCACTCCAGTCAGTCAGTCA 59.638 50.000 0.00 0.00 0.00 3.41
27 28 2.605823 CGTTCACTCCAGTCAGTCAGTC 60.606 54.545 0.00 0.00 0.00 3.51
28 29 1.338337 CGTTCACTCCAGTCAGTCAGT 59.662 52.381 0.00 0.00 0.00 3.41
29 30 1.932604 GCGTTCACTCCAGTCAGTCAG 60.933 57.143 0.00 0.00 0.00 3.51
30 31 0.032130 GCGTTCACTCCAGTCAGTCA 59.968 55.000 0.00 0.00 0.00 3.41
31 32 1.004277 CGCGTTCACTCCAGTCAGTC 61.004 60.000 0.00 0.00 0.00 3.51
32 33 1.007271 CGCGTTCACTCCAGTCAGT 60.007 57.895 0.00 0.00 0.00 3.41
33 34 1.004277 GACGCGTTCACTCCAGTCAG 61.004 60.000 15.53 0.00 0.00 3.51
34 35 1.007734 GACGCGTTCACTCCAGTCA 60.008 57.895 15.53 0.00 0.00 3.41
35 36 0.388649 ATGACGCGTTCACTCCAGTC 60.389 55.000 15.53 0.00 36.92 3.51
36 37 0.388649 GATGACGCGTTCACTCCAGT 60.389 55.000 15.53 0.00 36.92 4.00
37 38 0.388520 TGATGACGCGTTCACTCCAG 60.389 55.000 15.53 0.00 36.92 3.86
38 39 0.388520 CTGATGACGCGTTCACTCCA 60.389 55.000 15.53 5.73 36.92 3.86
39 40 1.078759 CCTGATGACGCGTTCACTCC 61.079 60.000 15.53 0.00 36.92 3.85
40 41 1.687494 GCCTGATGACGCGTTCACTC 61.687 60.000 15.53 8.73 36.92 3.51
41 42 1.738099 GCCTGATGACGCGTTCACT 60.738 57.895 15.53 0.00 36.92 3.41
42 43 2.778679 GCCTGATGACGCGTTCAC 59.221 61.111 15.53 8.41 36.92 3.18
43 44 2.809174 CGCCTGATGACGCGTTCA 60.809 61.111 15.53 13.81 43.35 3.18
49 50 2.607668 TAGAACGGCGCCTGATGACG 62.608 60.000 26.68 11.90 0.00 4.35
50 51 0.459585 TTAGAACGGCGCCTGATGAC 60.460 55.000 26.68 9.66 0.00 3.06
51 52 0.459585 GTTAGAACGGCGCCTGATGA 60.460 55.000 26.68 3.71 0.00 2.92
52 53 1.429148 GGTTAGAACGGCGCCTGATG 61.429 60.000 26.68 11.62 0.00 3.07
53 54 1.153429 GGTTAGAACGGCGCCTGAT 60.153 57.895 26.68 12.92 0.00 2.90
54 55 1.823169 AAGGTTAGAACGGCGCCTGA 61.823 55.000 26.68 0.00 0.00 3.86
55 56 0.953960 AAAGGTTAGAACGGCGCCTG 60.954 55.000 26.68 20.24 0.00 4.85
56 57 0.672711 GAAAGGTTAGAACGGCGCCT 60.673 55.000 26.68 6.32 0.00 5.52
57 58 1.642037 GGAAAGGTTAGAACGGCGCC 61.642 60.000 19.07 19.07 0.00 6.53
58 59 0.672711 AGGAAAGGTTAGAACGGCGC 60.673 55.000 6.90 0.00 0.00 6.53
59 60 1.356938 GAGGAAAGGTTAGAACGGCG 58.643 55.000 4.80 4.80 0.00 6.46
60 61 1.356938 CGAGGAAAGGTTAGAACGGC 58.643 55.000 0.00 0.00 0.00 5.68
61 62 1.274447 ACCGAGGAAAGGTTAGAACGG 59.726 52.381 0.00 0.00 39.29 4.44
62 63 2.603953 GACCGAGGAAAGGTTAGAACG 58.396 52.381 0.00 0.00 43.01 3.95
63 64 2.354503 GGGACCGAGGAAAGGTTAGAAC 60.355 54.545 0.00 0.00 43.01 3.01
64 65 1.904537 GGGACCGAGGAAAGGTTAGAA 59.095 52.381 0.00 0.00 43.01 2.10
65 66 1.078324 AGGGACCGAGGAAAGGTTAGA 59.922 52.381 0.00 0.00 43.01 2.10
66 67 1.569653 AGGGACCGAGGAAAGGTTAG 58.430 55.000 0.00 0.00 43.01 2.34
67 68 1.904537 GAAGGGACCGAGGAAAGGTTA 59.095 52.381 0.00 0.00 43.01 2.85
68 69 0.691332 GAAGGGACCGAGGAAAGGTT 59.309 55.000 0.00 0.00 43.01 3.50
69 70 0.473117 TGAAGGGACCGAGGAAAGGT 60.473 55.000 0.00 0.00 46.16 3.50
70 71 0.690762 TTGAAGGGACCGAGGAAAGG 59.309 55.000 0.00 0.00 0.00 3.11
71 72 2.633488 GATTGAAGGGACCGAGGAAAG 58.367 52.381 0.00 0.00 0.00 2.62
72 73 1.066430 CGATTGAAGGGACCGAGGAAA 60.066 52.381 0.00 0.00 0.00 3.13
73 74 0.535335 CGATTGAAGGGACCGAGGAA 59.465 55.000 0.00 0.00 0.00 3.36
74 75 0.613853 ACGATTGAAGGGACCGAGGA 60.614 55.000 0.00 0.00 0.00 3.71
75 76 0.179108 GACGATTGAAGGGACCGAGG 60.179 60.000 0.00 0.00 0.00 4.63
76 77 0.525668 CGACGATTGAAGGGACCGAG 60.526 60.000 0.00 0.00 0.00 4.63
77 78 0.961857 TCGACGATTGAAGGGACCGA 60.962 55.000 0.00 0.00 0.00 4.69
78 79 0.108992 TTCGACGATTGAAGGGACCG 60.109 55.000 0.00 0.00 0.00 4.79
79 80 2.088950 TTTCGACGATTGAAGGGACC 57.911 50.000 0.00 0.00 0.00 4.46
80 81 3.435671 ACATTTTCGACGATTGAAGGGAC 59.564 43.478 0.00 0.00 0.00 4.46
81 82 3.670625 ACATTTTCGACGATTGAAGGGA 58.329 40.909 0.00 0.00 0.00 4.20
82 83 4.158384 CAACATTTTCGACGATTGAAGGG 58.842 43.478 0.00 0.00 0.00 3.95
83 84 4.158384 CCAACATTTTCGACGATTGAAGG 58.842 43.478 9.18 4.93 0.00 3.46
84 85 4.083537 TCCCAACATTTTCGACGATTGAAG 60.084 41.667 9.18 2.15 0.00 3.02
85 86 3.815962 TCCCAACATTTTCGACGATTGAA 59.184 39.130 9.18 1.42 0.00 2.69
86 87 3.403968 TCCCAACATTTTCGACGATTGA 58.596 40.909 9.18 0.00 0.00 2.57
87 88 3.822594 TCCCAACATTTTCGACGATTG 57.177 42.857 0.00 0.00 0.00 2.67
88 89 5.160641 CAAATCCCAACATTTTCGACGATT 58.839 37.500 0.00 0.00 0.00 3.34
89 90 4.217550 ACAAATCCCAACATTTTCGACGAT 59.782 37.500 0.00 0.00 0.00 3.73
90 91 3.566322 ACAAATCCCAACATTTTCGACGA 59.434 39.130 0.00 0.00 0.00 4.20
91 92 3.668191 CACAAATCCCAACATTTTCGACG 59.332 43.478 0.00 0.00 0.00 5.12
92 93 3.428534 GCACAAATCCCAACATTTTCGAC 59.571 43.478 0.00 0.00 0.00 4.20
93 94 3.648009 GCACAAATCCCAACATTTTCGA 58.352 40.909 0.00 0.00 0.00 3.71
94 95 2.408032 CGCACAAATCCCAACATTTTCG 59.592 45.455 0.00 0.00 0.00 3.46
95 96 3.389221 ACGCACAAATCCCAACATTTTC 58.611 40.909 0.00 0.00 0.00 2.29
96 97 3.389221 GACGCACAAATCCCAACATTTT 58.611 40.909 0.00 0.00 0.00 1.82
97 98 2.606795 CGACGCACAAATCCCAACATTT 60.607 45.455 0.00 0.00 0.00 2.32
98 99 1.068610 CGACGCACAAATCCCAACATT 60.069 47.619 0.00 0.00 0.00 2.71
99 100 0.521291 CGACGCACAAATCCCAACAT 59.479 50.000 0.00 0.00 0.00 2.71
100 101 1.511318 CCGACGCACAAATCCCAACA 61.511 55.000 0.00 0.00 0.00 3.33
101 102 1.209127 CCGACGCACAAATCCCAAC 59.791 57.895 0.00 0.00 0.00 3.77
102 103 1.228003 ACCGACGCACAAATCCCAA 60.228 52.632 0.00 0.00 0.00 4.12
103 104 1.669760 GACCGACGCACAAATCCCA 60.670 57.895 0.00 0.00 0.00 4.37
104 105 2.736682 CGACCGACGCACAAATCCC 61.737 63.158 0.00 0.00 34.51 3.85
105 106 1.735198 TCGACCGACGCACAAATCC 60.735 57.895 0.00 0.00 42.26 3.01
106 107 1.414897 GTCGACCGACGCACAAATC 59.585 57.895 3.51 0.00 42.26 2.17
107 108 3.545911 GTCGACCGACGCACAAAT 58.454 55.556 3.51 0.00 42.26 2.32
119 120 3.736482 CTAGGCAGCGACCGTCGAC 62.736 68.421 24.78 14.97 43.74 4.20
120 121 3.506096 CTAGGCAGCGACCGTCGA 61.506 66.667 24.78 1.29 43.74 4.20
121 122 3.812019 ACTAGGCAGCGACCGTCG 61.812 66.667 16.72 16.72 43.89 5.12
122 123 2.202623 CACTAGGCAGCGACCGTC 60.203 66.667 0.00 0.00 33.69 4.79
123 124 4.436998 GCACTAGGCAGCGACCGT 62.437 66.667 0.00 0.00 43.97 4.83
125 126 2.630592 GTAGGCACTAGGCAGCGACC 62.631 65.000 0.00 0.00 44.14 4.79
126 127 1.227002 GTAGGCACTAGGCAGCGAC 60.227 63.158 0.00 0.00 44.14 5.19
127 128 0.106868 TAGTAGGCACTAGGCAGCGA 60.107 55.000 0.00 0.00 44.14 4.93
128 129 0.030908 GTAGTAGGCACTAGGCAGCG 59.969 60.000 0.00 0.00 44.14 5.18
129 130 1.067821 CTGTAGTAGGCACTAGGCAGC 59.932 57.143 0.00 0.00 44.14 5.25
130 131 2.379972 ACTGTAGTAGGCACTAGGCAG 58.620 52.381 0.00 10.39 44.14 4.85
131 132 2.526888 ACTGTAGTAGGCACTAGGCA 57.473 50.000 0.00 0.00 44.14 4.75
132 133 2.290093 CGTACTGTAGTAGGCACTAGGC 59.710 54.545 0.00 0.00 44.14 3.93
133 134 3.539604 ACGTACTGTAGTAGGCACTAGG 58.460 50.000 10.67 0.00 44.14 3.02
134 135 5.903764 CTACGTACTGTAGTAGGCACTAG 57.096 47.826 10.67 0.00 44.14 2.57
145 146 1.039233 GGCCCCTGCTACGTACTGTA 61.039 60.000 0.00 0.00 37.74 2.74
146 147 2.356780 GGCCCCTGCTACGTACTGT 61.357 63.158 0.00 0.00 37.74 3.55
147 148 1.895020 TTGGCCCCTGCTACGTACTG 61.895 60.000 0.00 0.00 37.74 2.74
148 149 1.611261 TTGGCCCCTGCTACGTACT 60.611 57.895 0.00 0.00 37.74 2.73
149 150 1.449070 GTTGGCCCCTGCTACGTAC 60.449 63.158 0.00 0.00 37.74 3.67
150 151 1.481901 TTGTTGGCCCCTGCTACGTA 61.482 55.000 0.00 0.00 37.74 3.57
151 152 2.346284 TTTGTTGGCCCCTGCTACGT 62.346 55.000 0.00 0.00 37.74 3.57
152 153 1.175983 TTTTGTTGGCCCCTGCTACG 61.176 55.000 0.00 0.00 37.74 3.51
153 154 0.603065 CTTTTGTTGGCCCCTGCTAC 59.397 55.000 0.00 0.00 37.74 3.58
154 155 0.480690 TCTTTTGTTGGCCCCTGCTA 59.519 50.000 0.00 0.00 37.74 3.49
155 156 0.398381 TTCTTTTGTTGGCCCCTGCT 60.398 50.000 0.00 0.00 37.74 4.24
156 157 0.033920 CTTCTTTTGTTGGCCCCTGC 59.966 55.000 0.00 0.00 0.00 4.85
157 158 0.033920 GCTTCTTTTGTTGGCCCCTG 59.966 55.000 0.00 0.00 0.00 4.45
158 159 1.121407 GGCTTCTTTTGTTGGCCCCT 61.121 55.000 0.00 0.00 37.12 4.79
159 160 1.371183 GGCTTCTTTTGTTGGCCCC 59.629 57.895 0.00 0.00 37.12 5.80
160 161 1.006220 CGGCTTCTTTTGTTGGCCC 60.006 57.895 0.00 0.00 39.64 5.80
161 162 1.006220 CCGGCTTCTTTTGTTGGCC 60.006 57.895 0.00 0.00 39.43 5.36
162 163 1.664649 GCCGGCTTCTTTTGTTGGC 60.665 57.895 22.15 0.00 0.00 4.52
163 164 1.006220 GGCCGGCTTCTTTTGTTGG 60.006 57.895 28.56 0.00 0.00 3.77
164 165 0.318955 CTGGCCGGCTTCTTTTGTTG 60.319 55.000 28.56 0.62 0.00 3.33
165 166 1.463553 CCTGGCCGGCTTCTTTTGTT 61.464 55.000 28.56 0.00 0.00 2.83
166 167 1.903404 CCTGGCCGGCTTCTTTTGT 60.903 57.895 28.56 0.00 0.00 2.83
167 168 0.967380 ATCCTGGCCGGCTTCTTTTG 60.967 55.000 28.56 8.29 0.00 2.44
168 169 0.967380 CATCCTGGCCGGCTTCTTTT 60.967 55.000 28.56 4.32 0.00 2.27
169 170 1.379044 CATCCTGGCCGGCTTCTTT 60.379 57.895 28.56 6.12 0.00 2.52
170 171 2.273449 CATCCTGGCCGGCTTCTT 59.727 61.111 28.56 4.91 0.00 2.52
171 172 3.801997 CCATCCTGGCCGGCTTCT 61.802 66.667 28.56 3.90 0.00 2.85
172 173 3.344137 TTCCATCCTGGCCGGCTTC 62.344 63.158 28.56 11.61 37.47 3.86
173 174 3.338250 TTCCATCCTGGCCGGCTT 61.338 61.111 28.56 3.31 37.47 4.35
177 178 3.976701 AAGCGTTCCATCCTGGCCG 62.977 63.158 0.00 0.00 37.47 6.13
180 181 0.527565 CCAAAAGCGTTCCATCCTGG 59.472 55.000 0.00 0.00 39.43 4.45
183 184 1.336795 CCAACCAAAAGCGTTCCATCC 60.337 52.381 0.00 0.00 0.00 3.51
187 188 0.317519 CGACCAACCAAAAGCGTTCC 60.318 55.000 0.00 0.00 0.00 3.62
190 191 2.190841 CCCGACCAACCAAAAGCGT 61.191 57.895 0.00 0.00 0.00 5.07
201 202 4.444838 CGCCGAATGACCCGACCA 62.445 66.667 0.00 0.00 0.00 4.02
230 231 1.883021 GCCATGGAAACGAACCTGG 59.117 57.895 18.40 0.00 0.00 4.45
238 239 2.785258 GTCTCGCGCCATGGAAAC 59.215 61.111 18.40 2.03 0.00 2.78
240 241 2.954020 GATCGTCTCGCGCCATGGAA 62.954 60.000 18.40 0.00 41.07 3.53
241 242 3.484742 GATCGTCTCGCGCCATGGA 62.485 63.158 18.40 0.00 41.07 3.41
243 244 2.278792 TGATCGTCTCGCGCCATG 60.279 61.111 0.00 0.00 41.07 3.66
244 245 2.026734 CTGATCGTCTCGCGCCAT 59.973 61.111 0.00 0.00 41.07 4.40
245 246 3.131478 TCTGATCGTCTCGCGCCA 61.131 61.111 0.00 0.00 41.07 5.69
246 247 2.652496 GTCTGATCGTCTCGCGCC 60.652 66.667 0.00 0.00 41.07 6.53
247 248 3.013990 CGTCTGATCGTCTCGCGC 61.014 66.667 0.00 0.00 41.07 6.86
248 249 1.367078 CTCGTCTGATCGTCTCGCG 60.367 63.158 0.00 0.00 43.01 5.87
249 250 0.315544 GACTCGTCTGATCGTCTCGC 60.316 60.000 0.00 0.00 0.00 5.03
250 251 1.000145 TGACTCGTCTGATCGTCTCG 59.000 55.000 0.00 0.00 0.00 4.04
251 252 2.223157 CCTTGACTCGTCTGATCGTCTC 60.223 54.545 0.00 0.00 0.00 3.36
252 253 1.740585 CCTTGACTCGTCTGATCGTCT 59.259 52.381 0.00 0.00 0.00 4.18
253 254 1.738350 TCCTTGACTCGTCTGATCGTC 59.262 52.381 0.00 0.00 0.00 4.20
254 255 1.822506 TCCTTGACTCGTCTGATCGT 58.177 50.000 0.00 0.00 0.00 3.73
255 256 2.478709 CCTTCCTTGACTCGTCTGATCG 60.479 54.545 0.00 0.00 0.00 3.69
256 257 2.737039 GCCTTCCTTGACTCGTCTGATC 60.737 54.545 0.00 0.00 0.00 2.92
257 258 1.205893 GCCTTCCTTGACTCGTCTGAT 59.794 52.381 0.00 0.00 0.00 2.90
258 259 0.603569 GCCTTCCTTGACTCGTCTGA 59.396 55.000 0.00 0.00 0.00 3.27
259 260 0.734253 CGCCTTCCTTGACTCGTCTG 60.734 60.000 0.00 0.00 0.00 3.51
313 321 1.139095 GGCGACGTCTTCCGATCTT 59.861 57.895 14.70 0.00 40.70 2.40
349 357 2.913578 CAACTGCAAGGGCCAGCA 60.914 61.111 20.31 20.31 39.30 4.41
352 360 0.899717 GAATCCAACTGCAAGGGCCA 60.900 55.000 6.18 0.00 39.30 5.36
353 361 1.893062 GAATCCAACTGCAAGGGCC 59.107 57.895 0.00 0.00 39.30 5.80
357 365 1.466167 CACCTCGAATCCAACTGCAAG 59.534 52.381 0.00 0.00 42.29 4.01
358 366 1.202758 ACACCTCGAATCCAACTGCAA 60.203 47.619 0.00 0.00 0.00 4.08
359 367 0.396435 ACACCTCGAATCCAACTGCA 59.604 50.000 0.00 0.00 0.00 4.41
360 368 2.094182 TCTACACCTCGAATCCAACTGC 60.094 50.000 0.00 0.00 0.00 4.40
361 369 3.868757 TCTACACCTCGAATCCAACTG 57.131 47.619 0.00 0.00 0.00 3.16
362 370 4.527038 TCTTTCTACACCTCGAATCCAACT 59.473 41.667 0.00 0.00 0.00 3.16
364 372 5.477607 TTCTTTCTACACCTCGAATCCAA 57.522 39.130 0.00 0.00 0.00 3.53
365 373 5.477607 TTTCTTTCTACACCTCGAATCCA 57.522 39.130 0.00 0.00 0.00 3.41
366 374 5.220681 GCATTTCTTTCTACACCTCGAATCC 60.221 44.000 0.00 0.00 0.00 3.01
368 376 5.122396 GTGCATTTCTTTCTACACCTCGAAT 59.878 40.000 0.00 0.00 0.00 3.34
369 377 4.451096 GTGCATTTCTTTCTACACCTCGAA 59.549 41.667 0.00 0.00 0.00 3.71
370 378 3.994392 GTGCATTTCTTTCTACACCTCGA 59.006 43.478 0.00 0.00 0.00 4.04
371 379 3.997021 AGTGCATTTCTTTCTACACCTCG 59.003 43.478 0.00 0.00 0.00 4.63
373 381 6.296026 TGTTAGTGCATTTCTTTCTACACCT 58.704 36.000 0.00 0.00 0.00 4.00
374 382 6.554334 TGTTAGTGCATTTCTTTCTACACC 57.446 37.500 0.00 0.00 0.00 4.16
375 383 9.118236 GATTTGTTAGTGCATTTCTTTCTACAC 57.882 33.333 0.00 0.00 0.00 2.90
376 384 9.066892 AGATTTGTTAGTGCATTTCTTTCTACA 57.933 29.630 0.00 0.00 0.00 2.74
377 385 9.334693 CAGATTTGTTAGTGCATTTCTTTCTAC 57.665 33.333 0.00 0.00 0.00 2.59
378 386 8.514594 CCAGATTTGTTAGTGCATTTCTTTCTA 58.485 33.333 0.00 0.00 0.00 2.10
381 389 7.014615 AGACCAGATTTGTTAGTGCATTTCTTT 59.985 33.333 0.00 0.00 0.00 2.52
382 390 6.491403 AGACCAGATTTGTTAGTGCATTTCTT 59.509 34.615 0.00 0.00 0.00 2.52
383 391 6.006449 AGACCAGATTTGTTAGTGCATTTCT 58.994 36.000 0.00 0.00 0.00 2.52
384 392 6.088824 CAGACCAGATTTGTTAGTGCATTTC 58.911 40.000 0.00 0.00 0.00 2.17
385 393 5.047802 CCAGACCAGATTTGTTAGTGCATTT 60.048 40.000 0.00 0.00 0.00 2.32
386 394 4.460382 CCAGACCAGATTTGTTAGTGCATT 59.540 41.667 0.00 0.00 0.00 3.56
387 395 4.012374 CCAGACCAGATTTGTTAGTGCAT 58.988 43.478 0.00 0.00 0.00 3.96
389 397 2.749621 CCCAGACCAGATTTGTTAGTGC 59.250 50.000 0.00 0.00 0.00 4.40
390 398 2.749621 GCCCAGACCAGATTTGTTAGTG 59.250 50.000 0.00 0.00 0.00 2.74
391 399 2.615493 CGCCCAGACCAGATTTGTTAGT 60.615 50.000 0.00 0.00 0.00 2.24
392 400 2.009774 CGCCCAGACCAGATTTGTTAG 58.990 52.381 0.00 0.00 0.00 2.34
393 401 1.339631 CCGCCCAGACCAGATTTGTTA 60.340 52.381 0.00 0.00 0.00 2.41
442 466 1.205657 CGTACGGGTGAAATGATCGG 58.794 55.000 7.57 0.00 0.00 4.18
476 503 2.515979 TTGGTGGCTGGCGAGAGAA 61.516 57.895 0.00 0.00 0.00 2.87
502 536 3.093172 TGGTGGTGTGCAGGGTGA 61.093 61.111 0.00 0.00 0.00 4.02
674 728 4.646877 GGTTTCGCCGGGTGGGAA 62.647 66.667 2.18 0.57 43.45 3.97
795 857 2.603580 GGAAATCCTGGAGCCCCC 59.396 66.667 1.52 0.00 0.00 5.40
901 963 2.776913 GCGACGAGGGAGGAAGAGG 61.777 68.421 0.00 0.00 0.00 3.69
902 964 2.776913 GGCGACGAGGGAGGAAGAG 61.777 68.421 0.00 0.00 0.00 2.85
903 965 2.754658 GGCGACGAGGGAGGAAGA 60.755 66.667 0.00 0.00 0.00 2.87
913 975 1.077285 TAGTGGGATCAGGCGACGA 60.077 57.895 0.00 0.00 0.00 4.20
915 977 1.442148 GGTAGTGGGATCAGGCGAC 59.558 63.158 0.00 0.00 0.00 5.19
917 979 2.808206 GGGGTAGTGGGATCAGGCG 61.808 68.421 0.00 0.00 0.00 5.52
934 996 1.084370 GGAGACGAGAAATGCGGTGG 61.084 60.000 0.00 0.00 0.00 4.61
935 997 0.389817 TGGAGACGAGAAATGCGGTG 60.390 55.000 0.00 0.00 0.00 4.94
936 998 0.389948 GTGGAGACGAGAAATGCGGT 60.390 55.000 0.00 0.00 0.00 5.68
986 1076 4.161295 TCATGCCGCCTCCTTCCG 62.161 66.667 0.00 0.00 0.00 4.30
987 1077 2.203126 CTCATGCCGCCTCCTTCC 60.203 66.667 0.00 0.00 0.00 3.46
988 1078 2.203126 CCTCATGCCGCCTCCTTC 60.203 66.667 0.00 0.00 0.00 3.46
989 1079 3.801997 CCCTCATGCCGCCTCCTT 61.802 66.667 0.00 0.00 0.00 3.36
1147 1249 2.971413 GATGGCAGGCTAGCAGCG 60.971 66.667 18.24 4.93 43.62 5.18
1150 1252 0.104855 CTTACGATGGCAGGCTAGCA 59.895 55.000 18.24 0.00 35.83 3.49
1153 1255 0.104855 CAGCTTACGATGGCAGGCTA 59.895 55.000 0.00 0.00 0.00 3.93
1154 1256 1.153289 CAGCTTACGATGGCAGGCT 60.153 57.895 0.00 0.00 0.00 4.58
1155 1257 2.828128 GCAGCTTACGATGGCAGGC 61.828 63.158 0.00 0.00 0.00 4.85
1162 1264 1.134371 GGAAGAAGGGCAGCTTACGAT 60.134 52.381 0.00 0.00 0.00 3.73
1163 1265 0.249398 GGAAGAAGGGCAGCTTACGA 59.751 55.000 0.00 0.00 0.00 3.43
1164 1266 0.250513 AGGAAGAAGGGCAGCTTACG 59.749 55.000 0.00 0.00 30.19 3.18
1165 1267 1.740718 CGAGGAAGAAGGGCAGCTTAC 60.741 57.143 0.00 0.00 0.00 2.34
1166 1268 0.537188 CGAGGAAGAAGGGCAGCTTA 59.463 55.000 0.00 0.00 0.00 3.09
1167 1269 1.298014 CGAGGAAGAAGGGCAGCTT 59.702 57.895 0.00 0.00 0.00 3.74
1168 1270 2.985456 CGAGGAAGAAGGGCAGCT 59.015 61.111 0.00 0.00 0.00 4.24
1173 1275 1.842381 AACTGGGCGAGGAAGAAGGG 61.842 60.000 0.51 0.00 0.00 3.95
1174 1276 0.036875 AAACTGGGCGAGGAAGAAGG 59.963 55.000 0.51 0.00 0.00 3.46
1175 1277 1.270839 TGAAACTGGGCGAGGAAGAAG 60.271 52.381 0.51 0.00 0.00 2.85
1176 1278 0.762418 TGAAACTGGGCGAGGAAGAA 59.238 50.000 0.51 0.00 0.00 2.52
1177 1279 0.321671 CTGAAACTGGGCGAGGAAGA 59.678 55.000 0.51 0.00 0.00 2.87
1192 1294 4.158025 GTCCAGATTACTCGAGGAACTGAA 59.842 45.833 27.59 14.74 41.55 3.02
1202 1304 0.179145 AACGGCGTCCAGATTACTCG 60.179 55.000 15.17 0.00 0.00 4.18
1222 1360 1.933181 CAAACAGCACAGACGAACAGA 59.067 47.619 0.00 0.00 0.00 3.41
1267 1405 8.446273 CAAAACGAAGCAGTACTACTACTAGTA 58.554 37.037 1.89 1.89 34.79 1.82
1268 1406 7.303998 CAAAACGAAGCAGTACTACTACTAGT 58.696 38.462 0.00 0.00 37.04 2.57
1269 1407 6.250951 GCAAAACGAAGCAGTACTACTACTAG 59.749 42.308 0.00 0.00 31.46 2.57
1270 1408 6.088824 GCAAAACGAAGCAGTACTACTACTA 58.911 40.000 0.00 0.00 31.46 1.82
1271 1409 4.922103 GCAAAACGAAGCAGTACTACTACT 59.078 41.667 0.00 0.00 33.01 2.57
1272 1410 4.682860 TGCAAAACGAAGCAGTACTACTAC 59.317 41.667 0.00 0.00 35.51 2.73
1273 1411 4.682860 GTGCAAAACGAAGCAGTACTACTA 59.317 41.667 0.00 0.00 42.14 1.82
1274 1412 3.493503 GTGCAAAACGAAGCAGTACTACT 59.506 43.478 0.00 0.00 42.14 2.57
1275 1413 3.363673 GGTGCAAAACGAAGCAGTACTAC 60.364 47.826 0.00 0.00 42.14 2.73
1276 1414 2.803956 GGTGCAAAACGAAGCAGTACTA 59.196 45.455 0.00 0.00 42.14 1.82
1278 1416 1.602377 AGGTGCAAAACGAAGCAGTAC 59.398 47.619 0.00 0.00 42.14 2.73
1279 1417 1.601903 CAGGTGCAAAACGAAGCAGTA 59.398 47.619 0.00 0.00 42.14 2.74
1280 1418 0.381801 CAGGTGCAAAACGAAGCAGT 59.618 50.000 0.00 0.00 42.14 4.40
1281 1419 0.381801 ACAGGTGCAAAACGAAGCAG 59.618 50.000 0.00 0.00 42.14 4.24
1282 1420 0.100325 CACAGGTGCAAAACGAAGCA 59.900 50.000 0.00 0.00 38.65 3.91
1283 1421 0.380378 TCACAGGTGCAAAACGAAGC 59.620 50.000 0.00 0.00 0.00 3.86
1284 1422 2.842208 TTCACAGGTGCAAAACGAAG 57.158 45.000 0.00 0.00 0.00 3.79
1285 1423 3.791973 AATTCACAGGTGCAAAACGAA 57.208 38.095 0.00 0.00 0.00 3.85
1287 1425 3.186119 ACAAATTCACAGGTGCAAAACG 58.814 40.909 0.00 0.00 0.00 3.60
1288 1426 4.259770 CGAACAAATTCACAGGTGCAAAAC 60.260 41.667 0.00 0.00 34.14 2.43
1289 1427 3.862267 CGAACAAATTCACAGGTGCAAAA 59.138 39.130 0.00 0.00 34.14 2.44
1312 1450 1.311859 GCCTGATGAAATGGATCGCA 58.688 50.000 0.00 0.00 0.00 5.10
1331 1469 1.521681 GGGAATCTGAGGCGGTTCG 60.522 63.158 0.00 0.00 0.00 3.95
1336 1474 4.241555 CCCCGGGAATCTGAGGCG 62.242 72.222 26.32 0.00 0.00 5.52
1337 1475 4.570874 GCCCCGGGAATCTGAGGC 62.571 72.222 26.32 10.71 0.00 4.70
1354 1492 1.329599 GGCAAGTTATAAACGGGCGAG 59.670 52.381 0.00 0.00 36.58 5.03
1359 1497 1.746787 GGTGGGGCAAGTTATAAACGG 59.253 52.381 0.00 0.00 36.23 4.44
1361 1499 1.746787 CCGGTGGGGCAAGTTATAAAC 59.253 52.381 0.00 0.00 0.00 2.01
1362 1500 1.634459 TCCGGTGGGGCAAGTTATAAA 59.366 47.619 0.00 0.00 34.94 1.40
1363 1501 1.287217 TCCGGTGGGGCAAGTTATAA 58.713 50.000 0.00 0.00 34.94 0.98
1365 1503 0.182775 GATCCGGTGGGGCAAGTTAT 59.817 55.000 0.00 0.00 34.94 1.89
1366 1504 1.605453 GATCCGGTGGGGCAAGTTA 59.395 57.895 0.00 0.00 34.94 2.24
1367 1505 2.355115 GATCCGGTGGGGCAAGTT 59.645 61.111 0.00 0.00 34.94 2.66
1368 1506 3.728373 GGATCCGGTGGGGCAAGT 61.728 66.667 0.00 0.00 34.94 3.16
1442 1595 3.606687 AGCAGACCCGGTACTAATTTTG 58.393 45.455 0.00 0.00 0.00 2.44
1448 1601 0.613853 AGCAAGCAGACCCGGTACTA 60.614 55.000 0.00 0.00 0.00 1.82
1449 1602 1.889530 GAGCAAGCAGACCCGGTACT 61.890 60.000 0.00 0.00 0.00 2.73
1450 1603 1.448013 GAGCAAGCAGACCCGGTAC 60.448 63.158 0.00 0.00 0.00 3.34
1505 1659 7.817418 AATGTACAGTTTTCTTGTGTATGGT 57.183 32.000 0.33 0.00 0.00 3.55
1581 1735 7.745620 ACTAGTTTATTGTGAAAGAAGGGTG 57.254 36.000 0.00 0.00 0.00 4.61
1582 1736 9.856162 TTTACTAGTTTATTGTGAAAGAAGGGT 57.144 29.630 0.00 0.00 0.00 4.34
1588 1742 9.673454 GTGGGTTTTACTAGTTTATTGTGAAAG 57.327 33.333 0.00 0.00 0.00 2.62
1590 1744 7.498570 ACGTGGGTTTTACTAGTTTATTGTGAA 59.501 33.333 0.00 0.00 0.00 3.18
1592 1746 7.193377 ACGTGGGTTTTACTAGTTTATTGTG 57.807 36.000 0.00 0.00 0.00 3.33
1615 1769 1.936547 GTCTGGATCTTTGATGGCGAC 59.063 52.381 0.00 0.00 0.00 5.19
1665 1821 1.065102 CATAGGATTGTGCACAGCAGC 59.935 52.381 20.59 9.06 40.08 5.25
1666 1822 2.353889 GTCATAGGATTGTGCACAGCAG 59.646 50.000 20.59 7.32 40.08 4.24
1667 1823 2.290197 TGTCATAGGATTGTGCACAGCA 60.290 45.455 20.59 6.67 35.60 4.41
1696 1853 2.644992 CAGCGTGGCTCCAAAACC 59.355 61.111 0.00 0.00 36.40 3.27
1723 1880 2.452600 TTTTGTCAGGCAGGAAGGTT 57.547 45.000 0.00 0.00 0.00 3.50
1728 1898 2.886523 CACAGATTTTTGTCAGGCAGGA 59.113 45.455 0.00 0.00 0.00 3.86
1750 1920 1.260544 GCCTGGCTGGAGAAAAATGT 58.739 50.000 15.36 0.00 38.35 2.71
1754 1924 1.895131 GATTTGCCTGGCTGGAGAAAA 59.105 47.619 21.03 10.97 38.35 2.29
1855 2029 3.938963 TGTGGAAGAAGGCGAATATGTTC 59.061 43.478 0.00 0.00 0.00 3.18
1891 2065 1.221021 GTTGACGATGAGGGACCCC 59.779 63.158 7.00 1.17 0.00 4.95
2015 2215 2.904915 GTTCGCAAGGAAGAAAGAACG 58.095 47.619 0.00 0.00 34.69 3.95
2016 2216 2.542595 TCGTTCGCAAGGAAGAAAGAAC 59.457 45.455 0.00 0.00 34.69 3.01
2034 2234 2.079158 CAGTGGAAGAACATGCATCGT 58.921 47.619 0.00 0.00 0.00 3.73
2035 2235 2.349590 TCAGTGGAAGAACATGCATCG 58.650 47.619 0.00 0.00 0.00 3.84
2036 2236 6.630444 AATATCAGTGGAAGAACATGCATC 57.370 37.500 0.00 0.00 0.00 3.91
2037 2237 7.093640 ACAAAATATCAGTGGAAGAACATGCAT 60.094 33.333 0.00 0.00 0.00 3.96
2038 2238 6.209192 ACAAAATATCAGTGGAAGAACATGCA 59.791 34.615 0.00 0.00 0.00 3.96
2039 2239 6.624423 ACAAAATATCAGTGGAAGAACATGC 58.376 36.000 0.00 0.00 0.00 4.06
2154 2354 8.790718 CCTAAAGAATGGATAATCAATCACCTG 58.209 37.037 0.00 0.00 36.20 4.00
2194 2395 0.457443 CATCGACAGGCTCTACTGCA 59.543 55.000 0.00 0.00 42.21 4.41
2195 2396 0.873743 GCATCGACAGGCTCTACTGC 60.874 60.000 0.00 0.00 42.21 4.40
2196 2397 0.593518 CGCATCGACAGGCTCTACTG 60.594 60.000 0.00 0.00 44.03 2.74
2210 2414 1.922570 ATAGACAACCACGACGCATC 58.077 50.000 0.00 0.00 0.00 3.91
2217 2421 4.749245 AAGCAAAGAATAGACAACCACG 57.251 40.909 0.00 0.00 0.00 4.94
2263 2472 9.186323 CAAGTACTACATACACTAAGATGATGC 57.814 37.037 0.00 0.00 36.09 3.91
2284 2493 1.553248 ACAAGAGCGGCATACCAAGTA 59.447 47.619 1.45 0.00 34.57 2.24
2285 2494 0.324943 ACAAGAGCGGCATACCAAGT 59.675 50.000 1.45 0.00 34.57 3.16
2295 2504 0.029300 CAAACCACACACAAGAGCGG 59.971 55.000 0.00 0.00 0.00 5.52
2332 2541 3.876300 GACGAAATCCAGCACGCT 58.124 55.556 0.00 0.00 0.00 5.07
2390 2599 7.968405 GTGCCAGGTTGACTTATTTATTACTTG 59.032 37.037 0.00 0.00 0.00 3.16
2391 2600 7.888546 AGTGCCAGGTTGACTTATTTATTACTT 59.111 33.333 0.00 0.00 0.00 2.24
2395 2604 5.418840 CCAGTGCCAGGTTGACTTATTTATT 59.581 40.000 0.00 0.00 0.00 1.40
2402 2611 0.773644 ATCCAGTGCCAGGTTGACTT 59.226 50.000 0.00 0.00 0.00 3.01
2418 2627 2.278854 GCTGAGCTCTGAAGTTGATCC 58.721 52.381 23.35 0.00 0.00 3.36
2508 2717 6.926826 GGTTGTGGGAGTAATTTAAAACCTTG 59.073 38.462 0.00 0.00 33.38 3.61
2600 2809 1.831389 CGCAGACACAAACTGGACCG 61.831 60.000 0.00 0.00 36.09 4.79
2771 2984 5.974108 AGCATACGGTTCTTGTAGTTGTAT 58.026 37.500 0.00 0.00 0.00 2.29
2774 2987 6.146510 TGTTAAGCATACGGTTCTTGTAGTTG 59.853 38.462 0.00 0.00 34.01 3.16
2803 3021 4.202461 GGGAGGTACATGATGCATAAAGGA 60.202 45.833 0.00 0.00 0.00 3.36
2818 3036 4.028825 TGCTTAGGAAGTTAGGGAGGTAC 58.971 47.826 0.00 0.00 0.00 3.34
2821 3039 3.375699 TCTGCTTAGGAAGTTAGGGAGG 58.624 50.000 0.00 0.00 0.00 4.30
2956 3176 6.700960 GGTGTCAGATGAACAGAGATCATTAG 59.299 42.308 0.00 0.00 37.64 1.73
2971 3191 4.818546 AGACTTCAGTTTTGGTGTCAGATG 59.181 41.667 0.00 0.00 32.97 2.90
2972 3192 5.041191 AGACTTCAGTTTTGGTGTCAGAT 57.959 39.130 0.00 0.00 32.97 2.90
3054 3274 5.724854 TGTGGAGAATAGCCTAGTTACCTTT 59.275 40.000 0.00 0.00 0.00 3.11
3180 3400 4.864334 CCGCCACCCATCAGGAGC 62.864 72.222 0.00 0.00 39.89 4.70
3195 3415 2.045045 TTGCCAGCTCCCATTCCG 60.045 61.111 0.00 0.00 0.00 4.30
3278 3498 4.142622 CGTGCAGATTGCCAGAAGAAATTA 60.143 41.667 0.00 0.00 44.23 1.40
3301 3521 2.203401 TGCTTTTTCTGTGTGCAATGC 58.797 42.857 0.00 0.00 0.00 3.56
3303 3523 3.382546 ACTCTGCTTTTTCTGTGTGCAAT 59.617 39.130 0.00 0.00 33.07 3.56
3311 3531 5.179368 TCATCCGTTTACTCTGCTTTTTCTG 59.821 40.000 0.00 0.00 0.00 3.02
3312 3532 5.305585 TCATCCGTTTACTCTGCTTTTTCT 58.694 37.500 0.00 0.00 0.00 2.52
3313 3533 5.408604 TCTCATCCGTTTACTCTGCTTTTTC 59.591 40.000 0.00 0.00 0.00 2.29
3329 3551 0.531532 AGCTCGGCATTTCTCATCCG 60.532 55.000 0.00 0.00 42.96 4.18
3333 3555 1.270785 TGAACAGCTCGGCATTTCTCA 60.271 47.619 0.00 0.00 0.00 3.27
3358 3617 5.809719 ATTTAGCTGCTCTACTTGCTTTC 57.190 39.130 4.91 0.00 37.02 2.62
3409 3668 9.899226 GACCAAAATGATCTACAAATAATAGGC 57.101 33.333 0.00 0.00 0.00 3.93
3505 3764 1.980765 TGGTGACCTCTTGAGCTGATT 59.019 47.619 2.11 0.00 0.00 2.57
3653 3943 2.096013 GGTTGGTTTCTGATAGCGCTTC 59.904 50.000 18.68 13.87 0.00 3.86
3659 3949 5.165961 TCCTTCAGGTTGGTTTCTGATAG 57.834 43.478 0.00 0.00 39.42 2.08
3680 3970 2.514458 ATGATGGGTGTCAGGGTTTC 57.486 50.000 0.00 0.00 0.00 2.78
3690 3980 9.520204 GTTTCAGTATAATTGAAATGATGGGTG 57.480 33.333 13.66 0.00 43.90 4.61
3787 4082 1.337728 CGATGACTGGTGCACCTGTAA 60.338 52.381 38.71 34.14 46.31 2.41
3876 4171 1.244019 AAAATGGCTCCCACGACAGC 61.244 55.000 0.00 0.00 35.80 4.40
3981 4276 2.297597 CTCCCAGTAATCCTCCGTGATC 59.702 54.545 0.00 0.00 0.00 2.92
4021 4316 1.400142 CATCTCGCTCTCTTCGTCAGT 59.600 52.381 0.00 0.00 0.00 3.41
4023 4318 1.668237 CTCATCTCGCTCTCTTCGTCA 59.332 52.381 0.00 0.00 0.00 4.35
4044 4339 2.499827 GCGGTAGGGCTTCCTCGAT 61.500 63.158 0.00 0.00 41.96 3.59
4143 4438 8.752254 CATGTACTAACCACGACACTTATTATG 58.248 37.037 0.00 0.00 0.00 1.90
4165 4477 6.571344 CGAGATACTAGCTAATTCTGGCATGT 60.571 42.308 0.00 0.00 0.00 3.21
4217 4558 0.450983 GATGCTCAGTGCTTGAAGCC 59.549 55.000 15.43 6.14 41.51 4.35
4218 4559 1.397692 GAGATGCTCAGTGCTTGAAGC 59.602 52.381 10.84 10.84 43.37 3.86
4226 4567 1.271001 TGTTGGGTGAGATGCTCAGTG 60.271 52.381 0.00 0.00 41.46 3.66
4232 4573 0.393537 CCCTCTGTTGGGTGAGATGC 60.394 60.000 0.00 0.00 42.25 3.91
4293 4636 3.736126 GCCAATGCCAGACTTTTAGATGC 60.736 47.826 0.00 0.00 0.00 3.91
4294 4637 3.444742 TGCCAATGCCAGACTTTTAGATG 59.555 43.478 0.00 0.00 36.33 2.90
4305 4651 2.119655 GCTCTCCTGCCAATGCCAG 61.120 63.158 0.00 0.00 36.33 4.85
4396 4742 3.405592 GACGACGCCGCAGTATCCA 62.406 63.158 0.00 0.00 39.95 3.41
4462 4808 0.398318 GAACAGAGTGGTGGCTCCTT 59.602 55.000 7.19 0.00 36.20 3.36
4480 4829 3.057596 GGATTGTTCATTGTTGGCTTCGA 60.058 43.478 0.00 0.00 0.00 3.71
4552 4905 3.501062 CCTATCAACTGCTATGCCATGTG 59.499 47.826 0.00 0.00 0.00 3.21
4553 4906 3.497405 CCCTATCAACTGCTATGCCATGT 60.497 47.826 0.00 0.00 0.00 3.21
4562 4915 1.561542 CCTTCCACCCTATCAACTGCT 59.438 52.381 0.00 0.00 0.00 4.24
4903 5278 5.586243 CACAGTGTCAAGAGGAAGAAGAAAA 59.414 40.000 0.00 0.00 0.00 2.29
4904 5279 5.104941 TCACAGTGTCAAGAGGAAGAAGAAA 60.105 40.000 0.00 0.00 0.00 2.52
4927 5302 4.366684 CCCAACACCCCCAGCCTC 62.367 72.222 0.00 0.00 0.00 4.70
4949 5328 2.722094 TCCATCATTTAGCACCACCAC 58.278 47.619 0.00 0.00 0.00 4.16
4950 5329 3.289836 CATCCATCATTTAGCACCACCA 58.710 45.455 0.00 0.00 0.00 4.17
4951 5330 2.624838 CCATCCATCATTTAGCACCACC 59.375 50.000 0.00 0.00 0.00 4.61
5028 5910 3.933332 TCGTGTGTGTGTATGTGTTTGAA 59.067 39.130 0.00 0.00 0.00 2.69
5032 5938 1.864711 GCTCGTGTGTGTGTATGTGTT 59.135 47.619 0.00 0.00 0.00 3.32
5038 5944 1.369568 CGACGCTCGTGTGTGTGTA 60.370 57.895 8.62 0.00 37.00 2.90
5045 5951 1.789078 AACTGTACCGACGCTCGTGT 61.789 55.000 0.00 0.00 38.40 4.49
5070 5976 5.580911 TCATATCGAAGATTGTCAATGCG 57.419 39.130 1.88 4.47 45.12 4.73
5073 5979 8.715998 GTTATGCTCATATCGAAGATTGTCAAT 58.284 33.333 0.00 0.00 45.12 2.57
5135 6041 0.830648 CGGACCAGCTCCATTTCCTA 59.169 55.000 0.00 0.00 39.39 2.94
5212 6634 5.584649 ACACGATTACCAATTGACGAATCAT 59.415 36.000 7.12 0.00 33.85 2.45
5213 6635 4.932799 ACACGATTACCAATTGACGAATCA 59.067 37.500 7.12 0.00 0.00 2.57
5214 6636 5.062934 TCACACGATTACCAATTGACGAATC 59.937 40.000 7.12 11.04 0.00 2.52
5215 6637 4.932799 TCACACGATTACCAATTGACGAAT 59.067 37.500 7.12 3.19 0.00 3.34
5243 6665 3.064207 TCTTAATGAGTTGTGTGCGACC 58.936 45.455 0.00 0.00 0.00 4.79
5258 6680 6.210078 TCAATCGCAAACGGTTTTTCTTAAT 58.790 32.000 2.79 0.00 40.49 1.40
5264 6686 2.124122 GCTCAATCGCAAACGGTTTTT 58.876 42.857 2.79 0.00 40.49 1.94
5280 6702 1.794151 CGTGTGCAATGGTTGGCTCA 61.794 55.000 0.00 0.00 0.00 4.26
5334 6756 2.749280 TGATTGAGCGACTCATGTGT 57.251 45.000 9.78 0.00 40.39 3.72
5335 6757 3.434641 ACTTTGATTGAGCGACTCATGTG 59.565 43.478 9.78 0.00 40.39 3.21
5336 6758 3.434641 CACTTTGATTGAGCGACTCATGT 59.565 43.478 9.78 3.55 40.39 3.21
5337 6759 3.434641 ACACTTTGATTGAGCGACTCATG 59.565 43.478 9.78 6.60 40.39 3.07
5338 6760 3.434641 CACACTTTGATTGAGCGACTCAT 59.565 43.478 9.78 2.29 40.39 2.90
5339 6761 2.802247 CACACTTTGATTGAGCGACTCA 59.198 45.455 5.59 5.59 38.87 3.41
5340 6762 2.802816 ACACACTTTGATTGAGCGACTC 59.197 45.455 0.00 0.00 0.00 3.36
5341 6763 2.545526 CACACACTTTGATTGAGCGACT 59.454 45.455 0.00 0.00 0.00 4.18
5342 6764 2.908634 CACACACTTTGATTGAGCGAC 58.091 47.619 0.00 0.00 0.00 5.19
5343 6765 1.264020 GCACACACTTTGATTGAGCGA 59.736 47.619 0.00 0.00 0.00 4.93
5344 6766 1.678360 GCACACACTTTGATTGAGCG 58.322 50.000 0.00 0.00 0.00 5.03
5389 6811 1.135717 TGCAATGCAACGGAGAATTCG 60.136 47.619 5.01 0.00 36.91 3.34
5405 6827 0.453793 CAAGGTTCAACCGTGTGCAA 59.546 50.000 13.96 0.00 44.90 4.08
5406 6828 1.380403 CCAAGGTTCAACCGTGTGCA 61.380 55.000 19.69 0.00 44.65 4.57
5407 6829 1.358759 CCAAGGTTCAACCGTGTGC 59.641 57.895 19.69 0.00 44.65 4.57
5408 6830 2.029743 CCCAAGGTTCAACCGTGTG 58.970 57.895 19.69 6.17 44.65 3.82
5409 6831 1.826487 GCCCAAGGTTCAACCGTGT 60.826 57.895 19.69 0.00 44.65 4.49
5410 6832 1.826054 TGCCCAAGGTTCAACCGTG 60.826 57.895 15.13 15.13 45.52 4.94
5411 6833 1.826487 GTGCCCAAGGTTCAACCGT 60.826 57.895 0.00 0.00 44.90 4.83
5497 6919 3.937062 CCCTGTTAATCGCGCGGC 61.937 66.667 31.69 15.17 0.00 6.53
5498 6920 1.641123 AAACCCTGTTAATCGCGCGG 61.641 55.000 31.69 12.86 0.00 6.46
5499 6921 1.000884 TAAACCCTGTTAATCGCGCG 58.999 50.000 26.76 26.76 0.00 6.86
5547 6973 1.133976 ACTCATGGATAAGCTGGCACC 60.134 52.381 0.00 0.00 0.00 5.01
5574 7000 3.400007 GCCGCTGCTTGCTACTAC 58.600 61.111 0.00 0.00 40.11 2.73
5591 7017 7.531280 AATTCGAGAATAAGATGTGTGTCAG 57.469 36.000 0.00 0.00 0.00 3.51
5616 7042 9.174166 GCTAAATAAAATGGTCCTTCAACTCTA 57.826 33.333 0.00 0.00 0.00 2.43
5664 7114 2.476320 GCTGAGCGGGAAGATTGCC 61.476 63.158 0.00 0.00 35.00 4.52
5676 7126 2.124778 GCCAAGGAGGAGCTGAGC 60.125 66.667 0.00 0.00 41.22 4.26
5677 7127 1.221293 CTGCCAAGGAGGAGCTGAG 59.779 63.158 0.00 0.00 41.22 3.35
5715 7165 2.751806 GCTCATGAAGGAAGGAAAGGTG 59.248 50.000 0.00 0.00 0.00 4.00
5733 7183 0.370273 CTATGCCGACGTTTGTGCTC 59.630 55.000 0.00 0.00 0.00 4.26
5751 7201 1.346068 GAGGAGTTCAGTGTTGAGGCT 59.654 52.381 0.00 0.00 34.15 4.58
5757 7207 0.468226 TTGCCGAGGAGTTCAGTGTT 59.532 50.000 0.00 0.00 0.00 3.32
5815 7265 7.272978 ACGGTGCAAATTCTGAGTTACTATAT 58.727 34.615 0.00 0.00 0.00 0.86
5816 7266 6.636705 ACGGTGCAAATTCTGAGTTACTATA 58.363 36.000 0.00 0.00 0.00 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.