Multiple sequence alignment - TraesCS1B01G337100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G337100 chr1B 100.000 2900 0 0 1 2900 564160345 564163244 0.000000e+00 5356.0
1 TraesCS1B01G337100 chr1A 92.293 2569 117 37 399 2899 514549063 514551618 0.000000e+00 3572.0
2 TraesCS1B01G337100 chr1A 89.935 308 21 2 1 308 514545991 514546288 3.500000e-104 388.0
3 TraesCS1B01G337100 chr1A 78.361 610 87 26 1292 1891 566590688 566590114 1.280000e-93 353.0
4 TraesCS1B01G337100 chr1A 92.208 77 5 1 310 385 514548918 514548994 1.100000e-19 108.0
5 TraesCS1B01G337100 chr1D 89.356 1879 82 45 78 1896 417571847 417573667 0.000000e+00 2254.0
6 TraesCS1B01G337100 chr1D 94.467 976 25 8 1939 2899 417573674 417574635 0.000000e+00 1476.0
7 TraesCS1B01G337100 chrUn 97.093 344 9 1 1914 2256 240128385 240128728 1.940000e-161 579.0
8 TraesCS1B01G337100 chrUn 97.353 340 9 0 1914 2253 435744587 435744926 1.940000e-161 579.0
9 TraesCS1B01G337100 chr2B 97.093 344 9 1 1914 2256 77876761 77877104 1.940000e-161 579.0
10 TraesCS1B01G337100 chr2B 90.588 85 6 2 1665 1747 331027359 331027275 8.490000e-21 111.0
11 TraesCS1B01G337100 chr6B 96.512 344 11 1 1914 2256 418246341 418246684 4.190000e-158 568.0
12 TraesCS1B01G337100 chr4B 96.512 344 11 1 1914 2256 517726656 517726313 4.190000e-158 568.0
13 TraesCS1B01G337100 chr4B 94.000 50 3 0 394 443 45493371 45493322 3.100000e-10 76.8
14 TraesCS1B01G337100 chr3B 96.512 344 11 1 1914 2256 170507614 170507271 4.190000e-158 568.0
15 TraesCS1B01G337100 chr5B 96.221 344 12 1 1914 2256 140516957 140517300 1.950000e-156 562.0
16 TraesCS1B01G337100 chr5A 96.221 344 12 1 1914 2256 88285998 88286341 1.950000e-156 562.0
17 TraesCS1B01G337100 chr5A 87.255 102 13 0 1641 1742 66049193 66049294 1.830000e-22 117.0
18 TraesCS1B01G337100 chr5A 94.340 53 3 0 391 443 300120130 300120182 6.660000e-12 82.4
19 TraesCS1B01G337100 chr5A 92.982 57 3 1 384 440 435699416 435699471 6.660000e-12 82.4
20 TraesCS1B01G337100 chr7D 91.139 79 7 0 1664 1742 326034627 326034705 1.100000e-19 108.0
21 TraesCS1B01G337100 chr2D 96.000 50 2 0 391 440 629605519 629605568 6.660000e-12 82.4
22 TraesCS1B01G337100 chr2D 95.455 44 2 0 388 431 627976151 627976194 1.440000e-08 71.3
23 TraesCS1B01G337100 chr7B 94.340 53 2 1 394 446 475308018 475307967 2.400000e-11 80.5
24 TraesCS1B01G337100 chr7B 88.060 67 5 3 386 450 744205308 744205243 3.100000e-10 76.8
25 TraesCS1B01G337100 chr7B 88.889 63 5 2 370 431 748341885 748341824 3.100000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G337100 chr1B 564160345 564163244 2899 False 5356 5356 100.000000 1 2900 1 chr1B.!!$F1 2899
1 TraesCS1B01G337100 chr1A 514545991 514551618 5627 False 1356 3572 91.478667 1 2899 3 chr1A.!!$F1 2898
2 TraesCS1B01G337100 chr1A 566590114 566590688 574 True 353 353 78.361000 1292 1891 1 chr1A.!!$R1 599
3 TraesCS1B01G337100 chr1D 417571847 417574635 2788 False 1865 2254 91.911500 78 2899 2 chr1D.!!$F1 2821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.175760 AGTGCGCCACGATCTGTAAT 59.824 50.0 4.18 0.0 39.64 1.89 F
775 3483 0.321671 CTCCGCCTTCACTTTCTCCA 59.678 55.0 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1055 3796 0.322816 GGTGAAGAGGCCAAGCATGA 60.323 55.000 5.01 0.0 0.00 3.07 R
2742 5535 1.005450 GGGGCTGTTCCTATTTCCACA 59.995 52.381 0.00 0.0 34.39 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.615264 CACAAGATGATTGTGGAGGATAAG 57.385 41.667 11.90 0.00 44.33 1.73
45 46 3.931907 TGATTGTGGAGGATAAGGGTG 57.068 47.619 0.00 0.00 0.00 4.61
68 69 0.457853 GAGTGCGCCACGATCTGTAA 60.458 55.000 4.18 0.00 39.64 2.41
69 70 0.175760 AGTGCGCCACGATCTGTAAT 59.824 50.000 4.18 0.00 39.64 1.89
70 71 1.006832 GTGCGCCACGATCTGTAATT 58.993 50.000 4.18 0.00 0.00 1.40
71 72 1.396996 GTGCGCCACGATCTGTAATTT 59.603 47.619 4.18 0.00 0.00 1.82
72 73 2.080693 TGCGCCACGATCTGTAATTTT 58.919 42.857 4.18 0.00 0.00 1.82
73 74 3.062909 GTGCGCCACGATCTGTAATTTTA 59.937 43.478 4.18 0.00 0.00 1.52
74 75 3.062909 TGCGCCACGATCTGTAATTTTAC 59.937 43.478 4.18 0.00 0.00 2.01
75 76 3.308866 GCGCCACGATCTGTAATTTTACT 59.691 43.478 0.00 0.00 34.77 2.24
76 77 4.201783 GCGCCACGATCTGTAATTTTACTT 60.202 41.667 0.00 0.00 34.77 2.24
156 157 4.025040 AGGACATTGTTGAGCAGAATCA 57.975 40.909 0.00 0.00 0.00 2.57
167 168 1.302366 GCAGAATCATGCGTCATCCA 58.698 50.000 0.00 0.00 36.28 3.41
212 213 0.969149 AACAGACTCGTCATGGAGCA 59.031 50.000 0.00 0.00 37.57 4.26
244 245 6.009589 AGGATGATGTGGTTCAACATTTGTA 58.990 36.000 0.00 0.00 40.87 2.41
257 258 5.813157 TCAACATTTGTAGGCGATTCGATTA 59.187 36.000 10.88 0.00 0.00 1.75
285 286 5.824243 AGTAGAATTCAACAAACTCGACG 57.176 39.130 8.44 0.00 0.00 5.12
287 288 6.441274 AGTAGAATTCAACAAACTCGACGTA 58.559 36.000 8.44 0.00 0.00 3.57
305 306 4.030913 ACGTAGAATGGAATGGAAGAGGA 58.969 43.478 0.00 0.00 0.00 3.71
306 307 4.469945 ACGTAGAATGGAATGGAAGAGGAA 59.530 41.667 0.00 0.00 0.00 3.36
307 308 5.053145 CGTAGAATGGAATGGAAGAGGAAG 58.947 45.833 0.00 0.00 0.00 3.46
308 309 4.516652 AGAATGGAATGGAAGAGGAAGG 57.483 45.455 0.00 0.00 0.00 3.46
348 2982 2.959707 TGTGTTTGGCGGTAAAAAGGAT 59.040 40.909 0.00 0.00 0.00 3.24
349 2983 3.385111 TGTGTTTGGCGGTAAAAAGGATT 59.615 39.130 0.00 0.00 0.00 3.01
356 2990 5.071370 TGGCGGTAAAAAGGATTCAAGTTA 58.929 37.500 0.00 0.00 0.00 2.24
385 3019 2.682858 GCCGGCCTCTTGGTAAATACTT 60.683 50.000 18.11 0.00 35.27 2.24
386 3020 3.432608 GCCGGCCTCTTGGTAAATACTTA 60.433 47.826 18.11 0.00 35.27 2.24
388 3022 5.511888 GCCGGCCTCTTGGTAAATACTTATA 60.512 44.000 18.11 0.00 35.27 0.98
389 3023 6.708285 CCGGCCTCTTGGTAAATACTTATAT 58.292 40.000 0.00 0.00 35.27 0.86
390 3024 7.166167 CCGGCCTCTTGGTAAATACTTATATT 58.834 38.462 0.00 0.00 35.27 1.28
391 3025 8.316214 CCGGCCTCTTGGTAAATACTTATATTA 58.684 37.037 0.00 0.00 35.27 0.98
392 3026 9.715121 CGGCCTCTTGGTAAATACTTATATTAA 57.285 33.333 0.00 0.00 35.27 1.40
417 3105 9.950680 AATGTCAAAAACGCTCTTATATTATGG 57.049 29.630 0.00 0.00 0.00 2.74
418 3106 7.925993 TGTCAAAAACGCTCTTATATTATGGG 58.074 34.615 0.00 0.00 0.00 4.00
425 3113 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
462 3152 7.222000 AGACAGTAGTAGGAAAAAGAGACTG 57.778 40.000 0.00 0.00 39.14 3.51
547 3248 5.999483 CATGCATGCATAGTACTACTACG 57.001 43.478 31.73 11.91 32.84 3.51
650 3352 2.928313 ATTGCGTTGCGTTGCGTTGT 62.928 50.000 0.00 0.00 0.00 3.32
659 3361 1.623295 GTTGCGTTGTGTTTGCGTG 59.377 52.632 0.00 0.00 0.00 5.34
737 3445 2.946990 GTTTCCTTTCCGTGGAACAGAA 59.053 45.455 0.00 4.80 42.57 3.02
739 3447 1.487142 TCCTTTCCGTGGAACAGAACA 59.513 47.619 0.00 0.00 41.80 3.18
775 3483 0.321671 CTCCGCCTTCACTTTCTCCA 59.678 55.000 0.00 0.00 0.00 3.86
785 3493 6.294955 GCCTTCACTTTCTCCAATCTCATTTT 60.295 38.462 0.00 0.00 0.00 1.82
786 3494 7.311408 CCTTCACTTTCTCCAATCTCATTTTC 58.689 38.462 0.00 0.00 0.00 2.29
787 3495 7.040201 CCTTCACTTTCTCCAATCTCATTTTCA 60.040 37.037 0.00 0.00 0.00 2.69
788 3496 8.413309 TTCACTTTCTCCAATCTCATTTTCAT 57.587 30.769 0.00 0.00 0.00 2.57
789 3497 8.048534 TCACTTTCTCCAATCTCATTTTCATC 57.951 34.615 0.00 0.00 0.00 2.92
794 3502 8.818622 TTCTCCAATCTCATTTTCATCTCATT 57.181 30.769 0.00 0.00 0.00 2.57
800 3508 9.464714 CAATCTCATTTTCATCTCATTTCATCC 57.535 33.333 0.00 0.00 0.00 3.51
852 3560 1.293267 TTCCCCAATTTCGTCGTCGC 61.293 55.000 0.00 0.00 36.96 5.19
874 3582 4.626172 GCCGTCGTCTTCTTCTTCTTATTT 59.374 41.667 0.00 0.00 0.00 1.40
955 3663 9.249053 TCTTGTCATCAATCTACCTATCCTATC 57.751 37.037 0.00 0.00 32.82 2.08
994 3717 9.487790 CTTCTTCTTCTTCTTCTTAACACTGAT 57.512 33.333 0.00 0.00 0.00 2.90
1031 3754 1.742268 GATCTCCAACTCCAAGCAAGC 59.258 52.381 0.00 0.00 0.00 4.01
1048 3789 0.536006 AGCACAAGGACAAGGAGCAC 60.536 55.000 0.00 0.00 0.00 4.40
1055 3796 1.367840 GACAAGGAGCACTGGTCGT 59.632 57.895 2.19 0.00 40.22 4.34
1070 3811 0.674895 GTCGTCATGCTTGGCCTCTT 60.675 55.000 3.32 0.00 0.00 2.85
1104 3845 1.158484 CCATGTCGATGCTGCCTCTG 61.158 60.000 0.00 0.00 0.00 3.35
1159 3900 7.963532 ACAGTACATACATATTCTTCCCGATT 58.036 34.615 0.00 0.00 0.00 3.34
1179 3920 2.045524 TGATGCATCTTCTCCTCCTCC 58.954 52.381 26.32 0.00 0.00 4.30
1182 3923 1.290431 TGCATCTTCTCCTCCTCCTCT 59.710 52.381 0.00 0.00 0.00 3.69
1183 3924 1.963515 GCATCTTCTCCTCCTCCTCTC 59.036 57.143 0.00 0.00 0.00 3.20
1202 3949 5.078411 TCTCTCTCTTCTTGTTATGTGCC 57.922 43.478 0.00 0.00 0.00 5.01
1210 3957 0.109365 TTGTTATGTGCCGTGCATGC 60.109 50.000 11.82 11.82 41.91 4.06
1718 4476 2.045926 CCCCAACTCCAGCTTCCG 60.046 66.667 0.00 0.00 0.00 4.30
1906 4665 8.501904 TCCAGTCTAGTCTAGTCTAGTCTAGTA 58.498 40.741 26.77 17.32 41.87 1.82
1907 4666 9.135189 CCAGTCTAGTCTAGTCTAGTCTAGTAA 57.865 40.741 26.77 14.87 41.87 2.24
2055 4815 5.665381 TTTTCAAAACATTTGGGATTCGC 57.335 34.783 3.25 0.00 0.00 4.70
2096 4858 3.871485 TCCAAAATGCAAAGCACAAACT 58.129 36.364 0.00 0.00 43.04 2.66
2169 4942 7.105241 TGAGCAGTCCATATATATAGCACAG 57.895 40.000 0.00 0.00 0.00 3.66
2173 4946 7.615757 AGCAGTCCATATATATAGCACAGTACA 59.384 37.037 0.00 0.00 0.00 2.90
2345 5137 0.179078 TGCAAAACAAAGGGCTGCTG 60.179 50.000 0.00 0.00 34.10 4.41
2475 5267 1.742831 GCATCAAACACCGCCTTGATA 59.257 47.619 0.00 0.00 39.66 2.15
2486 5278 2.016318 CGCCTTGATATTCTGCACCAA 58.984 47.619 0.00 0.00 0.00 3.67
2512 5304 3.888930 ACCAAATCACTAACCCAACACTG 59.111 43.478 0.00 0.00 0.00 3.66
2514 5306 3.508845 AATCACTAACCCAACACTGCT 57.491 42.857 0.00 0.00 0.00 4.24
2524 5316 2.290323 CCCAACACTGCTACTAGCCTTT 60.290 50.000 5.58 0.00 41.51 3.11
2536 5328 5.581479 GCTACTAGCCTTTTTCTTCACTACC 59.419 44.000 0.00 0.00 34.48 3.18
2553 5345 2.414994 ACCAGGAGATGCACTCATTG 57.585 50.000 15.22 12.53 46.54 2.82
2631 5423 2.166459 TCAGCTCTTCACCCTACAATCG 59.834 50.000 0.00 0.00 0.00 3.34
2699 5491 7.010183 ACGGAACATACGCATATGCTATTTATC 59.990 37.037 24.56 15.18 41.83 1.75
2708 5500 7.332926 ACGCATATGCTATTTATCTTCTCAAGG 59.667 37.037 24.56 5.67 39.32 3.61
2742 5535 0.323908 AGCTTCCGAGTACCTGAGCT 60.324 55.000 0.00 0.00 0.00 4.09
2899 5692 4.436718 CGAAACATGCGGAATAATGTCACA 60.437 41.667 0.00 0.00 35.99 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.796231 ATCGTGGCGCACTCCGTC 62.796 66.667 10.83 0.00 43.18 4.79
100 101 4.186077 TGGTTTTCCCAAATACCAGACA 57.814 40.909 0.00 0.00 41.50 3.41
106 107 5.016831 AGGATCACTGGTTTTCCCAAATAC 58.983 41.667 0.00 0.00 44.65 1.89
131 132 1.610038 CTGCTCAACAATGTCCTTGCA 59.390 47.619 0.00 0.00 38.50 4.08
156 157 4.520492 GGATAATTTCCTTGGATGACGCAT 59.480 41.667 0.00 0.00 41.78 4.73
161 162 6.383436 TGCATTTGGATAATTTCCTTGGATGA 59.617 34.615 7.78 0.00 45.68 2.92
163 164 6.811634 TGCATTTGGATAATTTCCTTGGAT 57.188 33.333 7.78 0.00 45.68 3.41
167 168 5.991861 TGCATGCATTTGGATAATTTCCTT 58.008 33.333 18.46 0.00 45.68 3.36
212 213 4.019051 TGAACCACATCATCCTCATGAGTT 60.019 41.667 21.11 5.81 42.53 3.01
244 245 7.450124 TCTACTTATTCTAATCGAATCGCCT 57.550 36.000 0.00 0.00 41.36 5.52
257 258 9.706691 TCGAGTTTGTTGAATTCTACTTATTCT 57.293 29.630 18.63 10.76 34.00 2.40
285 286 5.131142 TCCTTCCTCTTCCATTCCATTCTAC 59.869 44.000 0.00 0.00 0.00 2.59
287 288 4.114597 TCCTTCCTCTTCCATTCCATTCT 58.885 43.478 0.00 0.00 0.00 2.40
305 306 3.821033 ACGCATAGCTTGTTTTCTTCCTT 59.179 39.130 0.00 0.00 0.00 3.36
306 307 3.189287 CACGCATAGCTTGTTTTCTTCCT 59.811 43.478 0.00 0.00 0.00 3.36
307 308 3.058224 ACACGCATAGCTTGTTTTCTTCC 60.058 43.478 0.00 0.00 37.78 3.46
308 309 3.908382 CACACGCATAGCTTGTTTTCTTC 59.092 43.478 0.00 0.00 38.94 2.87
348 2982 1.543802 CCGGCCATGCTTTAACTTGAA 59.456 47.619 2.24 0.00 0.00 2.69
349 2983 1.173043 CCGGCCATGCTTTAACTTGA 58.827 50.000 2.24 0.00 0.00 3.02
356 2990 3.590466 AAGAGGCCGGCCATGCTTT 62.590 57.895 45.13 25.93 38.92 3.51
391 3025 9.950680 CCATAATATAAGAGCGTTTTTGACATT 57.049 29.630 0.00 0.00 0.00 2.71
392 3026 8.567948 CCCATAATATAAGAGCGTTTTTGACAT 58.432 33.333 0.00 0.00 0.00 3.06
394 3028 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
396 3030 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
402 3090 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
415 3103 1.572415 ACTAATACTCCCTCCGTCCCA 59.428 52.381 0.00 0.00 0.00 4.37
416 3104 1.962100 CACTAATACTCCCTCCGTCCC 59.038 57.143 0.00 0.00 0.00 4.46
417 3105 2.664015 ACACTAATACTCCCTCCGTCC 58.336 52.381 0.00 0.00 0.00 4.79
418 3106 4.514816 GTCTACACTAATACTCCCTCCGTC 59.485 50.000 0.00 0.00 0.00 4.79
425 3113 8.428063 TCCTACTACTGTCTACACTAATACTCC 58.572 40.741 0.00 0.00 0.00 3.85
462 3152 3.627577 ACACAACACCTTCTGTCATTCAC 59.372 43.478 0.00 0.00 30.29 3.18
505 3195 2.957680 TGCTGCAGTGAAAATGAAAGGA 59.042 40.909 16.64 0.00 30.28 3.36
506 3196 3.374220 TGCTGCAGTGAAAATGAAAGG 57.626 42.857 16.64 0.00 30.28 3.11
533 3234 7.381948 CACTGTCTCTACCGTAGTAGTACTATG 59.618 44.444 18.94 18.94 45.36 2.23
534 3235 7.432869 CACTGTCTCTACCGTAGTAGTACTAT 58.567 42.308 13.09 0.62 45.36 2.12
535 3236 6.183360 CCACTGTCTCTACCGTAGTAGTACTA 60.183 46.154 5.90 5.90 45.36 1.82
536 3237 5.395103 CCACTGTCTCTACCGTAGTAGTACT 60.395 48.000 8.14 8.14 45.36 2.73
537 3238 4.808364 CCACTGTCTCTACCGTAGTAGTAC 59.192 50.000 5.46 0.00 45.36 2.73
538 3239 4.467795 ACCACTGTCTCTACCGTAGTAGTA 59.532 45.833 5.46 0.00 45.36 1.82
539 3240 3.262915 ACCACTGTCTCTACCGTAGTAGT 59.737 47.826 5.46 4.23 45.36 2.73
540 3241 3.871485 ACCACTGTCTCTACCGTAGTAG 58.129 50.000 5.46 2.82 46.34 2.57
547 3248 3.018149 CTCCACTACCACTGTCTCTACC 58.982 54.545 0.00 0.00 0.00 3.18
650 3352 1.728068 ACACAGTACACACGCAAACA 58.272 45.000 0.00 0.00 0.00 2.83
737 3445 2.929830 CAGCTGCTCTGCTCTTTGT 58.070 52.632 0.00 0.00 41.98 2.83
775 3483 8.639761 GGGATGAAATGAGATGAAAATGAGATT 58.360 33.333 0.00 0.00 0.00 2.40
785 3493 4.722220 GTGGATGGGATGAAATGAGATGA 58.278 43.478 0.00 0.00 0.00 2.92
786 3494 3.501062 CGTGGATGGGATGAAATGAGATG 59.499 47.826 0.00 0.00 0.00 2.90
787 3495 3.748083 CGTGGATGGGATGAAATGAGAT 58.252 45.455 0.00 0.00 0.00 2.75
788 3496 2.746142 GCGTGGATGGGATGAAATGAGA 60.746 50.000 0.00 0.00 0.00 3.27
789 3497 1.605710 GCGTGGATGGGATGAAATGAG 59.394 52.381 0.00 0.00 0.00 2.90
794 3502 0.679640 GTTGGCGTGGATGGGATGAA 60.680 55.000 0.00 0.00 0.00 2.57
800 3508 3.124921 GTCCGTTGGCGTGGATGG 61.125 66.667 0.00 0.00 36.48 3.51
852 3560 6.094061 AGAAATAAGAAGAAGAAGACGACGG 58.906 40.000 0.00 0.00 0.00 4.79
874 3582 1.684983 ACGGACACGGAAAGAAGAAGA 59.315 47.619 0.00 0.00 46.48 2.87
926 3634 8.207545 AGGATAGGTAGATTGATGACAAGAAAC 58.792 37.037 0.00 0.00 39.46 2.78
994 3717 2.170166 GATCCCAAGCCACATTGTCAA 58.830 47.619 0.00 0.00 0.00 3.18
1031 3754 1.233019 CAGTGCTCCTTGTCCTTGTG 58.767 55.000 0.00 0.00 0.00 3.33
1048 3789 2.401766 GGCCAAGCATGACGACCAG 61.402 63.158 0.00 0.00 0.00 4.00
1055 3796 0.322816 GGTGAAGAGGCCAAGCATGA 60.323 55.000 5.01 0.00 0.00 3.07
1070 3811 5.022787 TCGACATGGATATGGATATGGTGA 58.977 41.667 0.00 0.00 38.66 4.02
1159 3900 2.045524 GGAGGAGGAGAAGATGCATCA 58.954 52.381 27.81 0.00 0.00 3.07
1179 3920 5.108517 GGCACATAACAAGAAGAGAGAGAG 58.891 45.833 0.00 0.00 0.00 3.20
1182 3923 3.258372 ACGGCACATAACAAGAAGAGAGA 59.742 43.478 0.00 0.00 0.00 3.10
1183 3924 3.369147 CACGGCACATAACAAGAAGAGAG 59.631 47.826 0.00 0.00 0.00 3.20
1210 3957 4.978083 AGAATAAATGAGCCAAGCACAG 57.022 40.909 0.00 0.00 32.12 3.66
1286 4036 3.039134 CGTTGGCTGGGTTTGGTC 58.961 61.111 0.00 0.00 0.00 4.02
1287 4037 3.223589 GCGTTGGCTGGGTTTGGT 61.224 61.111 0.00 0.00 35.83 3.67
1906 4665 7.936847 TCAGTTGGTACAGACAGTTTATTCATT 59.063 33.333 0.00 0.00 42.39 2.57
1907 4666 7.450074 TCAGTTGGTACAGACAGTTTATTCAT 58.550 34.615 0.00 0.00 42.39 2.57
1908 4667 6.822442 TCAGTTGGTACAGACAGTTTATTCA 58.178 36.000 0.00 0.00 42.39 2.57
1910 4669 8.567948 CAATTCAGTTGGTACAGACAGTTTATT 58.432 33.333 0.00 0.00 42.39 1.40
1911 4670 7.719633 ACAATTCAGTTGGTACAGACAGTTTAT 59.280 33.333 0.00 0.00 42.39 1.40
1914 4673 5.437060 ACAATTCAGTTGGTACAGACAGTT 58.563 37.500 0.00 0.00 42.39 3.16
1915 4674 5.036117 ACAATTCAGTTGGTACAGACAGT 57.964 39.130 0.00 0.00 42.39 3.55
2169 4942 5.182001 AGCTCATGATGAACTTGGTTTGTAC 59.818 40.000 0.00 0.00 0.00 2.90
2173 4946 3.057033 GCAGCTCATGATGAACTTGGTTT 60.057 43.478 0.00 0.00 0.00 3.27
2175 4948 2.089980 GCAGCTCATGATGAACTTGGT 58.910 47.619 0.00 0.00 0.00 3.67
2319 5111 2.418609 GCCCTTTGTTTTGCAGTGTCTT 60.419 45.455 0.00 0.00 0.00 3.01
2345 5137 2.977772 AATGGTAGAGTGAGCTGAGC 57.022 50.000 0.00 0.00 0.00 4.26
2486 5278 3.237268 TGGGTTAGTGATTTGGTTGCT 57.763 42.857 0.00 0.00 0.00 3.91
2512 5304 5.581479 GGTAGTGAAGAAAAAGGCTAGTAGC 59.419 44.000 14.09 14.09 41.46 3.58
2514 5306 6.295688 CCTGGTAGTGAAGAAAAAGGCTAGTA 60.296 42.308 0.00 0.00 0.00 1.82
2524 5316 3.582647 TGCATCTCCTGGTAGTGAAGAAA 59.417 43.478 0.00 0.00 0.00 2.52
2536 5328 3.118482 AGGTACAATGAGTGCATCTCCTG 60.118 47.826 11.99 11.38 42.12 3.86
2553 5345 2.618709 AGCTCAAAAACACAGCAGGTAC 59.381 45.455 0.00 0.00 35.46 3.34
2631 5423 4.099266 AGTGATCTCATCTCTGTGGCTAAC 59.901 45.833 0.00 0.00 32.37 2.34
2742 5535 1.005450 GGGGCTGTTCCTATTTCCACA 59.995 52.381 0.00 0.00 34.39 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.