Multiple sequence alignment - TraesCS1B01G335900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G335900 chr1B 100.000 3431 0 0 1 3431 562565880 562562450 0.000000e+00 6336.0
1 TraesCS1B01G335900 chr1B 98.529 1360 20 0 1071 2430 562545782 562544423 0.000000e+00 2401.0
2 TraesCS1B01G335900 chr1B 82.963 675 98 14 2435 3101 557464776 557465441 8.200000e-166 593.0
3 TraesCS1B01G335900 chr1B 84.412 417 43 14 3009 3416 152515185 152514782 1.150000e-104 390.0
4 TraesCS1B01G335900 chr1B 86.432 199 23 2 2808 3006 152515188 152515382 7.460000e-52 215.0
5 TraesCS1B01G335900 chr6B 98.312 1007 10 3 2430 3431 652980768 652981772 0.000000e+00 1759.0
6 TraesCS1B01G335900 chr6B 83.512 467 59 13 2976 3429 69447227 69447688 1.470000e-113 420.0
7 TraesCS1B01G335900 chr6B 82.558 344 51 7 5 347 714381215 714380880 9.310000e-76 294.0
8 TraesCS1B01G335900 chr6B 85.714 252 29 5 2437 2682 518381650 518381900 3.400000e-65 259.0
9 TraesCS1B01G335900 chr6B 89.100 211 16 5 2879 3086 518381896 518382102 4.390000e-64 255.0
10 TraesCS1B01G335900 chr6B 86.726 226 25 2 2437 2657 687128285 687128510 2.640000e-61 246.0
11 TraesCS1B01G335900 chr6B 90.977 133 12 0 452 584 714380845 714380713 2.720000e-41 180.0
12 TraesCS1B01G335900 chr1D 93.728 845 53 0 1584 2428 416228419 416227575 0.000000e+00 1267.0
13 TraesCS1B01G335900 chr1D 95.763 590 25 0 1 590 146147677 146148266 0.000000e+00 952.0
14 TraesCS1B01G335900 chr1D 93.258 623 41 1 969 1590 416266928 416266306 0.000000e+00 917.0
15 TraesCS1B01G335900 chr1D 84.155 568 65 20 2879 3430 487352604 487352046 8.430000e-146 527.0
16 TraesCS1B01G335900 chr1D 98.113 53 1 0 589 641 416307172 416307120 3.650000e-15 93.5
17 TraesCS1B01G335900 chr1D 91.489 47 4 0 543 589 15599235 15599281 7.950000e-07 65.8
18 TraesCS1B01G335900 chr1D 92.500 40 2 1 545 584 476771608 476771570 4.780000e-04 56.5
19 TraesCS1B01G335900 chrUn 81.729 1423 220 19 1028 2428 49322806 49324210 0.000000e+00 1151.0
20 TraesCS1B01G335900 chrUn 84.821 448 48 8 988 1416 49378953 49379399 1.890000e-117 433.0
21 TraesCS1B01G335900 chrUn 88.688 221 16 1 2435 2655 85637896 85637685 9.440000e-66 261.0
22 TraesCS1B01G335900 chr1A 93.271 743 50 0 1666 2408 513685737 513684995 0.000000e+00 1096.0
23 TraesCS1B01G335900 chr1A 92.997 714 41 5 975 1679 513686467 513685754 0.000000e+00 1033.0
24 TraesCS1B01G335900 chr1A 88.889 315 19 9 657 962 513705255 513704948 1.160000e-99 374.0
25 TraesCS1B01G335900 chr1A 93.689 206 11 1 1136 1339 513707468 513707263 1.200000e-79 307.0
26 TraesCS1B01G335900 chr4D 93.924 609 32 3 1 608 95286566 95285962 0.000000e+00 915.0
27 TraesCS1B01G335900 chr2D 93.401 591 31 3 1 591 305951233 305950651 0.000000e+00 869.0
28 TraesCS1B01G335900 chr2D 83.659 563 70 16 2869 3416 131644406 131644961 8.490000e-141 510.0
29 TraesCS1B01G335900 chr7D 81.366 1025 161 14 1413 2428 47649257 47650260 0.000000e+00 808.0
30 TraesCS1B01G335900 chr7D 85.371 458 47 7 978 1416 47648724 47649180 1.120000e-124 457.0
31 TraesCS1B01G335900 chr7D 80.531 226 34 6 362 584 566217094 566217312 7.620000e-37 165.0
32 TraesCS1B01G335900 chr7B 96.256 454 17 0 1 454 744659066 744659519 0.000000e+00 745.0
33 TraesCS1B01G335900 chr4A 80.346 926 156 11 1413 2331 662625926 662625020 0.000000e+00 678.0
34 TraesCS1B01G335900 chr4A 85.523 449 45 9 987 1416 662626453 662626006 5.220000e-123 451.0
35 TraesCS1B01G335900 chr5A 80.129 775 122 23 1012 1761 635337754 635336987 1.800000e-152 549.0
36 TraesCS1B01G335900 chr5A 78.452 775 142 14 1007 1761 635381435 635380666 1.850000e-132 483.0
37 TraesCS1B01G335900 chr5A 75.673 929 181 31 1490 2400 635291484 635290583 4.090000e-114 422.0
38 TraesCS1B01G335900 chr6D 84.656 567 63 20 2879 3430 16855948 16855391 8.370000e-151 544.0
39 TraesCS1B01G335900 chr6D 86.111 252 21 6 2437 2682 16856187 16855944 3.400000e-65 259.0
40 TraesCS1B01G335900 chr6D 100.000 36 0 0 3258 3293 16855440 16855405 2.210000e-07 67.6
41 TraesCS1B01G335900 chr5B 78.941 774 139 13 1007 1761 638304567 638303799 3.950000e-139 505.0
42 TraesCS1B01G335900 chr5D 78.479 776 139 23 1007 1761 507769085 507768317 1.850000e-132 483.0
43 TraesCS1B01G335900 chr5D 79.132 599 106 13 1819 2400 507617673 507617077 2.480000e-106 396.0
44 TraesCS1B01G335900 chr5D 78.559 583 100 18 1838 2400 507572358 507571781 9.050000e-96 361.0
45 TraesCS1B01G335900 chr5D 81.598 413 55 11 1022 1417 507618702 507618294 4.270000e-84 322.0
46 TraesCS1B01G335900 chr7A 85.590 458 46 8 978 1416 50182606 50182150 2.410000e-126 462.0
47 TraesCS1B01G335900 chr7A 84.530 181 28 0 1 181 3579494 3579674 2.720000e-41 180.0
48 TraesCS1B01G335900 chr3D 86.567 402 50 4 1 400 19283142 19282743 1.130000e-119 440.0
49 TraesCS1B01G335900 chr3D 84.270 89 7 6 2435 2519 82558084 82558169 2.840000e-11 80.5
50 TraesCS1B01G335900 chr3A 83.721 473 51 17 2976 3431 565532357 565531894 1.140000e-114 424.0
51 TraesCS1B01G335900 chr3A 84.951 206 20 8 2437 2637 565532691 565532492 7.510000e-47 198.0
52 TraesCS1B01G335900 chr6A 81.333 150 23 4 3247 3393 3620537 3620684 2.160000e-22 117.0
53 TraesCS1B01G335900 chr3B 97.619 42 0 1 543 584 544999223 544999263 1.710000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G335900 chr1B 562562450 562565880 3430 True 6336.0 6336 100.000000 1 3431 1 chr1B.!!$R3 3430
1 TraesCS1B01G335900 chr1B 562544423 562545782 1359 True 2401.0 2401 98.529000 1071 2430 1 chr1B.!!$R2 1359
2 TraesCS1B01G335900 chr1B 557464776 557465441 665 False 593.0 593 82.963000 2435 3101 1 chr1B.!!$F2 666
3 TraesCS1B01G335900 chr6B 652980768 652981772 1004 False 1759.0 1759 98.312000 2430 3431 1 chr6B.!!$F2 1001
4 TraesCS1B01G335900 chr6B 714380713 714381215 502 True 237.0 294 86.767500 5 584 2 chr6B.!!$R1 579
5 TraesCS1B01G335900 chr1D 416227575 416228419 844 True 1267.0 1267 93.728000 1584 2428 1 chr1D.!!$R1 844
6 TraesCS1B01G335900 chr1D 146147677 146148266 589 False 952.0 952 95.763000 1 590 1 chr1D.!!$F2 589
7 TraesCS1B01G335900 chr1D 416266306 416266928 622 True 917.0 917 93.258000 969 1590 1 chr1D.!!$R2 621
8 TraesCS1B01G335900 chr1D 487352046 487352604 558 True 527.0 527 84.155000 2879 3430 1 chr1D.!!$R5 551
9 TraesCS1B01G335900 chrUn 49322806 49324210 1404 False 1151.0 1151 81.729000 1028 2428 1 chrUn.!!$F1 1400
10 TraesCS1B01G335900 chr1A 513684995 513686467 1472 True 1064.5 1096 93.134000 975 2408 2 chr1A.!!$R1 1433
11 TraesCS1B01G335900 chr1A 513704948 513707468 2520 True 340.5 374 91.289000 657 1339 2 chr1A.!!$R2 682
12 TraesCS1B01G335900 chr4D 95285962 95286566 604 True 915.0 915 93.924000 1 608 1 chr4D.!!$R1 607
13 TraesCS1B01G335900 chr2D 305950651 305951233 582 True 869.0 869 93.401000 1 591 1 chr2D.!!$R1 590
14 TraesCS1B01G335900 chr2D 131644406 131644961 555 False 510.0 510 83.659000 2869 3416 1 chr2D.!!$F1 547
15 TraesCS1B01G335900 chr7D 47648724 47650260 1536 False 632.5 808 83.368500 978 2428 2 chr7D.!!$F2 1450
16 TraesCS1B01G335900 chr4A 662625020 662626453 1433 True 564.5 678 82.934500 987 2331 2 chr4A.!!$R1 1344
17 TraesCS1B01G335900 chr5A 635336987 635337754 767 True 549.0 549 80.129000 1012 1761 1 chr5A.!!$R2 749
18 TraesCS1B01G335900 chr5A 635380666 635381435 769 True 483.0 483 78.452000 1007 1761 1 chr5A.!!$R3 754
19 TraesCS1B01G335900 chr5A 635290583 635291484 901 True 422.0 422 75.673000 1490 2400 1 chr5A.!!$R1 910
20 TraesCS1B01G335900 chr6D 16855391 16856187 796 True 290.2 544 90.255667 2437 3430 3 chr6D.!!$R1 993
21 TraesCS1B01G335900 chr5B 638303799 638304567 768 True 505.0 505 78.941000 1007 1761 1 chr5B.!!$R1 754
22 TraesCS1B01G335900 chr5D 507768317 507769085 768 True 483.0 483 78.479000 1007 1761 1 chr5D.!!$R2 754
23 TraesCS1B01G335900 chr5D 507571781 507572358 577 True 361.0 361 78.559000 1838 2400 1 chr5D.!!$R1 562
24 TraesCS1B01G335900 chr5D 507617077 507618702 1625 True 359.0 396 80.365000 1022 2400 2 chr5D.!!$R3 1378
25 TraesCS1B01G335900 chr3A 565531894 565532691 797 True 311.0 424 84.336000 2437 3431 2 chr3A.!!$R1 994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
878 880 0.035317 AACGAGAGCCACATGCAGAA 59.965 50.0 0.0 0.0 44.83 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2872 4550 1.581447 GGAAAAGCTTGGACTGGCG 59.419 57.895 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 4.812476 CGGACGGCGAGGAATGCA 62.812 66.667 16.62 0.00 0.00 3.96
83 84 0.250038 GCGAGGAATGCAGCATAGGA 60.250 55.000 8.75 0.00 0.00 2.94
105 106 1.893919 GCTCTGGCTTCTTCTCCGGT 61.894 60.000 0.00 0.00 35.22 5.28
402 403 0.179056 CAGGAGTTGGTGGTTGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
485 487 9.620660 GATGTTTGTTGTCCGTTATTTTCTAAT 57.379 29.630 0.00 0.00 0.00 1.73
541 543 1.159285 ATCGTTCGGTCGTGTACTCA 58.841 50.000 0.00 0.00 0.00 3.41
584 586 1.887854 GCGGGGTGTAAAGCCTTTTTA 59.112 47.619 0.09 0.00 0.00 1.52
608 610 0.995024 ACTCAACCAATCCCTGAGGG 59.005 55.000 12.53 12.53 46.11 4.30
609 611 0.995024 CTCAACCAATCCCTGAGGGT 59.005 55.000 18.83 1.65 44.74 4.34
610 612 0.698238 TCAACCAATCCCTGAGGGTG 59.302 55.000 18.83 9.44 44.74 4.61
611 613 0.405585 CAACCAATCCCTGAGGGTGT 59.594 55.000 18.83 8.11 44.74 4.16
612 614 1.158007 AACCAATCCCTGAGGGTGTT 58.842 50.000 18.83 13.56 44.74 3.32
613 615 0.405585 ACCAATCCCTGAGGGTGTTG 59.594 55.000 18.83 21.30 44.74 3.33
614 616 0.323725 CCAATCCCTGAGGGTGTTGG 60.324 60.000 29.27 29.27 45.31 3.77
615 617 0.967380 CAATCCCTGAGGGTGTTGGC 60.967 60.000 18.83 0.00 44.74 4.52
616 618 2.484287 AATCCCTGAGGGTGTTGGCG 62.484 60.000 18.83 0.00 44.74 5.69
617 619 3.636231 CCCTGAGGGTGTTGGCGA 61.636 66.667 10.09 0.00 38.25 5.54
618 620 2.671070 CCTGAGGGTGTTGGCGAT 59.329 61.111 0.00 0.00 0.00 4.58
619 621 1.746615 CCTGAGGGTGTTGGCGATG 60.747 63.158 0.00 0.00 0.00 3.84
620 622 1.296392 CTGAGGGTGTTGGCGATGA 59.704 57.895 0.00 0.00 0.00 2.92
621 623 0.321564 CTGAGGGTGTTGGCGATGAA 60.322 55.000 0.00 0.00 0.00 2.57
622 624 0.605319 TGAGGGTGTTGGCGATGAAC 60.605 55.000 0.00 0.00 0.00 3.18
623 625 0.605319 GAGGGTGTTGGCGATGAACA 60.605 55.000 0.00 0.00 0.00 3.18
626 628 1.206578 GTGTTGGCGATGAACACCG 59.793 57.895 11.60 0.00 44.95 4.94
627 629 1.963855 TGTTGGCGATGAACACCGG 60.964 57.895 0.00 0.00 0.00 5.28
631 633 3.799755 GCGATGAACACCGGCACC 61.800 66.667 0.00 0.00 0.00 5.01
632 634 2.358125 CGATGAACACCGGCACCA 60.358 61.111 0.00 0.00 0.00 4.17
633 635 2.677003 CGATGAACACCGGCACCAC 61.677 63.158 0.00 0.00 0.00 4.16
634 636 2.282180 ATGAACACCGGCACCACC 60.282 61.111 0.00 0.00 0.00 4.61
645 647 3.663176 CACCACCGCACCAGCTTG 61.663 66.667 0.00 0.00 39.10 4.01
646 648 4.954970 ACCACCGCACCAGCTTGG 62.955 66.667 0.00 0.00 43.59 3.61
649 651 3.636231 ACCGCACCAGCTTGGCTA 61.636 61.111 2.50 0.00 42.67 3.93
650 652 3.127533 CCGCACCAGCTTGGCTAC 61.128 66.667 2.50 0.00 42.67 3.58
651 653 3.127533 CGCACCAGCTTGGCTACC 61.128 66.667 2.50 0.00 42.67 3.18
652 654 2.352805 GCACCAGCTTGGCTACCT 59.647 61.111 2.50 0.00 42.67 3.08
653 655 1.746991 GCACCAGCTTGGCTACCTC 60.747 63.158 2.50 0.00 42.67 3.85
654 656 1.986413 CACCAGCTTGGCTACCTCT 59.014 57.895 2.50 0.00 42.67 3.69
655 657 1.195115 CACCAGCTTGGCTACCTCTA 58.805 55.000 2.50 0.00 42.67 2.43
656 658 1.765314 CACCAGCTTGGCTACCTCTAT 59.235 52.381 2.50 0.00 42.67 1.98
657 659 1.765314 ACCAGCTTGGCTACCTCTATG 59.235 52.381 2.50 0.00 42.67 2.23
658 660 1.542108 CCAGCTTGGCTACCTCTATGC 60.542 57.143 0.00 0.00 36.40 3.14
659 661 0.761802 AGCTTGGCTACCTCTATGCC 59.238 55.000 0.00 0.00 46.26 4.40
660 662 0.250510 GCTTGGCTACCTCTATGCCC 60.251 60.000 0.00 0.00 45.56 5.36
661 663 1.428869 CTTGGCTACCTCTATGCCCT 58.571 55.000 0.00 0.00 45.56 5.19
662 664 1.346068 CTTGGCTACCTCTATGCCCTC 59.654 57.143 0.00 0.00 45.56 4.30
663 665 0.471971 TGGCTACCTCTATGCCCTCC 60.472 60.000 0.00 0.00 45.56 4.30
664 666 0.471971 GGCTACCTCTATGCCCTCCA 60.472 60.000 0.00 0.00 40.71 3.86
665 667 0.682292 GCTACCTCTATGCCCTCCAC 59.318 60.000 0.00 0.00 0.00 4.02
666 668 1.759562 GCTACCTCTATGCCCTCCACT 60.760 57.143 0.00 0.00 0.00 4.00
667 669 2.491086 GCTACCTCTATGCCCTCCACTA 60.491 54.545 0.00 0.00 0.00 2.74
668 670 3.819754 GCTACCTCTATGCCCTCCACTAT 60.820 52.174 0.00 0.00 0.00 2.12
669 671 2.614259 ACCTCTATGCCCTCCACTATG 58.386 52.381 0.00 0.00 0.00 2.23
670 672 2.090494 ACCTCTATGCCCTCCACTATGT 60.090 50.000 0.00 0.00 0.00 2.29
671 673 2.564947 CCTCTATGCCCTCCACTATGTC 59.435 54.545 0.00 0.00 0.00 3.06
672 674 2.564947 CTCTATGCCCTCCACTATGTCC 59.435 54.545 0.00 0.00 0.00 4.02
673 675 1.273606 CTATGCCCTCCACTATGTCCG 59.726 57.143 0.00 0.00 0.00 4.79
674 676 0.691078 ATGCCCTCCACTATGTCCGT 60.691 55.000 0.00 0.00 0.00 4.69
675 677 1.327690 TGCCCTCCACTATGTCCGTC 61.328 60.000 0.00 0.00 0.00 4.79
676 678 1.734137 CCCTCCACTATGTCCGTCG 59.266 63.158 0.00 0.00 0.00 5.12
677 679 1.734137 CCTCCACTATGTCCGTCGG 59.266 63.158 4.39 4.39 0.00 4.79
678 680 1.065928 CTCCACTATGTCCGTCGGC 59.934 63.158 6.34 2.31 0.00 5.54
679 681 1.663379 CTCCACTATGTCCGTCGGCA 61.663 60.000 6.34 8.67 0.00 5.69
680 682 1.216977 CCACTATGTCCGTCGGCAA 59.783 57.895 6.34 0.00 0.00 4.52
681 683 0.806102 CCACTATGTCCGTCGGCAAG 60.806 60.000 6.34 10.29 0.00 4.01
682 684 0.108804 CACTATGTCCGTCGGCAAGT 60.109 55.000 6.34 10.83 0.00 3.16
683 685 0.606604 ACTATGTCCGTCGGCAAGTT 59.393 50.000 6.34 0.00 0.00 2.66
684 686 1.278238 CTATGTCCGTCGGCAAGTTC 58.722 55.000 6.34 0.00 0.00 3.01
685 687 0.457166 TATGTCCGTCGGCAAGTTCG 60.457 55.000 6.34 0.00 0.00 3.95
686 688 3.774702 GTCCGTCGGCAAGTTCGC 61.775 66.667 6.34 0.00 0.00 4.70
694 696 3.903783 GCAAGTTCGCCATGGCTA 58.096 55.556 33.07 21.58 39.32 3.93
695 697 1.723870 GCAAGTTCGCCATGGCTAG 59.276 57.895 33.07 19.53 39.32 3.42
696 698 1.723870 CAAGTTCGCCATGGCTAGC 59.276 57.895 33.07 24.56 39.32 3.42
697 699 1.452108 AAGTTCGCCATGGCTAGCC 60.452 57.895 33.07 27.71 39.32 3.93
698 700 3.272334 GTTCGCCATGGCTAGCCG 61.272 66.667 33.07 18.02 39.42 5.52
699 701 3.781307 TTCGCCATGGCTAGCCGT 61.781 61.111 33.07 25.94 39.42 5.68
700 702 3.733344 TTCGCCATGGCTAGCCGTC 62.733 63.158 33.07 14.61 39.42 4.79
702 704 4.937431 GCCATGGCTAGCCGTCCC 62.937 72.222 29.98 15.25 39.42 4.46
703 705 4.256180 CCATGGCTAGCCGTCCCC 62.256 72.222 26.12 2.15 39.42 4.81
704 706 4.609018 CATGGCTAGCCGTCCCCG 62.609 72.222 26.12 11.03 39.42 5.73
707 709 4.832608 GGCTAGCCGTCCCCGTTG 62.833 72.222 20.16 0.00 0.00 4.10
708 710 4.078516 GCTAGCCGTCCCCGTTGT 62.079 66.667 2.29 0.00 0.00 3.32
709 711 2.183555 CTAGCCGTCCCCGTTGTC 59.816 66.667 0.00 0.00 0.00 3.18
710 712 2.601067 TAGCCGTCCCCGTTGTCA 60.601 61.111 0.00 0.00 0.00 3.58
711 713 1.956629 CTAGCCGTCCCCGTTGTCAT 61.957 60.000 0.00 0.00 0.00 3.06
712 714 0.683828 TAGCCGTCCCCGTTGTCATA 60.684 55.000 0.00 0.00 0.00 2.15
713 715 1.078988 GCCGTCCCCGTTGTCATAA 60.079 57.895 0.00 0.00 0.00 1.90
714 716 0.674269 GCCGTCCCCGTTGTCATAAA 60.674 55.000 0.00 0.00 0.00 1.40
715 717 1.081094 CCGTCCCCGTTGTCATAAAC 58.919 55.000 0.00 0.00 0.00 2.01
716 718 1.608542 CCGTCCCCGTTGTCATAAACA 60.609 52.381 0.00 0.00 35.59 2.83
717 719 1.461897 CGTCCCCGTTGTCATAAACAC 59.538 52.381 0.00 0.00 37.70 3.32
718 720 2.496111 GTCCCCGTTGTCATAAACACA 58.504 47.619 0.00 0.00 37.70 3.72
719 721 2.224784 GTCCCCGTTGTCATAAACACAC 59.775 50.000 0.00 0.00 37.70 3.82
720 722 2.158798 TCCCCGTTGTCATAAACACACA 60.159 45.455 0.00 0.00 37.70 3.72
721 723 2.817258 CCCCGTTGTCATAAACACACAT 59.183 45.455 0.00 0.00 37.70 3.21
722 724 3.119990 CCCCGTTGTCATAAACACACATC 60.120 47.826 0.00 0.00 37.70 3.06
723 725 3.751175 CCCGTTGTCATAAACACACATCT 59.249 43.478 0.00 0.00 37.70 2.90
724 726 4.142902 CCCGTTGTCATAAACACACATCTC 60.143 45.833 0.00 0.00 37.70 2.75
725 727 4.434198 CCGTTGTCATAAACACACATCTCG 60.434 45.833 0.00 0.00 37.70 4.04
726 728 4.384547 CGTTGTCATAAACACACATCTCGA 59.615 41.667 0.00 0.00 37.70 4.04
727 729 5.062183 CGTTGTCATAAACACACATCTCGAT 59.938 40.000 0.00 0.00 37.70 3.59
728 730 6.470160 GTTGTCATAAACACACATCTCGATC 58.530 40.000 0.00 0.00 37.70 3.69
729 731 4.798387 TGTCATAAACACACATCTCGATCG 59.202 41.667 9.36 9.36 31.20 3.69
730 732 4.798907 GTCATAAACACACATCTCGATCGT 59.201 41.667 15.94 0.00 0.00 3.73
731 733 4.798387 TCATAAACACACATCTCGATCGTG 59.202 41.667 15.94 13.26 36.70 4.35
732 734 1.350193 AACACACATCTCGATCGTGC 58.650 50.000 15.94 0.00 33.89 5.34
733 735 0.458543 ACACACATCTCGATCGTGCC 60.459 55.000 15.94 0.00 33.89 5.01
734 736 1.141881 ACACATCTCGATCGTGCCC 59.858 57.895 15.94 0.00 33.89 5.36
735 737 1.592669 CACATCTCGATCGTGCCCC 60.593 63.158 15.94 0.00 0.00 5.80
736 738 2.029666 CATCTCGATCGTGCCCCC 59.970 66.667 15.94 0.00 0.00 5.40
737 739 3.606662 ATCTCGATCGTGCCCCCG 61.607 66.667 15.94 0.00 0.00 5.73
742 744 3.234730 GATCGTGCCCCCGGAGAT 61.235 66.667 0.73 0.00 0.00 2.75
743 745 3.521529 GATCGTGCCCCCGGAGATG 62.522 68.421 0.73 0.00 0.00 2.90
746 748 4.864334 GTGCCCCCGGAGATGCTG 62.864 72.222 0.73 0.00 0.00 4.41
748 750 4.247380 GCCCCCGGAGATGCTGAG 62.247 72.222 0.73 0.00 0.00 3.35
749 751 2.444706 CCCCCGGAGATGCTGAGA 60.445 66.667 0.73 0.00 0.00 3.27
750 752 2.506061 CCCCCGGAGATGCTGAGAG 61.506 68.421 0.73 0.00 0.00 3.20
751 753 2.506061 CCCCGGAGATGCTGAGAGG 61.506 68.421 0.73 0.00 0.00 3.69
752 754 1.456518 CCCGGAGATGCTGAGAGGA 60.457 63.158 0.73 0.00 0.00 3.71
753 755 1.739049 CCGGAGATGCTGAGAGGAC 59.261 63.158 0.00 0.00 0.00 3.85
754 756 1.739049 CGGAGATGCTGAGAGGACC 59.261 63.158 0.00 0.00 0.00 4.46
755 757 0.754957 CGGAGATGCTGAGAGGACCT 60.755 60.000 0.00 0.00 0.00 3.85
756 758 1.039856 GGAGATGCTGAGAGGACCTC 58.960 60.000 14.15 14.15 42.30 3.85
757 759 0.667993 GAGATGCTGAGAGGACCTCG 59.332 60.000 15.97 3.20 44.92 4.63
758 760 0.257328 AGATGCTGAGAGGACCTCGA 59.743 55.000 15.97 6.01 44.92 4.04
759 761 1.133513 AGATGCTGAGAGGACCTCGAT 60.134 52.381 15.97 0.00 44.92 3.59
760 762 1.000385 GATGCTGAGAGGACCTCGATG 60.000 57.143 15.97 10.46 44.92 3.84
761 763 1.039785 TGCTGAGAGGACCTCGATGG 61.040 60.000 15.97 8.77 44.92 3.51
762 764 1.739049 CTGAGAGGACCTCGATGGC 59.261 63.158 15.97 5.33 44.92 4.40
763 765 1.743321 CTGAGAGGACCTCGATGGCC 61.743 65.000 15.97 4.04 44.92 5.36
764 766 2.835431 AGAGGACCTCGATGGCCG 60.835 66.667 15.97 0.00 40.22 6.13
765 767 3.148279 GAGGACCTCGATGGCCGT 61.148 66.667 5.55 0.00 40.22 5.68
766 768 3.432051 GAGGACCTCGATGGCCGTG 62.432 68.421 0.00 0.00 40.22 4.94
768 770 4.148825 GACCTCGATGGCCGTGCT 62.149 66.667 0.00 0.00 40.22 4.40
769 771 4.457496 ACCTCGATGGCCGTGCTG 62.457 66.667 0.00 0.00 40.22 4.41
793 795 4.298744 GCCATAGGCTCATTTTCACTTC 57.701 45.455 0.00 0.00 46.69 3.01
794 796 3.067320 GCCATAGGCTCATTTTCACTTCC 59.933 47.826 0.00 0.00 46.69 3.46
795 797 4.530875 CCATAGGCTCATTTTCACTTCCT 58.469 43.478 0.00 0.00 0.00 3.36
796 798 4.952335 CCATAGGCTCATTTTCACTTCCTT 59.048 41.667 0.00 0.00 0.00 3.36
797 799 5.067023 CCATAGGCTCATTTTCACTTCCTTC 59.933 44.000 0.00 0.00 0.00 3.46
798 800 3.425659 AGGCTCATTTTCACTTCCTTCC 58.574 45.455 0.00 0.00 0.00 3.46
799 801 2.493675 GGCTCATTTTCACTTCCTTCCC 59.506 50.000 0.00 0.00 0.00 3.97
800 802 2.162408 GCTCATTTTCACTTCCTTCCCG 59.838 50.000 0.00 0.00 0.00 5.14
801 803 2.159382 TCATTTTCACTTCCTTCCCGC 58.841 47.619 0.00 0.00 0.00 6.13
802 804 1.885887 CATTTTCACTTCCTTCCCGCA 59.114 47.619 0.00 0.00 0.00 5.69
803 805 1.604604 TTTTCACTTCCTTCCCGCAG 58.395 50.000 0.00 0.00 0.00 5.18
804 806 0.762418 TTTCACTTCCTTCCCGCAGA 59.238 50.000 0.00 0.00 0.00 4.26
805 807 0.984230 TTCACTTCCTTCCCGCAGAT 59.016 50.000 0.00 0.00 0.00 2.90
806 808 0.250234 TCACTTCCTTCCCGCAGATG 59.750 55.000 0.00 0.00 0.00 2.90
807 809 1.078143 ACTTCCTTCCCGCAGATGC 60.078 57.895 0.00 0.00 37.78 3.91
808 810 1.222936 CTTCCTTCCCGCAGATGCT 59.777 57.895 2.95 0.00 39.32 3.79
809 811 0.465705 CTTCCTTCCCGCAGATGCTA 59.534 55.000 2.95 0.00 39.32 3.49
810 812 0.178068 TTCCTTCCCGCAGATGCTAC 59.822 55.000 2.95 0.00 39.32 3.58
811 813 0.975556 TCCTTCCCGCAGATGCTACA 60.976 55.000 2.95 0.00 39.32 2.74
812 814 0.107456 CCTTCCCGCAGATGCTACAT 59.893 55.000 2.95 0.00 39.32 2.29
813 815 1.475751 CCTTCCCGCAGATGCTACATT 60.476 52.381 2.95 0.00 39.32 2.71
814 816 2.224281 CCTTCCCGCAGATGCTACATTA 60.224 50.000 2.95 0.00 39.32 1.90
815 817 2.820059 TCCCGCAGATGCTACATTAG 57.180 50.000 2.95 0.00 39.32 1.73
816 818 2.316108 TCCCGCAGATGCTACATTAGA 58.684 47.619 2.95 0.00 39.32 2.10
817 819 2.297315 TCCCGCAGATGCTACATTAGAG 59.703 50.000 2.95 0.00 39.32 2.43
818 820 2.611473 CCCGCAGATGCTACATTAGAGG 60.611 54.545 2.95 0.00 39.32 3.69
819 821 2.064762 CGCAGATGCTACATTAGAGGC 58.935 52.381 2.95 0.00 39.32 4.70
820 822 2.546584 CGCAGATGCTACATTAGAGGCA 60.547 50.000 2.95 0.00 39.32 4.75
821 823 3.470709 GCAGATGCTACATTAGAGGCAA 58.529 45.455 0.00 0.00 38.21 4.52
822 824 3.879295 GCAGATGCTACATTAGAGGCAAA 59.121 43.478 0.00 0.00 38.21 3.68
823 825 4.260948 GCAGATGCTACATTAGAGGCAAAC 60.261 45.833 0.00 0.00 38.21 2.93
824 826 4.877823 CAGATGCTACATTAGAGGCAAACA 59.122 41.667 0.00 0.00 38.21 2.83
825 827 5.007430 CAGATGCTACATTAGAGGCAAACAG 59.993 44.000 0.00 0.00 38.21 3.16
826 828 4.286297 TGCTACATTAGAGGCAAACAGT 57.714 40.909 0.00 0.00 0.00 3.55
827 829 4.651778 TGCTACATTAGAGGCAAACAGTT 58.348 39.130 0.00 0.00 0.00 3.16
828 830 5.800296 TGCTACATTAGAGGCAAACAGTTA 58.200 37.500 0.00 0.00 0.00 2.24
829 831 5.642063 TGCTACATTAGAGGCAAACAGTTAC 59.358 40.000 0.00 0.00 0.00 2.50
830 832 5.875359 GCTACATTAGAGGCAAACAGTTACT 59.125 40.000 0.00 0.00 0.00 2.24
831 833 6.183360 GCTACATTAGAGGCAAACAGTTACTG 60.183 42.308 11.21 11.21 37.52 2.74
832 834 5.003804 ACATTAGAGGCAAACAGTTACTGG 58.996 41.667 17.21 0.00 35.51 4.00
833 835 4.699925 TTAGAGGCAAACAGTTACTGGT 57.300 40.909 17.21 7.30 35.51 4.00
834 836 5.811796 TTAGAGGCAAACAGTTACTGGTA 57.188 39.130 17.21 0.00 35.51 3.25
835 837 4.004196 AGAGGCAAACAGTTACTGGTAC 57.996 45.455 17.21 6.08 35.51 3.34
836 838 3.646637 AGAGGCAAACAGTTACTGGTACT 59.353 43.478 17.21 9.35 35.51 2.73
837 839 3.995048 GAGGCAAACAGTTACTGGTACTC 59.005 47.826 17.21 14.04 35.51 2.59
838 840 3.072211 GGCAAACAGTTACTGGTACTCC 58.928 50.000 17.21 8.33 35.51 3.85
839 841 3.495453 GGCAAACAGTTACTGGTACTCCA 60.495 47.826 17.21 0.00 42.05 3.86
840 842 3.497262 GCAAACAGTTACTGGTACTCCAC 59.503 47.826 17.21 0.00 39.03 4.02
841 843 4.742743 GCAAACAGTTACTGGTACTCCACT 60.743 45.833 17.21 0.00 39.03 4.00
842 844 5.510179 GCAAACAGTTACTGGTACTCCACTA 60.510 44.000 17.21 0.00 39.03 2.74
843 845 6.698380 CAAACAGTTACTGGTACTCCACTAT 58.302 40.000 17.21 0.00 39.03 2.12
844 846 6.930068 AACAGTTACTGGTACTCCACTATT 57.070 37.500 17.21 0.00 39.03 1.73
845 847 6.930068 ACAGTTACTGGTACTCCACTATTT 57.070 37.500 17.21 0.00 39.03 1.40
846 848 7.312415 ACAGTTACTGGTACTCCACTATTTT 57.688 36.000 17.21 0.00 39.03 1.82
847 849 7.384477 ACAGTTACTGGTACTCCACTATTTTC 58.616 38.462 17.21 0.00 39.03 2.29
848 850 6.530534 CAGTTACTGGTACTCCACTATTTTCG 59.469 42.308 4.14 0.00 39.03 3.46
849 851 6.210185 AGTTACTGGTACTCCACTATTTTCGT 59.790 38.462 0.00 0.00 39.03 3.85
850 852 5.479124 ACTGGTACTCCACTATTTTCGTT 57.521 39.130 0.00 0.00 39.03 3.85
851 853 5.476614 ACTGGTACTCCACTATTTTCGTTC 58.523 41.667 0.00 0.00 39.03 3.95
852 854 5.245526 ACTGGTACTCCACTATTTTCGTTCT 59.754 40.000 0.00 0.00 39.03 3.01
853 855 6.105397 TGGTACTCCACTATTTTCGTTCTT 57.895 37.500 0.00 0.00 39.03 2.52
854 856 6.527423 TGGTACTCCACTATTTTCGTTCTTT 58.473 36.000 0.00 0.00 39.03 2.52
855 857 6.993902 TGGTACTCCACTATTTTCGTTCTTTT 59.006 34.615 0.00 0.00 39.03 2.27
856 858 7.499895 TGGTACTCCACTATTTTCGTTCTTTTT 59.500 33.333 0.00 0.00 39.03 1.94
857 859 8.013947 GGTACTCCACTATTTTCGTTCTTTTTC 58.986 37.037 0.00 0.00 0.00 2.29
858 860 6.967135 ACTCCACTATTTTCGTTCTTTTTCC 58.033 36.000 0.00 0.00 0.00 3.13
859 861 6.544564 ACTCCACTATTTTCGTTCTTTTTCCA 59.455 34.615 0.00 0.00 0.00 3.53
860 862 7.067737 ACTCCACTATTTTCGTTCTTTTTCCAA 59.932 33.333 0.00 0.00 0.00 3.53
861 863 7.197703 TCCACTATTTTCGTTCTTTTTCCAAC 58.802 34.615 0.00 0.00 0.00 3.77
862 864 6.141685 CCACTATTTTCGTTCTTTTTCCAACG 59.858 38.462 0.00 0.00 45.43 4.10
867 869 2.904915 CGTTCTTTTTCCAACGAGAGC 58.095 47.619 0.00 0.00 46.70 4.09
868 870 2.349532 CGTTCTTTTTCCAACGAGAGCC 60.350 50.000 0.00 0.00 46.70 4.70
869 871 2.616842 GTTCTTTTTCCAACGAGAGCCA 59.383 45.455 0.00 0.00 0.00 4.75
870 872 2.218603 TCTTTTTCCAACGAGAGCCAC 58.781 47.619 0.00 0.00 0.00 5.01
871 873 1.946768 CTTTTTCCAACGAGAGCCACA 59.053 47.619 0.00 0.00 0.00 4.17
872 874 2.270352 TTTTCCAACGAGAGCCACAT 57.730 45.000 0.00 0.00 0.00 3.21
873 875 1.522668 TTTCCAACGAGAGCCACATG 58.477 50.000 0.00 0.00 0.00 3.21
874 876 0.955428 TTCCAACGAGAGCCACATGC 60.955 55.000 0.00 0.00 41.71 4.06
875 877 1.672030 CCAACGAGAGCCACATGCA 60.672 57.895 0.00 0.00 44.83 3.96
876 878 1.642037 CCAACGAGAGCCACATGCAG 61.642 60.000 0.00 0.00 44.83 4.41
877 879 0.671472 CAACGAGAGCCACATGCAGA 60.671 55.000 0.00 0.00 44.83 4.26
878 880 0.035317 AACGAGAGCCACATGCAGAA 59.965 50.000 0.00 0.00 44.83 3.02
879 881 0.671781 ACGAGAGCCACATGCAGAAC 60.672 55.000 0.00 0.00 44.83 3.01
880 882 0.390866 CGAGAGCCACATGCAGAACT 60.391 55.000 0.00 0.00 44.83 3.01
881 883 1.085091 GAGAGCCACATGCAGAACTG 58.915 55.000 0.00 0.00 44.83 3.16
896 898 5.083533 CAGAACTGCTCTAGGAATTGAGT 57.916 43.478 0.00 0.00 31.12 3.41
897 899 4.869297 CAGAACTGCTCTAGGAATTGAGTG 59.131 45.833 0.00 0.00 31.12 3.51
898 900 3.258971 ACTGCTCTAGGAATTGAGTGC 57.741 47.619 0.00 0.00 33.75 4.40
899 901 2.836981 ACTGCTCTAGGAATTGAGTGCT 59.163 45.455 0.00 0.00 34.16 4.40
900 902 3.118811 ACTGCTCTAGGAATTGAGTGCTC 60.119 47.826 0.00 0.00 34.16 4.26
901 903 2.833943 TGCTCTAGGAATTGAGTGCTCA 59.166 45.455 0.00 0.00 37.91 4.26
902 904 3.194062 GCTCTAGGAATTGAGTGCTCAC 58.806 50.000 0.79 0.00 39.66 3.51
903 905 3.791245 CTCTAGGAATTGAGTGCTCACC 58.209 50.000 0.79 0.69 39.66 4.02
904 906 3.173151 TCTAGGAATTGAGTGCTCACCA 58.827 45.455 0.79 0.00 39.66 4.17
905 907 2.957402 AGGAATTGAGTGCTCACCAA 57.043 45.000 0.79 2.08 39.66 3.67
906 908 3.228188 AGGAATTGAGTGCTCACCAAA 57.772 42.857 0.79 0.00 39.66 3.28
907 909 3.565307 AGGAATTGAGTGCTCACCAAAA 58.435 40.909 0.79 0.00 39.66 2.44
908 910 3.319122 AGGAATTGAGTGCTCACCAAAAC 59.681 43.478 0.79 5.78 39.66 2.43
909 911 3.068024 GGAATTGAGTGCTCACCAAAACA 59.932 43.478 0.79 0.00 39.66 2.83
910 912 4.441356 GGAATTGAGTGCTCACCAAAACAA 60.441 41.667 0.79 0.00 39.66 2.83
911 913 4.734398 ATTGAGTGCTCACCAAAACAAA 57.266 36.364 0.79 0.00 39.66 2.83
912 914 4.527509 TTGAGTGCTCACCAAAACAAAA 57.472 36.364 0.79 0.00 39.66 2.44
913 915 3.843999 TGAGTGCTCACCAAAACAAAAC 58.156 40.909 0.00 0.00 34.14 2.43
914 916 3.256879 TGAGTGCTCACCAAAACAAAACA 59.743 39.130 0.00 0.00 34.14 2.83
915 917 3.848726 AGTGCTCACCAAAACAAAACAG 58.151 40.909 0.00 0.00 0.00 3.16
916 918 3.258123 AGTGCTCACCAAAACAAAACAGT 59.742 39.130 0.00 0.00 0.00 3.55
917 919 3.993736 GTGCTCACCAAAACAAAACAGTT 59.006 39.130 0.00 0.00 0.00 3.16
918 920 3.993081 TGCTCACCAAAACAAAACAGTTG 59.007 39.130 0.00 0.00 0.00 3.16
919 921 3.993736 GCTCACCAAAACAAAACAGTTGT 59.006 39.130 0.00 0.00 0.00 3.32
920 922 4.143137 GCTCACCAAAACAAAACAGTTGTG 60.143 41.667 1.46 1.46 36.65 3.33
922 924 3.738286 CCAAAACAAAACAGTTGTGGC 57.262 42.857 8.41 0.00 46.69 5.01
923 925 3.333804 CCAAAACAAAACAGTTGTGGCT 58.666 40.909 8.41 0.00 46.69 4.75
924 926 3.370672 CCAAAACAAAACAGTTGTGGCTC 59.629 43.478 8.41 0.00 46.69 4.70
925 927 4.244862 CAAAACAAAACAGTTGTGGCTCT 58.755 39.130 8.41 0.00 33.92 4.09
926 928 3.508744 AACAAAACAGTTGTGGCTCTG 57.491 42.857 8.41 0.00 37.65 3.35
927 929 1.750778 ACAAAACAGTTGTGGCTCTGG 59.249 47.619 8.41 0.00 36.17 3.86
928 930 2.023673 CAAAACAGTTGTGGCTCTGGA 58.976 47.619 0.00 0.00 36.17 3.86
929 931 1.680338 AAACAGTTGTGGCTCTGGAC 58.320 50.000 0.00 0.00 36.17 4.02
930 932 0.532862 AACAGTTGTGGCTCTGGACG 60.533 55.000 0.00 0.00 36.17 4.79
931 933 1.069765 CAGTTGTGGCTCTGGACGT 59.930 57.895 0.00 0.00 0.00 4.34
932 934 0.532862 CAGTTGTGGCTCTGGACGTT 60.533 55.000 0.00 0.00 0.00 3.99
933 935 0.180406 AGTTGTGGCTCTGGACGTTT 59.820 50.000 0.00 0.00 0.00 3.60
934 936 0.586802 GTTGTGGCTCTGGACGTTTC 59.413 55.000 0.00 0.00 0.00 2.78
935 937 0.878523 TTGTGGCTCTGGACGTTTCG 60.879 55.000 0.00 0.00 0.00 3.46
936 938 1.300697 GTGGCTCTGGACGTTTCGT 60.301 57.895 0.00 0.00 45.10 3.85
948 950 1.135721 ACGTTTCGTCCTGGGTATAGC 59.864 52.381 0.00 0.00 33.69 2.97
949 951 1.407979 CGTTTCGTCCTGGGTATAGCT 59.592 52.381 1.32 0.00 0.00 3.32
950 952 2.620115 CGTTTCGTCCTGGGTATAGCTA 59.380 50.000 0.00 0.00 0.00 3.32
951 953 3.304525 CGTTTCGTCCTGGGTATAGCTAG 60.305 52.174 8.24 8.24 0.00 3.42
952 954 1.906990 TCGTCCTGGGTATAGCTAGC 58.093 55.000 6.62 6.62 0.00 3.42
953 955 0.889306 CGTCCTGGGTATAGCTAGCC 59.111 60.000 12.13 4.06 44.35 3.93
954 956 1.268066 GTCCTGGGTATAGCTAGCCC 58.732 60.000 22.69 22.69 43.61 5.19
955 957 0.251653 TCCTGGGTATAGCTAGCCCG 60.252 60.000 23.39 18.82 45.19 6.13
956 958 0.251653 CCTGGGTATAGCTAGCCCGA 60.252 60.000 23.39 15.07 45.19 5.14
957 959 0.889306 CTGGGTATAGCTAGCCCGAC 59.111 60.000 23.39 6.52 45.19 4.79
958 960 0.186630 TGGGTATAGCTAGCCCGACA 59.813 55.000 23.39 9.89 45.19 4.35
959 961 0.889306 GGGTATAGCTAGCCCGACAG 59.111 60.000 17.32 0.00 39.23 3.51
960 962 0.244178 GGTATAGCTAGCCCGACAGC 59.756 60.000 12.13 0.00 38.09 4.40
962 964 1.200484 GTATAGCTAGCCCGACAGCTC 59.800 57.143 12.13 0.00 44.83 4.09
963 965 1.182385 ATAGCTAGCCCGACAGCTCC 61.182 60.000 12.13 0.00 44.83 4.70
964 966 2.567664 TAGCTAGCCCGACAGCTCCA 62.568 60.000 12.13 0.00 44.83 3.86
965 967 2.801631 GCTAGCCCGACAGCTCCAT 61.802 63.158 2.29 0.00 43.67 3.41
966 968 1.826024 CTAGCCCGACAGCTCCATT 59.174 57.895 0.00 0.00 43.67 3.16
967 969 1.040646 CTAGCCCGACAGCTCCATTA 58.959 55.000 0.00 0.00 43.67 1.90
968 970 1.620819 CTAGCCCGACAGCTCCATTAT 59.379 52.381 0.00 0.00 43.67 1.28
969 971 0.839946 AGCCCGACAGCTCCATTATT 59.160 50.000 0.00 0.00 39.48 1.40
970 972 1.212935 AGCCCGACAGCTCCATTATTT 59.787 47.619 0.00 0.00 39.48 1.40
971 973 1.604278 GCCCGACAGCTCCATTATTTC 59.396 52.381 0.00 0.00 0.00 2.17
972 974 2.222027 CCCGACAGCTCCATTATTTCC 58.778 52.381 0.00 0.00 0.00 3.13
973 975 2.158755 CCCGACAGCTCCATTATTTCCT 60.159 50.000 0.00 0.00 0.00 3.36
974 976 3.545703 CCGACAGCTCCATTATTTCCTT 58.454 45.455 0.00 0.00 0.00 3.36
975 977 3.947834 CCGACAGCTCCATTATTTCCTTT 59.052 43.478 0.00 0.00 0.00 3.11
976 978 4.035675 CCGACAGCTCCATTATTTCCTTTC 59.964 45.833 0.00 0.00 0.00 2.62
997 1000 0.758734 TCCATCTACCCATTGCGAGG 59.241 55.000 0.00 0.00 0.00 4.63
1010 1013 0.181114 TGCGAGGAGATGGAAATGGG 59.819 55.000 0.00 0.00 0.00 4.00
1018 1021 2.068277 GATGGAAATGGGAGCAGCGC 62.068 60.000 0.00 0.00 0.00 5.92
1050 1063 3.580319 GGGCTGGAGGTGGTGGTT 61.580 66.667 0.00 0.00 0.00 3.67
1652 2110 2.431683 GTGGCAGGTCTTGGAGCA 59.568 61.111 0.00 0.00 31.89 4.26
2532 4179 0.922626 GATCTGGCCCCCTTTCTTCT 59.077 55.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.532604 CGCTACTCAGTGACCCACCA 61.533 60.000 0.00 0.00 34.49 4.17
16 17 0.817654 CATCGCTACTCAGTGACCCA 59.182 55.000 0.00 0.00 43.86 4.51
75 76 0.693767 AGCCAGAGCCTTCCTATGCT 60.694 55.000 0.00 0.00 41.25 3.79
83 84 0.617935 GGAGAAGAAGCCAGAGCCTT 59.382 55.000 0.00 0.00 41.25 4.35
402 403 3.009916 AGGAGGACCTAAAGACTACACGA 59.990 47.826 0.00 0.00 45.83 4.35
485 487 4.202151 GGAAGCCTTCAAAGAAAGCAGAAA 60.202 41.667 6.80 0.00 0.00 2.52
570 572 7.013559 GGTTGAGTTACCTAAAAAGGCTTTACA 59.986 37.037 13.77 3.13 35.23 2.41
584 586 3.256704 TCAGGGATTGGTTGAGTTACCT 58.743 45.455 0.00 0.00 39.04 3.08
609 611 1.963855 CCGGTGTTCATCGCCAACA 60.964 57.895 0.00 0.00 46.24 3.33
610 612 2.867472 CCGGTGTTCATCGCCAAC 59.133 61.111 0.00 0.00 46.24 3.77
611 613 3.053291 GCCGGTGTTCATCGCCAA 61.053 61.111 1.90 0.00 46.24 4.52
612 614 4.321966 TGCCGGTGTTCATCGCCA 62.322 61.111 1.90 0.00 46.24 5.69
613 615 3.799755 GTGCCGGTGTTCATCGCC 61.800 66.667 1.90 0.00 42.80 5.54
614 616 3.799755 GGTGCCGGTGTTCATCGC 61.800 66.667 1.90 0.00 0.00 4.58
615 617 2.358125 TGGTGCCGGTGTTCATCG 60.358 61.111 1.90 0.00 0.00 3.84
616 618 2.332654 GGTGGTGCCGGTGTTCATC 61.333 63.158 1.90 0.00 0.00 2.92
617 619 2.282180 GGTGGTGCCGGTGTTCAT 60.282 61.111 1.90 0.00 0.00 2.57
628 630 3.663176 CAAGCTGGTGCGGTGGTG 61.663 66.667 0.00 0.00 45.42 4.17
629 631 4.954970 CCAAGCTGGTGCGGTGGT 62.955 66.667 0.00 0.00 45.42 4.16
631 633 3.899981 TAGCCAAGCTGGTGCGGTG 62.900 63.158 0.00 0.00 45.42 4.94
632 634 3.636231 TAGCCAAGCTGGTGCGGT 61.636 61.111 0.00 0.00 45.42 5.68
633 635 3.127533 GTAGCCAAGCTGGTGCGG 61.128 66.667 0.00 0.00 45.42 5.69
634 636 3.127533 GGTAGCCAAGCTGGTGCG 61.128 66.667 0.00 0.00 45.42 5.34
635 637 1.746991 GAGGTAGCCAAGCTGGTGC 60.747 63.158 0.00 0.00 40.46 5.01
636 638 1.195115 TAGAGGTAGCCAAGCTGGTG 58.805 55.000 0.00 0.00 40.46 4.17
637 639 1.765314 CATAGAGGTAGCCAAGCTGGT 59.235 52.381 0.00 0.00 40.46 4.00
638 640 1.542108 GCATAGAGGTAGCCAAGCTGG 60.542 57.143 0.00 0.00 40.10 4.85
639 641 1.876322 GCATAGAGGTAGCCAAGCTG 58.124 55.000 0.00 0.00 40.10 4.24
646 648 0.682292 GTGGAGGGCATAGAGGTAGC 59.318 60.000 0.00 0.00 0.00 3.58
647 649 2.390225 AGTGGAGGGCATAGAGGTAG 57.610 55.000 0.00 0.00 0.00 3.18
648 650 3.142217 ACATAGTGGAGGGCATAGAGGTA 59.858 47.826 0.00 0.00 0.00 3.08
649 651 2.090494 ACATAGTGGAGGGCATAGAGGT 60.090 50.000 0.00 0.00 0.00 3.85
650 652 2.564947 GACATAGTGGAGGGCATAGAGG 59.435 54.545 0.00 0.00 0.00 3.69
651 653 2.564947 GGACATAGTGGAGGGCATAGAG 59.435 54.545 0.00 0.00 0.00 2.43
652 654 2.609747 GGACATAGTGGAGGGCATAGA 58.390 52.381 0.00 0.00 0.00 1.98
653 655 1.273606 CGGACATAGTGGAGGGCATAG 59.726 57.143 0.00 0.00 0.00 2.23
654 656 1.338107 CGGACATAGTGGAGGGCATA 58.662 55.000 0.00 0.00 0.00 3.14
655 657 0.691078 ACGGACATAGTGGAGGGCAT 60.691 55.000 0.00 0.00 0.00 4.40
656 658 1.305802 ACGGACATAGTGGAGGGCA 60.306 57.895 0.00 0.00 0.00 5.36
657 659 1.442148 GACGGACATAGTGGAGGGC 59.558 63.158 0.00 0.00 0.00 5.19
658 660 1.734137 CGACGGACATAGTGGAGGG 59.266 63.158 0.00 0.00 0.00 4.30
659 661 1.734137 CCGACGGACATAGTGGAGG 59.266 63.158 8.64 0.00 0.00 4.30
660 662 1.065928 GCCGACGGACATAGTGGAG 59.934 63.158 20.50 0.00 0.00 3.86
661 663 1.252215 TTGCCGACGGACATAGTGGA 61.252 55.000 20.50 0.00 0.00 4.02
662 664 0.806102 CTTGCCGACGGACATAGTGG 60.806 60.000 20.50 0.84 0.00 4.00
663 665 0.108804 ACTTGCCGACGGACATAGTG 60.109 55.000 20.50 8.38 0.00 2.74
664 666 0.606604 AACTTGCCGACGGACATAGT 59.393 50.000 20.50 16.14 0.00 2.12
665 667 1.278238 GAACTTGCCGACGGACATAG 58.722 55.000 20.50 15.59 0.00 2.23
666 668 0.457166 CGAACTTGCCGACGGACATA 60.457 55.000 20.50 5.71 0.00 2.29
667 669 1.736645 CGAACTTGCCGACGGACAT 60.737 57.895 20.50 0.17 0.00 3.06
668 670 2.355363 CGAACTTGCCGACGGACA 60.355 61.111 20.50 12.61 0.00 4.02
669 671 3.774702 GCGAACTTGCCGACGGAC 61.775 66.667 20.50 9.82 0.00 4.79
685 687 4.937431 GGGACGGCTAGCCATGGC 62.937 72.222 32.47 30.12 42.33 4.40
686 688 4.256180 GGGGACGGCTAGCCATGG 62.256 72.222 32.47 19.10 35.37 3.66
696 698 1.608542 TGTTTATGACAACGGGGACGG 60.609 52.381 0.00 0.00 46.63 4.79
698 700 2.224784 GTGTGTTTATGACAACGGGGAC 59.775 50.000 0.00 0.00 40.65 4.46
699 701 2.158798 TGTGTGTTTATGACAACGGGGA 60.159 45.455 0.00 0.00 40.65 4.81
700 702 2.222886 TGTGTGTTTATGACAACGGGG 58.777 47.619 0.00 0.00 40.65 5.73
701 703 3.751175 AGATGTGTGTTTATGACAACGGG 59.249 43.478 0.00 0.00 40.65 5.28
702 704 4.434198 CGAGATGTGTGTTTATGACAACGG 60.434 45.833 0.00 0.00 40.65 4.44
703 705 4.384547 TCGAGATGTGTGTTTATGACAACG 59.615 41.667 0.00 0.00 40.65 4.10
704 706 5.839262 TCGAGATGTGTGTTTATGACAAC 57.161 39.130 0.00 0.00 40.65 3.32
705 707 5.288472 CGATCGAGATGTGTGTTTATGACAA 59.712 40.000 10.26 0.00 40.65 3.18
706 708 4.798387 CGATCGAGATGTGTGTTTATGACA 59.202 41.667 10.26 0.00 35.42 3.58
707 709 4.798907 ACGATCGAGATGTGTGTTTATGAC 59.201 41.667 24.34 0.00 0.00 3.06
708 710 4.798387 CACGATCGAGATGTGTGTTTATGA 59.202 41.667 24.34 0.00 0.00 2.15
709 711 4.548916 GCACGATCGAGATGTGTGTTTATG 60.549 45.833 24.34 5.14 36.04 1.90
710 712 3.551890 GCACGATCGAGATGTGTGTTTAT 59.448 43.478 24.34 0.00 36.04 1.40
711 713 2.921121 GCACGATCGAGATGTGTGTTTA 59.079 45.455 24.34 0.00 36.04 2.01
712 714 1.726791 GCACGATCGAGATGTGTGTTT 59.273 47.619 24.34 0.00 36.04 2.83
713 715 1.350193 GCACGATCGAGATGTGTGTT 58.650 50.000 24.34 0.00 36.04 3.32
714 716 0.458543 GGCACGATCGAGATGTGTGT 60.459 55.000 24.34 0.00 36.04 3.72
715 717 1.148157 GGGCACGATCGAGATGTGTG 61.148 60.000 24.34 8.76 36.04 3.82
716 718 1.141881 GGGCACGATCGAGATGTGT 59.858 57.895 24.34 0.00 36.04 3.72
717 719 1.592669 GGGGCACGATCGAGATGTG 60.593 63.158 24.34 10.35 36.70 3.21
718 720 2.797278 GGGGGCACGATCGAGATGT 61.797 63.158 24.34 0.00 0.00 3.06
719 721 2.029666 GGGGGCACGATCGAGATG 59.970 66.667 24.34 11.16 0.00 2.90
720 722 3.606662 CGGGGGCACGATCGAGAT 61.607 66.667 24.34 0.00 35.47 2.75
725 727 3.234730 ATCTCCGGGGGCACGATC 61.235 66.667 0.00 0.00 35.47 3.69
726 728 3.550431 CATCTCCGGGGGCACGAT 61.550 66.667 0.00 0.00 35.47 3.73
729 731 4.864334 CAGCATCTCCGGGGGCAC 62.864 72.222 0.00 0.00 0.00 5.01
731 733 4.247380 CTCAGCATCTCCGGGGGC 62.247 72.222 0.00 0.00 0.00 5.80
732 734 2.444706 TCTCAGCATCTCCGGGGG 60.445 66.667 0.00 0.00 0.00 5.40
733 735 2.506061 CCTCTCAGCATCTCCGGGG 61.506 68.421 0.00 0.00 0.00 5.73
734 736 1.456518 TCCTCTCAGCATCTCCGGG 60.457 63.158 0.00 0.00 0.00 5.73
735 737 1.739049 GTCCTCTCAGCATCTCCGG 59.261 63.158 0.00 0.00 0.00 5.14
736 738 0.754957 AGGTCCTCTCAGCATCTCCG 60.755 60.000 0.00 0.00 0.00 4.63
737 739 1.039856 GAGGTCCTCTCAGCATCTCC 58.960 60.000 12.02 0.00 42.02 3.71
738 740 0.667993 CGAGGTCCTCTCAGCATCTC 59.332 60.000 17.00 0.00 42.55 2.75
739 741 0.257328 TCGAGGTCCTCTCAGCATCT 59.743 55.000 17.00 0.00 42.55 2.90
740 742 1.000385 CATCGAGGTCCTCTCAGCATC 60.000 57.143 17.00 0.00 42.55 3.91
741 743 1.039068 CATCGAGGTCCTCTCAGCAT 58.961 55.000 17.00 0.00 42.55 3.79
742 744 1.039785 CCATCGAGGTCCTCTCAGCA 61.040 60.000 17.00 0.00 42.55 4.41
743 745 1.739049 CCATCGAGGTCCTCTCAGC 59.261 63.158 17.00 0.00 42.55 4.26
744 746 1.739049 GCCATCGAGGTCCTCTCAG 59.261 63.158 17.00 5.92 42.55 3.35
745 747 1.758514 GGCCATCGAGGTCCTCTCA 60.759 63.158 17.00 3.65 42.55 3.27
746 748 2.851071 CGGCCATCGAGGTCCTCTC 61.851 68.421 17.00 1.16 39.53 3.20
747 749 2.835431 CGGCCATCGAGGTCCTCT 60.835 66.667 17.00 0.00 39.53 3.69
748 750 3.148279 ACGGCCATCGAGGTCCTC 61.148 66.667 9.05 9.05 39.53 3.71
749 751 3.461773 CACGGCCATCGAGGTCCT 61.462 66.667 2.24 0.00 39.53 3.85
751 753 4.148825 AGCACGGCCATCGAGGTC 62.149 66.667 2.24 0.00 42.43 3.85
752 754 4.457496 CAGCACGGCCATCGAGGT 62.457 66.667 2.24 0.00 42.43 3.85
773 775 4.530875 AGGAAGTGAAAATGAGCCTATGG 58.469 43.478 0.00 0.00 0.00 2.74
774 776 5.067023 GGAAGGAAGTGAAAATGAGCCTATG 59.933 44.000 0.00 0.00 0.00 2.23
775 777 5.196695 GGAAGGAAGTGAAAATGAGCCTAT 58.803 41.667 0.00 0.00 0.00 2.57
776 778 4.567747 GGGAAGGAAGTGAAAATGAGCCTA 60.568 45.833 0.00 0.00 0.00 3.93
777 779 3.425659 GGAAGGAAGTGAAAATGAGCCT 58.574 45.455 0.00 0.00 0.00 4.58
778 780 2.493675 GGGAAGGAAGTGAAAATGAGCC 59.506 50.000 0.00 0.00 0.00 4.70
779 781 2.162408 CGGGAAGGAAGTGAAAATGAGC 59.838 50.000 0.00 0.00 0.00 4.26
780 782 2.162408 GCGGGAAGGAAGTGAAAATGAG 59.838 50.000 0.00 0.00 0.00 2.90
781 783 2.159382 GCGGGAAGGAAGTGAAAATGA 58.841 47.619 0.00 0.00 0.00 2.57
782 784 1.885887 TGCGGGAAGGAAGTGAAAATG 59.114 47.619 0.00 0.00 0.00 2.32
783 785 2.162681 CTGCGGGAAGGAAGTGAAAAT 58.837 47.619 0.00 0.00 0.00 1.82
784 786 1.142060 TCTGCGGGAAGGAAGTGAAAA 59.858 47.619 0.00 0.00 0.00 2.29
785 787 0.762418 TCTGCGGGAAGGAAGTGAAA 59.238 50.000 0.00 0.00 0.00 2.69
786 788 0.984230 ATCTGCGGGAAGGAAGTGAA 59.016 50.000 0.00 0.00 0.00 3.18
787 789 0.250234 CATCTGCGGGAAGGAAGTGA 59.750 55.000 0.00 0.00 0.00 3.41
788 790 1.372087 GCATCTGCGGGAAGGAAGTG 61.372 60.000 0.00 0.00 0.00 3.16
789 791 1.078143 GCATCTGCGGGAAGGAAGT 60.078 57.895 0.00 0.00 0.00 3.01
790 792 3.819188 GCATCTGCGGGAAGGAAG 58.181 61.111 0.00 0.00 0.00 3.46
800 802 3.117491 TGCCTCTAATGTAGCATCTGC 57.883 47.619 0.00 0.00 42.49 4.26
801 803 4.877823 TGTTTGCCTCTAATGTAGCATCTG 59.122 41.667 0.00 0.00 34.72 2.90
802 804 5.102953 TGTTTGCCTCTAATGTAGCATCT 57.897 39.130 0.00 0.00 34.72 2.90
803 805 4.878397 ACTGTTTGCCTCTAATGTAGCATC 59.122 41.667 0.00 0.00 34.72 3.91
804 806 4.848357 ACTGTTTGCCTCTAATGTAGCAT 58.152 39.130 0.00 0.00 34.72 3.79
805 807 4.286297 ACTGTTTGCCTCTAATGTAGCA 57.714 40.909 0.00 0.00 0.00 3.49
806 808 5.875359 AGTAACTGTTTGCCTCTAATGTAGC 59.125 40.000 0.00 0.00 0.00 3.58
807 809 6.313905 CCAGTAACTGTTTGCCTCTAATGTAG 59.686 42.308 0.00 0.00 0.00 2.74
808 810 6.170506 CCAGTAACTGTTTGCCTCTAATGTA 58.829 40.000 0.00 0.00 0.00 2.29
809 811 5.003804 CCAGTAACTGTTTGCCTCTAATGT 58.996 41.667 0.00 0.00 0.00 2.71
810 812 5.003804 ACCAGTAACTGTTTGCCTCTAATG 58.996 41.667 0.00 0.00 0.00 1.90
811 813 5.242795 ACCAGTAACTGTTTGCCTCTAAT 57.757 39.130 0.00 0.00 0.00 1.73
812 814 4.699925 ACCAGTAACTGTTTGCCTCTAA 57.300 40.909 0.00 0.00 0.00 2.10
813 815 4.836736 AGTACCAGTAACTGTTTGCCTCTA 59.163 41.667 0.00 0.00 0.00 2.43
814 816 3.646637 AGTACCAGTAACTGTTTGCCTCT 59.353 43.478 0.00 0.00 0.00 3.69
815 817 3.995048 GAGTACCAGTAACTGTTTGCCTC 59.005 47.826 0.00 0.00 0.00 4.70
816 818 3.244457 GGAGTACCAGTAACTGTTTGCCT 60.244 47.826 0.00 0.00 35.97 4.75
817 819 3.072211 GGAGTACCAGTAACTGTTTGCC 58.928 50.000 0.00 0.00 35.97 4.52
818 820 3.735591 TGGAGTACCAGTAACTGTTTGC 58.264 45.455 0.00 0.00 41.77 3.68
819 821 4.957296 AGTGGAGTACCAGTAACTGTTTG 58.043 43.478 0.00 0.00 46.76 2.93
830 832 5.733620 AGAACGAAAATAGTGGAGTACCA 57.266 39.130 0.00 0.00 44.76 3.25
831 833 7.430992 AAAAGAACGAAAATAGTGGAGTACC 57.569 36.000 0.00 0.00 0.00 3.34
832 834 8.013947 GGAAAAAGAACGAAAATAGTGGAGTAC 58.986 37.037 0.00 0.00 0.00 2.73
833 835 7.716123 TGGAAAAAGAACGAAAATAGTGGAGTA 59.284 33.333 0.00 0.00 0.00 2.59
834 836 6.544564 TGGAAAAAGAACGAAAATAGTGGAGT 59.455 34.615 0.00 0.00 0.00 3.85
835 837 6.966021 TGGAAAAAGAACGAAAATAGTGGAG 58.034 36.000 0.00 0.00 0.00 3.86
836 838 6.945938 TGGAAAAAGAACGAAAATAGTGGA 57.054 33.333 0.00 0.00 0.00 4.02
837 839 6.141685 CGTTGGAAAAAGAACGAAAATAGTGG 59.858 38.462 0.00 0.00 46.19 4.00
838 840 7.077785 CGTTGGAAAAAGAACGAAAATAGTG 57.922 36.000 0.00 0.00 46.19 2.74
847 849 2.349532 GGCTCTCGTTGGAAAAAGAACG 60.350 50.000 0.00 0.00 44.97 3.95
848 850 2.616842 TGGCTCTCGTTGGAAAAAGAAC 59.383 45.455 0.00 0.00 0.00 3.01
849 851 2.616842 GTGGCTCTCGTTGGAAAAAGAA 59.383 45.455 0.00 0.00 0.00 2.52
850 852 2.218603 GTGGCTCTCGTTGGAAAAAGA 58.781 47.619 0.00 0.00 0.00 2.52
851 853 1.946768 TGTGGCTCTCGTTGGAAAAAG 59.053 47.619 0.00 0.00 0.00 2.27
852 854 2.045561 TGTGGCTCTCGTTGGAAAAA 57.954 45.000 0.00 0.00 0.00 1.94
853 855 1.879380 CATGTGGCTCTCGTTGGAAAA 59.121 47.619 0.00 0.00 0.00 2.29
854 856 1.522668 CATGTGGCTCTCGTTGGAAA 58.477 50.000 0.00 0.00 0.00 3.13
855 857 0.955428 GCATGTGGCTCTCGTTGGAA 60.955 55.000 0.00 0.00 40.25 3.53
856 858 1.375908 GCATGTGGCTCTCGTTGGA 60.376 57.895 0.00 0.00 40.25 3.53
857 859 1.642037 CTGCATGTGGCTCTCGTTGG 61.642 60.000 0.00 0.00 45.15 3.77
858 860 0.671472 TCTGCATGTGGCTCTCGTTG 60.671 55.000 0.00 0.00 45.15 4.10
859 861 0.035317 TTCTGCATGTGGCTCTCGTT 59.965 50.000 0.00 0.00 45.15 3.85
860 862 0.671781 GTTCTGCATGTGGCTCTCGT 60.672 55.000 0.00 0.00 45.15 4.18
861 863 0.390866 AGTTCTGCATGTGGCTCTCG 60.391 55.000 0.00 0.00 45.15 4.04
862 864 1.085091 CAGTTCTGCATGTGGCTCTC 58.915 55.000 0.00 0.00 45.15 3.20
863 865 0.959372 GCAGTTCTGCATGTGGCTCT 60.959 55.000 18.26 0.00 45.15 4.09
864 866 0.959372 AGCAGTTCTGCATGTGGCTC 60.959 55.000 23.69 0.00 45.15 4.70
865 867 0.959372 GAGCAGTTCTGCATGTGGCT 60.959 55.000 23.69 4.16 45.15 4.75
866 868 0.959372 AGAGCAGTTCTGCATGTGGC 60.959 55.000 23.69 8.12 45.13 5.01
867 869 2.277969 CTAGAGCAGTTCTGCATGTGG 58.722 52.381 23.69 8.33 36.61 4.17
868 870 2.093816 TCCTAGAGCAGTTCTGCATGTG 60.094 50.000 23.69 12.24 36.61 3.21
869 871 2.182827 TCCTAGAGCAGTTCTGCATGT 58.817 47.619 23.69 11.72 36.61 3.21
870 872 2.975732 TCCTAGAGCAGTTCTGCATG 57.024 50.000 23.69 11.67 36.61 4.06
871 873 4.080695 TCAATTCCTAGAGCAGTTCTGCAT 60.081 41.667 23.69 15.17 36.61 3.96
872 874 3.261643 TCAATTCCTAGAGCAGTTCTGCA 59.738 43.478 23.69 5.53 36.61 4.41
873 875 3.866651 TCAATTCCTAGAGCAGTTCTGC 58.133 45.455 15.88 15.88 36.61 4.26
874 876 4.869297 CACTCAATTCCTAGAGCAGTTCTG 59.131 45.833 0.00 0.00 36.61 3.02
875 877 4.622695 GCACTCAATTCCTAGAGCAGTTCT 60.623 45.833 0.00 0.00 40.06 3.01
876 878 3.620821 GCACTCAATTCCTAGAGCAGTTC 59.379 47.826 0.00 0.00 35.28 3.01
877 879 3.262915 AGCACTCAATTCCTAGAGCAGTT 59.737 43.478 0.00 0.00 35.28 3.16
878 880 2.836981 AGCACTCAATTCCTAGAGCAGT 59.163 45.455 0.00 0.00 35.28 4.40
879 881 3.118847 TGAGCACTCAATTCCTAGAGCAG 60.119 47.826 0.00 0.00 36.53 4.24
880 882 2.833943 TGAGCACTCAATTCCTAGAGCA 59.166 45.455 0.00 0.00 36.53 4.26
881 883 3.194062 GTGAGCACTCAATTCCTAGAGC 58.806 50.000 1.05 0.00 41.85 4.09
882 884 3.196469 TGGTGAGCACTCAATTCCTAGAG 59.804 47.826 1.05 0.00 41.85 2.43
883 885 3.173151 TGGTGAGCACTCAATTCCTAGA 58.827 45.455 1.05 0.00 41.85 2.43
884 886 3.616956 TGGTGAGCACTCAATTCCTAG 57.383 47.619 1.05 0.00 41.85 3.02
885 887 4.365514 TTTGGTGAGCACTCAATTCCTA 57.634 40.909 1.05 0.00 41.85 2.94
886 888 2.957402 TTGGTGAGCACTCAATTCCT 57.043 45.000 1.05 0.00 41.85 3.36
887 889 3.068024 TGTTTTGGTGAGCACTCAATTCC 59.932 43.478 1.05 0.48 41.85 3.01
888 890 4.305989 TGTTTTGGTGAGCACTCAATTC 57.694 40.909 1.05 0.00 41.85 2.17
889 891 4.734398 TTGTTTTGGTGAGCACTCAATT 57.266 36.364 1.05 0.00 41.85 2.32
890 892 4.734398 TTTGTTTTGGTGAGCACTCAAT 57.266 36.364 1.05 0.00 41.85 2.57
891 893 4.241681 GTTTTGTTTTGGTGAGCACTCAA 58.758 39.130 1.05 1.23 41.85 3.02
892 894 3.256879 TGTTTTGTTTTGGTGAGCACTCA 59.743 39.130 0.00 0.00 37.24 3.41
893 895 3.843999 TGTTTTGTTTTGGTGAGCACTC 58.156 40.909 0.16 0.00 0.00 3.51
894 896 3.258123 ACTGTTTTGTTTTGGTGAGCACT 59.742 39.130 0.16 0.00 0.00 4.40
895 897 3.584834 ACTGTTTTGTTTTGGTGAGCAC 58.415 40.909 0.00 0.00 0.00 4.40
896 898 3.951775 ACTGTTTTGTTTTGGTGAGCA 57.048 38.095 0.00 0.00 0.00 4.26
897 899 3.993736 ACAACTGTTTTGTTTTGGTGAGC 59.006 39.130 0.00 0.00 0.00 4.26
898 900 4.388469 CCACAACTGTTTTGTTTTGGTGAG 59.612 41.667 6.00 0.00 40.77 3.51
899 901 4.310769 CCACAACTGTTTTGTTTTGGTGA 58.689 39.130 6.00 0.00 40.77 4.02
900 902 3.120373 GCCACAACTGTTTTGTTTTGGTG 60.120 43.478 12.26 2.02 44.89 4.17
901 903 3.070748 GCCACAACTGTTTTGTTTTGGT 58.929 40.909 12.26 0.00 44.89 3.67
902 904 3.333804 AGCCACAACTGTTTTGTTTTGG 58.666 40.909 6.00 7.86 45.49 3.28
903 905 4.091800 CAGAGCCACAACTGTTTTGTTTTG 59.908 41.667 6.00 0.00 0.00 2.44
904 906 4.244862 CAGAGCCACAACTGTTTTGTTTT 58.755 39.130 6.00 0.00 0.00 2.43
905 907 3.368323 CCAGAGCCACAACTGTTTTGTTT 60.368 43.478 6.00 0.00 32.93 2.83
906 908 2.166254 CCAGAGCCACAACTGTTTTGTT 59.834 45.455 6.00 0.00 32.93 2.83
907 909 1.750778 CCAGAGCCACAACTGTTTTGT 59.249 47.619 6.00 0.00 32.93 2.83
908 910 2.023673 TCCAGAGCCACAACTGTTTTG 58.976 47.619 0.00 0.00 32.93 2.44
909 911 2.024414 GTCCAGAGCCACAACTGTTTT 58.976 47.619 0.00 0.00 32.93 2.43
910 912 1.680338 GTCCAGAGCCACAACTGTTT 58.320 50.000 0.00 0.00 32.93 2.83
911 913 0.532862 CGTCCAGAGCCACAACTGTT 60.533 55.000 0.00 0.00 32.93 3.16
912 914 1.069765 CGTCCAGAGCCACAACTGT 59.930 57.895 0.00 0.00 32.93 3.55
913 915 0.532862 AACGTCCAGAGCCACAACTG 60.533 55.000 0.00 0.00 0.00 3.16
914 916 0.180406 AAACGTCCAGAGCCACAACT 59.820 50.000 0.00 0.00 0.00 3.16
915 917 0.586802 GAAACGTCCAGAGCCACAAC 59.413 55.000 0.00 0.00 0.00 3.32
916 918 0.878523 CGAAACGTCCAGAGCCACAA 60.879 55.000 0.00 0.00 0.00 3.33
917 919 1.300620 CGAAACGTCCAGAGCCACA 60.301 57.895 0.00 0.00 0.00 4.17
918 920 1.300697 ACGAAACGTCCAGAGCCAC 60.301 57.895 0.00 0.00 33.69 5.01
919 921 3.134879 ACGAAACGTCCAGAGCCA 58.865 55.556 0.00 0.00 33.69 4.75
928 930 1.135721 GCTATACCCAGGACGAAACGT 59.864 52.381 0.00 0.00 45.10 3.99
929 931 1.407979 AGCTATACCCAGGACGAAACG 59.592 52.381 0.00 0.00 0.00 3.60
930 932 3.552478 GCTAGCTATACCCAGGACGAAAC 60.552 52.174 7.70 0.00 0.00 2.78
931 933 2.626743 GCTAGCTATACCCAGGACGAAA 59.373 50.000 7.70 0.00 0.00 3.46
932 934 2.236766 GCTAGCTATACCCAGGACGAA 58.763 52.381 7.70 0.00 0.00 3.85
933 935 1.547223 GGCTAGCTATACCCAGGACGA 60.547 57.143 15.72 0.00 0.00 4.20
934 936 0.889306 GGCTAGCTATACCCAGGACG 59.111 60.000 15.72 0.00 0.00 4.79
935 937 1.268066 GGGCTAGCTATACCCAGGAC 58.732 60.000 21.72 0.00 43.64 3.85
936 938 0.251653 CGGGCTAGCTATACCCAGGA 60.252 60.000 24.58 0.00 44.49 3.86
937 939 0.251653 TCGGGCTAGCTATACCCAGG 60.252 60.000 24.58 13.66 44.49 4.45
938 940 0.889306 GTCGGGCTAGCTATACCCAG 59.111 60.000 24.58 18.52 44.49 4.45
939 941 0.186630 TGTCGGGCTAGCTATACCCA 59.813 55.000 24.58 13.31 44.49 4.51
940 942 0.889306 CTGTCGGGCTAGCTATACCC 59.111 60.000 15.72 18.23 40.51 3.69
941 943 0.244178 GCTGTCGGGCTAGCTATACC 59.756 60.000 15.72 6.16 36.99 2.73
942 944 3.796667 GCTGTCGGGCTAGCTATAC 57.203 57.895 15.72 10.42 36.99 1.47
947 949 2.317149 AATGGAGCTGTCGGGCTAGC 62.317 60.000 6.04 6.04 43.20 3.42
948 950 1.040646 TAATGGAGCTGTCGGGCTAG 58.959 55.000 0.00 0.00 43.20 3.42
949 951 1.717032 ATAATGGAGCTGTCGGGCTA 58.283 50.000 0.00 0.00 43.20 3.93
950 952 0.839946 AATAATGGAGCTGTCGGGCT 59.160 50.000 0.00 0.00 46.11 5.19
951 953 1.604278 GAAATAATGGAGCTGTCGGGC 59.396 52.381 0.00 0.00 0.00 6.13
952 954 2.158755 AGGAAATAATGGAGCTGTCGGG 60.159 50.000 0.00 0.00 0.00 5.14
953 955 3.199880 AGGAAATAATGGAGCTGTCGG 57.800 47.619 0.00 0.00 0.00 4.79
954 956 4.035675 GGAAAGGAAATAATGGAGCTGTCG 59.964 45.833 0.00 0.00 0.00 4.35
955 957 5.196695 AGGAAAGGAAATAATGGAGCTGTC 58.803 41.667 0.00 0.00 0.00 3.51
956 958 5.196695 GAGGAAAGGAAATAATGGAGCTGT 58.803 41.667 0.00 0.00 0.00 4.40
957 959 4.582240 GGAGGAAAGGAAATAATGGAGCTG 59.418 45.833 0.00 0.00 0.00 4.24
958 960 4.230502 TGGAGGAAAGGAAATAATGGAGCT 59.769 41.667 0.00 0.00 0.00 4.09
959 961 4.536765 TGGAGGAAAGGAAATAATGGAGC 58.463 43.478 0.00 0.00 0.00 4.70
960 962 6.608922 AGATGGAGGAAAGGAAATAATGGAG 58.391 40.000 0.00 0.00 0.00 3.86
961 963 6.596869 AGATGGAGGAAAGGAAATAATGGA 57.403 37.500 0.00 0.00 0.00 3.41
962 964 6.717084 GGTAGATGGAGGAAAGGAAATAATGG 59.283 42.308 0.00 0.00 0.00 3.16
963 965 6.717084 GGGTAGATGGAGGAAAGGAAATAATG 59.283 42.308 0.00 0.00 0.00 1.90
964 966 6.392842 TGGGTAGATGGAGGAAAGGAAATAAT 59.607 38.462 0.00 0.00 0.00 1.28
965 967 5.734140 TGGGTAGATGGAGGAAAGGAAATAA 59.266 40.000 0.00 0.00 0.00 1.40
966 968 5.293643 TGGGTAGATGGAGGAAAGGAAATA 58.706 41.667 0.00 0.00 0.00 1.40
967 969 4.119155 TGGGTAGATGGAGGAAAGGAAAT 58.881 43.478 0.00 0.00 0.00 2.17
968 970 3.537337 TGGGTAGATGGAGGAAAGGAAA 58.463 45.455 0.00 0.00 0.00 3.13
969 971 3.214694 TGGGTAGATGGAGGAAAGGAA 57.785 47.619 0.00 0.00 0.00 3.36
970 972 2.961536 TGGGTAGATGGAGGAAAGGA 57.038 50.000 0.00 0.00 0.00 3.36
971 973 3.825328 CAATGGGTAGATGGAGGAAAGG 58.175 50.000 0.00 0.00 0.00 3.11
972 974 3.217626 GCAATGGGTAGATGGAGGAAAG 58.782 50.000 0.00 0.00 0.00 2.62
973 975 2.421388 CGCAATGGGTAGATGGAGGAAA 60.421 50.000 0.00 0.00 0.00 3.13
974 976 1.140852 CGCAATGGGTAGATGGAGGAA 59.859 52.381 0.00 0.00 0.00 3.36
975 977 0.758734 CGCAATGGGTAGATGGAGGA 59.241 55.000 0.00 0.00 0.00 3.71
976 978 0.758734 TCGCAATGGGTAGATGGAGG 59.241 55.000 0.00 0.00 0.00 4.30
997 1000 1.316651 GCTGCTCCCATTTCCATCTC 58.683 55.000 0.00 0.00 0.00 2.75
1050 1063 4.572571 AACGCCAGCCACGGGAAA 62.573 61.111 0.00 0.00 34.00 3.13
1652 2110 2.290287 TGTATGGTGAGGCGGCTGT 61.290 57.895 19.63 0.00 0.00 4.40
2532 4179 3.006217 CGCATGATGTATCAGAGGAGGAA 59.994 47.826 0.00 0.00 40.64 3.36
2872 4550 1.581447 GGAAAAGCTTGGACTGGCG 59.419 57.895 0.00 0.00 0.00 5.69
2916 4595 3.067601 GGGAAAGCTTCAACCTCGAAAAA 59.932 43.478 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.