Multiple sequence alignment - TraesCS1B01G335800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G335800 chr1B 100.000 3605 0 0 1 3605 562487701 562491305 0.000000e+00 6658
1 TraesCS1B01G335800 chr1B 82.900 1655 260 17 1026 2671 562459408 562457768 0.000000e+00 1467
2 TraesCS1B01G335800 chr1B 82.729 1656 260 17 1026 2671 562469926 562468287 0.000000e+00 1450
3 TraesCS1B01G335800 chr1B 82.912 1621 244 23 1058 2673 562482000 562480408 0.000000e+00 1428
4 TraesCS1B01G335800 chr1B 83.248 1361 213 12 1321 2673 562485663 562484310 0.000000e+00 1236
5 TraesCS1B01G335800 chr1B 96.154 104 2 1 902 1003 562470125 562470022 6.190000e-38 169
6 TraesCS1B01G335800 chr1B 90.826 109 3 2 902 1003 562459693 562459585 4.850000e-29 139
7 TraesCS1B01G335800 chr1D 90.333 2524 154 21 1026 3494 416127018 416129506 0.000000e+00 3227
8 TraesCS1B01G335800 chr1D 82.989 1693 242 36 1026 2700 416119533 416117869 0.000000e+00 1489
9 TraesCS1B01G335800 chr1D 82.883 1630 245 21 1097 2719 416114968 416113366 0.000000e+00 1434
10 TraesCS1B01G335800 chr1D 86.499 437 42 12 360 795 416126303 416126723 7.050000e-127 464
11 TraesCS1B01G335800 chr1D 80.242 496 82 12 1291 1776 416345724 416346213 3.420000e-95 359
12 TraesCS1B01G335800 chr1D 80.841 428 51 10 3139 3535 416214429 416214856 1.260000e-79 307
13 TraesCS1B01G335800 chr1D 79.597 397 43 13 1 362 416123207 416123600 2.150000e-62 250
14 TraesCS1B01G335800 chr1A 93.868 1859 98 7 1027 2879 513660683 513662531 0.000000e+00 2787
15 TraesCS1B01G335800 chr1A 82.930 1693 249 32 1026 2700 513653913 513652243 0.000000e+00 1489
16 TraesCS1B01G335800 chr1A 80.942 1805 297 34 1097 2885 513649764 513647991 0.000000e+00 1384
17 TraesCS1B01G335800 chr1A 84.130 1172 167 13 1501 2664 513636505 513635345 0.000000e+00 1116
18 TraesCS1B01G335800 chr1A 95.506 89 4 0 216 304 513659752 513659840 3.750000e-30 143
19 TraesCS1B01G335800 chrUn 81.761 1272 203 19 1017 2280 939885 941135 0.000000e+00 1037
20 TraesCS1B01G335800 chr4A 79.075 411 49 20 2480 2881 578973867 578974249 7.730000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G335800 chr1B 562487701 562491305 3604 False 6658.000000 6658 100.000000 1 3605 1 chr1B.!!$F1 3604
1 TraesCS1B01G335800 chr1B 562480408 562485663 5255 True 1332.000000 1428 83.080000 1058 2673 2 chr1B.!!$R3 1615
2 TraesCS1B01G335800 chr1B 562468287 562470125 1838 True 809.500000 1450 89.441500 902 2671 2 chr1B.!!$R2 1769
3 TraesCS1B01G335800 chr1B 562457768 562459693 1925 True 803.000000 1467 86.863000 902 2671 2 chr1B.!!$R1 1769
4 TraesCS1B01G335800 chr1D 416113366 416119533 6167 True 1461.500000 1489 82.936000 1026 2719 2 chr1D.!!$R1 1693
5 TraesCS1B01G335800 chr1D 416123207 416129506 6299 False 1313.666667 3227 85.476333 1 3494 3 chr1D.!!$F3 3493
6 TraesCS1B01G335800 chr1A 513659752 513662531 2779 False 1465.000000 2787 94.687000 216 2879 2 chr1A.!!$F1 2663
7 TraesCS1B01G335800 chr1A 513647991 513653913 5922 True 1436.500000 1489 81.936000 1026 2885 2 chr1A.!!$R2 1859
8 TraesCS1B01G335800 chr1A 513635345 513636505 1160 True 1116.000000 1116 84.130000 1501 2664 1 chr1A.!!$R1 1163
9 TraesCS1B01G335800 chrUn 939885 941135 1250 False 1037.000000 1037 81.761000 1017 2280 1 chrUn.!!$F1 1263

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 3178 0.031314 CGCGGATCTCAGTATGCAGT 59.969 55.0 0.00 0.00 34.76 4.40 F
483 3223 0.322456 AAGCTTCGCCATGGCAACTA 60.322 50.0 34.93 15.21 42.06 2.24 F
1569 9341 0.031585 GTGGATGCGACCGTATGCTA 59.968 55.0 12.22 0.00 30.77 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1394 9166 0.041833 TGAGCTGCTAACCTCCTCCT 59.958 55.0 0.15 0.0 0.00 3.69 R
2024 9802 0.101579 GAGGTAGCTGAACTCCTCGC 59.898 60.0 0.00 0.0 34.85 5.03 R
3502 11338 0.030235 TCGACAACTGACGTGGAGTG 59.970 55.0 0.00 0.0 34.98 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.669999 GGTTGATGAGGTGGCATGCC 61.670 60.000 30.54 30.54 0.00 4.40
23 24 2.152602 TTGATGAGGTGGCATGCCCA 62.153 55.000 33.44 23.55 42.79 5.36
28 29 4.408821 GGTGGCATGCCCAGTCGA 62.409 66.667 33.44 11.50 46.54 4.20
49 50 4.202151 CGACATTGACTATGATCAGGACCA 60.202 45.833 0.09 0.00 37.69 4.02
53 54 5.762179 TTGACTATGATCAGGACCAGTTT 57.238 39.130 0.09 0.00 0.00 2.66
57 58 2.859165 TGATCAGGACCAGTTTGACC 57.141 50.000 0.00 0.00 0.00 4.02
61 62 0.320771 CAGGACCAGTTTGACCGAGG 60.321 60.000 0.00 0.00 0.00 4.63
62 63 1.003718 GGACCAGTTTGACCGAGGG 60.004 63.158 0.00 0.00 0.00 4.30
63 64 1.477685 GGACCAGTTTGACCGAGGGA 61.478 60.000 0.00 0.00 0.00 4.20
67 68 2.158519 ACCAGTTTGACCGAGGGAAAAT 60.159 45.455 0.00 0.00 0.00 1.82
71 72 3.821033 AGTTTGACCGAGGGAAAATCAAG 59.179 43.478 0.00 0.00 31.34 3.02
73 74 3.053831 TGACCGAGGGAAAATCAAGAC 57.946 47.619 0.00 0.00 0.00 3.01
87 88 5.674933 AATCAAGACGAGGTTTCAAAGTC 57.325 39.130 0.00 0.00 0.00 3.01
96 97 2.024369 AGGTTTCAAAGTCCAGGGTTGT 60.024 45.455 0.00 0.00 0.00 3.32
106 107 6.659745 AAGTCCAGGGTTGTAAATTAAACC 57.340 37.500 8.45 8.45 44.31 3.27
113 114 3.750652 GGTTGTAAATTAAACCGACCGGA 59.249 43.478 16.07 0.00 36.75 5.14
121 122 7.920160 AAATTAAACCGACCGGATAGTTTAA 57.080 32.000 26.70 26.70 44.34 1.52
136 137 8.557029 CGGATAGTTTAAGGTTGAAATATGGAC 58.443 37.037 0.00 0.00 0.00 4.02
144 145 6.029346 AGGTTGAAATATGGACTTTTGCAG 57.971 37.500 0.00 0.00 0.00 4.41
149 150 7.288810 TGAAATATGGACTTTTGCAGAAGTT 57.711 32.000 22.18 10.47 39.84 2.66
152 153 9.691362 GAAATATGGACTTTTGCAGAAGTTTTA 57.309 29.630 22.18 14.45 39.84 1.52
154 155 9.643693 AATATGGACTTTTGCAGAAGTTTTATG 57.356 29.630 22.18 0.00 39.84 1.90
155 156 5.288804 TGGACTTTTGCAGAAGTTTTATGC 58.711 37.500 22.18 9.40 39.84 3.14
156 157 5.068987 TGGACTTTTGCAGAAGTTTTATGCT 59.931 36.000 22.18 0.00 39.84 3.79
157 158 5.985530 GGACTTTTGCAGAAGTTTTATGCTT 59.014 36.000 22.18 0.00 39.84 3.91
162 163 6.586868 TTGCAGAAGTTTTATGCTTTTGTG 57.413 33.333 9.46 0.00 40.62 3.33
164 165 5.519566 TGCAGAAGTTTTATGCTTTTGTGTG 59.480 36.000 9.46 0.00 40.62 3.82
165 166 5.519927 GCAGAAGTTTTATGCTTTTGTGTGT 59.480 36.000 1.50 0.00 37.00 3.72
166 167 6.695278 GCAGAAGTTTTATGCTTTTGTGTGTA 59.305 34.615 1.50 0.00 37.00 2.90
169 170 8.413229 AGAAGTTTTATGCTTTTGTGTGTATGT 58.587 29.630 0.00 0.00 0.00 2.29
171 172 9.677567 AAGTTTTATGCTTTTGTGTGTATGTAG 57.322 29.630 0.00 0.00 0.00 2.74
307 343 5.509716 TCAGTCGTGTGACCGAAATATAT 57.490 39.130 0.00 0.00 46.74 0.86
314 350 3.070446 TGTGACCGAAATATATTCGCCCT 59.930 43.478 0.00 0.00 40.30 5.19
338 374 3.749665 TTTTGGCAGCTGCAACTAATT 57.250 38.095 37.63 0.00 44.36 1.40
344 380 3.552684 GGCAGCTGCAACTAATTTTCACA 60.553 43.478 37.63 0.00 44.36 3.58
380 3120 1.644337 TGCTACCAAGGGACTCTCCTA 59.356 52.381 0.00 0.00 38.49 2.94
383 3123 0.413832 ACCAAGGGACTCTCCTAGCA 59.586 55.000 0.00 0.00 38.49 3.49
401 3141 1.610673 ACCGCACCTCTCTGTCCAT 60.611 57.895 0.00 0.00 0.00 3.41
430 3170 2.415010 CCTCACCGCGGATCTCAG 59.585 66.667 35.90 18.14 0.00 3.35
438 3178 0.031314 CGCGGATCTCAGTATGCAGT 59.969 55.000 0.00 0.00 34.76 4.40
448 3188 4.449568 TATGCAGTGCGCCGCAGA 62.450 61.111 14.23 6.49 42.37 4.26
483 3223 0.322456 AAGCTTCGCCATGGCAACTA 60.322 50.000 34.93 15.21 42.06 2.24
495 3235 1.985159 TGGCAACTATGTCCTGTTCCT 59.015 47.619 0.00 0.00 37.61 3.36
502 3243 2.969628 ATGTCCTGTTCCTGACGATC 57.030 50.000 0.00 0.00 34.18 3.69
509 3250 1.007336 GTTCCTGACGATCGTGCGTT 61.007 55.000 28.12 0.00 45.72 4.84
537 3278 2.029844 GTCTCCACGAAGGCAGCAC 61.030 63.158 0.00 0.00 37.29 4.40
540 3281 2.664851 CCACGAAGGCAGCACGAA 60.665 61.111 11.69 0.00 0.00 3.85
543 3284 3.793144 CGAAGGCAGCACGAAGGC 61.793 66.667 0.00 0.00 0.00 4.35
545 3286 4.314440 AAGGCAGCACGAAGGCGA 62.314 61.111 0.00 0.00 41.64 5.54
648 3396 1.790387 GTCAATCAGGTCAGCGTGC 59.210 57.895 0.00 0.00 0.00 5.34
653 3401 2.104572 ATCAGGTCAGCGTGCTGTGT 62.105 55.000 20.33 4.87 43.96 3.72
721 3469 6.035650 TCACGTTTGTTCTCTCTTGTTGTTAG 59.964 38.462 0.00 0.00 0.00 2.34
724 3472 7.009907 ACGTTTGTTCTCTCTTGTTGTTAGTAC 59.990 37.037 0.00 0.00 0.00 2.73
767 3642 2.821969 AGTTGCTGCCTGATTTGGTTAG 59.178 45.455 0.00 0.00 0.00 2.34
769 3644 3.712016 TGCTGCCTGATTTGGTTAGTA 57.288 42.857 0.00 0.00 0.00 1.82
774 3649 2.351726 GCCTGATTTGGTTAGTAGCACG 59.648 50.000 0.00 0.00 0.00 5.34
778 3653 5.234329 CCTGATTTGGTTAGTAGCACGTATG 59.766 44.000 0.00 0.00 0.00 2.39
798 3673 3.959573 GCTGGTTAGCTAGCAATCAAG 57.040 47.619 18.83 9.93 46.72 3.02
799 3674 2.615912 GCTGGTTAGCTAGCAATCAAGG 59.384 50.000 18.83 6.32 46.72 3.61
800 3675 3.682718 GCTGGTTAGCTAGCAATCAAGGA 60.683 47.826 18.83 0.00 46.72 3.36
801 3676 4.712476 CTGGTTAGCTAGCAATCAAGGAT 58.288 43.478 18.83 0.00 33.04 3.24
802 3677 5.116084 TGGTTAGCTAGCAATCAAGGATT 57.884 39.130 18.83 0.00 31.86 3.01
803 3678 5.509498 TGGTTAGCTAGCAATCAAGGATTT 58.491 37.500 18.83 0.00 28.87 2.17
804 3679 6.658849 TGGTTAGCTAGCAATCAAGGATTTA 58.341 36.000 18.83 0.00 28.87 1.40
805 3680 7.116075 TGGTTAGCTAGCAATCAAGGATTTAA 58.884 34.615 18.83 0.00 28.87 1.52
806 3681 7.283127 TGGTTAGCTAGCAATCAAGGATTTAAG 59.717 37.037 18.83 0.00 28.87 1.85
807 3682 7.255277 GGTTAGCTAGCAATCAAGGATTTAAGG 60.255 40.741 18.83 0.00 28.87 2.69
808 3683 5.136105 AGCTAGCAATCAAGGATTTAAGGG 58.864 41.667 18.83 0.00 28.87 3.95
809 3684 4.261783 GCTAGCAATCAAGGATTTAAGGGC 60.262 45.833 10.63 0.00 28.87 5.19
810 3685 2.689983 AGCAATCAAGGATTTAAGGGCG 59.310 45.455 0.00 0.00 28.87 6.13
811 3686 2.427095 GCAATCAAGGATTTAAGGGCGT 59.573 45.455 0.00 0.00 28.87 5.68
812 3687 3.119137 GCAATCAAGGATTTAAGGGCGTT 60.119 43.478 0.00 0.00 28.87 4.84
813 3688 4.620567 GCAATCAAGGATTTAAGGGCGTTT 60.621 41.667 0.00 0.00 28.87 3.60
814 3689 4.718940 ATCAAGGATTTAAGGGCGTTTG 57.281 40.909 0.00 0.00 0.00 2.93
815 3690 2.823154 TCAAGGATTTAAGGGCGTTTGG 59.177 45.455 0.00 0.00 0.00 3.28
816 3691 2.560981 CAAGGATTTAAGGGCGTTTGGT 59.439 45.455 0.00 0.00 0.00 3.67
817 3692 3.724732 AGGATTTAAGGGCGTTTGGTA 57.275 42.857 0.00 0.00 0.00 3.25
818 3693 4.245251 AGGATTTAAGGGCGTTTGGTAT 57.755 40.909 0.00 0.00 0.00 2.73
819 3694 3.951680 AGGATTTAAGGGCGTTTGGTATG 59.048 43.478 0.00 0.00 0.00 2.39
820 3695 3.490249 GGATTTAAGGGCGTTTGGTATGC 60.490 47.826 0.00 0.00 38.08 3.14
826 3701 2.188912 GCGTTTGGTATGCCATGGT 58.811 52.632 14.67 0.00 45.56 3.55
827 3702 1.384525 GCGTTTGGTATGCCATGGTA 58.615 50.000 14.67 9.89 45.56 3.25
828 3703 1.953686 GCGTTTGGTATGCCATGGTAT 59.046 47.619 19.86 19.86 45.56 2.73
829 3704 2.360801 GCGTTTGGTATGCCATGGTATT 59.639 45.455 21.16 5.40 45.56 1.89
830 3705 3.181480 GCGTTTGGTATGCCATGGTATTT 60.181 43.478 21.16 0.30 45.56 1.40
831 3706 4.679372 GCGTTTGGTATGCCATGGTATTTT 60.679 41.667 21.16 0.00 45.56 1.82
832 3707 5.040635 CGTTTGGTATGCCATGGTATTTTC 58.959 41.667 21.16 11.34 45.56 2.29
833 3708 5.393569 CGTTTGGTATGCCATGGTATTTTCA 60.394 40.000 21.16 13.23 45.56 2.69
834 3709 6.581712 GTTTGGTATGCCATGGTATTTTCAT 58.418 36.000 21.16 12.51 45.56 2.57
835 3710 6.805016 TTGGTATGCCATGGTATTTTCATT 57.195 33.333 21.16 0.00 45.56 2.57
836 3711 6.805016 TGGTATGCCATGGTATTTTCATTT 57.195 33.333 21.16 0.00 40.46 2.32
837 3712 6.815089 TGGTATGCCATGGTATTTTCATTTC 58.185 36.000 21.16 7.21 40.46 2.17
838 3713 6.610830 TGGTATGCCATGGTATTTTCATTTCT 59.389 34.615 21.16 0.00 40.46 2.52
839 3714 7.125507 TGGTATGCCATGGTATTTTCATTTCTT 59.874 33.333 21.16 0.00 40.46 2.52
840 3715 8.637986 GGTATGCCATGGTATTTTCATTTCTTA 58.362 33.333 21.16 0.00 34.09 2.10
844 3719 9.420118 TGCCATGGTATTTTCATTTCTTATACT 57.580 29.630 14.67 0.00 0.00 2.12
882 3757 9.629878 TTATTTTTGAACAGAAACTAGTACCCA 57.370 29.630 0.00 0.00 0.00 4.51
883 3758 8.706322 ATTTTTGAACAGAAACTAGTACCCAT 57.294 30.769 0.00 0.00 0.00 4.00
884 3759 8.528044 TTTTTGAACAGAAACTAGTACCCATT 57.472 30.769 0.00 0.00 0.00 3.16
885 3760 8.528044 TTTTGAACAGAAACTAGTACCCATTT 57.472 30.769 0.00 0.00 0.00 2.32
886 3761 8.528044 TTTGAACAGAAACTAGTACCCATTTT 57.472 30.769 0.00 0.00 0.00 1.82
887 3762 9.629878 TTTGAACAGAAACTAGTACCCATTTTA 57.370 29.630 0.00 0.00 0.00 1.52
888 3763 9.629878 TTGAACAGAAACTAGTACCCATTTTAA 57.370 29.630 0.00 0.00 0.00 1.52
889 3764 9.280174 TGAACAGAAACTAGTACCCATTTTAAG 57.720 33.333 0.00 0.00 0.00 1.85
890 3765 9.281371 GAACAGAAACTAGTACCCATTTTAAGT 57.719 33.333 0.00 0.00 0.00 2.24
891 3766 8.617290 ACAGAAACTAGTACCCATTTTAAGTG 57.383 34.615 0.00 0.00 0.00 3.16
892 3767 8.215736 ACAGAAACTAGTACCCATTTTAAGTGT 58.784 33.333 0.00 0.00 0.00 3.55
893 3768 8.504005 CAGAAACTAGTACCCATTTTAAGTGTG 58.496 37.037 0.00 0.00 0.00 3.82
894 3769 6.812879 AACTAGTACCCATTTTAAGTGTGC 57.187 37.500 0.00 0.00 0.00 4.57
895 3770 5.871834 ACTAGTACCCATTTTAAGTGTGCA 58.128 37.500 0.00 0.00 0.00 4.57
896 3771 5.938125 ACTAGTACCCATTTTAAGTGTGCAG 59.062 40.000 0.00 0.00 0.00 4.41
897 3772 4.079253 AGTACCCATTTTAAGTGTGCAGG 58.921 43.478 0.00 0.00 0.00 4.85
898 3773 1.618343 ACCCATTTTAAGTGTGCAGGC 59.382 47.619 0.00 0.00 0.00 4.85
899 3774 1.066929 CCCATTTTAAGTGTGCAGGCC 60.067 52.381 0.00 0.00 0.00 5.19
900 3775 1.617850 CCATTTTAAGTGTGCAGGCCA 59.382 47.619 5.01 0.00 0.00 5.36
947 3824 1.558756 AGAGGAGCATGGTCAAGGAAG 59.441 52.381 25.18 0.00 0.00 3.46
957 3834 1.072331 GGTCAAGGAAGGTTGCTGAGA 59.928 52.381 0.00 0.00 0.00 3.27
1010 3892 3.458872 CATGGTGCATGGAGTACGT 57.541 52.632 0.00 0.00 38.11 3.57
1011 3893 1.290203 CATGGTGCATGGAGTACGTC 58.710 55.000 0.00 0.00 38.11 4.34
1052 4104 1.958902 CTCCTGCCCTCTGCTCTGTC 61.959 65.000 0.00 0.00 42.00 3.51
1084 4136 4.378149 GGTTAGTTAGCACTCTTTTTCGCC 60.378 45.833 0.00 0.00 34.06 5.54
1170 4223 2.952978 CTCCTACCTCGCAGACAAGTAT 59.047 50.000 0.00 0.00 0.00 2.12
1394 9166 2.583101 AGACAGAGACTAGTCCCATGGA 59.417 50.000 19.38 0.00 35.38 3.41
1395 9167 2.955660 GACAGAGACTAGTCCCATGGAG 59.044 54.545 19.38 4.77 29.39 3.86
1396 9168 2.315176 CAGAGACTAGTCCCATGGAGG 58.685 57.143 19.38 0.00 29.39 4.30
1397 9169 2.091610 CAGAGACTAGTCCCATGGAGGA 60.092 54.545 19.38 0.00 41.22 3.71
1398 9170 2.176798 AGAGACTAGTCCCATGGAGGAG 59.823 54.545 19.38 7.33 41.22 3.69
1399 9171 1.219213 AGACTAGTCCCATGGAGGAGG 59.781 57.143 19.38 2.83 41.22 4.30
1449 9221 3.803082 CGCACGGTTCATGGCAGG 61.803 66.667 0.00 0.00 0.00 4.85
1454 9226 1.077787 CGGTTCATGGCAGGGCTAA 60.078 57.895 0.00 0.00 0.00 3.09
1515 9287 0.832135 TGGAGAGCTTGGAGGACGTT 60.832 55.000 0.00 0.00 0.00 3.99
1520 9292 1.006571 GCTTGGAGGACGTTGTCGA 60.007 57.895 0.00 0.00 40.62 4.20
1524 9296 1.183030 TGGAGGACGTTGTCGATGGT 61.183 55.000 0.00 0.00 40.62 3.55
1569 9341 0.031585 GTGGATGCGACCGTATGCTA 59.968 55.000 12.22 0.00 30.77 3.49
1605 9377 5.872070 TGATGCGTATCTTTACAATGACACA 59.128 36.000 14.76 0.00 34.31 3.72
1899 9674 1.687628 CAGACGTCAACGAGAAGGAC 58.312 55.000 19.50 0.00 43.02 3.85
1924 9699 1.541233 CCGAGTTCTGCTCAACCTTGT 60.541 52.381 0.00 0.00 44.33 3.16
2024 9802 2.038952 TCTTCCTCAACACCCTGTCATG 59.961 50.000 0.00 0.00 0.00 3.07
2616 10394 3.347216 TGCTTTGTAAGGCCTTCTGATC 58.653 45.455 24.49 8.84 0.00 2.92
2673 10452 3.965694 TCTCTAGTACTCCCCAGTTCAC 58.034 50.000 0.00 0.00 33.62 3.18
2675 10454 4.017407 TCTCTAGTACTCCCCAGTTCACAT 60.017 45.833 0.00 0.00 33.62 3.21
2847 10658 6.101332 TGGAAGTCATGCATTTATGAAAAGC 58.899 36.000 0.00 0.00 38.69 3.51
2906 10717 6.942976 TGTCCATTAACTTAAACCTCTCGAT 58.057 36.000 0.00 0.00 0.00 3.59
2918 10729 4.143986 ACCTCTCGATGGGAAGAAATTC 57.856 45.455 10.24 0.00 0.00 2.17
2926 10737 5.534654 TCGATGGGAAGAAATTCTTGTTTGT 59.465 36.000 13.55 0.00 36.73 2.83
2928 10739 4.692228 TGGGAAGAAATTCTTGTTTGTGC 58.308 39.130 13.55 0.00 36.73 4.57
2942 10753 7.990917 TCTTGTTTGTGCACTCAAAATAACTA 58.009 30.769 19.41 6.94 38.71 2.24
2943 10754 8.462811 TCTTGTTTGTGCACTCAAAATAACTAA 58.537 29.630 19.41 0.00 38.71 2.24
2971 10782 4.862641 AAATATACCCAGGCAAGAGTGT 57.137 40.909 0.00 0.00 0.00 3.55
2972 10783 3.845781 ATATACCCAGGCAAGAGTGTG 57.154 47.619 0.00 0.00 0.00 3.82
2978 10789 1.678123 CCAGGCAAGAGTGTGGATGAG 60.678 57.143 0.00 0.00 31.04 2.90
2986 10797 5.355596 CAAGAGTGTGGATGAGGAATAGTC 58.644 45.833 0.00 0.00 0.00 2.59
2987 10798 3.964031 AGAGTGTGGATGAGGAATAGTCC 59.036 47.826 0.00 0.00 45.35 3.85
2988 10799 3.041946 AGTGTGGATGAGGAATAGTCCC 58.958 50.000 5.39 0.00 46.30 4.46
2991 10802 0.977395 GGATGAGGAATAGTCCCCGG 59.023 60.000 5.39 0.00 46.30 5.73
2992 10803 1.482553 GGATGAGGAATAGTCCCCGGA 60.483 57.143 0.73 0.00 46.30 5.14
2993 10804 1.896465 GATGAGGAATAGTCCCCGGAG 59.104 57.143 0.73 0.00 46.30 4.63
2999 10810 0.252197 AATAGTCCCCGGAGCAACAC 59.748 55.000 0.73 0.00 0.00 3.32
3013 10824 1.686052 GCAACACAGGGACCAAATCAA 59.314 47.619 0.00 0.00 0.00 2.57
3076 10887 0.755686 AGATGATTGTCGAGGGCCTC 59.244 55.000 24.06 24.06 0.00 4.70
3077 10888 0.465705 GATGATTGTCGAGGGCCTCA 59.534 55.000 31.69 16.84 0.00 3.86
3078 10889 0.911769 ATGATTGTCGAGGGCCTCAA 59.088 50.000 31.69 20.08 0.00 3.02
3093 10904 2.290641 GCCTCAAGAAGAAGCGAAACAA 59.709 45.455 0.00 0.00 0.00 2.83
3097 10908 6.080406 CCTCAAGAAGAAGCGAAACAAATAC 58.920 40.000 0.00 0.00 0.00 1.89
3104 10915 6.481954 AGAAGCGAAACAAATACGAATCTT 57.518 33.333 0.00 0.00 0.00 2.40
3110 10921 5.163854 CGAAACAAATACGAATCTTGAGGCT 60.164 40.000 0.00 0.00 0.00 4.58
3111 10922 6.575162 AAACAAATACGAATCTTGAGGCTT 57.425 33.333 0.00 0.00 0.00 4.35
3112 10923 5.551760 ACAAATACGAATCTTGAGGCTTG 57.448 39.130 0.00 0.00 0.00 4.01
3113 10924 5.003804 ACAAATACGAATCTTGAGGCTTGT 58.996 37.500 0.00 0.00 0.00 3.16
3114 10925 5.106555 ACAAATACGAATCTTGAGGCTTGTG 60.107 40.000 0.00 0.00 0.00 3.33
3115 10926 2.550830 ACGAATCTTGAGGCTTGTGT 57.449 45.000 0.00 0.00 0.00 3.72
3116 10927 2.851195 ACGAATCTTGAGGCTTGTGTT 58.149 42.857 0.00 0.00 0.00 3.32
3117 10928 2.549754 ACGAATCTTGAGGCTTGTGTTG 59.450 45.455 0.00 0.00 0.00 3.33
3118 10929 2.666619 CGAATCTTGAGGCTTGTGTTGC 60.667 50.000 0.00 0.00 0.00 4.17
3119 10930 0.877071 ATCTTGAGGCTTGTGTTGCG 59.123 50.000 0.00 0.00 0.00 4.85
3120 10931 1.165907 TCTTGAGGCTTGTGTTGCGG 61.166 55.000 0.00 0.00 0.00 5.69
3121 10932 2.737932 CTTGAGGCTTGTGTTGCGGC 62.738 60.000 0.00 0.00 0.00 6.53
3122 10933 3.286751 GAGGCTTGTGTTGCGGCA 61.287 61.111 0.00 0.00 0.00 5.69
3123 10934 2.598394 AGGCTTGTGTTGCGGCAT 60.598 55.556 2.28 0.00 0.00 4.40
3124 10935 2.126346 GGCTTGTGTTGCGGCATC 60.126 61.111 2.28 3.35 0.00 3.91
3125 10936 2.629656 GGCTTGTGTTGCGGCATCT 61.630 57.895 2.28 0.00 0.00 2.90
3126 10937 1.154150 GCTTGTGTTGCGGCATCTC 60.154 57.895 2.28 4.77 0.00 2.75
3127 10938 1.580845 GCTTGTGTTGCGGCATCTCT 61.581 55.000 2.28 0.00 0.00 3.10
3128 10939 0.445436 CTTGTGTTGCGGCATCTCTC 59.555 55.000 2.28 0.00 0.00 3.20
3129 10940 0.955428 TTGTGTTGCGGCATCTCTCC 60.955 55.000 2.28 0.00 0.00 3.71
3130 10941 1.375908 GTGTTGCGGCATCTCTCCA 60.376 57.895 2.28 0.00 0.00 3.86
3131 10942 1.375908 TGTTGCGGCATCTCTCCAC 60.376 57.895 2.28 0.00 0.00 4.02
3132 10943 1.375908 GTTGCGGCATCTCTCCACA 60.376 57.895 2.28 0.00 0.00 4.17
3133 10944 0.745845 GTTGCGGCATCTCTCCACAT 60.746 55.000 2.28 0.00 0.00 3.21
3134 10945 0.745486 TTGCGGCATCTCTCCACATG 60.745 55.000 2.28 0.00 0.00 3.21
3146 10957 1.112315 TCCACATGTGTTTGGGCCAC 61.112 55.000 23.79 0.00 33.25 5.01
3183 10994 0.177604 CCAAGAGCTGAGCTACCCAG 59.822 60.000 7.08 0.00 39.88 4.45
3186 10997 2.697751 CAAGAGCTGAGCTACCCAGTAT 59.302 50.000 7.08 0.00 39.88 2.12
3190 11001 2.101582 AGCTGAGCTACCCAGTATTTCG 59.898 50.000 4.49 0.00 36.99 3.46
3191 11002 2.474816 CTGAGCTACCCAGTATTTCGC 58.525 52.381 0.00 0.00 0.00 4.70
3202 11013 3.252215 CCAGTATTTCGCTTGAAACCACA 59.748 43.478 0.00 0.00 43.95 4.17
3204 11015 4.675114 CAGTATTTCGCTTGAAACCACAAC 59.325 41.667 0.00 0.00 43.95 3.32
3205 11016 3.791973 ATTTCGCTTGAAACCACAACA 57.208 38.095 0.00 0.00 43.95 3.33
3206 11017 3.577649 TTTCGCTTGAAACCACAACAA 57.422 38.095 0.00 0.00 36.69 2.83
3214 11033 2.011222 GAAACCACAACAACGTCCTCA 58.989 47.619 0.00 0.00 0.00 3.86
3215 11034 1.663695 AACCACAACAACGTCCTCAG 58.336 50.000 0.00 0.00 0.00 3.35
3229 11048 2.356382 GTCCTCAGAGATAGTCACCACG 59.644 54.545 0.00 0.00 0.00 4.94
3251 11070 0.741915 CTACCGGCAGAACTCCTCTC 59.258 60.000 0.00 0.00 29.07 3.20
3256 11075 1.107114 GGCAGAACTCCTCTCGATCA 58.893 55.000 0.00 0.00 29.07 2.92
3268 11087 3.455327 CTCTCGATCATGCATTGACTGT 58.545 45.455 0.00 0.00 37.11 3.55
3269 11088 4.500375 CCTCTCGATCATGCATTGACTGTA 60.500 45.833 0.00 0.00 37.11 2.74
3290 11125 2.814280 TCCTCAAACCTTCACTCGTC 57.186 50.000 0.00 0.00 0.00 4.20
3332 11168 2.424956 GCCATGAGAAACACCAAGATCC 59.575 50.000 0.00 0.00 0.00 3.36
3336 11172 4.437682 TGAGAAACACCAAGATCCACTT 57.562 40.909 0.00 0.00 39.70 3.16
3372 11208 2.202650 GCACATCGTTGCATGCCC 60.203 61.111 16.68 4.69 42.49 5.36
3373 11209 2.491152 CACATCGTTGCATGCCCC 59.509 61.111 16.68 4.28 0.00 5.80
3374 11210 2.048023 CACATCGTTGCATGCCCCT 61.048 57.895 16.68 0.00 0.00 4.79
3384 11220 0.957395 GCATGCCCCTGGTATCGATG 60.957 60.000 6.36 0.00 0.00 3.84
3412 11248 1.135344 TCATTGTTGCATCGCCACATG 60.135 47.619 0.00 0.00 34.30 3.21
3417 11253 2.825387 GCATCGCCACATGGAGCA 60.825 61.111 0.87 0.00 37.39 4.26
3425 11261 0.391528 CCACATGGAGCATCACACGA 60.392 55.000 0.00 0.00 36.25 4.35
3428 11264 3.197265 CACATGGAGCATCACACGATAA 58.803 45.455 0.00 0.00 36.25 1.75
3458 11294 1.738099 GCTACGACCACCTGTGCTG 60.738 63.158 0.00 0.00 0.00 4.41
3462 11298 2.574018 CGACCACCTGTGCTGGAGA 61.574 63.158 2.07 0.00 32.55 3.71
3472 11308 0.538287 GTGCTGGAGAAAAGCCCTGT 60.538 55.000 0.00 0.00 40.06 4.00
3473 11309 0.185901 TGCTGGAGAAAAGCCCTGTT 59.814 50.000 0.00 0.00 40.06 3.16
3474 11310 1.332195 GCTGGAGAAAAGCCCTGTTT 58.668 50.000 0.00 0.00 34.45 2.83
3485 11321 3.121030 CCTGTTTCGCCGCCTCTG 61.121 66.667 0.00 0.00 0.00 3.35
3496 11332 3.744559 GCCTCTGGCGACAACAAA 58.255 55.556 0.00 0.00 39.62 2.83
3497 11333 1.576421 GCCTCTGGCGACAACAAAG 59.424 57.895 0.00 0.00 39.62 2.77
3498 11334 1.856265 GCCTCTGGCGACAACAAAGG 61.856 60.000 0.00 0.00 39.62 3.11
3499 11335 1.237285 CCTCTGGCGACAACAAAGGG 61.237 60.000 0.00 0.00 42.06 3.95
3500 11336 0.535102 CTCTGGCGACAACAAAGGGT 60.535 55.000 0.00 0.00 42.06 4.34
3501 11337 0.817634 TCTGGCGACAACAAAGGGTG 60.818 55.000 0.00 0.00 42.06 4.61
3502 11338 2.335011 GGCGACAACAAAGGGTGC 59.665 61.111 0.00 0.00 0.00 5.01
3503 11339 2.485795 GGCGACAACAAAGGGTGCA 61.486 57.895 0.00 0.00 0.00 4.57
3504 11340 1.299089 GCGACAACAAAGGGTGCAC 60.299 57.895 8.80 8.80 0.00 4.57
3505 11341 1.724582 GCGACAACAAAGGGTGCACT 61.725 55.000 17.98 0.00 0.00 4.40
3506 11342 0.307760 CGACAACAAAGGGTGCACTC 59.692 55.000 17.98 14.03 0.00 3.51
3507 11343 0.668535 GACAACAAAGGGTGCACTCC 59.331 55.000 14.62 14.56 0.00 3.85
3508 11344 0.033601 ACAACAAAGGGTGCACTCCA 60.034 50.000 14.62 0.00 0.00 3.86
3509 11345 0.385390 CAACAAAGGGTGCACTCCAC 59.615 55.000 14.62 3.13 43.90 4.02
3510 11346 1.101049 AACAAAGGGTGCACTCCACG 61.101 55.000 14.62 4.01 45.62 4.94
3511 11347 1.525995 CAAAGGGTGCACTCCACGT 60.526 57.895 14.62 0.00 45.62 4.49
3512 11348 1.227853 AAAGGGTGCACTCCACGTC 60.228 57.895 14.62 0.00 45.62 4.34
3513 11349 1.978455 AAAGGGTGCACTCCACGTCA 61.978 55.000 14.62 0.00 45.62 4.35
3514 11350 2.357517 GGGTGCACTCCACGTCAG 60.358 66.667 17.98 0.00 45.62 3.51
3515 11351 2.421739 GGTGCACTCCACGTCAGT 59.578 61.111 17.98 0.00 45.62 3.41
3516 11352 1.227556 GGTGCACTCCACGTCAGTT 60.228 57.895 17.98 0.00 45.62 3.16
3517 11353 1.498865 GGTGCACTCCACGTCAGTTG 61.499 60.000 17.98 0.00 45.62 3.16
3518 11354 0.810031 GTGCACTCCACGTCAGTTGT 60.810 55.000 10.32 0.00 34.22 3.32
3519 11355 0.529773 TGCACTCCACGTCAGTTGTC 60.530 55.000 0.00 0.00 0.00 3.18
3520 11356 1.548973 GCACTCCACGTCAGTTGTCG 61.549 60.000 0.00 0.00 0.00 4.35
3521 11357 0.030235 CACTCCACGTCAGTTGTCGA 59.970 55.000 5.82 0.00 0.00 4.20
3522 11358 0.742505 ACTCCACGTCAGTTGTCGAA 59.257 50.000 5.82 0.00 0.00 3.71
3523 11359 1.129326 CTCCACGTCAGTTGTCGAAC 58.871 55.000 5.82 0.00 0.00 3.95
3524 11360 0.742505 TCCACGTCAGTTGTCGAACT 59.257 50.000 5.82 0.00 43.63 3.01
3525 11361 1.135527 TCCACGTCAGTTGTCGAACTT 59.864 47.619 5.82 0.00 40.68 2.66
3526 11362 1.257936 CCACGTCAGTTGTCGAACTTG 59.742 52.381 5.82 0.00 40.68 3.16
3527 11363 2.190161 CACGTCAGTTGTCGAACTTGA 58.810 47.619 5.82 0.00 40.68 3.02
3528 11364 2.034842 CACGTCAGTTGTCGAACTTGAC 60.035 50.000 5.82 9.36 40.68 3.18
3529 11365 1.521423 CGTCAGTTGTCGAACTTGACC 59.479 52.381 12.26 0.00 40.68 4.02
3530 11366 2.546778 GTCAGTTGTCGAACTTGACCA 58.453 47.619 8.58 0.00 40.68 4.02
3531 11367 3.131396 GTCAGTTGTCGAACTTGACCAT 58.869 45.455 8.58 0.00 40.68 3.55
3532 11368 3.059597 GTCAGTTGTCGAACTTGACCATG 60.060 47.826 8.58 0.00 40.68 3.66
3533 11369 2.872245 CAGTTGTCGAACTTGACCATGT 59.128 45.455 0.00 0.00 40.68 3.21
3534 11370 3.312421 CAGTTGTCGAACTTGACCATGTT 59.688 43.478 0.00 1.59 40.68 2.71
3535 11371 3.312421 AGTTGTCGAACTTGACCATGTTG 59.688 43.478 6.09 0.96 39.56 3.33
3536 11372 2.217750 TGTCGAACTTGACCATGTTGG 58.782 47.619 6.09 5.51 45.02 3.77
3538 11374 8.800578 AGTTGTCGAACTTGACCATGTTGGTA 62.801 42.308 0.00 0.00 45.12 3.25
3547 11383 2.403252 CCATGTTGGTAGTCCTCCAC 57.597 55.000 0.00 0.00 34.45 4.02
3548 11384 1.065418 CCATGTTGGTAGTCCTCCACC 60.065 57.143 0.00 0.00 34.45 4.61
3549 11385 1.909302 CATGTTGGTAGTCCTCCACCT 59.091 52.381 0.00 0.00 35.73 4.00
3550 11386 1.348064 TGTTGGTAGTCCTCCACCTG 58.652 55.000 0.00 0.00 35.73 4.00
3551 11387 1.349067 GTTGGTAGTCCTCCACCTGT 58.651 55.000 0.00 0.00 35.73 4.00
3552 11388 1.697982 GTTGGTAGTCCTCCACCTGTT 59.302 52.381 0.00 0.00 35.73 3.16
3553 11389 1.640917 TGGTAGTCCTCCACCTGTTC 58.359 55.000 0.00 0.00 35.73 3.18
3554 11390 1.132977 TGGTAGTCCTCCACCTGTTCA 60.133 52.381 0.00 0.00 35.73 3.18
3555 11391 1.975680 GGTAGTCCTCCACCTGTTCAA 59.024 52.381 0.00 0.00 0.00 2.69
3556 11392 2.370849 GGTAGTCCTCCACCTGTTCAAA 59.629 50.000 0.00 0.00 0.00 2.69
3557 11393 2.640316 AGTCCTCCACCTGTTCAAAC 57.360 50.000 0.00 0.00 0.00 2.93
3558 11394 1.143073 AGTCCTCCACCTGTTCAAACC 59.857 52.381 0.00 0.00 0.00 3.27
3559 11395 1.143073 GTCCTCCACCTGTTCAAACCT 59.857 52.381 0.00 0.00 0.00 3.50
3560 11396 1.420138 TCCTCCACCTGTTCAAACCTC 59.580 52.381 0.00 0.00 0.00 3.85
3561 11397 1.421646 CCTCCACCTGTTCAAACCTCT 59.578 52.381 0.00 0.00 0.00 3.69
3562 11398 2.158608 CCTCCACCTGTTCAAACCTCTT 60.159 50.000 0.00 0.00 0.00 2.85
3563 11399 3.555966 CTCCACCTGTTCAAACCTCTTT 58.444 45.455 0.00 0.00 0.00 2.52
3564 11400 3.287222 TCCACCTGTTCAAACCTCTTTG 58.713 45.455 0.00 0.00 38.56 2.77
3565 11401 2.362077 CCACCTGTTCAAACCTCTTTGG 59.638 50.000 0.00 0.00 37.87 3.28
3566 11402 2.031870 ACCTGTTCAAACCTCTTTGGC 58.968 47.619 0.00 0.00 37.87 4.52
3567 11403 1.001378 CCTGTTCAAACCTCTTTGGCG 60.001 52.381 0.00 0.00 37.87 5.69
3568 11404 1.946768 CTGTTCAAACCTCTTTGGCGA 59.053 47.619 0.00 0.00 37.87 5.54
3569 11405 1.946768 TGTTCAAACCTCTTTGGCGAG 59.053 47.619 0.00 0.00 37.87 5.03
3570 11406 0.951558 TTCAAACCTCTTTGGCGAGC 59.048 50.000 0.00 0.00 37.87 5.03
3571 11407 0.179032 TCAAACCTCTTTGGCGAGCA 60.179 50.000 0.00 0.00 37.87 4.26
3572 11408 0.239347 CAAACCTCTTTGGCGAGCAG 59.761 55.000 0.00 0.00 40.22 4.24
3573 11409 0.108585 AAACCTCTTTGGCGAGCAGA 59.891 50.000 0.00 0.00 40.22 4.26
3574 11410 0.321122 AACCTCTTTGGCGAGCAGAG 60.321 55.000 0.00 0.90 40.22 3.35
3575 11411 1.449246 CCTCTTTGGCGAGCAGAGG 60.449 63.158 13.29 13.29 46.11 3.69
3576 11412 1.593787 CTCTTTGGCGAGCAGAGGA 59.406 57.895 0.00 0.00 31.91 3.71
3577 11413 0.459934 CTCTTTGGCGAGCAGAGGAG 60.460 60.000 0.00 0.00 31.91 3.69
3578 11414 1.449246 CTTTGGCGAGCAGAGGAGG 60.449 63.158 0.00 0.00 0.00 4.30
3579 11415 2.866085 CTTTGGCGAGCAGAGGAGGG 62.866 65.000 0.00 0.00 0.00 4.30
3582 11418 3.844090 GCGAGCAGAGGAGGGGAC 61.844 72.222 0.00 0.00 0.00 4.46
3583 11419 2.363018 CGAGCAGAGGAGGGGACA 60.363 66.667 0.00 0.00 0.00 4.02
3584 11420 1.760086 CGAGCAGAGGAGGGGACAT 60.760 63.158 0.00 0.00 0.00 3.06
3585 11421 0.468214 CGAGCAGAGGAGGGGACATA 60.468 60.000 0.00 0.00 0.00 2.29
3586 11422 1.794714 GAGCAGAGGAGGGGACATAA 58.205 55.000 0.00 0.00 0.00 1.90
3587 11423 1.414550 GAGCAGAGGAGGGGACATAAC 59.585 57.143 0.00 0.00 0.00 1.89
3588 11424 0.105039 GCAGAGGAGGGGACATAACG 59.895 60.000 0.00 0.00 0.00 3.18
3589 11425 0.105039 CAGAGGAGGGGACATAACGC 59.895 60.000 0.00 0.00 0.00 4.84
3590 11426 1.049289 AGAGGAGGGGACATAACGCC 61.049 60.000 0.00 0.00 42.13 5.68
3591 11427 1.306654 AGGAGGGGACATAACGCCA 60.307 57.895 0.00 0.00 43.85 5.69
3592 11428 1.153229 GGAGGGGACATAACGCCAC 60.153 63.158 0.00 0.00 43.85 5.01
3593 11429 1.153229 GAGGGGACATAACGCCACC 60.153 63.158 0.00 0.00 43.85 4.61
3594 11430 1.906105 GAGGGGACATAACGCCACCA 61.906 60.000 0.00 0.00 43.85 4.17
3595 11431 1.747745 GGGGACATAACGCCACCAC 60.748 63.158 0.00 0.00 41.56 4.16
3596 11432 1.003112 GGGACATAACGCCACCACA 60.003 57.895 0.00 0.00 0.00 4.17
3597 11433 0.393808 GGGACATAACGCCACCACAT 60.394 55.000 0.00 0.00 0.00 3.21
3598 11434 0.732571 GGACATAACGCCACCACATG 59.267 55.000 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.277737 CTGGGCATGCCACCTCAT 59.722 61.111 36.56 0.00 37.98 2.90
21 22 4.936891 TGATCATAGTCAATGTCGACTGG 58.063 43.478 17.92 6.24 45.79 4.00
28 29 4.718774 ACTGGTCCTGATCATAGTCAATGT 59.281 41.667 2.23 0.00 36.89 2.71
36 37 3.118775 CGGTCAAACTGGTCCTGATCATA 60.119 47.826 2.23 0.00 0.00 2.15
37 38 2.355108 CGGTCAAACTGGTCCTGATCAT 60.355 50.000 2.23 0.00 0.00 2.45
44 45 1.003718 CCCTCGGTCAAACTGGTCC 60.004 63.158 0.00 0.00 0.00 4.46
45 46 0.395312 TTCCCTCGGTCAAACTGGTC 59.605 55.000 0.00 0.00 0.00 4.02
49 50 3.502123 TGATTTTCCCTCGGTCAAACT 57.498 42.857 0.00 0.00 0.00 2.66
53 54 2.611971 CGTCTTGATTTTCCCTCGGTCA 60.612 50.000 0.00 0.00 0.00 4.02
57 58 2.271800 CCTCGTCTTGATTTTCCCTCG 58.728 52.381 0.00 0.00 0.00 4.63
61 62 5.432885 TTGAAACCTCGTCTTGATTTTCC 57.567 39.130 0.00 0.00 31.79 3.13
62 63 6.495706 ACTTTGAAACCTCGTCTTGATTTTC 58.504 36.000 0.00 0.00 32.72 2.29
63 64 6.451064 ACTTTGAAACCTCGTCTTGATTTT 57.549 33.333 0.00 0.00 0.00 1.82
67 68 3.118555 TGGACTTTGAAACCTCGTCTTGA 60.119 43.478 0.00 0.00 0.00 3.02
71 72 2.143925 CCTGGACTTTGAAACCTCGTC 58.856 52.381 0.00 0.00 0.00 4.20
73 74 1.202770 ACCCTGGACTTTGAAACCTCG 60.203 52.381 0.00 0.00 0.00 4.63
87 88 4.082625 GGTCGGTTTAATTTACAACCCTGG 60.083 45.833 7.83 0.00 39.58 4.45
96 97 9.097257 CTTAAACTATCCGGTCGGTTTAATTTA 57.903 33.333 25.23 13.92 40.72 1.40
106 107 4.114058 TCAACCTTAAACTATCCGGTCG 57.886 45.455 0.00 0.00 0.00 4.79
121 122 5.774690 TCTGCAAAAGTCCATATTTCAACCT 59.225 36.000 0.00 0.00 0.00 3.50
136 137 7.637132 CACAAAAGCATAAAACTTCTGCAAAAG 59.363 33.333 0.00 0.00 38.37 2.27
144 145 8.574196 ACATACACACAAAAGCATAAAACTTC 57.426 30.769 0.00 0.00 0.00 3.01
149 150 7.753309 ACCTACATACACACAAAAGCATAAA 57.247 32.000 0.00 0.00 0.00 1.40
152 153 6.003950 AGAACCTACATACACACAAAAGCAT 58.996 36.000 0.00 0.00 0.00 3.79
153 154 5.373222 AGAACCTACATACACACAAAAGCA 58.627 37.500 0.00 0.00 0.00 3.91
154 155 5.941948 AGAACCTACATACACACAAAAGC 57.058 39.130 0.00 0.00 0.00 3.51
155 156 7.259290 ACAAGAACCTACATACACACAAAAG 57.741 36.000 0.00 0.00 0.00 2.27
156 157 7.633193 AACAAGAACCTACATACACACAAAA 57.367 32.000 0.00 0.00 0.00 2.44
157 158 7.633193 AAACAAGAACCTACATACACACAAA 57.367 32.000 0.00 0.00 0.00 2.83
164 165 9.620660 CCATAAACAAAACAAGAACCTACATAC 57.379 33.333 0.00 0.00 0.00 2.39
165 166 9.357161 ACCATAAACAAAACAAGAACCTACATA 57.643 29.630 0.00 0.00 0.00 2.29
166 167 8.245195 ACCATAAACAAAACAAGAACCTACAT 57.755 30.769 0.00 0.00 0.00 2.29
207 228 1.275291 TGGGAACAAGCTCGACCTAAG 59.725 52.381 0.00 0.00 37.44 2.18
218 239 0.881118 CATCCAACCGTGGGAACAAG 59.119 55.000 0.00 0.00 46.01 3.16
252 288 4.502604 CCGGTTCAGTCACTTTCTTTCCTA 60.503 45.833 0.00 0.00 0.00 2.94
314 350 1.413445 AGTTGCAGCTGCCAAAATTGA 59.587 42.857 34.64 11.80 41.18 2.57
362 398 2.312390 GCTAGGAGAGTCCCTTGGTAG 58.688 57.143 5.60 0.00 37.19 3.18
364 400 0.413832 TGCTAGGAGAGTCCCTTGGT 59.586 55.000 5.60 0.00 37.19 3.67
365 401 0.827368 GTGCTAGGAGAGTCCCTTGG 59.173 60.000 5.60 2.20 37.19 3.61
380 3120 2.919856 ACAGAGAGGTGCGGTGCT 60.920 61.111 0.00 0.00 0.00 4.40
383 3123 1.610673 ATGGACAGAGAGGTGCGGT 60.611 57.895 0.00 0.00 30.91 5.68
401 3141 0.389817 CGGTGAGGCGATGTTCTTCA 60.390 55.000 0.00 0.00 0.00 3.02
423 3163 0.857935 GCGCACTGCATACTGAGATC 59.142 55.000 0.30 0.00 45.45 2.75
424 3164 2.983433 GCGCACTGCATACTGAGAT 58.017 52.632 0.30 0.00 45.45 2.75
448 3188 0.034670 GCTTTGAGTGAGGGCTGGAT 60.035 55.000 0.00 0.00 0.00 3.41
451 3191 1.163554 GAAGCTTTGAGTGAGGGCTG 58.836 55.000 0.00 0.00 33.30 4.85
483 3223 1.135139 CGATCGTCAGGAACAGGACAT 59.865 52.381 7.03 0.00 35.17 3.06
495 3235 0.518195 TGAGTAACGCACGATCGTCA 59.482 50.000 19.84 7.89 42.46 4.35
502 3243 1.081641 ACGGAGTGAGTAACGCACG 60.082 57.895 0.00 0.00 42.51 5.34
575 3316 2.097728 GGCCATTTCGTCGAACGC 59.902 61.111 7.29 9.48 42.21 4.84
576 3317 2.377310 ACGGCCATTTCGTCGAACG 61.377 57.895 7.29 10.06 44.19 3.95
628 3376 1.738099 ACGCTGACCTGATTGACGC 60.738 57.895 0.00 0.00 0.00 5.19
631 3379 0.671472 CAGCACGCTGACCTGATTGA 60.671 55.000 13.87 0.00 46.30 2.57
648 3396 0.035458 GGAGACCAGGGACAACACAG 59.965 60.000 0.00 0.00 0.00 3.66
653 3401 2.537143 GTCTTAGGAGACCAGGGACAA 58.463 52.381 0.00 0.00 45.34 3.18
721 3469 5.526846 ACCAGCTTCTAGACGTACTATGTAC 59.473 44.000 0.00 0.00 0.00 2.90
724 3472 5.759273 ACTACCAGCTTCTAGACGTACTATG 59.241 44.000 0.00 0.00 0.00 2.23
778 3653 6.436778 AATCCTTGATTGCTAGCTAACCAGC 61.437 44.000 17.23 0.00 38.24 4.85
782 3657 7.255277 CCCTTAAATCCTTGATTGCTAGCTAAC 60.255 40.741 17.23 7.94 32.14 2.34
789 3664 2.689983 CGCCCTTAAATCCTTGATTGCT 59.310 45.455 0.00 0.00 32.14 3.91
794 3669 2.823154 CCAAACGCCCTTAAATCCTTGA 59.177 45.455 0.00 0.00 0.00 3.02
795 3670 2.560981 ACCAAACGCCCTTAAATCCTTG 59.439 45.455 0.00 0.00 0.00 3.61
796 3671 2.884320 ACCAAACGCCCTTAAATCCTT 58.116 42.857 0.00 0.00 0.00 3.36
797 3672 2.597578 ACCAAACGCCCTTAAATCCT 57.402 45.000 0.00 0.00 0.00 3.24
798 3673 3.490249 GCATACCAAACGCCCTTAAATCC 60.490 47.826 0.00 0.00 0.00 3.01
799 3674 3.490249 GGCATACCAAACGCCCTTAAATC 60.490 47.826 0.00 0.00 40.07 2.17
800 3675 2.429250 GGCATACCAAACGCCCTTAAAT 59.571 45.455 0.00 0.00 40.07 1.40
801 3676 1.819903 GGCATACCAAACGCCCTTAAA 59.180 47.619 0.00 0.00 40.07 1.52
802 3677 1.271982 TGGCATACCAAACGCCCTTAA 60.272 47.619 0.00 0.00 45.37 1.85
803 3678 0.328592 TGGCATACCAAACGCCCTTA 59.671 50.000 0.00 0.00 45.37 2.69
804 3679 1.075836 TGGCATACCAAACGCCCTT 59.924 52.632 0.00 0.00 45.37 3.95
805 3680 2.760477 TGGCATACCAAACGCCCT 59.240 55.556 0.00 0.00 45.37 5.19
814 3689 7.054491 AGAAATGAAAATACCATGGCATACC 57.946 36.000 13.04 2.03 0.00 2.73
818 3693 9.420118 AGTATAAGAAATGAAAATACCATGGCA 57.580 29.630 13.04 0.00 0.00 4.92
856 3731 9.629878 TGGGTACTAGTTTCTGTTCAAAAATAA 57.370 29.630 0.00 0.00 0.00 1.40
857 3732 9.802039 ATGGGTACTAGTTTCTGTTCAAAAATA 57.198 29.630 0.00 0.00 0.00 1.40
858 3733 8.706322 ATGGGTACTAGTTTCTGTTCAAAAAT 57.294 30.769 0.00 0.00 0.00 1.82
859 3734 8.528044 AATGGGTACTAGTTTCTGTTCAAAAA 57.472 30.769 0.00 0.00 0.00 1.94
860 3735 8.528044 AAATGGGTACTAGTTTCTGTTCAAAA 57.472 30.769 0.00 0.00 0.00 2.44
861 3736 8.528044 AAAATGGGTACTAGTTTCTGTTCAAA 57.472 30.769 0.00 0.00 29.75 2.69
862 3737 9.629878 TTAAAATGGGTACTAGTTTCTGTTCAA 57.370 29.630 0.00 0.00 36.39 2.69
863 3738 9.280174 CTTAAAATGGGTACTAGTTTCTGTTCA 57.720 33.333 0.00 0.00 36.39 3.18
864 3739 9.281371 ACTTAAAATGGGTACTAGTTTCTGTTC 57.719 33.333 0.00 0.00 36.39 3.18
865 3740 9.063615 CACTTAAAATGGGTACTAGTTTCTGTT 57.936 33.333 0.00 0.00 36.39 3.16
866 3741 8.215736 ACACTTAAAATGGGTACTAGTTTCTGT 58.784 33.333 0.00 0.00 36.39 3.41
867 3742 8.504005 CACACTTAAAATGGGTACTAGTTTCTG 58.496 37.037 0.00 0.00 36.39 3.02
868 3743 7.174426 GCACACTTAAAATGGGTACTAGTTTCT 59.826 37.037 0.00 0.00 36.39 2.52
869 3744 7.040961 TGCACACTTAAAATGGGTACTAGTTTC 60.041 37.037 0.00 0.00 36.39 2.78
870 3745 6.773685 TGCACACTTAAAATGGGTACTAGTTT 59.226 34.615 0.00 0.00 40.68 2.66
871 3746 6.300703 TGCACACTTAAAATGGGTACTAGTT 58.699 36.000 0.00 0.00 0.00 2.24
872 3747 5.871834 TGCACACTTAAAATGGGTACTAGT 58.128 37.500 0.00 0.00 0.00 2.57
873 3748 5.354234 CCTGCACACTTAAAATGGGTACTAG 59.646 44.000 0.00 0.00 0.00 2.57
874 3749 5.250200 CCTGCACACTTAAAATGGGTACTA 58.750 41.667 0.00 0.00 0.00 1.82
875 3750 4.079253 CCTGCACACTTAAAATGGGTACT 58.921 43.478 0.00 0.00 0.00 2.73
876 3751 3.366985 GCCTGCACACTTAAAATGGGTAC 60.367 47.826 0.00 0.00 0.00 3.34
877 3752 2.823154 GCCTGCACACTTAAAATGGGTA 59.177 45.455 0.00 0.00 0.00 3.69
878 3753 1.618343 GCCTGCACACTTAAAATGGGT 59.382 47.619 0.00 0.00 0.00 4.51
879 3754 1.066929 GGCCTGCACACTTAAAATGGG 60.067 52.381 0.00 0.00 0.00 4.00
880 3755 1.617850 TGGCCTGCACACTTAAAATGG 59.382 47.619 3.32 0.00 0.00 3.16
881 3756 3.598019 ATGGCCTGCACACTTAAAATG 57.402 42.857 3.32 0.00 0.00 2.32
882 3757 4.622260 AAATGGCCTGCACACTTAAAAT 57.378 36.364 3.32 0.00 0.00 1.82
883 3758 4.125703 CAAAATGGCCTGCACACTTAAAA 58.874 39.130 3.32 0.00 0.00 1.52
884 3759 3.726607 CAAAATGGCCTGCACACTTAAA 58.273 40.909 3.32 0.00 0.00 1.52
885 3760 2.547642 GCAAAATGGCCTGCACACTTAA 60.548 45.455 9.69 0.00 38.48 1.85
886 3761 1.000731 GCAAAATGGCCTGCACACTTA 59.999 47.619 9.69 0.00 38.48 2.24
887 3762 0.249996 GCAAAATGGCCTGCACACTT 60.250 50.000 9.69 0.00 38.48 3.16
888 3763 1.368579 GCAAAATGGCCTGCACACT 59.631 52.632 9.69 0.00 38.48 3.55
889 3764 3.955775 GCAAAATGGCCTGCACAC 58.044 55.556 9.69 0.00 38.48 3.82
897 3772 0.587768 GCTTGTTGTGGCAAAATGGC 59.412 50.000 0.00 0.00 44.03 4.40
898 3773 1.202675 AGGCTTGTTGTGGCAAAATGG 60.203 47.619 0.00 0.00 0.00 3.16
899 3774 2.243602 AGGCTTGTTGTGGCAAAATG 57.756 45.000 0.00 0.00 0.00 2.32
900 3775 2.485302 GGAAGGCTTGTTGTGGCAAAAT 60.485 45.455 3.46 0.00 0.00 1.82
1003 3885 2.775032 TTTGCTGCCCGGACGTACTC 62.775 60.000 0.73 0.00 0.00 2.59
1005 3887 2.357760 TTTGCTGCCCGGACGTAC 60.358 61.111 0.73 0.00 0.00 3.67
1006 3888 2.357760 GTTTGCTGCCCGGACGTA 60.358 61.111 0.73 0.00 0.00 3.57
1007 3889 4.555709 TGTTTGCTGCCCGGACGT 62.556 61.111 0.73 0.00 0.00 4.34
1008 3890 4.025401 GTGTTTGCTGCCCGGACG 62.025 66.667 0.73 0.00 0.00 4.79
1009 3891 3.670377 GGTGTTTGCTGCCCGGAC 61.670 66.667 0.73 0.00 0.00 4.79
1010 3892 4.196778 TGGTGTTTGCTGCCCGGA 62.197 61.111 0.73 0.00 0.00 5.14
1011 3893 3.977244 GTGGTGTTTGCTGCCCGG 61.977 66.667 0.00 0.00 0.00 5.73
1012 3894 3.977244 GGTGGTGTTTGCTGCCCG 61.977 66.667 0.00 0.00 0.00 6.13
1015 4050 2.028043 GCTGGTGGTGTTTGCTGC 59.972 61.111 0.00 0.00 0.00 5.25
1052 4104 3.118738 AGTGCTAACTAACCAGGAATCCG 60.119 47.826 0.00 0.00 33.79 4.18
1084 4136 2.630158 CTCCATCTTGAGTTCCTGCAG 58.370 52.381 6.78 6.78 0.00 4.41
1394 9166 0.041833 TGAGCTGCTAACCTCCTCCT 59.958 55.000 0.15 0.00 0.00 3.69
1395 9167 1.127343 ATGAGCTGCTAACCTCCTCC 58.873 55.000 0.15 0.00 0.00 4.30
1396 9168 2.998316 AATGAGCTGCTAACCTCCTC 57.002 50.000 0.15 0.00 0.00 3.71
1397 9169 2.092699 GGAAATGAGCTGCTAACCTCCT 60.093 50.000 0.15 0.00 0.00 3.69
1398 9170 2.293170 GGAAATGAGCTGCTAACCTCC 58.707 52.381 0.15 0.95 0.00 4.30
1399 9171 2.293170 GGGAAATGAGCTGCTAACCTC 58.707 52.381 0.15 0.00 0.00 3.85
1415 9187 1.957186 CGAAGACGTTTGCGGGGAA 60.957 57.895 0.00 0.00 43.45 3.97
1449 9221 2.200373 TGGCCTTGTTCTTCTTAGCC 57.800 50.000 3.32 0.00 39.41 3.93
1454 9226 2.644798 AGGTACATGGCCTTGTTCTTCT 59.355 45.455 27.40 16.52 31.04 2.85
1515 9287 0.677288 ACTCCGTCAAACCATCGACA 59.323 50.000 0.00 0.00 32.24 4.35
1520 9292 3.020984 ACAACAAACTCCGTCAAACCAT 58.979 40.909 0.00 0.00 0.00 3.55
1524 9296 5.379732 AAAGAACAACAAACTCCGTCAAA 57.620 34.783 0.00 0.00 0.00 2.69
1569 9341 0.384309 ACGCATCATATGGTCGACGT 59.616 50.000 9.92 9.78 0.00 4.34
1605 9377 0.321210 TGTGGCGTCCGAACATGATT 60.321 50.000 0.00 0.00 0.00 2.57
1899 9674 2.125350 GAGCAGAACTCGGCCCAG 60.125 66.667 0.00 0.00 37.79 4.45
1924 9699 1.883638 GCTTCCACTGTCCATGCTTGA 60.884 52.381 0.22 0.00 0.00 3.02
2024 9802 0.101579 GAGGTAGCTGAACTCCTCGC 59.898 60.000 0.00 0.00 34.85 5.03
2103 9881 2.802667 CTCGGCCAATTCGTCTGCG 61.803 63.158 2.24 0.00 39.92 5.18
2552 10330 1.077993 ACAGGGGAGTACTCTGCTTCT 59.922 52.381 21.88 9.75 32.53 2.85
2556 10334 0.820871 CAGACAGGGGAGTACTCTGC 59.179 60.000 21.88 6.71 32.19 4.26
2616 10394 7.605449 ACACAATCCCTGTAAAAATCATTCTG 58.395 34.615 0.00 0.00 36.10 3.02
2638 10416 7.012610 GGAGTACTAGAGATTCCAACTCTACAC 59.987 44.444 0.00 0.00 43.31 2.90
2906 10717 4.161189 TGCACAAACAAGAATTTCTTCCCA 59.839 37.500 8.71 0.00 33.78 4.37
2918 10729 8.627487 TTAGTTATTTTGAGTGCACAAACAAG 57.373 30.769 21.04 0.00 39.08 3.16
2942 10753 4.093011 TGCCTGGGTATATTTTGCACTTT 58.907 39.130 0.00 0.00 0.00 2.66
2943 10754 3.707316 TGCCTGGGTATATTTTGCACTT 58.293 40.909 0.00 0.00 0.00 3.16
2957 10768 0.679002 CATCCACACTCTTGCCTGGG 60.679 60.000 0.00 0.00 0.00 4.45
2961 10772 0.615331 TCCTCATCCACACTCTTGCC 59.385 55.000 0.00 0.00 0.00 4.52
2971 10782 1.717032 CGGGGACTATTCCTCATCCA 58.283 55.000 0.00 0.00 43.80 3.41
2972 10783 0.977395 CCGGGGACTATTCCTCATCC 59.023 60.000 0.00 0.00 43.80 3.51
2978 10789 0.179054 GTTGCTCCGGGGACTATTCC 60.179 60.000 4.80 0.00 41.95 3.01
2986 10797 4.722700 CCCTGTGTTGCTCCGGGG 62.723 72.222 0.00 0.00 40.82 5.73
2987 10798 3.636231 TCCCTGTGTTGCTCCGGG 61.636 66.667 0.00 0.00 36.21 5.73
2988 10799 2.358737 GTCCCTGTGTTGCTCCGG 60.359 66.667 0.00 0.00 0.00 5.14
2991 10802 1.541588 GATTTGGTCCCTGTGTTGCTC 59.458 52.381 0.00 0.00 0.00 4.26
2992 10803 1.133513 TGATTTGGTCCCTGTGTTGCT 60.134 47.619 0.00 0.00 0.00 3.91
2993 10804 1.327303 TGATTTGGTCCCTGTGTTGC 58.673 50.000 0.00 0.00 0.00 4.17
2999 10810 5.473066 AATTGTTCTTGATTTGGTCCCTG 57.527 39.130 0.00 0.00 0.00 4.45
3034 10845 6.529829 TCTTGATTGACGGTTTTGAGTTTTTG 59.470 34.615 0.00 0.00 0.00 2.44
3076 10887 5.675970 TCGTATTTGTTTCGCTTCTTCTTG 58.324 37.500 0.00 0.00 0.00 3.02
3077 10888 5.917541 TCGTATTTGTTTCGCTTCTTCTT 57.082 34.783 0.00 0.00 0.00 2.52
3078 10889 5.917541 TTCGTATTTGTTTCGCTTCTTCT 57.082 34.783 0.00 0.00 0.00 2.85
3093 10904 4.579869 ACACAAGCCTCAAGATTCGTATT 58.420 39.130 0.00 0.00 0.00 1.89
3097 10908 2.666619 GCAACACAAGCCTCAAGATTCG 60.667 50.000 0.00 0.00 0.00 3.34
3104 10915 3.286751 GCCGCAACACAAGCCTCA 61.287 61.111 0.00 0.00 0.00 3.86
3110 10921 0.955428 GGAGAGATGCCGCAACACAA 60.955 55.000 0.00 0.00 0.00 3.33
3111 10922 1.375908 GGAGAGATGCCGCAACACA 60.376 57.895 0.00 0.00 0.00 3.72
3112 10923 1.375908 TGGAGAGATGCCGCAACAC 60.376 57.895 0.00 0.00 0.00 3.32
3113 10924 1.375908 GTGGAGAGATGCCGCAACA 60.376 57.895 0.00 0.00 35.98 3.33
3114 10925 1.375908 TGTGGAGAGATGCCGCAAC 60.376 57.895 0.00 0.00 42.51 4.17
3115 10926 3.067985 TGTGGAGAGATGCCGCAA 58.932 55.556 0.00 0.00 42.51 4.85
3117 10928 1.153289 ACATGTGGAGAGATGCCGC 60.153 57.895 0.00 0.00 36.47 6.53
3118 10929 0.107993 ACACATGTGGAGAGATGCCG 60.108 55.000 28.64 0.23 34.19 5.69
3119 10930 2.119801 AACACATGTGGAGAGATGCC 57.880 50.000 28.64 0.00 34.19 4.40
3120 10931 2.163010 CCAAACACATGTGGAGAGATGC 59.837 50.000 28.64 0.00 37.03 3.91
3121 10932 2.751259 CCCAAACACATGTGGAGAGATG 59.249 50.000 28.64 16.40 37.03 2.90
3122 10933 2.881403 GCCCAAACACATGTGGAGAGAT 60.881 50.000 28.64 4.62 37.03 2.75
3123 10934 1.545428 GCCCAAACACATGTGGAGAGA 60.545 52.381 28.64 0.00 37.03 3.10
3124 10935 0.883833 GCCCAAACACATGTGGAGAG 59.116 55.000 28.64 15.16 37.03 3.20
3125 10936 0.539438 GGCCCAAACACATGTGGAGA 60.539 55.000 28.64 0.00 37.03 3.71
3126 10937 0.827089 TGGCCCAAACACATGTGGAG 60.827 55.000 28.64 17.16 37.03 3.86
3127 10938 1.112315 GTGGCCCAAACACATGTGGA 61.112 55.000 28.64 0.54 38.67 4.02
3128 10939 1.367102 GTGGCCCAAACACATGTGG 59.633 57.895 28.64 12.53 38.67 4.17
3129 10940 0.463204 TTGTGGCCCAAACACATGTG 59.537 50.000 24.25 24.25 46.98 3.21
3130 10941 1.422531 ATTGTGGCCCAAACACATGT 58.577 45.000 10.21 0.00 46.98 3.21
3131 10942 2.547299 AATTGTGGCCCAAACACATG 57.453 45.000 10.21 0.00 46.98 3.21
3132 10943 3.118112 TCAAAATTGTGGCCCAAACACAT 60.118 39.130 10.21 0.00 46.98 3.21
3133 10944 2.237143 TCAAAATTGTGGCCCAAACACA 59.763 40.909 10.21 0.00 46.22 3.72
3134 10945 2.871633 CTCAAAATTGTGGCCCAAACAC 59.128 45.455 10.21 0.00 36.44 3.32
3146 10957 5.566469 TCTTGGTAGGTACCCTCAAAATTG 58.434 41.667 8.74 0.03 45.87 2.32
3163 10974 0.545309 TGGGTAGCTCAGCTCTTGGT 60.545 55.000 0.00 0.00 40.44 3.67
3165 10976 0.901124 ACTGGGTAGCTCAGCTCTTG 59.099 55.000 0.00 0.00 40.44 3.02
3183 10994 4.602995 TGTTGTGGTTTCAAGCGAAATAC 58.397 39.130 0.00 0.00 42.90 1.89
3186 10997 3.246619 GTTGTTGTGGTTTCAAGCGAAA 58.753 40.909 0.00 0.00 38.83 3.46
3190 11001 2.182014 GACGTTGTTGTGGTTTCAAGC 58.818 47.619 0.00 0.00 0.00 4.01
3191 11002 2.422127 AGGACGTTGTTGTGGTTTCAAG 59.578 45.455 0.00 0.00 0.00 3.02
3202 11013 4.079970 TGACTATCTCTGAGGACGTTGTT 58.920 43.478 4.59 0.00 0.00 2.83
3204 11015 3.181495 GGTGACTATCTCTGAGGACGTTG 60.181 52.174 4.59 0.00 0.00 4.10
3205 11016 3.018149 GGTGACTATCTCTGAGGACGTT 58.982 50.000 4.59 0.00 0.00 3.99
3206 11017 2.026169 TGGTGACTATCTCTGAGGACGT 60.026 50.000 4.59 0.00 0.00 4.34
3214 11033 0.033011 AGCCCGTGGTGACTATCTCT 60.033 55.000 0.00 0.00 0.00 3.10
3215 11034 1.337387 GTAGCCCGTGGTGACTATCTC 59.663 57.143 0.00 0.00 0.00 2.75
3229 11048 2.187163 GAGTTCTGCCGGTAGCCC 59.813 66.667 15.66 7.41 42.71 5.19
3237 11056 1.107114 TGATCGAGAGGAGTTCTGCC 58.893 55.000 0.00 0.00 35.87 4.85
3238 11057 2.741612 CATGATCGAGAGGAGTTCTGC 58.258 52.381 0.00 0.00 35.87 4.26
3240 11059 2.382882 TGCATGATCGAGAGGAGTTCT 58.617 47.619 0.00 0.00 39.43 3.01
3251 11070 4.753610 AGGATTACAGTCAATGCATGATCG 59.246 41.667 0.00 0.00 40.97 3.69
3256 11075 5.126061 GGTTTGAGGATTACAGTCAATGCAT 59.874 40.000 0.00 0.00 30.50 3.96
3268 11087 4.617530 CGACGAGTGAAGGTTTGAGGATTA 60.618 45.833 0.00 0.00 0.00 1.75
3269 11088 3.665190 GACGAGTGAAGGTTTGAGGATT 58.335 45.455 0.00 0.00 0.00 3.01
3290 11125 0.752009 TCGACCTCTCCCCTTCATCG 60.752 60.000 0.00 0.00 0.00 3.84
3297 11132 2.143419 ATGGCATCGACCTCTCCCC 61.143 63.158 0.00 0.00 0.00 4.81
3332 11168 5.066505 GCCCACAAGTAAATCCAGATAAGTG 59.933 44.000 0.00 0.00 0.00 3.16
3336 11172 4.018870 TGTGCCCACAAGTAAATCCAGATA 60.019 41.667 0.00 0.00 38.56 1.98
3346 11182 1.518325 CAACGATGTGCCCACAAGTA 58.482 50.000 5.08 0.00 45.41 2.24
3372 11208 3.069586 TGAGGCTTTACATCGATACCAGG 59.930 47.826 0.00 0.00 0.00 4.45
3373 11209 4.322080 TGAGGCTTTACATCGATACCAG 57.678 45.455 0.00 0.00 0.00 4.00
3374 11210 4.955811 ATGAGGCTTTACATCGATACCA 57.044 40.909 0.00 0.00 0.00 3.25
3384 11220 3.429085 CGATGCAACAATGAGGCTTTAC 58.571 45.455 0.00 0.00 0.00 2.01
3412 11248 2.158957 TCCCTTTATCGTGTGATGCTCC 60.159 50.000 0.00 0.00 35.99 4.70
3417 11253 1.837439 TGGCTCCCTTTATCGTGTGAT 59.163 47.619 0.00 0.00 38.67 3.06
3458 11294 0.241213 GCGAAACAGGGCTTTTCTCC 59.759 55.000 0.00 0.00 31.82 3.71
3462 11298 3.039134 CGGCGAAACAGGGCTTTT 58.961 55.556 0.00 0.00 0.00 2.27
3485 11321 2.335011 GCACCCTTTGTTGTCGCC 59.665 61.111 0.00 0.00 0.00 5.54
3487 11323 0.307760 GAGTGCACCCTTTGTTGTCG 59.692 55.000 14.63 0.00 0.00 4.35
3494 11330 1.227853 GACGTGGAGTGCACCCTTT 60.228 57.895 14.63 0.00 0.00 3.11
3495 11331 2.383245 CTGACGTGGAGTGCACCCTT 62.383 60.000 14.63 0.00 0.00 3.95
3496 11332 2.842462 TGACGTGGAGTGCACCCT 60.842 61.111 14.63 0.00 0.00 4.34
3497 11333 2.357517 CTGACGTGGAGTGCACCC 60.358 66.667 14.63 15.00 0.00 4.61
3498 11334 1.227556 AACTGACGTGGAGTGCACC 60.228 57.895 14.63 4.90 0.00 5.01
3499 11335 0.810031 ACAACTGACGTGGAGTGCAC 60.810 55.000 9.40 9.40 0.00 4.57
3500 11336 0.529773 GACAACTGACGTGGAGTGCA 60.530 55.000 0.00 0.00 0.00 4.57
3501 11337 1.548973 CGACAACTGACGTGGAGTGC 61.549 60.000 0.00 0.00 0.00 4.40
3502 11338 0.030235 TCGACAACTGACGTGGAGTG 59.970 55.000 0.00 0.00 34.98 3.51
3503 11339 0.742505 TTCGACAACTGACGTGGAGT 59.257 50.000 0.00 0.00 34.98 3.85
3504 11340 1.129326 GTTCGACAACTGACGTGGAG 58.871 55.000 0.00 0.00 34.98 3.86
3505 11341 0.742505 AGTTCGACAACTGACGTGGA 59.257 50.000 0.00 0.00 41.64 4.02
3506 11342 1.257936 CAAGTTCGACAACTGACGTGG 59.742 52.381 0.00 0.00 42.45 4.94
3507 11343 2.034842 GTCAAGTTCGACAACTGACGTG 60.035 50.000 0.00 0.00 42.45 4.49
3508 11344 2.190981 GTCAAGTTCGACAACTGACGT 58.809 47.619 0.00 0.00 42.45 4.34
3509 11345 1.521423 GGTCAAGTTCGACAACTGACG 59.479 52.381 8.98 0.00 42.45 4.35
3510 11346 2.546778 TGGTCAAGTTCGACAACTGAC 58.453 47.619 7.32 7.32 42.45 3.51
3511 11347 2.971660 TGGTCAAGTTCGACAACTGA 57.028 45.000 0.00 0.00 42.45 3.41
3512 11348 2.872245 ACATGGTCAAGTTCGACAACTG 59.128 45.455 0.00 4.75 42.45 3.16
3513 11349 3.194005 ACATGGTCAAGTTCGACAACT 57.806 42.857 0.00 0.00 45.43 3.16
3514 11350 3.548014 CCAACATGGTCAAGTTCGACAAC 60.548 47.826 0.00 0.00 37.66 3.32
3515 11351 2.616376 CCAACATGGTCAAGTTCGACAA 59.384 45.455 0.00 0.00 37.66 3.18
3516 11352 2.217750 CCAACATGGTCAAGTTCGACA 58.782 47.619 0.00 0.00 37.66 4.35
3517 11353 2.969443 CCAACATGGTCAAGTTCGAC 57.031 50.000 0.00 0.00 31.35 4.20
3528 11364 1.065418 GGTGGAGGACTACCAACATGG 60.065 57.143 0.00 0.00 45.23 3.66
3529 11365 2.403252 GGTGGAGGACTACCAACATG 57.597 55.000 0.00 0.00 45.23 3.21
3535 11371 1.640917 TGAACAGGTGGAGGACTACC 58.359 55.000 0.00 0.00 46.07 3.18
3536 11372 3.400255 GTTTGAACAGGTGGAGGACTAC 58.600 50.000 0.00 0.00 0.00 2.73
3537 11373 2.370849 GGTTTGAACAGGTGGAGGACTA 59.629 50.000 0.00 0.00 0.00 2.59
3538 11374 1.143073 GGTTTGAACAGGTGGAGGACT 59.857 52.381 0.00 0.00 0.00 3.85
3539 11375 1.143073 AGGTTTGAACAGGTGGAGGAC 59.857 52.381 0.00 0.00 0.00 3.85
3540 11376 1.420138 GAGGTTTGAACAGGTGGAGGA 59.580 52.381 0.00 0.00 0.00 3.71
3541 11377 1.421646 AGAGGTTTGAACAGGTGGAGG 59.578 52.381 0.00 0.00 0.00 4.30
3542 11378 2.938956 AGAGGTTTGAACAGGTGGAG 57.061 50.000 0.00 0.00 0.00 3.86
3543 11379 3.287222 CAAAGAGGTTTGAACAGGTGGA 58.713 45.455 0.00 0.00 45.22 4.02
3544 11380 2.362077 CCAAAGAGGTTTGAACAGGTGG 59.638 50.000 0.00 0.00 45.22 4.61
3545 11381 2.223805 GCCAAAGAGGTTTGAACAGGTG 60.224 50.000 0.00 0.00 45.22 4.00
3546 11382 2.031870 GCCAAAGAGGTTTGAACAGGT 58.968 47.619 0.00 0.00 45.22 4.00
3547 11383 1.001378 CGCCAAAGAGGTTTGAACAGG 60.001 52.381 0.00 0.00 45.22 4.00
3548 11384 1.946768 TCGCCAAAGAGGTTTGAACAG 59.053 47.619 0.00 0.00 45.22 3.16
3549 11385 1.946768 CTCGCCAAAGAGGTTTGAACA 59.053 47.619 0.00 0.00 45.22 3.18
3550 11386 1.335051 GCTCGCCAAAGAGGTTTGAAC 60.335 52.381 0.00 0.00 45.22 3.18
3551 11387 0.951558 GCTCGCCAAAGAGGTTTGAA 59.048 50.000 0.00 0.00 45.22 2.69
3552 11388 0.179032 TGCTCGCCAAAGAGGTTTGA 60.179 50.000 0.00 0.00 45.22 2.69
3553 11389 0.239347 CTGCTCGCCAAAGAGGTTTG 59.761 55.000 0.00 0.00 42.49 2.93
3554 11390 0.108585 TCTGCTCGCCAAAGAGGTTT 59.891 50.000 0.00 0.00 40.61 3.27
3555 11391 0.321122 CTCTGCTCGCCAAAGAGGTT 60.321 55.000 0.00 0.00 40.61 3.50
3556 11392 1.294780 CTCTGCTCGCCAAAGAGGT 59.705 57.895 0.00 0.00 40.61 3.85
3557 11393 4.198625 CTCTGCTCGCCAAAGAGG 57.801 61.111 0.00 0.00 38.63 3.69
3558 11394 0.459934 CTCCTCTGCTCGCCAAAGAG 60.460 60.000 0.00 0.00 41.03 2.85
3559 11395 1.593787 CTCCTCTGCTCGCCAAAGA 59.406 57.895 0.00 0.00 0.00 2.52
3560 11396 1.449246 CCTCCTCTGCTCGCCAAAG 60.449 63.158 0.00 0.00 0.00 2.77
3561 11397 2.665000 CCTCCTCTGCTCGCCAAA 59.335 61.111 0.00 0.00 0.00 3.28
3562 11398 3.393970 CCCTCCTCTGCTCGCCAA 61.394 66.667 0.00 0.00 0.00 4.52
3565 11401 3.844090 GTCCCCTCCTCTGCTCGC 61.844 72.222 0.00 0.00 0.00 5.03
3566 11402 0.468214 TATGTCCCCTCCTCTGCTCG 60.468 60.000 0.00 0.00 0.00 5.03
3567 11403 1.414550 GTTATGTCCCCTCCTCTGCTC 59.585 57.143 0.00 0.00 0.00 4.26
3568 11404 1.501582 GTTATGTCCCCTCCTCTGCT 58.498 55.000 0.00 0.00 0.00 4.24
3569 11405 0.105039 CGTTATGTCCCCTCCTCTGC 59.895 60.000 0.00 0.00 0.00 4.26
3570 11406 0.105039 GCGTTATGTCCCCTCCTCTG 59.895 60.000 0.00 0.00 0.00 3.35
3571 11407 1.049289 GGCGTTATGTCCCCTCCTCT 61.049 60.000 0.00 0.00 0.00 3.69
3572 11408 1.335132 TGGCGTTATGTCCCCTCCTC 61.335 60.000 0.00 0.00 0.00 3.71
3573 11409 1.306654 TGGCGTTATGTCCCCTCCT 60.307 57.895 0.00 0.00 0.00 3.69
3574 11410 1.153229 GTGGCGTTATGTCCCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
3575 11411 1.153229 GGTGGCGTTATGTCCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
3576 11412 1.921346 TGGTGGCGTTATGTCCCCT 60.921 57.895 0.00 0.00 0.00 4.79
3577 11413 1.747745 GTGGTGGCGTTATGTCCCC 60.748 63.158 0.00 0.00 0.00 4.81
3578 11414 0.393808 ATGTGGTGGCGTTATGTCCC 60.394 55.000 0.00 0.00 0.00 4.46
3579 11415 0.732571 CATGTGGTGGCGTTATGTCC 59.267 55.000 0.00 0.00 0.00 4.02
3580 11416 0.732571 CCATGTGGTGGCGTTATGTC 59.267 55.000 0.00 0.00 42.12 3.06
3581 11417 2.866872 CCATGTGGTGGCGTTATGT 58.133 52.632 0.00 0.00 42.12 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.