Multiple sequence alignment - TraesCS1B01G335600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G335600 chr1B 100.000 2464 0 0 995 3458 562475806 562473343 0.000000e+00 4551
1 TraesCS1B01G335600 chr1B 90.899 934 79 2 995 1928 562481967 562481040 0.000000e+00 1249
2 TraesCS1B01G335600 chr1B 100.000 657 0 0 1 657 562476800 562476144 0.000000e+00 1214
3 TraesCS1B01G335600 chr1B 81.886 944 150 12 998 1923 562488797 562489737 0.000000e+00 776
4 TraesCS1B01G335600 chr1B 83.612 659 106 1 1928 2584 562458365 562457707 4.900000e-173 617
5 TraesCS1B01G335600 chr1B 88.395 517 34 12 144 657 562482576 562482083 1.780000e-167 599
6 TraesCS1B01G335600 chr1B 79.705 611 120 3 1928 2536 562484909 562484301 4.100000e-119 438
7 TraesCS1B01G335600 chr1B 85.340 191 14 5 1 179 562455056 562454868 5.890000e-43 185
8 TraesCS1B01G335600 chr1B 78.289 304 53 10 2673 2969 562468000 562467703 2.120000e-42 183
9 TraesCS1B01G335600 chr1B 91.753 97 8 0 1 97 562482652 562482556 6.020000e-28 135
10 TraesCS1B01G335600 chr1B 88.889 99 5 4 526 624 562454476 562454384 2.180000e-22 117
11 TraesCS1B01G335600 chr1B 79.070 172 19 7 3295 3458 562467706 562467544 6.110000e-18 102
12 TraesCS1B01G335600 chrUn 92.398 934 62 4 996 1923 939962 940892 0.000000e+00 1323
13 TraesCS1B01G335600 chrUn 92.773 844 34 7 2136 2968 346791482 346792309 0.000000e+00 1195
14 TraesCS1B01G335600 chrUn 92.588 850 36 7 2136 2974 396979912 396979079 0.000000e+00 1195
15 TraesCS1B01G335600 chrUn 97.129 209 6 0 1926 2134 940928 941136 1.530000e-93 353
16 TraesCS1B01G335600 chrUn 88.811 143 8 6 3296 3438 346792309 346792443 5.940000e-38 169
17 TraesCS1B01G335600 chrUn 88.811 143 8 6 3296 3438 396979085 396978951 5.940000e-38 169
18 TraesCS1B01G335600 chr1D 90.685 934 81 2 995 1928 416114971 416114044 0.000000e+00 1238
19 TraesCS1B01G335600 chr1D 82.284 937 153 10 998 1923 416127086 416128020 0.000000e+00 798
20 TraesCS1B01G335600 chr1D 94.242 521 22 5 140 657 416115934 416115419 0.000000e+00 789
21 TraesCS1B01G335600 chr1D 84.370 659 99 3 1928 2584 416114011 416113355 0.000000e+00 643
22 TraesCS1B01G335600 chr1D 79.623 584 98 12 2009 2577 416212851 416213428 1.930000e-107 399
23 TraesCS1B01G335600 chr1D 80.202 495 50 31 1 464 416110435 416109958 9.250000e-86 327
24 TraesCS1B01G335600 chr1D 79.692 389 74 4 1280 1667 416345831 416346215 3.400000e-70 276
25 TraesCS1B01G335600 chr1D 82.439 205 31 5 995 1195 416307934 416308137 1.280000e-39 174
26 TraesCS1B01G335600 chr1D 89.899 99 4 4 526 624 416109946 416109854 4.690000e-24 122
27 TraesCS1B01G335600 chr1A 90.192 938 86 2 995 1926 513649767 513648830 0.000000e+00 1218
28 TraesCS1B01G335600 chr1A 92.237 657 43 5 6 657 513651052 513650399 0.000000e+00 924
29 TraesCS1B01G335600 chr1A 81.003 937 165 8 998 1923 513660750 513661684 0.000000e+00 732
30 TraesCS1B01G335600 chr1A 84.627 657 101 0 1928 2584 513635934 513635278 0.000000e+00 654
31 TraesCS1B01G335600 chr1A 84.074 540 77 5 1393 1926 513636505 513635969 2.380000e-141 512
32 TraesCS1B01G335600 chr1A 80.428 608 111 7 1934 2537 513652866 513652263 1.130000e-124 457
33 TraesCS1B01G335600 chr1A 83.060 366 39 13 1 350 513632592 513632234 9.320000e-81 311
34 TraesCS1B01G335600 chr1A 83.333 288 33 7 2579 2853 513648065 513647780 5.730000e-63 252
35 TraesCS1B01G335600 chr1A 79.457 258 32 13 210 459 513637058 513636814 2.760000e-36 163
36 TraesCS1B01G335600 chr1A 80.114 176 29 4 2755 2926 513634891 513634718 3.620000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G335600 chr1B 562473343 562476800 3457 True 2882.500000 4551 100.0000 1 3458 2 chr1B.!!$R3 3457
1 TraesCS1B01G335600 chr1B 562488797 562489737 940 False 776.000000 776 81.8860 998 1923 1 chr1B.!!$F1 925
2 TraesCS1B01G335600 chr1B 562481040 562484909 3869 True 605.250000 1249 87.6880 1 2536 4 chr1B.!!$R4 2535
3 TraesCS1B01G335600 chr1B 562454384 562458365 3981 True 306.333333 617 85.9470 1 2584 3 chr1B.!!$R1 2583
4 TraesCS1B01G335600 chrUn 939962 941136 1174 False 838.000000 1323 94.7635 996 2134 2 chrUn.!!$F1 1138
5 TraesCS1B01G335600 chrUn 346791482 346792443 961 False 682.000000 1195 90.7920 2136 3438 2 chrUn.!!$F2 1302
6 TraesCS1B01G335600 chrUn 396978951 396979912 961 True 682.000000 1195 90.6995 2136 3438 2 chrUn.!!$R1 1302
7 TraesCS1B01G335600 chr1D 416127086 416128020 934 False 798.000000 798 82.2840 998 1923 1 chr1D.!!$F1 925
8 TraesCS1B01G335600 chr1D 416109854 416115934 6080 True 623.800000 1238 87.8796 1 2584 5 chr1D.!!$R1 2583
9 TraesCS1B01G335600 chr1D 416212851 416213428 577 False 399.000000 399 79.6230 2009 2577 1 chr1D.!!$F2 568
10 TraesCS1B01G335600 chr1A 513660750 513661684 934 False 732.000000 732 81.0030 998 1923 1 chr1A.!!$F1 925
11 TraesCS1B01G335600 chr1A 513647780 513652866 5086 True 712.750000 1218 86.5475 6 2853 4 chr1A.!!$R2 2847
12 TraesCS1B01G335600 chr1A 513632234 513637058 4824 True 353.200000 654 82.2664 1 2926 5 chr1A.!!$R1 2925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 2498 0.442699 CTTAGTCCGTTTGAAGGCGC 59.557 55.0 0.0 0.0 0.00 6.53 F
1215 3913 0.254178 AGTTCAGGATGCTTGCGGAT 59.746 50.0 0.0 0.0 34.76 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1458 4214 0.028902 CATCGTATGGTCGACGCAGA 59.971 55.0 9.92 3.35 42.56 4.26 R
3020 6086 0.034337 TAACGCCTTTGTTCCGCTCT 59.966 50.0 0.00 0.00 33.32 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 2340 2.264455 AGATGCAGTTCCTCAAGGTCT 58.736 47.619 0.00 0.00 36.34 3.85
38 2355 0.818040 GGTCTTGTCCAAACTGCGGT 60.818 55.000 0.00 0.00 0.00 5.68
86 2474 9.859427 TTCAATTGTTGCTATCTTTATTTCCAG 57.141 29.630 5.13 0.00 0.00 3.86
87 2475 7.975616 TCAATTGTTGCTATCTTTATTTCCAGC 59.024 33.333 5.13 0.00 0.00 4.85
88 2476 7.651027 ATTGTTGCTATCTTTATTTCCAGCT 57.349 32.000 0.00 0.00 0.00 4.24
89 2477 7.466746 TTGTTGCTATCTTTATTTCCAGCTT 57.533 32.000 0.00 0.00 0.00 3.74
90 2478 8.574251 TTGTTGCTATCTTTATTTCCAGCTTA 57.426 30.769 0.00 0.00 0.00 3.09
91 2479 7.985476 TGTTGCTATCTTTATTTCCAGCTTAC 58.015 34.615 0.00 0.00 0.00 2.34
92 2480 7.829211 TGTTGCTATCTTTATTTCCAGCTTACT 59.171 33.333 0.00 0.00 0.00 2.24
93 2481 8.678199 GTTGCTATCTTTATTTCCAGCTTACTT 58.322 33.333 0.00 0.00 0.00 2.24
94 2482 9.899661 TTGCTATCTTTATTTCCAGCTTACTTA 57.100 29.630 0.00 0.00 0.00 2.24
95 2483 9.547753 TGCTATCTTTATTTCCAGCTTACTTAG 57.452 33.333 0.00 0.00 0.00 2.18
96 2484 9.549078 GCTATCTTTATTTCCAGCTTACTTAGT 57.451 33.333 0.00 0.00 0.00 2.24
98 2486 8.966069 ATCTTTATTTCCAGCTTACTTAGTCC 57.034 34.615 0.00 0.00 0.00 3.85
99 2487 7.039882 TCTTTATTTCCAGCTTACTTAGTCCG 58.960 38.462 0.00 0.00 0.00 4.79
100 2488 4.820894 ATTTCCAGCTTACTTAGTCCGT 57.179 40.909 0.00 0.00 0.00 4.69
101 2489 4.612264 TTTCCAGCTTACTTAGTCCGTT 57.388 40.909 0.00 0.00 0.00 4.44
102 2490 4.612264 TTCCAGCTTACTTAGTCCGTTT 57.388 40.909 0.00 0.00 0.00 3.60
103 2491 3.921677 TCCAGCTTACTTAGTCCGTTTG 58.078 45.455 0.00 0.00 0.00 2.93
104 2492 3.575256 TCCAGCTTACTTAGTCCGTTTGA 59.425 43.478 0.00 0.00 0.00 2.69
105 2493 4.039488 TCCAGCTTACTTAGTCCGTTTGAA 59.961 41.667 0.00 0.00 0.00 2.69
106 2494 4.389077 CCAGCTTACTTAGTCCGTTTGAAG 59.611 45.833 0.00 0.00 0.00 3.02
107 2495 4.389077 CAGCTTACTTAGTCCGTTTGAAGG 59.611 45.833 0.00 0.00 0.00 3.46
108 2496 3.124806 GCTTACTTAGTCCGTTTGAAGGC 59.875 47.826 0.00 0.00 0.00 4.35
109 2497 1.792006 ACTTAGTCCGTTTGAAGGCG 58.208 50.000 0.00 0.00 0.00 5.52
110 2498 0.442699 CTTAGTCCGTTTGAAGGCGC 59.557 55.000 0.00 0.00 0.00 6.53
111 2499 1.286354 TTAGTCCGTTTGAAGGCGCG 61.286 55.000 0.00 0.00 0.00 6.86
112 2500 2.424705 TAGTCCGTTTGAAGGCGCGT 62.425 55.000 8.43 0.00 0.00 6.01
113 2501 3.039588 TCCGTTTGAAGGCGCGTC 61.040 61.111 0.21 0.21 0.00 5.19
114 2502 4.424430 CCGTTTGAAGGCGCGTCG 62.424 66.667 8.43 1.69 0.00 5.12
115 2503 3.399770 CGTTTGAAGGCGCGTCGA 61.400 61.111 8.43 0.00 0.00 4.20
116 2504 2.470286 GTTTGAAGGCGCGTCGAG 59.530 61.111 8.43 0.00 0.00 4.04
117 2505 2.019951 GTTTGAAGGCGCGTCGAGA 61.020 57.895 8.43 0.00 0.00 4.04
118 2506 1.300311 TTTGAAGGCGCGTCGAGAA 60.300 52.632 8.43 0.00 0.00 2.87
119 2507 0.876777 TTTGAAGGCGCGTCGAGAAA 60.877 50.000 8.43 3.83 0.00 2.52
120 2508 0.876777 TTGAAGGCGCGTCGAGAAAA 60.877 50.000 8.43 0.00 0.00 2.29
121 2509 0.876777 TGAAGGCGCGTCGAGAAAAA 60.877 50.000 8.43 0.00 0.00 1.94
142 2530 6.882768 AAAAGAGAGTAATCTCCACATCCT 57.117 37.500 16.25 0.00 41.26 3.24
143 2531 6.882768 AAAGAGAGTAATCTCCACATCCTT 57.117 37.500 16.25 0.01 41.26 3.36
144 2532 6.882768 AAGAGAGTAATCTCCACATCCTTT 57.117 37.500 16.25 0.00 41.26 3.11
145 2533 6.882768 AGAGAGTAATCTCCACATCCTTTT 57.117 37.500 16.25 0.00 41.26 2.27
146 2534 7.979786 AGAGAGTAATCTCCACATCCTTTTA 57.020 36.000 16.25 0.00 41.26 1.52
147 2535 8.560124 AGAGAGTAATCTCCACATCCTTTTAT 57.440 34.615 16.25 0.00 41.26 1.40
148 2536 8.997734 AGAGAGTAATCTCCACATCCTTTTATT 58.002 33.333 16.25 0.00 41.26 1.40
149 2537 9.620259 GAGAGTAATCTCCACATCCTTTTATTT 57.380 33.333 9.05 0.00 41.26 1.40
150 2538 9.620259 AGAGTAATCTCCACATCCTTTTATTTC 57.380 33.333 0.00 0.00 41.26 2.17
186 2574 3.751518 TCTTGCCCTTTCTTCTTACCAC 58.248 45.455 0.00 0.00 0.00 4.16
189 2577 4.281898 TGCCCTTTCTTCTTACCACTAC 57.718 45.455 0.00 0.00 0.00 2.73
219 2607 6.060788 AGCAAAGGCAATGGAAATTTTGTTA 58.939 32.000 0.00 0.00 44.61 2.41
257 2647 5.128008 GCTGGTAATTAAGGGCATTTGGTTA 59.872 40.000 0.00 0.00 0.00 2.85
352 2750 5.186797 CCAAATTACCATAACAAGCCTTCCA 59.813 40.000 0.00 0.00 0.00 3.53
435 2833 5.357742 AAAGTTTGCTGGACAAGGATTTT 57.642 34.783 0.00 0.00 40.06 1.82
485 2883 3.156753 GAGCAAAGCGAAAACTCGAATC 58.843 45.455 0.00 0.00 34.64 2.52
632 3030 9.145865 GAAAAGTCTCTCTATGTGTCCTAAAAG 57.854 37.037 0.00 0.00 0.00 2.27
1060 3752 3.309296 AGCCGATTCATCTCCTTCCTTA 58.691 45.455 0.00 0.00 0.00 2.69
1215 3913 0.254178 AGTTCAGGATGCTTGCGGAT 59.746 50.000 0.00 0.00 34.76 4.18
1226 3924 0.747644 CTTGCGGATGCCATGTACCA 60.748 55.000 0.00 0.00 41.78 3.25
1442 4198 3.759618 ACGGAGTTTGTTGTTCTTTTGGA 59.240 39.130 0.00 0.00 37.78 3.53
1458 4214 0.756294 TGGATGGATGCGACCGTATT 59.244 50.000 0.00 0.00 0.00 1.89
1654 4416 1.557099 TGTATGCAAGGACGAGAGGT 58.443 50.000 0.00 0.00 0.00 3.85
1735 4500 5.292765 CAGACCATGGTAGTATCATGTCAC 58.707 45.833 19.80 11.44 40.07 3.67
1791 4556 0.343372 TGGAGGAGGAGTATTGGGCT 59.657 55.000 0.00 0.00 0.00 5.19
1806 4571 3.439857 TGGGCTAAGTTCTGCTCATTT 57.560 42.857 0.00 0.00 34.40 2.32
1820 4588 1.140161 CATTTGTGGCGAGCATGGG 59.860 57.895 0.00 0.00 0.00 4.00
1923 4691 2.099921 CCTGTCATACGAGGAGTTCAGG 59.900 54.545 0.00 0.00 35.90 3.86
1940 4741 2.584608 GTATCCGGCACAGCACCT 59.415 61.111 0.00 0.00 0.00 4.00
2059 4860 0.741915 GAACGTTTGTTTCTGGGCCA 59.258 50.000 5.85 5.85 38.78 5.36
2422 5223 1.149288 TGGTGGAACAGAGTACTCCCT 59.851 52.381 19.38 3.96 41.80 4.20
2426 5227 3.071167 GTGGAACAGAGTACTCCCTTGTT 59.929 47.826 22.19 22.19 41.80 2.83
2476 5284 2.438868 AGGCCTTTTGATTTGAACGC 57.561 45.000 0.00 0.00 0.00 4.84
2499 5310 4.402793 CCTTCTACAGGGATTTCGAAGAGA 59.597 45.833 0.00 0.00 39.39 3.10
2709 5676 7.661847 ACATAGGAAGTTTTTCAGTGACCTAAG 59.338 37.037 7.32 6.12 34.90 2.18
2726 5695 6.101650 ACCTAAGCCTCTTGGAAAAATTTG 57.898 37.500 0.00 0.00 34.57 2.32
2727 5696 5.602561 ACCTAAGCCTCTTGGAAAAATTTGT 59.397 36.000 0.00 0.00 34.57 2.83
2728 5697 6.780522 ACCTAAGCCTCTTGGAAAAATTTGTA 59.219 34.615 0.00 0.00 34.57 2.41
2863 5926 4.921547 TCTAAGAAATGATCGTGAGACCG 58.078 43.478 0.00 0.00 46.97 4.79
2864 5927 3.594603 AAGAAATGATCGTGAGACCGT 57.405 42.857 0.00 0.00 46.97 4.83
2872 5935 1.066752 CGTGAGACCGTCAACACCA 59.933 57.895 17.24 0.54 36.74 4.17
2875 5938 0.034756 TGAGACCGTCAACACCATGG 59.965 55.000 11.19 11.19 29.64 3.66
2876 5939 0.673644 GAGACCGTCAACACCATGGG 60.674 60.000 18.09 7.72 0.00 4.00
2906 5972 2.045634 GTGAGCATGCTGGCCTGA 60.046 61.111 28.27 0.00 0.00 3.86
2907 5973 1.453379 GTGAGCATGCTGGCCTGAT 60.453 57.895 28.27 0.00 0.00 2.90
2951 6017 4.381505 CGGGTTCCCCATTTTGTAAGAATG 60.382 45.833 1.93 0.00 45.83 2.67
2966 6032 6.314018 TGTAAGAATGCTGCGAGTAATTTTG 58.686 36.000 0.00 0.00 0.00 2.44
2967 6033 4.361451 AGAATGCTGCGAGTAATTTTGG 57.639 40.909 0.00 0.00 0.00 3.28
2968 6034 3.758554 AGAATGCTGCGAGTAATTTTGGT 59.241 39.130 0.00 0.00 0.00 3.67
2969 6035 4.218417 AGAATGCTGCGAGTAATTTTGGTT 59.782 37.500 0.00 0.00 0.00 3.67
2970 6036 4.519540 ATGCTGCGAGTAATTTTGGTTT 57.480 36.364 0.00 0.00 0.00 3.27
2971 6037 4.314740 TGCTGCGAGTAATTTTGGTTTT 57.685 36.364 0.00 0.00 0.00 2.43
2972 6038 4.688021 TGCTGCGAGTAATTTTGGTTTTT 58.312 34.783 0.00 0.00 0.00 1.94
2995 6061 2.105006 TTGAGAGATCCAGCAGTTGC 57.895 50.000 0.00 0.00 42.49 4.17
3009 6075 4.843220 GCAGTTGCTGGCTTTCATATAT 57.157 40.909 0.00 0.00 38.21 0.86
3010 6076 5.192327 GCAGTTGCTGGCTTTCATATATT 57.808 39.130 0.00 0.00 38.21 1.28
3011 6077 6.317789 GCAGTTGCTGGCTTTCATATATTA 57.682 37.500 0.00 0.00 38.21 0.98
3012 6078 6.738114 GCAGTTGCTGGCTTTCATATATTAA 58.262 36.000 0.00 0.00 38.21 1.40
3013 6079 6.860023 GCAGTTGCTGGCTTTCATATATTAAG 59.140 38.462 0.00 1.57 38.21 1.85
3014 6080 6.860023 CAGTTGCTGGCTTTCATATATTAAGC 59.140 38.462 16.06 16.06 42.65 3.09
3015 6081 6.547141 AGTTGCTGGCTTTCATATATTAAGCA 59.453 34.615 21.89 8.25 44.60 3.91
3016 6082 7.232127 AGTTGCTGGCTTTCATATATTAAGCAT 59.768 33.333 21.89 5.16 44.60 3.79
3017 6083 8.514594 GTTGCTGGCTTTCATATATTAAGCATA 58.485 33.333 21.89 13.67 44.60 3.14
3018 6084 8.634335 TGCTGGCTTTCATATATTAAGCATAA 57.366 30.769 21.89 11.65 44.60 1.90
3019 6085 8.733458 TGCTGGCTTTCATATATTAAGCATAAG 58.267 33.333 21.89 17.72 44.60 1.73
3020 6086 8.950210 GCTGGCTTTCATATATTAAGCATAAGA 58.050 33.333 21.89 7.35 44.60 2.10
3026 6092 8.932945 TTCATATATTAAGCATAAGAGAGCGG 57.067 34.615 0.00 0.00 35.48 5.52
3027 6093 8.293699 TCATATATTAAGCATAAGAGAGCGGA 57.706 34.615 0.00 0.00 35.48 5.54
3028 6094 8.749354 TCATATATTAAGCATAAGAGAGCGGAA 58.251 33.333 0.00 0.00 35.48 4.30
3029 6095 8.812329 CATATATTAAGCATAAGAGAGCGGAAC 58.188 37.037 0.00 0.00 35.48 3.62
3030 6096 4.465632 TTAAGCATAAGAGAGCGGAACA 57.534 40.909 0.00 0.00 35.48 3.18
3031 6097 3.334583 AAGCATAAGAGAGCGGAACAA 57.665 42.857 0.00 0.00 35.48 2.83
3032 6098 3.334583 AGCATAAGAGAGCGGAACAAA 57.665 42.857 0.00 0.00 35.48 2.83
3033 6099 3.265791 AGCATAAGAGAGCGGAACAAAG 58.734 45.455 0.00 0.00 35.48 2.77
3034 6100 2.352960 GCATAAGAGAGCGGAACAAAGG 59.647 50.000 0.00 0.00 0.00 3.11
3035 6101 2.094762 TAAGAGAGCGGAACAAAGGC 57.905 50.000 0.00 0.00 0.00 4.35
3036 6102 0.951040 AAGAGAGCGGAACAAAGGCG 60.951 55.000 0.00 0.00 0.00 5.52
3037 6103 1.668151 GAGAGCGGAACAAAGGCGT 60.668 57.895 0.00 0.00 0.00 5.68
3038 6104 1.227853 AGAGCGGAACAAAGGCGTT 60.228 52.632 0.00 0.00 0.00 4.84
3039 6105 0.034337 AGAGCGGAACAAAGGCGTTA 59.966 50.000 0.00 0.00 0.00 3.18
3040 6106 0.165295 GAGCGGAACAAAGGCGTTAC 59.835 55.000 0.00 0.00 0.00 2.50
3041 6107 0.250166 AGCGGAACAAAGGCGTTACT 60.250 50.000 0.00 0.00 0.00 2.24
3042 6108 1.001181 AGCGGAACAAAGGCGTTACTA 59.999 47.619 0.00 0.00 0.00 1.82
3043 6109 1.127397 GCGGAACAAAGGCGTTACTAC 59.873 52.381 0.00 0.00 0.00 2.73
3044 6110 1.728425 CGGAACAAAGGCGTTACTACC 59.272 52.381 0.00 0.00 0.00 3.18
3045 6111 1.728425 GGAACAAAGGCGTTACTACCG 59.272 52.381 0.00 0.00 0.00 4.02
3046 6112 2.407090 GAACAAAGGCGTTACTACCGT 58.593 47.619 0.00 0.00 0.00 4.83
3047 6113 1.787012 ACAAAGGCGTTACTACCGTG 58.213 50.000 0.00 0.00 0.00 4.94
3048 6114 1.340889 ACAAAGGCGTTACTACCGTGA 59.659 47.619 0.00 0.00 0.00 4.35
3049 6115 2.028748 ACAAAGGCGTTACTACCGTGAT 60.029 45.455 0.00 0.00 0.00 3.06
3050 6116 2.573941 AAGGCGTTACTACCGTGATC 57.426 50.000 0.00 0.00 0.00 2.92
3051 6117 1.466856 AGGCGTTACTACCGTGATCA 58.533 50.000 0.00 0.00 0.00 2.92
3052 6118 1.820519 AGGCGTTACTACCGTGATCAA 59.179 47.619 0.00 0.00 0.00 2.57
3053 6119 2.159282 AGGCGTTACTACCGTGATCAAG 60.159 50.000 0.00 0.00 0.00 3.02
3054 6120 2.416431 GGCGTTACTACCGTGATCAAGT 60.416 50.000 7.88 5.53 0.00 3.16
3055 6121 3.248266 GCGTTACTACCGTGATCAAGTT 58.752 45.455 7.88 0.00 0.00 2.66
3056 6122 4.414852 GCGTTACTACCGTGATCAAGTTA 58.585 43.478 7.88 0.00 0.00 2.24
3057 6123 5.039333 GCGTTACTACCGTGATCAAGTTAT 58.961 41.667 7.88 0.00 0.00 1.89
3058 6124 5.172771 GCGTTACTACCGTGATCAAGTTATC 59.827 44.000 7.88 0.00 0.00 1.75
3059 6125 5.394613 CGTTACTACCGTGATCAAGTTATCG 59.605 44.000 7.88 1.19 0.00 2.92
3060 6126 3.703420 ACTACCGTGATCAAGTTATCGC 58.297 45.455 7.88 0.00 33.85 4.58
3065 6131 3.825498 GTGATCAAGTTATCGCGACAG 57.175 47.619 12.93 0.00 0.00 3.51
3066 6132 2.034507 GTGATCAAGTTATCGCGACAGC 60.035 50.000 12.93 0.09 40.74 4.40
3076 6142 2.879907 GCGACAGCGTGGGTAGTA 59.120 61.111 0.00 0.00 40.36 1.82
3077 6143 1.226603 GCGACAGCGTGGGTAGTAG 60.227 63.158 0.00 0.00 40.36 2.57
3078 6144 1.226603 CGACAGCGTGGGTAGTAGC 60.227 63.158 0.00 0.00 0.00 3.58
3079 6145 1.888018 GACAGCGTGGGTAGTAGCA 59.112 57.895 1.13 0.00 0.00 3.49
3080 6146 0.460311 GACAGCGTGGGTAGTAGCAT 59.540 55.000 1.13 0.00 0.00 3.79
3081 6147 0.175760 ACAGCGTGGGTAGTAGCATG 59.824 55.000 1.13 0.00 0.00 4.06
3082 6148 0.459899 CAGCGTGGGTAGTAGCATGA 59.540 55.000 0.00 0.00 0.00 3.07
3083 6149 0.747255 AGCGTGGGTAGTAGCATGAG 59.253 55.000 0.00 0.00 0.00 2.90
3084 6150 0.460311 GCGTGGGTAGTAGCATGAGT 59.540 55.000 0.00 0.00 0.00 3.41
3085 6151 1.134788 GCGTGGGTAGTAGCATGAGTT 60.135 52.381 0.00 0.00 0.00 3.01
3086 6152 2.677037 GCGTGGGTAGTAGCATGAGTTT 60.677 50.000 0.00 0.00 0.00 2.66
3087 6153 3.429822 GCGTGGGTAGTAGCATGAGTTTA 60.430 47.826 0.00 0.00 0.00 2.01
3088 6154 4.751060 CGTGGGTAGTAGCATGAGTTTAA 58.249 43.478 0.00 0.00 0.00 1.52
3089 6155 5.172934 CGTGGGTAGTAGCATGAGTTTAAA 58.827 41.667 0.00 0.00 0.00 1.52
3090 6156 5.640357 CGTGGGTAGTAGCATGAGTTTAAAA 59.360 40.000 0.00 0.00 0.00 1.52
3091 6157 6.401796 CGTGGGTAGTAGCATGAGTTTAAAAC 60.402 42.308 0.00 0.00 0.00 2.43
3092 6158 5.941647 TGGGTAGTAGCATGAGTTTAAAACC 59.058 40.000 0.00 0.00 0.00 3.27
3093 6159 5.064325 GGGTAGTAGCATGAGTTTAAAACCG 59.936 44.000 0.00 0.00 0.00 4.44
3094 6160 5.064325 GGTAGTAGCATGAGTTTAAAACCGG 59.936 44.000 0.00 0.00 0.00 5.28
3095 6161 4.901868 AGTAGCATGAGTTTAAAACCGGA 58.098 39.130 9.46 0.00 0.00 5.14
3096 6162 5.310451 AGTAGCATGAGTTTAAAACCGGAA 58.690 37.500 9.46 0.00 0.00 4.30
3097 6163 4.499037 AGCATGAGTTTAAAACCGGAAC 57.501 40.909 9.46 0.53 0.00 3.62
3098 6164 4.142038 AGCATGAGTTTAAAACCGGAACT 58.858 39.130 9.46 6.86 36.40 3.01
3099 6165 4.583073 AGCATGAGTTTAAAACCGGAACTT 59.417 37.500 9.46 0.00 34.02 2.66
3100 6166 5.766174 AGCATGAGTTTAAAACCGGAACTTA 59.234 36.000 9.46 3.91 34.02 2.24
3101 6167 5.854866 GCATGAGTTTAAAACCGGAACTTAC 59.145 40.000 9.46 0.00 34.02 2.34
3102 6168 6.513720 GCATGAGTTTAAAACCGGAACTTACA 60.514 38.462 9.46 2.56 34.02 2.41
3103 6169 6.607735 TGAGTTTAAAACCGGAACTTACAG 57.392 37.500 9.46 0.00 34.02 2.74
3104 6170 5.528320 TGAGTTTAAAACCGGAACTTACAGG 59.472 40.000 9.46 0.00 34.02 4.00
3105 6171 4.276678 AGTTTAAAACCGGAACTTACAGGC 59.723 41.667 9.46 0.00 29.81 4.85
3106 6172 1.612676 AAAACCGGAACTTACAGGCC 58.387 50.000 9.46 0.00 0.00 5.19
3107 6173 0.251033 AAACCGGAACTTACAGGCCC 60.251 55.000 9.46 0.00 0.00 5.80
3108 6174 1.131928 AACCGGAACTTACAGGCCCT 61.132 55.000 9.46 0.00 0.00 5.19
3109 6175 1.078426 CCGGAACTTACAGGCCCTG 60.078 63.158 9.83 9.83 37.52 4.45
3110 6176 1.078426 CGGAACTTACAGGCCCTGG 60.078 63.158 16.70 0.00 35.51 4.45
3111 6177 1.303282 GGAACTTACAGGCCCTGGG 59.697 63.158 16.70 8.86 35.51 4.45
3112 6178 1.303282 GAACTTACAGGCCCTGGGG 59.697 63.158 16.70 6.99 35.51 4.96
3127 6193 4.716977 GGGGACAGGGTCGGGACT 62.717 72.222 0.00 0.00 32.65 3.85
3128 6194 2.606826 GGGACAGGGTCGGGACTT 60.607 66.667 0.00 0.00 32.65 3.01
3129 6195 2.663196 GGACAGGGTCGGGACTTG 59.337 66.667 0.00 1.32 32.65 3.16
3130 6196 1.911766 GGACAGGGTCGGGACTTGA 60.912 63.158 9.64 0.00 32.65 3.02
3131 6197 1.477685 GGACAGGGTCGGGACTTGAA 61.478 60.000 9.64 0.00 32.65 2.69
3132 6198 0.395312 GACAGGGTCGGGACTTGAAA 59.605 55.000 9.64 0.00 0.00 2.69
3133 6199 0.841289 ACAGGGTCGGGACTTGAAAA 59.159 50.000 9.64 0.00 0.00 2.29
3134 6200 1.423921 ACAGGGTCGGGACTTGAAAAT 59.576 47.619 9.64 0.00 0.00 1.82
3135 6201 2.640826 ACAGGGTCGGGACTTGAAAATA 59.359 45.455 9.64 0.00 0.00 1.40
3136 6202 3.265995 ACAGGGTCGGGACTTGAAAATAT 59.734 43.478 9.64 0.00 0.00 1.28
3137 6203 3.627577 CAGGGTCGGGACTTGAAAATATG 59.372 47.826 0.00 0.00 0.00 1.78
3138 6204 2.357952 GGGTCGGGACTTGAAAATATGC 59.642 50.000 0.00 0.00 0.00 3.14
3139 6205 3.279434 GGTCGGGACTTGAAAATATGCT 58.721 45.455 0.00 0.00 0.00 3.79
3140 6206 4.448210 GGTCGGGACTTGAAAATATGCTA 58.552 43.478 0.00 0.00 0.00 3.49
3141 6207 5.063880 GGTCGGGACTTGAAAATATGCTAT 58.936 41.667 0.00 0.00 0.00 2.97
3142 6208 6.228258 GGTCGGGACTTGAAAATATGCTATA 58.772 40.000 0.00 0.00 0.00 1.31
3143 6209 6.708949 GGTCGGGACTTGAAAATATGCTATAA 59.291 38.462 0.00 0.00 0.00 0.98
3144 6210 7.390718 GGTCGGGACTTGAAAATATGCTATAAT 59.609 37.037 0.00 0.00 0.00 1.28
3145 6211 8.443937 GTCGGGACTTGAAAATATGCTATAATC 58.556 37.037 0.00 0.00 0.00 1.75
3146 6212 8.375506 TCGGGACTTGAAAATATGCTATAATCT 58.624 33.333 0.00 0.00 0.00 2.40
3147 6213 8.660373 CGGGACTTGAAAATATGCTATAATCTC 58.340 37.037 0.00 0.00 0.00 2.75
3148 6214 9.507329 GGGACTTGAAAATATGCTATAATCTCA 57.493 33.333 0.00 0.00 0.00 3.27
3154 6220 9.676861 TGAAAATATGCTATAATCTCATCCTGG 57.323 33.333 0.00 0.00 0.00 4.45
3155 6221 9.896645 GAAAATATGCTATAATCTCATCCTGGA 57.103 33.333 0.00 0.00 0.00 3.86
3158 6224 5.946942 TGCTATAATCTCATCCTGGATCC 57.053 43.478 6.13 4.20 0.00 3.36
3159 6225 4.718774 TGCTATAATCTCATCCTGGATCCC 59.281 45.833 9.90 0.00 0.00 3.85
3160 6226 4.102367 GCTATAATCTCATCCTGGATCCCC 59.898 50.000 9.90 0.00 0.00 4.81
3161 6227 1.356124 AATCTCATCCTGGATCCCCG 58.644 55.000 9.90 0.00 34.29 5.73
3162 6228 0.489117 ATCTCATCCTGGATCCCCGA 59.511 55.000 9.90 4.68 34.29 5.14
3163 6229 0.178950 TCTCATCCTGGATCCCCGAG 60.179 60.000 9.90 10.48 34.29 4.63
3164 6230 0.178950 CTCATCCTGGATCCCCGAGA 60.179 60.000 9.90 0.66 34.29 4.04
3165 6231 0.178950 TCATCCTGGATCCCCGAGAG 60.179 60.000 9.90 0.00 34.29 3.20
3177 6243 4.303257 CGAGAGGGGTTTCAAGGC 57.697 61.111 0.00 0.00 0.00 4.35
3178 6244 1.374947 CGAGAGGGGTTTCAAGGCA 59.625 57.895 0.00 0.00 0.00 4.75
3179 6245 0.955919 CGAGAGGGGTTTCAAGGCAC 60.956 60.000 0.00 0.00 0.00 5.01
3180 6246 0.609406 GAGAGGGGTTTCAAGGCACC 60.609 60.000 0.00 0.00 0.00 5.01
3181 6247 1.971695 GAGGGGTTTCAAGGCACCG 60.972 63.158 0.00 0.00 33.34 4.94
3182 6248 3.680786 GGGGTTTCAAGGCACCGC 61.681 66.667 0.00 0.00 38.68 5.68
3183 6249 4.038080 GGGTTTCAAGGCACCGCG 62.038 66.667 0.00 0.00 33.34 6.46
3184 6250 4.700365 GGTTTCAAGGCACCGCGC 62.700 66.667 0.00 0.00 41.28 6.86
3185 6251 3.660111 GTTTCAAGGCACCGCGCT 61.660 61.111 5.56 0.00 41.91 5.92
3186 6252 3.353836 TTTCAAGGCACCGCGCTC 61.354 61.111 5.56 0.00 41.91 5.03
3200 6266 4.486503 GCTCCAGCCAGCCTCCAG 62.487 72.222 0.00 0.00 32.76 3.86
3201 6267 2.686470 CTCCAGCCAGCCTCCAGA 60.686 66.667 0.00 0.00 0.00 3.86
3202 6268 2.686470 TCCAGCCAGCCTCCAGAG 60.686 66.667 0.00 0.00 0.00 3.35
3212 6278 3.679935 CCTCCAGAGGTCTCAGTCA 57.320 57.895 5.47 0.00 43.61 3.41
3213 6279 1.181786 CCTCCAGAGGTCTCAGTCAC 58.818 60.000 5.47 0.00 43.61 3.67
3214 6280 0.808125 CTCCAGAGGTCTCAGTCACG 59.192 60.000 0.55 0.00 0.00 4.35
3215 6281 0.609406 TCCAGAGGTCTCAGTCACGG 60.609 60.000 0.55 0.00 0.00 4.94
3216 6282 1.599606 CCAGAGGTCTCAGTCACGGG 61.600 65.000 0.55 0.00 0.00 5.28
3217 6283 0.896019 CAGAGGTCTCAGTCACGGGT 60.896 60.000 0.55 0.00 0.00 5.28
3218 6284 0.896019 AGAGGTCTCAGTCACGGGTG 60.896 60.000 0.55 0.00 0.00 4.61
3219 6285 0.894184 GAGGTCTCAGTCACGGGTGA 60.894 60.000 0.00 0.00 37.24 4.02
3220 6286 0.251832 AGGTCTCAGTCACGGGTGAT 60.252 55.000 4.63 0.00 42.18 3.06
3221 6287 0.173708 GGTCTCAGTCACGGGTGATC 59.826 60.000 4.63 0.00 42.18 2.92
3222 6288 0.179161 GTCTCAGTCACGGGTGATCG 60.179 60.000 4.63 0.00 42.18 3.69
3223 6289 1.517257 CTCAGTCACGGGTGATCGC 60.517 63.158 4.63 0.00 42.18 4.58
3224 6290 2.509336 CAGTCACGGGTGATCGCC 60.509 66.667 17.45 17.45 42.18 5.54
3225 6291 4.129737 AGTCACGGGTGATCGCCG 62.130 66.667 18.92 15.77 42.18 6.46
3232 6298 2.824041 GGTGATCGCCGCCACAAT 60.824 61.111 10.09 0.00 44.82 2.71
3233 6299 2.406616 GGTGATCGCCGCCACAATT 61.407 57.895 10.09 0.00 44.82 2.32
3234 6300 1.226379 GTGATCGCCGCCACAATTG 60.226 57.895 3.24 3.24 33.72 2.32
3235 6301 1.376553 TGATCGCCGCCACAATTGA 60.377 52.632 13.59 0.00 0.00 2.57
3236 6302 1.353103 GATCGCCGCCACAATTGAG 59.647 57.895 13.59 3.79 0.00 3.02
3237 6303 1.078497 ATCGCCGCCACAATTGAGA 60.078 52.632 13.59 0.42 0.00 3.27
3238 6304 0.464373 ATCGCCGCCACAATTGAGAT 60.464 50.000 13.59 2.68 0.00 2.75
3239 6305 1.089481 TCGCCGCCACAATTGAGATC 61.089 55.000 13.59 0.00 0.00 2.75
3240 6306 1.368345 CGCCGCCACAATTGAGATCA 61.368 55.000 13.59 0.00 0.00 2.92
3241 6307 0.099436 GCCGCCACAATTGAGATCAC 59.901 55.000 13.59 0.00 0.00 3.06
3242 6308 0.734889 CCGCCACAATTGAGATCACC 59.265 55.000 13.59 0.00 0.00 4.02
3243 6309 0.374758 CGCCACAATTGAGATCACCG 59.625 55.000 13.59 1.22 0.00 4.94
3244 6310 1.453155 GCCACAATTGAGATCACCGT 58.547 50.000 13.59 0.00 0.00 4.83
3245 6311 1.812571 GCCACAATTGAGATCACCGTT 59.187 47.619 13.59 0.00 0.00 4.44
3246 6312 2.414559 GCCACAATTGAGATCACCGTTG 60.415 50.000 13.59 0.00 0.00 4.10
3247 6313 3.073678 CCACAATTGAGATCACCGTTGA 58.926 45.455 13.59 0.00 35.73 3.18
3248 6314 3.125829 CCACAATTGAGATCACCGTTGAG 59.874 47.826 13.59 4.32 34.35 3.02
3250 6316 3.007940 ACAATTGAGATCACCGTTGAGGA 59.992 43.478 13.59 0.00 45.00 3.71
3251 6317 4.194640 CAATTGAGATCACCGTTGAGGAT 58.805 43.478 0.00 0.00 45.00 3.24
3252 6318 2.967599 TGAGATCACCGTTGAGGATG 57.032 50.000 0.00 0.00 45.00 3.51
3253 6319 2.456577 TGAGATCACCGTTGAGGATGA 58.543 47.619 0.00 0.00 45.00 2.92
3254 6320 2.428530 TGAGATCACCGTTGAGGATGAG 59.571 50.000 0.00 0.00 45.00 2.90
3255 6321 1.759445 AGATCACCGTTGAGGATGAGG 59.241 52.381 0.00 0.00 45.00 3.86
3256 6322 0.833287 ATCACCGTTGAGGATGAGGG 59.167 55.000 0.00 0.00 45.00 4.30
3257 6323 1.450312 CACCGTTGAGGATGAGGGC 60.450 63.158 0.00 0.00 45.00 5.19
3258 6324 1.613630 ACCGTTGAGGATGAGGGCT 60.614 57.895 0.00 0.00 45.00 5.19
3259 6325 1.201429 ACCGTTGAGGATGAGGGCTT 61.201 55.000 0.00 0.00 45.00 4.35
3260 6326 0.745845 CCGTTGAGGATGAGGGCTTG 60.746 60.000 0.00 0.00 45.00 4.01
3261 6327 0.036010 CGTTGAGGATGAGGGCTTGT 60.036 55.000 0.00 0.00 0.00 3.16
3262 6328 1.743996 GTTGAGGATGAGGGCTTGTC 58.256 55.000 0.00 0.00 0.00 3.18
3263 6329 0.250234 TTGAGGATGAGGGCTTGTCG 59.750 55.000 0.00 0.00 0.00 4.35
3264 6330 0.904865 TGAGGATGAGGGCTTGTCGT 60.905 55.000 0.00 0.00 0.00 4.34
3265 6331 0.460987 GAGGATGAGGGCTTGTCGTG 60.461 60.000 0.00 0.00 0.00 4.35
3266 6332 1.450312 GGATGAGGGCTTGTCGTGG 60.450 63.158 0.00 0.00 0.00 4.94
3267 6333 1.596934 GATGAGGGCTTGTCGTGGA 59.403 57.895 0.00 0.00 0.00 4.02
3268 6334 0.036388 GATGAGGGCTTGTCGTGGAA 60.036 55.000 0.00 0.00 0.00 3.53
3269 6335 0.400213 ATGAGGGCTTGTCGTGGAAA 59.600 50.000 0.00 0.00 0.00 3.13
3270 6336 0.534203 TGAGGGCTTGTCGTGGAAAC 60.534 55.000 0.00 0.00 0.00 2.78
3271 6337 0.534203 GAGGGCTTGTCGTGGAAACA 60.534 55.000 0.00 0.00 38.70 2.83
3272 6338 0.110486 AGGGCTTGTCGTGGAAACAT 59.890 50.000 0.00 0.00 46.14 2.71
3273 6339 0.521735 GGGCTTGTCGTGGAAACATC 59.478 55.000 0.00 0.00 46.14 3.06
3274 6340 1.523758 GGCTTGTCGTGGAAACATCT 58.476 50.000 0.00 0.00 46.14 2.90
3275 6341 1.880027 GGCTTGTCGTGGAAACATCTT 59.120 47.619 0.00 0.00 46.14 2.40
3276 6342 2.350772 GGCTTGTCGTGGAAACATCTTG 60.351 50.000 0.00 0.00 46.14 3.02
3277 6343 2.918131 GCTTGTCGTGGAAACATCTTGC 60.918 50.000 0.00 0.00 46.14 4.01
3278 6344 1.960417 TGTCGTGGAAACATCTTGCA 58.040 45.000 0.00 0.00 46.14 4.08
3279 6345 2.503331 TGTCGTGGAAACATCTTGCAT 58.497 42.857 0.00 0.00 46.14 3.96
3280 6346 2.884012 TGTCGTGGAAACATCTTGCATT 59.116 40.909 0.00 0.00 46.14 3.56
3281 6347 3.236816 GTCGTGGAAACATCTTGCATTG 58.763 45.455 0.00 0.00 46.14 2.82
3282 6348 1.987770 CGTGGAAACATCTTGCATTGC 59.012 47.619 0.46 0.46 46.14 3.56
3283 6349 1.987770 GTGGAAACATCTTGCATTGCG 59.012 47.619 3.84 0.00 46.14 4.85
3284 6350 0.994263 GGAAACATCTTGCATTGCGC 59.006 50.000 0.00 0.00 42.89 6.09
3285 6351 1.403249 GGAAACATCTTGCATTGCGCT 60.403 47.619 9.73 0.00 43.06 5.92
3286 6352 1.916000 GAAACATCTTGCATTGCGCTC 59.084 47.619 9.73 0.00 43.06 5.03
3287 6353 0.171903 AACATCTTGCATTGCGCTCC 59.828 50.000 9.73 0.00 43.06 4.70
3288 6354 0.679002 ACATCTTGCATTGCGCTCCT 60.679 50.000 9.73 0.00 43.06 3.69
3289 6355 0.454600 CATCTTGCATTGCGCTCCTT 59.545 50.000 9.73 0.00 43.06 3.36
3290 6356 0.737219 ATCTTGCATTGCGCTCCTTC 59.263 50.000 9.73 0.00 43.06 3.46
3291 6357 1.138247 CTTGCATTGCGCTCCTTCC 59.862 57.895 9.73 0.00 43.06 3.46
3292 6358 1.588824 CTTGCATTGCGCTCCTTCCA 61.589 55.000 9.73 0.00 43.06 3.53
3293 6359 1.588824 TTGCATTGCGCTCCTTCCAG 61.589 55.000 9.73 0.00 43.06 3.86
3356 6422 5.049928 AGATACTGGCAAGTAGCACCTCG 62.050 52.174 18.47 0.00 45.82 4.63
3363 6430 2.603560 GCAAGTAGCACCTCGATACAAC 59.396 50.000 0.00 0.00 44.79 3.32
3367 6434 5.909621 AGTAGCACCTCGATACAACTTTA 57.090 39.130 0.00 0.00 0.00 1.85
3368 6435 5.892568 AGTAGCACCTCGATACAACTTTAG 58.107 41.667 0.00 0.00 0.00 1.85
3369 6436 3.522553 AGCACCTCGATACAACTTTAGC 58.477 45.455 0.00 0.00 0.00 3.09
3370 6437 3.195825 AGCACCTCGATACAACTTTAGCT 59.804 43.478 0.00 0.00 0.00 3.32
3371 6438 3.307242 GCACCTCGATACAACTTTAGCTG 59.693 47.826 0.00 0.00 0.00 4.24
3373 6440 2.866762 CCTCGATACAACTTTAGCTGCC 59.133 50.000 0.00 0.00 0.00 4.85
3374 6441 3.430929 CCTCGATACAACTTTAGCTGCCT 60.431 47.826 0.00 0.00 0.00 4.75
3377 6444 2.559698 TACAACTTTAGCTGCCTGCA 57.440 45.000 0.00 0.00 45.94 4.41
3389 6492 2.695147 GCTGCCTGCATAATTAAGGGTT 59.305 45.455 4.27 0.00 42.31 4.11
3390 6493 3.243535 GCTGCCTGCATAATTAAGGGTTC 60.244 47.826 4.27 0.00 42.31 3.62
3395 6498 4.402155 CCTGCATAATTAAGGGTTCTTGCA 59.598 41.667 6.10 6.10 34.59 4.08
3398 6501 5.421693 TGCATAATTAAGGGTTCTTGCACAT 59.578 36.000 2.76 0.00 34.59 3.21
3399 6502 6.605194 TGCATAATTAAGGGTTCTTGCACATA 59.395 34.615 2.76 0.00 34.59 2.29
3400 6503 6.918022 GCATAATTAAGGGTTCTTGCACATAC 59.082 38.462 0.00 0.00 34.59 2.39
3401 6504 5.560966 AATTAAGGGTTCTTGCACATACG 57.439 39.130 0.00 0.00 34.59 3.06
3402 6505 1.165270 AAGGGTTCTTGCACATACGC 58.835 50.000 0.00 0.00 0.00 4.42
3403 6506 0.324943 AGGGTTCTTGCACATACGCT 59.675 50.000 5.37 5.37 0.00 5.07
3406 9287 1.661112 GGTTCTTGCACATACGCTCTC 59.339 52.381 0.00 0.00 0.00 3.20
3432 9313 4.439057 TGGTTAGCTGGTAATTAAGAGCG 58.561 43.478 0.00 0.00 36.52 5.03
3438 9319 3.687698 GCTGGTAATTAAGAGCGTTTGGA 59.312 43.478 2.15 0.00 0.00 3.53
3439 9320 4.155280 GCTGGTAATTAAGAGCGTTTGGAA 59.845 41.667 2.15 0.00 0.00 3.53
3440 9321 5.616488 TGGTAATTAAGAGCGTTTGGAAC 57.384 39.130 0.00 0.00 0.00 3.62
3441 9322 5.064558 TGGTAATTAAGAGCGTTTGGAACA 58.935 37.500 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.093235 ACCTTGAGGAACTGCATCTAGC 60.093 50.000 3.59 0.00 41.55 3.42
2 3 3.445008 AGACCTTGAGGAACTGCATCTA 58.555 45.455 3.59 0.00 41.55 1.98
3 4 2.264455 AGACCTTGAGGAACTGCATCT 58.736 47.619 3.59 0.00 41.55 2.90
4 5 2.746362 CAAGACCTTGAGGAACTGCATC 59.254 50.000 3.59 0.00 41.55 3.91
5 6 2.107204 ACAAGACCTTGAGGAACTGCAT 59.893 45.455 15.84 0.00 41.55 3.96
6 7 1.490490 ACAAGACCTTGAGGAACTGCA 59.510 47.619 15.84 0.00 41.55 4.41
7 8 2.147150 GACAAGACCTTGAGGAACTGC 58.853 52.381 15.84 0.00 41.55 4.40
8 9 2.104792 TGGACAAGACCTTGAGGAACTG 59.895 50.000 15.84 0.41 41.55 3.16
10 11 2.930826 TGGACAAGACCTTGAGGAAC 57.069 50.000 15.84 0.00 42.93 3.62
14 2331 2.291741 GCAGTTTGGACAAGACCTTGAG 59.708 50.000 15.84 0.00 42.93 3.02
23 2340 1.444119 GCAGACCGCAGTTTGGACAA 61.444 55.000 0.00 0.00 41.79 3.18
38 2355 6.428465 TGAATGTATTACCTTCAAAACGCAGA 59.572 34.615 10.86 0.00 31.43 4.26
84 2472 4.389077 CCTTCAAACGGACTAAGTAAGCTG 59.611 45.833 0.00 0.00 0.00 4.24
85 2473 4.566987 CCTTCAAACGGACTAAGTAAGCT 58.433 43.478 0.00 0.00 0.00 3.74
86 2474 3.124806 GCCTTCAAACGGACTAAGTAAGC 59.875 47.826 0.00 0.00 0.00 3.09
87 2475 3.367025 CGCCTTCAAACGGACTAAGTAAG 59.633 47.826 0.00 0.00 0.00 2.34
88 2476 3.319755 CGCCTTCAAACGGACTAAGTAA 58.680 45.455 0.00 0.00 0.00 2.24
89 2477 2.927871 GCGCCTTCAAACGGACTAAGTA 60.928 50.000 0.00 0.00 0.00 2.24
90 2478 1.792006 CGCCTTCAAACGGACTAAGT 58.208 50.000 0.00 0.00 0.00 2.24
91 2479 0.442699 GCGCCTTCAAACGGACTAAG 59.557 55.000 0.00 0.00 0.00 2.18
92 2480 1.286354 CGCGCCTTCAAACGGACTAA 61.286 55.000 0.00 0.00 0.00 2.24
93 2481 1.735198 CGCGCCTTCAAACGGACTA 60.735 57.895 0.00 0.00 0.00 2.59
94 2482 3.041940 CGCGCCTTCAAACGGACT 61.042 61.111 0.00 0.00 0.00 3.85
95 2483 3.291167 GACGCGCCTTCAAACGGAC 62.291 63.158 5.73 0.00 0.00 4.79
96 2484 3.039588 GACGCGCCTTCAAACGGA 61.040 61.111 5.73 0.00 0.00 4.69
97 2485 4.424430 CGACGCGCCTTCAAACGG 62.424 66.667 5.73 0.00 0.00 4.44
98 2486 3.335259 CTCGACGCGCCTTCAAACG 62.335 63.158 5.73 0.00 0.00 3.60
99 2487 1.554042 TTCTCGACGCGCCTTCAAAC 61.554 55.000 5.73 0.00 0.00 2.93
100 2488 0.876777 TTTCTCGACGCGCCTTCAAA 60.877 50.000 5.73 0.00 0.00 2.69
101 2489 0.876777 TTTTCTCGACGCGCCTTCAA 60.877 50.000 5.73 0.00 0.00 2.69
102 2490 0.876777 TTTTTCTCGACGCGCCTTCA 60.877 50.000 5.73 0.00 0.00 3.02
103 2491 1.857364 TTTTTCTCGACGCGCCTTC 59.143 52.632 5.73 0.00 0.00 3.46
104 2492 4.036977 TTTTTCTCGACGCGCCTT 57.963 50.000 5.73 0.00 0.00 4.35
118 2506 7.264294 AGGATGTGGAGATTACTCTCTTTTT 57.736 36.000 9.69 0.00 46.11 1.94
119 2507 6.882768 AGGATGTGGAGATTACTCTCTTTT 57.117 37.500 9.69 0.00 46.11 2.27
120 2508 6.882768 AAGGATGTGGAGATTACTCTCTTT 57.117 37.500 9.69 0.00 46.11 2.52
121 2509 6.882768 AAAGGATGTGGAGATTACTCTCTT 57.117 37.500 9.69 0.00 46.11 2.85
122 2510 6.882768 AAAAGGATGTGGAGATTACTCTCT 57.117 37.500 9.69 0.00 46.11 3.10
123 2511 9.620259 AAATAAAAGGATGTGGAGATTACTCTC 57.380 33.333 1.50 1.50 46.14 3.20
124 2512 9.620259 GAAATAAAAGGATGTGGAGATTACTCT 57.380 33.333 0.00 0.00 42.28 3.24
125 2513 8.841300 GGAAATAAAAGGATGTGGAGATTACTC 58.159 37.037 0.00 0.00 41.94 2.59
126 2514 8.336235 TGGAAATAAAAGGATGTGGAGATTACT 58.664 33.333 0.00 0.00 0.00 2.24
127 2515 8.519799 TGGAAATAAAAGGATGTGGAGATTAC 57.480 34.615 0.00 0.00 0.00 1.89
128 2516 8.966868 GTTGGAAATAAAAGGATGTGGAGATTA 58.033 33.333 0.00 0.00 0.00 1.75
129 2517 7.675619 AGTTGGAAATAAAAGGATGTGGAGATT 59.324 33.333 0.00 0.00 0.00 2.40
130 2518 7.184862 AGTTGGAAATAAAAGGATGTGGAGAT 58.815 34.615 0.00 0.00 0.00 2.75
131 2519 6.552008 AGTTGGAAATAAAAGGATGTGGAGA 58.448 36.000 0.00 0.00 0.00 3.71
132 2520 6.840780 AGTTGGAAATAAAAGGATGTGGAG 57.159 37.500 0.00 0.00 0.00 3.86
133 2521 7.947890 AGTAAGTTGGAAATAAAAGGATGTGGA 59.052 33.333 0.00 0.00 0.00 4.02
134 2522 8.122472 AGTAAGTTGGAAATAAAAGGATGTGG 57.878 34.615 0.00 0.00 0.00 4.17
186 2574 6.942532 TCCATTGCCTTTGCTAATAAGTAG 57.057 37.500 0.00 0.00 38.71 2.57
189 2577 8.496707 AAATTTCCATTGCCTTTGCTAATAAG 57.503 30.769 0.00 0.00 38.71 1.73
219 2607 6.622427 AATTACCAGCTAACTAAGTCAGGT 57.378 37.500 0.00 0.00 0.00 4.00
352 2750 4.577875 CAAGCCATGTTCTTCTCTCTTCT 58.422 43.478 0.00 0.00 0.00 2.85
435 2833 2.567169 CTGTAGTGTGGATGAACTGGGA 59.433 50.000 0.00 0.00 0.00 4.37
485 2883 1.382522 CCACGGAAAGATGATGGTGG 58.617 55.000 0.00 0.00 38.97 4.61
632 3030 5.751028 GTGTTGCACCTATAGAGAGACATTC 59.249 44.000 0.00 0.00 0.00 2.67
1060 3752 1.270147 GCTCGAGTGGTACTTGTTGGT 60.270 52.381 15.13 0.00 31.48 3.67
1133 3831 2.507102 CGATGACCGTGCGAGCTT 60.507 61.111 0.00 0.00 0.00 3.74
1198 3896 1.378882 GCATCCGCAAGCATCCTGAA 61.379 55.000 0.00 0.00 38.36 3.02
1203 3901 1.007734 CATGGCATCCGCAAGCATC 60.008 57.895 0.00 0.00 41.24 3.91
1226 3924 0.252742 ACCTAGTGCCCAGTAGCCTT 60.253 55.000 4.90 0.00 33.93 4.35
1250 3948 2.423892 TCTTCGAGTGAGATGTACCTGC 59.576 50.000 0.00 0.00 0.00 4.85
1442 4198 1.873903 GCAGAATACGGTCGCATCCAT 60.874 52.381 0.00 0.00 0.00 3.41
1458 4214 0.028902 CATCGTATGGTCGACGCAGA 59.971 55.000 9.92 3.35 42.56 4.26
1518 4274 3.885901 AGTTCAGGAGCTTTTGTTTCTCC 59.114 43.478 0.00 0.00 45.11 3.71
1524 4280 4.210331 ACATGAAGTTCAGGAGCTTTTGT 58.790 39.130 23.38 11.05 31.89 2.83
1558 4320 2.772191 TGCACCACCACCAGGAGT 60.772 61.111 0.00 0.00 38.69 3.85
1654 4416 3.386078 ACTGAAGAGAAGTGTGAGCTGAA 59.614 43.478 0.00 0.00 0.00 3.02
1735 4500 5.062308 GCTCAACAATTACTAGTGTCTTCCG 59.938 44.000 5.39 0.00 29.99 4.30
1750 4515 5.508489 CCACATCTGAAACAAGCTCAACAAT 60.508 40.000 0.00 0.00 0.00 2.71
1791 4556 2.483877 CGCCACAAATGAGCAGAACTTA 59.516 45.455 0.00 0.00 0.00 2.24
1820 4588 2.229792 TGATCACCTTGTTTCCACTGC 58.770 47.619 0.00 0.00 0.00 4.40
1923 4691 1.815421 CAGGTGCTGTGCCGGATAC 60.815 63.158 5.05 3.50 0.00 2.24
1940 4741 1.227147 GCTATCCACGCTAACCGCA 60.227 57.895 0.00 0.00 41.76 5.69
2195 4996 1.288127 GTGTAGGAAGGCACGACGT 59.712 57.895 0.00 0.00 0.00 4.34
2236 5037 2.681344 GCAATTCCCTTTCCGTCGTAAT 59.319 45.455 0.00 0.00 0.00 1.89
2422 5223 1.452145 GCACGCTTCCTCCCAAACAA 61.452 55.000 0.00 0.00 0.00 2.83
2426 5227 2.032528 CTGCACGCTTCCTCCCAA 59.967 61.111 0.00 0.00 0.00 4.12
2470 5278 1.568504 ATCCCTGTAGAAGGCGTTCA 58.431 50.000 20.38 4.78 45.89 3.18
2476 5284 4.402793 TCTCTTCGAAATCCCTGTAGAAGG 59.597 45.833 0.00 0.00 46.94 3.46
2499 5310 6.421485 ACTGAGCAAATACTTGAGATTCCAT 58.579 36.000 0.00 0.00 34.14 3.41
2709 5676 7.254761 CCAAAAGTACAAATTTTTCCAAGAGGC 60.255 37.037 0.00 0.00 33.74 4.70
2726 5695 4.483476 AAATCGAGTGCACCAAAAGTAC 57.517 40.909 14.63 0.00 0.00 2.73
2727 5696 5.066634 TGAAAAATCGAGTGCACCAAAAGTA 59.933 36.000 14.63 0.00 0.00 2.24
2728 5697 4.142271 TGAAAAATCGAGTGCACCAAAAGT 60.142 37.500 14.63 0.00 0.00 2.66
2863 5926 0.326264 AGCTCTCCCATGGTGTTGAC 59.674 55.000 11.73 0.00 0.00 3.18
2864 5927 0.325933 CAGCTCTCCCATGGTGTTGA 59.674 55.000 11.73 0.00 0.00 3.18
2872 5935 2.369203 CTCACATCATCAGCTCTCCCAT 59.631 50.000 0.00 0.00 0.00 4.00
2875 5938 1.138464 TGCTCACATCATCAGCTCTCC 59.862 52.381 0.00 0.00 34.03 3.71
2876 5939 2.598686 TGCTCACATCATCAGCTCTC 57.401 50.000 0.00 0.00 34.03 3.20
2906 5972 4.033776 CTGACCCCGGTGGCACAT 62.034 66.667 20.82 0.00 44.52 3.21
2917 5983 1.153229 GGAACCCGTATGCTGACCC 60.153 63.158 0.00 0.00 0.00 4.46
2973 6039 3.254166 GCAACTGCTGGATCTCTCAAAAA 59.746 43.478 0.00 0.00 38.21 1.94
2974 6040 2.816087 GCAACTGCTGGATCTCTCAAAA 59.184 45.455 0.00 0.00 38.21 2.44
2975 6041 2.430465 GCAACTGCTGGATCTCTCAAA 58.570 47.619 0.00 0.00 38.21 2.69
2976 6042 2.105006 GCAACTGCTGGATCTCTCAA 57.895 50.000 0.00 0.00 38.21 3.02
2977 6043 3.849002 GCAACTGCTGGATCTCTCA 57.151 52.632 0.00 0.00 38.21 3.27
2988 6054 4.843220 ATATATGAAAGCCAGCAACTGC 57.157 40.909 0.00 0.00 42.49 4.40
2989 6055 6.860023 GCTTAATATATGAAAGCCAGCAACTG 59.140 38.462 16.82 0.00 39.74 3.16
2990 6056 6.547141 TGCTTAATATATGAAAGCCAGCAACT 59.453 34.615 21.57 0.00 43.93 3.16
2991 6057 6.738114 TGCTTAATATATGAAAGCCAGCAAC 58.262 36.000 21.57 3.33 43.93 4.17
2992 6058 6.957920 TGCTTAATATATGAAAGCCAGCAA 57.042 33.333 21.57 7.71 43.93 3.91
2993 6059 8.634335 TTATGCTTAATATATGAAAGCCAGCA 57.366 30.769 21.57 11.42 43.93 4.41
2994 6060 8.950210 TCTTATGCTTAATATATGAAAGCCAGC 58.050 33.333 21.57 7.04 43.93 4.85
3000 6066 9.371136 CCGCTCTCTTATGCTTAATATATGAAA 57.629 33.333 0.00 0.00 0.00 2.69
3001 6067 8.749354 TCCGCTCTCTTATGCTTAATATATGAA 58.251 33.333 0.00 0.00 0.00 2.57
3002 6068 8.293699 TCCGCTCTCTTATGCTTAATATATGA 57.706 34.615 0.00 0.00 0.00 2.15
3003 6069 8.812329 GTTCCGCTCTCTTATGCTTAATATATG 58.188 37.037 0.00 0.00 0.00 1.78
3004 6070 8.531982 TGTTCCGCTCTCTTATGCTTAATATAT 58.468 33.333 0.00 0.00 0.00 0.86
3005 6071 7.892609 TGTTCCGCTCTCTTATGCTTAATATA 58.107 34.615 0.00 0.00 0.00 0.86
3006 6072 6.759272 TGTTCCGCTCTCTTATGCTTAATAT 58.241 36.000 0.00 0.00 0.00 1.28
3007 6073 6.156748 TGTTCCGCTCTCTTATGCTTAATA 57.843 37.500 0.00 0.00 0.00 0.98
3008 6074 5.023533 TGTTCCGCTCTCTTATGCTTAAT 57.976 39.130 0.00 0.00 0.00 1.40
3009 6075 4.465632 TGTTCCGCTCTCTTATGCTTAA 57.534 40.909 0.00 0.00 0.00 1.85
3010 6076 4.465632 TTGTTCCGCTCTCTTATGCTTA 57.534 40.909 0.00 0.00 0.00 3.09
3011 6077 3.334583 TTGTTCCGCTCTCTTATGCTT 57.665 42.857 0.00 0.00 0.00 3.91
3012 6078 3.265791 CTTTGTTCCGCTCTCTTATGCT 58.734 45.455 0.00 0.00 0.00 3.79
3013 6079 2.352960 CCTTTGTTCCGCTCTCTTATGC 59.647 50.000 0.00 0.00 0.00 3.14
3014 6080 2.352960 GCCTTTGTTCCGCTCTCTTATG 59.647 50.000 0.00 0.00 0.00 1.90
3015 6081 2.633488 GCCTTTGTTCCGCTCTCTTAT 58.367 47.619 0.00 0.00 0.00 1.73
3016 6082 1.671850 CGCCTTTGTTCCGCTCTCTTA 60.672 52.381 0.00 0.00 0.00 2.10
3017 6083 0.951040 CGCCTTTGTTCCGCTCTCTT 60.951 55.000 0.00 0.00 0.00 2.85
3018 6084 1.374758 CGCCTTTGTTCCGCTCTCT 60.375 57.895 0.00 0.00 0.00 3.10
3019 6085 1.228657 AACGCCTTTGTTCCGCTCTC 61.229 55.000 0.00 0.00 0.00 3.20
3020 6086 0.034337 TAACGCCTTTGTTCCGCTCT 59.966 50.000 0.00 0.00 33.32 4.09
3021 6087 0.165295 GTAACGCCTTTGTTCCGCTC 59.835 55.000 0.00 0.00 33.32 5.03
3022 6088 0.250166 AGTAACGCCTTTGTTCCGCT 60.250 50.000 0.00 0.00 33.32 5.52
3023 6089 1.127397 GTAGTAACGCCTTTGTTCCGC 59.873 52.381 0.00 0.00 33.32 5.54
3024 6090 1.728425 GGTAGTAACGCCTTTGTTCCG 59.272 52.381 0.00 0.00 33.32 4.30
3025 6091 1.728425 CGGTAGTAACGCCTTTGTTCC 59.272 52.381 0.00 0.00 33.32 3.62
3026 6092 2.156310 CACGGTAGTAACGCCTTTGTTC 59.844 50.000 7.70 0.00 33.32 3.18
3027 6093 2.137523 CACGGTAGTAACGCCTTTGTT 58.862 47.619 7.70 0.00 35.86 2.83
3028 6094 1.340889 TCACGGTAGTAACGCCTTTGT 59.659 47.619 7.70 0.00 34.00 2.83
3029 6095 2.068837 TCACGGTAGTAACGCCTTTG 57.931 50.000 7.70 0.00 34.00 2.77
3030 6096 2.231964 TGATCACGGTAGTAACGCCTTT 59.768 45.455 7.70 0.00 34.00 3.11
3031 6097 1.820519 TGATCACGGTAGTAACGCCTT 59.179 47.619 7.70 0.00 34.00 4.35
3032 6098 1.466856 TGATCACGGTAGTAACGCCT 58.533 50.000 7.70 0.00 34.00 5.52
3033 6099 2.190981 CTTGATCACGGTAGTAACGCC 58.809 52.381 7.70 0.00 34.00 5.68
3034 6100 2.872370 ACTTGATCACGGTAGTAACGC 58.128 47.619 7.70 0.00 34.00 4.84
3035 6101 5.394613 CGATAACTTGATCACGGTAGTAACG 59.605 44.000 5.94 5.94 37.36 3.18
3036 6102 5.172771 GCGATAACTTGATCACGGTAGTAAC 59.827 44.000 3.16 0.00 0.00 2.50
3037 6103 5.276270 GCGATAACTTGATCACGGTAGTAA 58.724 41.667 3.16 0.00 0.00 2.24
3038 6104 4.553351 CGCGATAACTTGATCACGGTAGTA 60.553 45.833 0.00 0.00 29.75 1.82
3039 6105 3.703420 GCGATAACTTGATCACGGTAGT 58.297 45.455 3.16 0.00 0.00 2.73
3040 6106 2.719556 CGCGATAACTTGATCACGGTAG 59.280 50.000 0.00 0.00 29.75 3.18
3041 6107 2.355444 TCGCGATAACTTGATCACGGTA 59.645 45.455 3.71 0.00 33.30 4.02
3042 6108 1.133598 TCGCGATAACTTGATCACGGT 59.866 47.619 3.71 0.00 33.30 4.83
3043 6109 1.517276 GTCGCGATAACTTGATCACGG 59.483 52.381 14.06 0.00 33.30 4.94
3044 6110 2.182014 TGTCGCGATAACTTGATCACG 58.818 47.619 14.06 0.00 33.66 4.35
3045 6111 2.034507 GCTGTCGCGATAACTTGATCAC 60.035 50.000 14.06 0.00 0.00 3.06
3046 6112 2.193447 GCTGTCGCGATAACTTGATCA 58.807 47.619 14.06 0.32 0.00 2.92
3047 6113 2.912900 GCTGTCGCGATAACTTGATC 57.087 50.000 14.06 0.00 0.00 2.92
3059 6125 1.226603 CTACTACCCACGCTGTCGC 60.227 63.158 0.00 0.00 39.84 5.19
3060 6126 1.226603 GCTACTACCCACGCTGTCG 60.227 63.158 0.00 0.00 42.43 4.35
3061 6127 0.460311 ATGCTACTACCCACGCTGTC 59.540 55.000 0.00 0.00 0.00 3.51
3062 6128 0.175760 CATGCTACTACCCACGCTGT 59.824 55.000 0.00 0.00 0.00 4.40
3063 6129 0.459899 TCATGCTACTACCCACGCTG 59.540 55.000 0.00 0.00 0.00 5.18
3064 6130 0.747255 CTCATGCTACTACCCACGCT 59.253 55.000 0.00 0.00 0.00 5.07
3065 6131 0.460311 ACTCATGCTACTACCCACGC 59.540 55.000 0.00 0.00 0.00 5.34
3066 6132 2.961526 AACTCATGCTACTACCCACG 57.038 50.000 0.00 0.00 0.00 4.94
3067 6133 6.128090 GGTTTTAAACTCATGCTACTACCCAC 60.128 42.308 7.79 0.00 0.00 4.61
3068 6134 5.941647 GGTTTTAAACTCATGCTACTACCCA 59.058 40.000 7.79 0.00 0.00 4.51
3069 6135 5.064325 CGGTTTTAAACTCATGCTACTACCC 59.936 44.000 7.79 0.00 0.00 3.69
3070 6136 5.064325 CCGGTTTTAAACTCATGCTACTACC 59.936 44.000 7.79 0.00 0.00 3.18
3071 6137 5.870978 TCCGGTTTTAAACTCATGCTACTAC 59.129 40.000 7.79 0.00 0.00 2.73
3072 6138 6.040209 TCCGGTTTTAAACTCATGCTACTA 57.960 37.500 7.79 0.00 0.00 1.82
3073 6139 4.901868 TCCGGTTTTAAACTCATGCTACT 58.098 39.130 7.79 0.00 0.00 2.57
3074 6140 5.180680 AGTTCCGGTTTTAAACTCATGCTAC 59.819 40.000 7.79 0.00 0.00 3.58
3075 6141 5.310451 AGTTCCGGTTTTAAACTCATGCTA 58.690 37.500 7.79 0.00 0.00 3.49
3076 6142 4.142038 AGTTCCGGTTTTAAACTCATGCT 58.858 39.130 7.79 0.00 0.00 3.79
3077 6143 4.499037 AGTTCCGGTTTTAAACTCATGC 57.501 40.909 7.79 0.00 0.00 4.06
3078 6144 6.961576 TGTAAGTTCCGGTTTTAAACTCATG 58.038 36.000 7.79 0.00 32.24 3.07
3079 6145 6.206048 CCTGTAAGTTCCGGTTTTAAACTCAT 59.794 38.462 7.79 0.00 32.24 2.90
3080 6146 5.528320 CCTGTAAGTTCCGGTTTTAAACTCA 59.472 40.000 7.79 0.00 32.24 3.41
3081 6147 5.561532 GCCTGTAAGTTCCGGTTTTAAACTC 60.562 44.000 7.79 0.00 32.24 3.01
3082 6148 4.276678 GCCTGTAAGTTCCGGTTTTAAACT 59.723 41.667 7.79 0.00 34.81 2.66
3083 6149 4.539870 GCCTGTAAGTTCCGGTTTTAAAC 58.460 43.478 0.00 0.00 0.00 2.01
3084 6150 3.569277 GGCCTGTAAGTTCCGGTTTTAAA 59.431 43.478 0.00 0.00 0.00 1.52
3085 6151 3.148412 GGCCTGTAAGTTCCGGTTTTAA 58.852 45.455 0.00 0.00 0.00 1.52
3086 6152 2.552809 GGGCCTGTAAGTTCCGGTTTTA 60.553 50.000 0.84 0.00 0.00 1.52
3087 6153 1.612676 GGCCTGTAAGTTCCGGTTTT 58.387 50.000 0.00 0.00 0.00 2.43
3088 6154 0.251033 GGGCCTGTAAGTTCCGGTTT 60.251 55.000 0.84 0.00 0.00 3.27
3089 6155 1.131928 AGGGCCTGTAAGTTCCGGTT 61.132 55.000 4.50 0.00 30.69 4.44
3090 6156 1.538135 AGGGCCTGTAAGTTCCGGT 60.538 57.895 4.50 0.00 30.69 5.28
3091 6157 1.078426 CAGGGCCTGTAAGTTCCGG 60.078 63.158 25.74 0.00 30.69 5.14
3092 6158 1.078426 CCAGGGCCTGTAAGTTCCG 60.078 63.158 30.68 10.16 30.69 4.30
3093 6159 1.303282 CCCAGGGCCTGTAAGTTCC 59.697 63.158 30.68 0.00 0.00 3.62
3094 6160 1.303282 CCCCAGGGCCTGTAAGTTC 59.697 63.158 30.68 0.00 0.00 3.01
3095 6161 2.238701 CCCCCAGGGCCTGTAAGTT 61.239 63.158 30.68 0.00 35.35 2.66
3096 6162 2.614013 CCCCCAGGGCCTGTAAGT 60.614 66.667 30.68 0.00 35.35 2.24
3097 6163 2.286121 TCCCCCAGGGCCTGTAAG 60.286 66.667 30.68 18.80 43.94 2.34
3098 6164 2.612746 GTCCCCCAGGGCCTGTAA 60.613 66.667 30.68 11.17 43.94 2.41
3099 6165 3.943137 CTGTCCCCCAGGGCCTGTA 62.943 68.421 30.68 11.52 43.94 2.74
3110 6176 4.716977 AGTCCCGACCCTGTCCCC 62.717 72.222 0.00 0.00 0.00 4.81
3111 6177 2.606826 AAGTCCCGACCCTGTCCC 60.607 66.667 0.00 0.00 0.00 4.46
3112 6178 1.477685 TTCAAGTCCCGACCCTGTCC 61.478 60.000 0.00 0.00 0.00 4.02
3113 6179 0.395312 TTTCAAGTCCCGACCCTGTC 59.605 55.000 0.00 0.00 0.00 3.51
3114 6180 0.841289 TTTTCAAGTCCCGACCCTGT 59.159 50.000 0.00 0.00 0.00 4.00
3115 6181 2.200373 ATTTTCAAGTCCCGACCCTG 57.800 50.000 0.00 0.00 0.00 4.45
3116 6182 3.886123 CATATTTTCAAGTCCCGACCCT 58.114 45.455 0.00 0.00 0.00 4.34
3117 6183 2.357952 GCATATTTTCAAGTCCCGACCC 59.642 50.000 0.00 0.00 0.00 4.46
3118 6184 3.279434 AGCATATTTTCAAGTCCCGACC 58.721 45.455 0.00 0.00 0.00 4.79
3119 6185 7.724305 TTATAGCATATTTTCAAGTCCCGAC 57.276 36.000 0.00 0.00 0.00 4.79
3120 6186 8.375506 AGATTATAGCATATTTTCAAGTCCCGA 58.624 33.333 0.00 0.00 0.00 5.14
3121 6187 8.553459 AGATTATAGCATATTTTCAAGTCCCG 57.447 34.615 0.00 0.00 0.00 5.14
3122 6188 9.507329 TGAGATTATAGCATATTTTCAAGTCCC 57.493 33.333 0.00 0.00 0.00 4.46
3128 6194 9.676861 CCAGGATGAGATTATAGCATATTTTCA 57.323 33.333 0.00 0.00 39.69 2.69
3129 6195 9.896645 TCCAGGATGAGATTATAGCATATTTTC 57.103 33.333 0.00 0.00 39.69 2.29
3132 6198 8.658619 GGATCCAGGATGAGATTATAGCATATT 58.341 37.037 6.70 0.00 39.69 1.28
3133 6199 7.237263 GGGATCCAGGATGAGATTATAGCATAT 59.763 40.741 15.23 0.00 39.69 1.78
3134 6200 6.556495 GGGATCCAGGATGAGATTATAGCATA 59.444 42.308 15.23 0.00 39.69 3.14
3135 6201 5.369110 GGGATCCAGGATGAGATTATAGCAT 59.631 44.000 15.23 0.00 39.69 3.79
3136 6202 4.718774 GGGATCCAGGATGAGATTATAGCA 59.281 45.833 15.23 0.00 39.69 3.49
3137 6203 4.102367 GGGGATCCAGGATGAGATTATAGC 59.898 50.000 15.23 0.00 39.69 2.97
3138 6204 4.343526 CGGGGATCCAGGATGAGATTATAG 59.656 50.000 15.23 0.00 39.69 1.31
3139 6205 4.016572 TCGGGGATCCAGGATGAGATTATA 60.017 45.833 15.23 0.00 39.69 0.98
3140 6206 3.110705 CGGGGATCCAGGATGAGATTAT 58.889 50.000 15.23 0.00 39.69 1.28
3141 6207 2.111792 TCGGGGATCCAGGATGAGATTA 59.888 50.000 15.23 0.00 39.69 1.75
3142 6208 1.132721 TCGGGGATCCAGGATGAGATT 60.133 52.381 15.23 0.00 39.69 2.40
3143 6209 0.489117 TCGGGGATCCAGGATGAGAT 59.511 55.000 15.23 0.00 39.69 2.75
3144 6210 0.178950 CTCGGGGATCCAGGATGAGA 60.179 60.000 15.23 0.00 39.69 3.27
3145 6211 0.178950 TCTCGGGGATCCAGGATGAG 60.179 60.000 15.23 7.42 39.69 2.90
3146 6212 0.178950 CTCTCGGGGATCCAGGATGA 60.179 60.000 15.23 8.26 39.69 2.92
3147 6213 1.190833 CCTCTCGGGGATCCAGGATG 61.191 65.000 15.23 5.90 0.00 3.51
3148 6214 1.157276 CCTCTCGGGGATCCAGGAT 59.843 63.158 15.23 0.00 0.00 3.24
3149 6215 2.609339 CCTCTCGGGGATCCAGGA 59.391 66.667 15.23 8.93 0.00 3.86
3159 6225 1.377333 GCCTTGAAACCCCTCTCGG 60.377 63.158 0.00 0.00 0.00 4.63
3160 6226 0.955919 GTGCCTTGAAACCCCTCTCG 60.956 60.000 0.00 0.00 0.00 4.04
3161 6227 0.609406 GGTGCCTTGAAACCCCTCTC 60.609 60.000 0.00 0.00 0.00 3.20
3162 6228 1.460699 GGTGCCTTGAAACCCCTCT 59.539 57.895 0.00 0.00 0.00 3.69
3163 6229 1.971695 CGGTGCCTTGAAACCCCTC 60.972 63.158 0.00 0.00 32.44 4.30
3164 6230 2.115266 CGGTGCCTTGAAACCCCT 59.885 61.111 0.00 0.00 32.44 4.79
3165 6231 3.680786 GCGGTGCCTTGAAACCCC 61.681 66.667 0.00 0.00 32.44 4.95
3166 6232 4.038080 CGCGGTGCCTTGAAACCC 62.038 66.667 0.00 0.00 32.44 4.11
3167 6233 4.700365 GCGCGGTGCCTTGAAACC 62.700 66.667 8.83 0.00 37.76 3.27
3183 6249 4.486503 CTGGAGGCTGGCTGGAGC 62.487 72.222 9.06 0.00 38.34 4.70
3184 6250 2.686470 TCTGGAGGCTGGCTGGAG 60.686 66.667 9.06 4.05 0.00 3.86
3185 6251 2.686470 CTCTGGAGGCTGGCTGGA 60.686 66.667 9.06 3.34 0.00 3.86
3186 6252 3.795041 CCTCTGGAGGCTGGCTGG 61.795 72.222 9.06 0.00 42.44 4.85
3195 6261 0.808125 CGTGACTGAGACCTCTGGAG 59.192 60.000 8.43 0.00 33.52 3.86
3196 6262 0.609406 CCGTGACTGAGACCTCTGGA 60.609 60.000 8.43 0.00 33.52 3.86
3197 6263 1.599606 CCCGTGACTGAGACCTCTGG 61.600 65.000 8.43 0.00 33.52 3.86
3198 6264 0.896019 ACCCGTGACTGAGACCTCTG 60.896 60.000 2.89 2.89 35.10 3.35
3199 6265 0.896019 CACCCGTGACTGAGACCTCT 60.896 60.000 0.00 0.00 0.00 3.69
3200 6266 0.894184 TCACCCGTGACTGAGACCTC 60.894 60.000 0.00 0.00 34.14 3.85
3201 6267 0.251832 ATCACCCGTGACTGAGACCT 60.252 55.000 0.00 0.00 43.11 3.85
3202 6268 0.173708 GATCACCCGTGACTGAGACC 59.826 60.000 0.00 0.00 43.11 3.85
3203 6269 0.179161 CGATCACCCGTGACTGAGAC 60.179 60.000 0.00 0.00 43.11 3.36
3204 6270 1.934220 GCGATCACCCGTGACTGAGA 61.934 60.000 0.00 0.00 43.11 3.27
3205 6271 1.517257 GCGATCACCCGTGACTGAG 60.517 63.158 0.00 0.00 43.11 3.35
3206 6272 2.571757 GCGATCACCCGTGACTGA 59.428 61.111 0.00 0.00 43.11 3.41
3207 6273 2.509336 GGCGATCACCCGTGACTG 60.509 66.667 0.00 0.00 43.11 3.51
3208 6274 4.129737 CGGCGATCACCCGTGACT 62.130 66.667 0.00 0.00 43.11 3.41
3215 6281 2.406616 AATTGTGGCGGCGATCACC 61.407 57.895 23.64 11.83 33.29 4.02
3216 6282 1.226379 CAATTGTGGCGGCGATCAC 60.226 57.895 21.18 21.18 34.71 3.06
3217 6283 1.368345 CTCAATTGTGGCGGCGATCA 61.368 55.000 12.98 4.95 0.00 2.92
3218 6284 1.089481 TCTCAATTGTGGCGGCGATC 61.089 55.000 12.98 1.66 0.00 3.69
3219 6285 0.464373 ATCTCAATTGTGGCGGCGAT 60.464 50.000 12.98 0.00 0.00 4.58
3220 6286 1.078497 ATCTCAATTGTGGCGGCGA 60.078 52.632 12.98 0.00 0.00 5.54
3221 6287 1.353103 GATCTCAATTGTGGCGGCG 59.647 57.895 0.51 0.51 0.00 6.46
3222 6288 0.099436 GTGATCTCAATTGTGGCGGC 59.901 55.000 0.00 0.00 0.00 6.53
3223 6289 0.734889 GGTGATCTCAATTGTGGCGG 59.265 55.000 5.13 0.00 0.00 6.13
3224 6290 0.374758 CGGTGATCTCAATTGTGGCG 59.625 55.000 5.13 0.00 0.00 5.69
3225 6291 1.453155 ACGGTGATCTCAATTGTGGC 58.547 50.000 5.13 0.39 0.00 5.01
3226 6292 3.073678 TCAACGGTGATCTCAATTGTGG 58.926 45.455 0.00 0.25 0.00 4.17
3227 6293 3.125829 CCTCAACGGTGATCTCAATTGTG 59.874 47.826 2.20 2.93 31.85 3.33
3228 6294 3.007940 TCCTCAACGGTGATCTCAATTGT 59.992 43.478 2.20 0.00 31.85 2.71
3229 6295 3.599343 TCCTCAACGGTGATCTCAATTG 58.401 45.455 2.20 0.00 31.85 2.32
3230 6296 3.981071 TCCTCAACGGTGATCTCAATT 57.019 42.857 2.20 0.00 31.85 2.32
3231 6297 3.452264 TCATCCTCAACGGTGATCTCAAT 59.548 43.478 2.20 0.00 31.85 2.57
3232 6298 2.831526 TCATCCTCAACGGTGATCTCAA 59.168 45.455 2.20 0.00 31.85 3.02
3233 6299 2.428530 CTCATCCTCAACGGTGATCTCA 59.571 50.000 2.20 0.00 31.85 3.27
3234 6300 2.223923 CCTCATCCTCAACGGTGATCTC 60.224 54.545 2.20 0.00 31.85 2.75
3235 6301 1.759445 CCTCATCCTCAACGGTGATCT 59.241 52.381 2.20 0.00 31.85 2.75
3236 6302 1.202580 CCCTCATCCTCAACGGTGATC 60.203 57.143 2.20 0.00 31.85 2.92
3237 6303 0.833287 CCCTCATCCTCAACGGTGAT 59.167 55.000 2.20 0.00 31.85 3.06
3238 6304 1.899437 GCCCTCATCCTCAACGGTGA 61.899 60.000 1.69 1.69 0.00 4.02
3239 6305 1.450312 GCCCTCATCCTCAACGGTG 60.450 63.158 0.00 0.00 0.00 4.94
3240 6306 1.201429 AAGCCCTCATCCTCAACGGT 61.201 55.000 0.00 0.00 0.00 4.83
3241 6307 0.745845 CAAGCCCTCATCCTCAACGG 60.746 60.000 0.00 0.00 0.00 4.44
3242 6308 0.036010 ACAAGCCCTCATCCTCAACG 60.036 55.000 0.00 0.00 0.00 4.10
3243 6309 1.743996 GACAAGCCCTCATCCTCAAC 58.256 55.000 0.00 0.00 0.00 3.18
3244 6310 0.250234 CGACAAGCCCTCATCCTCAA 59.750 55.000 0.00 0.00 0.00 3.02
3245 6311 0.904865 ACGACAAGCCCTCATCCTCA 60.905 55.000 0.00 0.00 0.00 3.86
3246 6312 0.460987 CACGACAAGCCCTCATCCTC 60.461 60.000 0.00 0.00 0.00 3.71
3247 6313 1.599047 CACGACAAGCCCTCATCCT 59.401 57.895 0.00 0.00 0.00 3.24
3248 6314 1.450312 CCACGACAAGCCCTCATCC 60.450 63.158 0.00 0.00 0.00 3.51
3249 6315 0.036388 TTCCACGACAAGCCCTCATC 60.036 55.000 0.00 0.00 0.00 2.92
3250 6316 0.400213 TTTCCACGACAAGCCCTCAT 59.600 50.000 0.00 0.00 0.00 2.90
3251 6317 0.534203 GTTTCCACGACAAGCCCTCA 60.534 55.000 0.00 0.00 0.00 3.86
3252 6318 0.534203 TGTTTCCACGACAAGCCCTC 60.534 55.000 0.00 0.00 0.00 4.30
3253 6319 0.110486 ATGTTTCCACGACAAGCCCT 59.890 50.000 0.00 0.00 0.00 5.19
3254 6320 0.521735 GATGTTTCCACGACAAGCCC 59.478 55.000 0.00 0.00 0.00 5.19
3255 6321 1.523758 AGATGTTTCCACGACAAGCC 58.476 50.000 0.00 0.00 0.00 4.35
3256 6322 2.918131 GCAAGATGTTTCCACGACAAGC 60.918 50.000 0.00 0.00 0.00 4.01
3257 6323 2.290367 TGCAAGATGTTTCCACGACAAG 59.710 45.455 0.00 0.00 0.00 3.16
3258 6324 2.293170 TGCAAGATGTTTCCACGACAA 58.707 42.857 0.00 0.00 0.00 3.18
3259 6325 1.960417 TGCAAGATGTTTCCACGACA 58.040 45.000 0.00 0.00 0.00 4.35
3260 6326 3.236816 CAATGCAAGATGTTTCCACGAC 58.763 45.455 0.00 0.00 0.00 4.34
3261 6327 2.351641 GCAATGCAAGATGTTTCCACGA 60.352 45.455 0.00 0.00 0.00 4.35
3262 6328 1.987770 GCAATGCAAGATGTTTCCACG 59.012 47.619 0.00 0.00 0.00 4.94
3263 6329 1.987770 CGCAATGCAAGATGTTTCCAC 59.012 47.619 5.91 0.00 0.00 4.02
3264 6330 1.669502 GCGCAATGCAAGATGTTTCCA 60.670 47.619 5.91 0.00 45.45 3.53
3265 6331 0.994263 GCGCAATGCAAGATGTTTCC 59.006 50.000 5.91 0.00 45.45 3.13
3276 6342 1.712977 CTCTGGAAGGAGCGCAATGC 61.713 60.000 11.47 0.00 46.98 3.56
3277 6343 2.391469 CTCTGGAAGGAGCGCAATG 58.609 57.895 11.47 0.00 0.00 2.82
3278 6344 4.950479 CTCTGGAAGGAGCGCAAT 57.050 55.556 11.47 0.00 0.00 3.56
3287 6353 2.094854 GCAATGCAAGAACCTCTGGAAG 60.095 50.000 0.00 0.00 0.00 3.46
3288 6354 1.888512 GCAATGCAAGAACCTCTGGAA 59.111 47.619 0.00 0.00 0.00 3.53
3289 6355 1.074405 AGCAATGCAAGAACCTCTGGA 59.926 47.619 8.35 0.00 0.00 3.86
3290 6356 1.542492 AGCAATGCAAGAACCTCTGG 58.458 50.000 8.35 0.00 0.00 3.86
3291 6357 2.818432 AGAAGCAATGCAAGAACCTCTG 59.182 45.455 8.35 0.00 0.00 3.35
3292 6358 3.080319 GAGAAGCAATGCAAGAACCTCT 58.920 45.455 8.35 0.00 0.00 3.69
3293 6359 3.080319 AGAGAAGCAATGCAAGAACCTC 58.920 45.455 8.35 4.45 0.00 3.85
3356 6422 3.009723 TGCAGGCAGCTAAAGTTGTATC 58.990 45.455 2.86 0.00 45.94 2.24
3363 6430 5.278660 CCCTTAATTATGCAGGCAGCTAAAG 60.279 44.000 2.86 0.54 45.94 1.85
3367 6434 2.091665 ACCCTTAATTATGCAGGCAGCT 60.092 45.455 2.86 0.00 45.94 4.24
3368 6435 2.310538 ACCCTTAATTATGCAGGCAGC 58.689 47.619 0.00 0.00 45.96 5.25
3369 6436 4.210331 AGAACCCTTAATTATGCAGGCAG 58.790 43.478 0.00 0.00 0.00 4.85
3370 6437 4.249638 AGAACCCTTAATTATGCAGGCA 57.750 40.909 0.00 0.00 0.00 4.75
3371 6438 4.737649 GCAAGAACCCTTAATTATGCAGGC 60.738 45.833 0.00 0.00 0.00 4.85
3373 6440 5.105797 TGTGCAAGAACCCTTAATTATGCAG 60.106 40.000 6.40 0.00 28.66 4.41
3374 6441 4.769488 TGTGCAAGAACCCTTAATTATGCA 59.231 37.500 2.76 2.76 0.00 3.96
3377 6444 6.238648 GCGTATGTGCAAGAACCCTTAATTAT 60.239 38.462 0.00 0.00 34.15 1.28
3389 6492 1.546029 AGTGAGAGCGTATGTGCAAGA 59.454 47.619 0.00 0.00 37.31 3.02
3390 6493 2.001812 AGTGAGAGCGTATGTGCAAG 57.998 50.000 0.00 0.00 37.31 4.01
3395 6498 3.676324 GCTAACCAAGTGAGAGCGTATGT 60.676 47.826 0.00 0.00 0.00 2.29
3398 6501 2.094700 CAGCTAACCAAGTGAGAGCGTA 60.095 50.000 0.00 0.00 38.20 4.42
3399 6502 0.969894 AGCTAACCAAGTGAGAGCGT 59.030 50.000 0.00 0.00 38.20 5.07
3400 6503 1.354040 CAGCTAACCAAGTGAGAGCG 58.646 55.000 0.00 0.00 38.20 5.03
3401 6504 1.002544 ACCAGCTAACCAAGTGAGAGC 59.997 52.381 0.00 0.00 0.00 4.09
3402 6505 4.537135 TTACCAGCTAACCAAGTGAGAG 57.463 45.455 0.00 0.00 0.00 3.20
3403 6506 5.499004 AATTACCAGCTAACCAAGTGAGA 57.501 39.130 0.00 0.00 0.00 3.27
3406 9287 6.183360 GCTCTTAATTACCAGCTAACCAAGTG 60.183 42.308 7.36 0.00 0.00 3.16
3432 9313 6.037062 CCATCAGAAAAAGGTTTGTTCCAAAC 59.963 38.462 10.58 10.58 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.