Multiple sequence alignment - TraesCS1B01G335000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G335000 chr1B 100.000 4566 0 0 1373 5938 562378236 562373671 0.000000e+00 8432.0
1 TraesCS1B01G335000 chr1B 100.000 1029 0 0 1 1029 562379608 562378580 0.000000e+00 1901.0
2 TraesCS1B01G335000 chr1B 92.857 154 11 0 4626 4779 562374932 562374779 2.150000e-54 224.0
3 TraesCS1B01G335000 chr1B 92.857 154 11 0 4677 4830 562374983 562374830 2.150000e-54 224.0
4 TraesCS1B01G335000 chr1B 89.011 182 11 6 5380 5557 562359045 562358869 3.600000e-52 217.0
5 TraesCS1B01G335000 chr1B 80.442 317 26 18 5564 5847 562358773 562358460 6.030000e-50 209.0
6 TraesCS1B01G335000 chr1B 80.833 240 33 12 495 731 359206929 359206700 6.120000e-40 176.0
7 TraesCS1B01G335000 chr1B 90.361 83 6 2 2647 2728 522010952 522011033 2.260000e-19 108.0
8 TraesCS1B01G335000 chr1B 83.962 106 14 3 5672 5775 562361536 562361432 1.360000e-16 99.0
9 TraesCS1B01G335000 chr1D 96.384 4370 127 11 1572 5938 416101842 416097501 0.000000e+00 7166.0
10 TraesCS1B01G335000 chr1D 84.298 1019 95 35 4 999 416103295 416102319 0.000000e+00 935.0
11 TraesCS1B01G335000 chr1D 84.975 406 57 2 4732 5133 416042860 416042455 5.540000e-110 409.0
12 TraesCS1B01G335000 chr1D 80.513 585 63 21 5380 5938 416041885 416041326 9.270000e-108 401.0
13 TraesCS1B01G335000 chr1D 82.850 379 39 7 4774 5133 415790226 415789855 3.450000e-82 316.0
14 TraesCS1B01G335000 chr1D 87.063 286 27 5 4820 5096 415538336 415538052 1.240000e-81 315.0
15 TraesCS1B01G335000 chr1D 93.464 153 10 0 4626 4778 416098747 416098595 1.660000e-55 228.0
16 TraesCS1B01G335000 chr1D 90.110 182 9 5 1388 1569 416102062 416101890 1.660000e-55 228.0
17 TraesCS1B01G335000 chr1D 92.857 154 11 0 4677 4830 416098798 416098645 2.150000e-54 224.0
18 TraesCS1B01G335000 chr1D 87.912 182 13 6 5380 5557 415764236 415764060 7.800000e-49 206.0
19 TraesCS1B01G335000 chr1D 85.641 195 21 2 4940 5127 415709389 415709195 1.310000e-46 198.0
20 TraesCS1B01G335000 chr1D 93.846 130 7 1 5180 5308 416042008 416041879 1.690000e-45 195.0
21 TraesCS1B01G335000 chr1D 78.758 306 41 12 5564 5847 415763966 415763663 3.660000e-42 183.0
22 TraesCS1B01G335000 chr1D 87.931 116 12 2 5156 5270 416081245 416081131 1.040000e-27 135.0
23 TraesCS1B01G335000 chr1D 79.104 201 25 11 5075 5266 416096185 416095993 8.080000e-24 122.0
24 TraesCS1B01G335000 chr1D 86.364 110 11 3 5414 5521 416039368 416039261 3.760000e-22 117.0
25 TraesCS1B01G335000 chr1A 96.215 2563 81 9 2726 5284 513625475 513622925 0.000000e+00 4181.0
26 TraesCS1B01G335000 chr1A 86.344 681 68 10 4 680 513627928 513627269 0.000000e+00 719.0
27 TraesCS1B01G335000 chr1A 89.354 526 47 6 1887 2409 513626230 513625711 0.000000e+00 652.0
28 TraesCS1B01G335000 chr1A 83.554 529 66 15 4730 5241 513533717 513533193 5.380000e-130 475.0
29 TraesCS1B01G335000 chr1A 81.058 586 66 25 5380 5938 513622914 513622347 5.500000e-115 425.0
30 TraesCS1B01G335000 chr1A 93.130 262 15 3 2442 2700 513625721 513625460 1.210000e-101 381.0
31 TraesCS1B01G335000 chr1A 87.500 312 27 4 1572 1883 513626473 513626174 3.410000e-92 350.0
32 TraesCS1B01G335000 chr1A 88.462 208 11 6 1375 1569 513626725 513626518 7.690000e-59 239.0
33 TraesCS1B01G335000 chr1A 91.720 157 10 1 4677 4830 513623587 513623431 1.300000e-51 215.0
34 TraesCS1B01G335000 chr1A 89.809 157 13 2 4626 4779 513623536 513623380 1.310000e-46 198.0
35 TraesCS1B01G335000 chr1A 79.085 306 40 15 5564 5847 513570323 513570020 7.860000e-44 189.0
36 TraesCS1B01G335000 chr1A 91.525 118 4 4 5443 5557 513570531 513570417 2.220000e-34 158.0
37 TraesCS1B01G335000 chr1A 90.361 83 6 2 2647 2728 487729166 487729247 2.260000e-19 108.0
38 TraesCS1B01G335000 chr1A 79.851 134 18 6 5075 5206 513621011 513620885 8.200000e-14 89.8
39 TraesCS1B01G335000 chr4A 91.623 191 14 2 1380 1569 636216688 636216499 4.560000e-66 263.0
40 TraesCS1B01G335000 chr4A 86.243 189 14 1 1568 1756 636216458 636216282 1.690000e-45 195.0
41 TraesCS1B01G335000 chr4B 90.000 190 19 0 1380 1569 654695727 654695538 4.600000e-61 246.0
42 TraesCS1B01G335000 chr7A 89.418 189 18 2 1382 1569 348725277 348725464 2.770000e-58 237.0
43 TraesCS1B01G335000 chr7A 85.714 189 15 1 1568 1756 348725505 348725681 7.860000e-44 189.0
44 TraesCS1B01G335000 chr3A 83.268 257 38 5 475 730 552308057 552307805 1.290000e-56 231.0
45 TraesCS1B01G335000 chr5D 84.167 240 31 6 482 719 514488997 514488763 5.990000e-55 226.0
46 TraesCS1B01G335000 chr5D 84.874 119 13 5 2644 2758 272364555 272364672 1.350000e-21 115.0
47 TraesCS1B01G335000 chr7D 81.275 251 40 5 481 730 186403126 186402882 4.690000e-46 196.0
48 TraesCS1B01G335000 chr7D 80.400 250 43 5 481 730 436498957 436499200 1.020000e-42 185.0
49 TraesCS1B01G335000 chr7B 81.275 251 39 5 481 730 329085085 329084842 4.690000e-46 196.0
50 TraesCS1B01G335000 chr6A 75.592 422 89 11 4080 4491 435250204 435250621 4.690000e-46 196.0
51 TraesCS1B01G335000 chr6A 80.162 247 43 4 481 726 73667202 73666961 4.730000e-41 180.0
52 TraesCS1B01G335000 chr6A 84.328 134 21 0 2190 2323 435248372 435248505 1.340000e-26 132.0
53 TraesCS1B01G335000 chr6B 75.061 413 86 14 4089 4491 450639114 450638709 6.120000e-40 176.0
54 TraesCS1B01G335000 chr2D 78.656 253 48 6 478 730 621504731 621504485 4.760000e-36 163.0
55 TraesCS1B01G335000 chr2D 82.927 123 8 6 2651 2760 353067985 353067863 1.360000e-16 99.0
56 TraesCS1B01G335000 chr5B 90.244 82 6 1 2647 2726 74996011 74996092 8.140000e-19 106.0
57 TraesCS1B01G335000 chr5B 86.139 101 10 4 2652 2750 308558370 308558468 8.140000e-19 106.0
58 TraesCS1B01G335000 chr5B 90.909 66 6 0 1568 1633 488979246 488979311 8.200000e-14 89.8
59 TraesCS1B01G335000 chr5B 97.619 42 1 0 2735 2776 192863406 192863447 8.250000e-09 73.1
60 TraesCS1B01G335000 chr5A 89.474 76 5 2 2652 2725 59707886 59707960 6.340000e-15 93.5
61 TraesCS1B01G335000 chr5A 97.619 42 1 0 2735 2776 237461640 237461681 8.250000e-09 73.1
62 TraesCS1B01G335000 chr5A 100.000 32 0 0 5309 5340 165257793 165257762 6.430000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G335000 chr1B 562373671 562379608 5937 True 2695.250000 8432 96.4285 1 5938 4 chr1B.!!$R3 5937
1 TraesCS1B01G335000 chr1D 416095993 416103295 7302 True 1483.833333 7166 89.3695 4 5938 6 chr1D.!!$R7 5934
2 TraesCS1B01G335000 chr1D 416039261 416042860 3599 True 280.500000 409 86.4245 4732 5938 4 chr1D.!!$R6 1206
3 TraesCS1B01G335000 chr1A 513620885 513627928 7043 True 744.980000 4181 88.3443 4 5938 10 chr1A.!!$R3 5934
4 TraesCS1B01G335000 chr1A 513533193 513533717 524 True 475.000000 475 83.5540 4730 5241 1 chr1A.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 806 0.248289 CGACGTGTACCCCCTGATTT 59.752 55.0 0.00 0.0 0.00 2.17 F
1569 1810 0.042731 ATCGTGAAAGAGGGGGAGGA 59.957 55.0 0.00 0.0 0.00 3.71 F
1570 1811 0.042731 TCGTGAAAGAGGGGGAGGAT 59.957 55.0 0.00 0.0 0.00 3.24 F
2042 2331 0.252881 TGAGATGAGTTCTGGGGCCT 60.253 55.0 0.84 0.0 33.74 5.19 F
2094 2383 0.793617 AAGGAGGAGGAGGAGGACAA 59.206 55.0 0.00 0.0 0.00 3.18 F
3881 4173 0.033504 AGTCACAGCGTCGTTTCCAT 59.966 50.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 2201 0.037326 CAGCGTCAACAGAAGCCCTA 60.037 55.0 0.00 0.0 37.46 3.53 R
2412 2701 0.462581 TGCTAGCAAGGGATTCGCAG 60.463 55.0 16.84 0.0 0.00 5.18 R
2414 2703 0.590195 CATGCTAGCAAGGGATTCGC 59.410 55.0 23.54 0.0 0.00 4.70 R
3881 4173 1.106944 TGTCAGCCATATCCGAGCGA 61.107 55.0 0.00 0.0 0.00 4.93 R
4076 4368 0.676466 TTGTTGGTGCGCTCATAGGG 60.676 55.0 9.73 0.0 0.00 3.53 R
5024 5319 1.071605 CTGCTCCTTTGCGAGTACAC 58.928 55.0 0.00 0.0 35.36 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 1.294138 CACCCCGTCAACACCGTAT 59.706 57.895 0.00 0.00 0.00 3.06
105 106 0.804989 GTTGTAGCTCATGTGTGCCC 59.195 55.000 0.00 0.00 35.33 5.36
106 107 0.399833 TTGTAGCTCATGTGTGCCCA 59.600 50.000 0.00 0.00 35.33 5.36
127 128 2.280079 GGGGAAATGAGGGGCTGG 59.720 66.667 0.00 0.00 0.00 4.85
137 138 3.670377 GGGGCTGGTTGTTGTCGC 61.670 66.667 0.00 0.00 0.00 5.19
144 145 0.743688 TGGTTGTTGTCGCATTTGCT 59.256 45.000 0.51 0.00 39.32 3.91
146 147 1.535860 GGTTGTTGTCGCATTTGCTGT 60.536 47.619 0.51 0.00 39.32 4.40
150 151 1.264020 GTTGTCGCATTTGCTGTCTGA 59.736 47.619 0.51 0.00 39.32 3.27
230 231 0.618680 AGCAGTAGGGCCTCATCACA 60.619 55.000 10.74 0.00 0.00 3.58
242 243 4.002506 ATCACACCGCTCACCGCA 62.003 61.111 0.00 0.00 39.08 5.69
246 247 4.969196 CACCGCTCACCGCAGTGT 62.969 66.667 0.00 0.00 44.83 3.55
278 279 4.153117 GCAACAATGAAGAAGACGAGATGT 59.847 41.667 0.00 0.00 0.00 3.06
297 298 3.218453 TGTGGCAAAGATCGAGGAAAAA 58.782 40.909 0.00 0.00 0.00 1.94
303 304 2.301577 AGATCGAGGAAAAAGAGCGG 57.698 50.000 0.00 0.00 0.00 5.52
305 306 1.084370 ATCGAGGAAAAAGAGCGGCG 61.084 55.000 0.51 0.51 0.00 6.46
309 310 1.026718 AGGAAAAAGAGCGGCGGATG 61.027 55.000 9.78 0.00 0.00 3.51
333 335 2.997897 GTGGAGGAGACAGGCCGT 60.998 66.667 0.00 0.00 0.00 5.68
337 339 1.671742 GAGGAGACAGGCCGTGAAA 59.328 57.895 4.94 0.00 0.00 2.69
344 346 3.600388 AGACAGGCCGTGAAAGAATAAG 58.400 45.455 4.94 0.00 0.00 1.73
356 358 4.409247 TGAAAGAATAAGGTAGGAGAGGGC 59.591 45.833 0.00 0.00 0.00 5.19
369 371 4.889112 AGGGCCGAGCATGCATGG 62.889 66.667 27.34 21.13 0.00 3.66
378 380 1.983481 GCATGCATGGACCCCACAA 60.983 57.895 27.34 0.00 35.80 3.33
379 381 1.892338 CATGCATGGACCCCACAAC 59.108 57.895 19.40 0.00 35.80 3.32
380 382 0.899253 CATGCATGGACCCCACAACA 60.899 55.000 19.40 0.00 35.80 3.33
425 427 1.129809 GACGAATGTCGCACAACGG 59.870 57.895 16.28 4.51 45.12 4.44
427 429 2.175811 GAATGTCGCACAACGGGC 59.824 61.111 0.00 0.00 43.89 6.13
478 482 5.324739 CGTCACAAACGTTTATTCTCTGT 57.675 39.130 14.20 3.26 46.42 3.41
479 483 5.363517 CGTCACAAACGTTTATTCTCTGTC 58.636 41.667 14.20 0.00 46.42 3.51
481 485 5.465724 GTCACAAACGTTTATTCTCTGTCCT 59.534 40.000 14.20 0.00 0.00 3.85
493 497 1.993370 CTCTGTCCTTTTTACTCCGCG 59.007 52.381 0.00 0.00 0.00 6.46
610 616 8.706492 ATATGCGTCATGAATTCAATTTTTGT 57.294 26.923 13.09 0.23 0.00 2.83
614 620 7.811713 TGCGTCATGAATTCAATTTTTGTATCA 59.188 29.630 13.09 3.24 0.00 2.15
705 711 9.672086 TTAACTTCAGACAAATTTTATGTTCGG 57.328 29.630 0.00 0.00 0.00 4.30
706 712 7.504924 ACTTCAGACAAATTTTATGTTCGGA 57.495 32.000 0.00 0.00 0.00 4.55
707 713 7.584987 ACTTCAGACAAATTTTATGTTCGGAG 58.415 34.615 0.00 0.00 0.00 4.63
708 714 7.228706 ACTTCAGACAAATTTTATGTTCGGAGT 59.771 33.333 0.00 0.00 0.00 3.85
709 715 8.610248 TTCAGACAAATTTTATGTTCGGAGTA 57.390 30.769 0.00 0.00 0.00 2.59
710 716 8.610248 TCAGACAAATTTTATGTTCGGAGTAA 57.390 30.769 0.00 0.00 0.00 2.24
711 717 9.058174 TCAGACAAATTTTATGTTCGGAGTAAA 57.942 29.630 0.00 0.00 0.00 2.01
712 718 9.672086 CAGACAAATTTTATGTTCGGAGTAAAA 57.328 29.630 0.00 7.19 33.41 1.52
715 721 9.471084 ACAAATTTTATGTTCGGAGTAAAAAGG 57.529 29.630 0.00 5.37 32.84 3.11
716 722 9.685828 CAAATTTTATGTTCGGAGTAAAAAGGA 57.314 29.630 0.00 0.00 32.84 3.36
717 723 9.687210 AAATTTTATGTTCGGAGTAAAAAGGAC 57.313 29.630 8.23 0.00 32.84 3.85
718 724 6.806388 TTTATGTTCGGAGTAAAAAGGACC 57.194 37.500 0.00 0.00 0.00 4.46
719 725 3.130280 TGTTCGGAGTAAAAAGGACCC 57.870 47.619 0.00 0.00 0.00 4.46
720 726 2.071540 GTTCGGAGTAAAAAGGACCCG 58.928 52.381 0.00 0.00 38.41 5.28
721 727 1.631405 TCGGAGTAAAAAGGACCCGA 58.369 50.000 0.00 0.00 42.92 5.14
722 728 1.547372 TCGGAGTAAAAAGGACCCGAG 59.453 52.381 0.00 0.00 40.69 4.63
723 729 1.405121 CGGAGTAAAAAGGACCCGAGG 60.405 57.143 0.00 0.00 39.31 4.63
724 730 1.065636 GGAGTAAAAAGGACCCGAGGG 60.066 57.143 6.63 6.63 42.03 4.30
758 764 1.807165 GAGCGCTGAGATTCGTGCA 60.807 57.895 18.48 0.00 39.01 4.57
766 772 4.210304 GATTCGTGCAGCGCGGAC 62.210 66.667 27.26 12.61 41.07 4.79
778 784 4.338539 GCGGACCTGTCGACGTGT 62.339 66.667 11.62 10.33 0.00 4.49
779 785 2.969806 GCGGACCTGTCGACGTGTA 61.970 63.158 11.62 0.00 0.00 2.90
780 786 1.154338 CGGACCTGTCGACGTGTAC 60.154 63.158 11.62 10.09 0.00 2.90
790 806 0.248289 CGACGTGTACCCCCTGATTT 59.752 55.000 0.00 0.00 0.00 2.17
807 823 2.742710 TTTGCGGACGGAGACACTCG 62.743 60.000 0.00 0.00 0.00 4.18
831 852 2.280524 CCCACCACGCGAGAACAA 60.281 61.111 15.93 0.00 0.00 2.83
848 869 0.873054 CAACACAGAGCAGAGCAAGG 59.127 55.000 0.00 0.00 0.00 3.61
871 892 3.216371 TTCCCCACCCTCCTCCCT 61.216 66.667 0.00 0.00 0.00 4.20
872 893 3.268647 TTCCCCACCCTCCTCCCTC 62.269 68.421 0.00 0.00 0.00 4.30
927 948 1.956636 GCCTAAAACCCTAAACCCCCG 60.957 57.143 0.00 0.00 0.00 5.73
928 949 1.634973 CCTAAAACCCTAAACCCCCGA 59.365 52.381 0.00 0.00 0.00 5.14
929 950 2.356432 CCTAAAACCCTAAACCCCCGAG 60.356 54.545 0.00 0.00 0.00 4.63
932 953 3.805497 CCCTAAACCCCCGAGCCC 61.805 72.222 0.00 0.00 0.00 5.19
933 954 4.171103 CCTAAACCCCCGAGCCCG 62.171 72.222 0.00 0.00 0.00 6.13
934 955 3.078836 CTAAACCCCCGAGCCCGA 61.079 66.667 0.00 0.00 38.22 5.14
935 956 3.078836 TAAACCCCCGAGCCCGAG 61.079 66.667 0.00 0.00 38.22 4.63
936 957 3.605412 TAAACCCCCGAGCCCGAGA 62.605 63.158 0.00 0.00 38.22 4.04
937 958 2.884179 TAAACCCCCGAGCCCGAGAT 62.884 60.000 0.00 0.00 38.22 2.75
973 998 4.083862 GCCGCCTCTCCGAAACCT 62.084 66.667 0.00 0.00 0.00 3.50
1555 1796 0.893270 TGGGCTTGGACCAAATCGTG 60.893 55.000 8.59 0.00 38.06 4.35
1558 1799 1.611491 GGCTTGGACCAAATCGTGAAA 59.389 47.619 8.59 0.00 0.00 2.69
1569 1810 0.042731 ATCGTGAAAGAGGGGGAGGA 59.957 55.000 0.00 0.00 0.00 3.71
1570 1811 0.042731 TCGTGAAAGAGGGGGAGGAT 59.957 55.000 0.00 0.00 0.00 3.24
1700 1986 1.533625 TTTCGTTGCAGAAGGGGATG 58.466 50.000 0.00 0.00 0.00 3.51
1781 2067 0.533491 TACCGTAGCTGCCGTTCATT 59.467 50.000 0.00 0.00 0.00 2.57
1804 2090 2.417936 GCTAGCACCGTAGCTCCC 59.582 66.667 10.63 0.00 45.26 4.30
1851 2137 2.422479 CTGCTGTTGCTGCTGACAATAT 59.578 45.455 0.00 0.00 40.48 1.28
1871 2157 3.769739 TTACCATGTCTGCTGTTGACT 57.230 42.857 0.00 0.00 35.63 3.41
1911 2197 1.482182 TGCTGTTCATGCCGAGACTAT 59.518 47.619 0.00 0.00 0.00 2.12
1915 2201 4.737946 GCTGTTCATGCCGAGACTATTACT 60.738 45.833 0.00 0.00 0.00 2.24
1916 2202 5.507482 GCTGTTCATGCCGAGACTATTACTA 60.507 44.000 0.00 0.00 0.00 1.82
1943 2232 0.318120 TGTTGACGCTGAGATGAGCA 59.682 50.000 0.00 0.00 39.07 4.26
1947 2236 3.260483 CGCTGAGATGAGCACCGC 61.260 66.667 0.00 0.00 39.07 5.68
1984 2273 3.144506 TGATACTAGTACCGTAGCTGCC 58.855 50.000 4.31 0.00 0.00 4.85
2007 2296 5.451381 CCGTTGATGCTGATACTAGTACCAA 60.451 44.000 4.31 0.00 0.00 3.67
2042 2331 0.252881 TGAGATGAGTTCTGGGGCCT 60.253 55.000 0.84 0.00 33.74 5.19
2068 2357 1.903877 ATGAGGAAGTGGAGCGTGGG 61.904 60.000 0.00 0.00 0.00 4.61
2080 2369 4.101448 CGTGGGGGAGGCAAGGAG 62.101 72.222 0.00 0.00 0.00 3.69
2081 2370 3.732849 GTGGGGGAGGCAAGGAGG 61.733 72.222 0.00 0.00 0.00 4.30
2082 2371 3.953652 TGGGGGAGGCAAGGAGGA 61.954 66.667 0.00 0.00 0.00 3.71
2092 2381 1.334384 GCAAGGAGGAGGAGGAGGAC 61.334 65.000 0.00 0.00 0.00 3.85
2094 2383 0.793617 AAGGAGGAGGAGGAGGACAA 59.206 55.000 0.00 0.00 0.00 3.18
2119 2408 1.271102 GACAAAGAGTCGGAGAGCAGT 59.729 52.381 0.00 0.00 36.95 4.40
2232 2521 0.982704 AGCAGTGATGAGGAAGTGCT 59.017 50.000 0.00 0.00 45.92 4.40
2303 2592 1.073923 AGGGTGAACTGATGGTTGGAC 59.926 52.381 0.00 0.00 38.41 4.02
2385 2674 8.351461 AGTAGAGGTATTAAGTTTATCTCACGC 58.649 37.037 0.00 0.00 0.00 5.34
2401 2690 1.301244 CGCTGTGCACCTCTCTTGT 60.301 57.895 15.69 0.00 0.00 3.16
2412 2701 5.357314 TGCACCTCTCTTGTGTCTAGTATAC 59.643 44.000 0.00 0.00 36.11 1.47
2414 2703 6.459024 GCACCTCTCTTGTGTCTAGTATACTG 60.459 46.154 15.90 5.89 36.11 2.74
2415 2704 5.591067 ACCTCTCTTGTGTCTAGTATACTGC 59.409 44.000 15.90 6.35 0.00 4.40
2421 2710 5.434352 TGTGTCTAGTATACTGCGAATCC 57.566 43.478 15.90 1.91 0.00 3.01
2429 2718 2.890808 TACTGCGAATCCCTTGCTAG 57.109 50.000 0.00 0.00 0.00 3.42
2462 2751 4.826274 TTGGTTCTAGTTAGATGCAGCT 57.174 40.909 10.44 10.44 31.40 4.24
2648 2940 1.856802 GCTCAGTTGCCAAAAACCAG 58.143 50.000 0.00 0.00 0.00 4.00
2705 2997 1.269413 CCACTGCCTTGTGCTTTTCTG 60.269 52.381 0.00 0.00 42.00 3.02
2733 3025 1.597195 CGCACACTTAAGCACTTGACA 59.403 47.619 1.29 0.00 0.00 3.58
2871 3163 8.615360 AGATGTACCATATATCTTGCAGGTAT 57.385 34.615 0.00 0.00 33.52 2.73
2909 3201 2.136298 TTGAAGTGCAGTTGGAACCA 57.864 45.000 12.53 0.00 0.00 3.67
3278 3570 9.959749 TTTCCAGTGTGTTGTTAGATATTTTTC 57.040 29.630 0.00 0.00 0.00 2.29
3500 3792 6.923012 TGTTGATGAAATATTTGGACCTGTG 58.077 36.000 5.17 0.00 0.00 3.66
3881 4173 0.033504 AGTCACAGCGTCGTTTCCAT 59.966 50.000 0.00 0.00 0.00 3.41
3934 4226 5.556915 TCAGTCGGGTCAACAAAATTATCT 58.443 37.500 0.00 0.00 0.00 1.98
4076 4368 2.686405 ACAAACGGGTCCTCAAAACTTC 59.314 45.455 0.00 0.00 0.00 3.01
4506 4798 3.289407 TTGGTCAGTTTCCACACATGA 57.711 42.857 0.00 0.00 34.45 3.07
4519 4811 0.038892 CACATGACTGGCAACCAAGC 60.039 55.000 0.00 0.00 30.80 4.01
4727 5022 2.289002 GCCTCCTATGCAGTTCAATTCG 59.711 50.000 0.00 0.00 0.00 3.34
4742 5037 0.180406 ATTCGCTACCATCACCCCAC 59.820 55.000 0.00 0.00 0.00 4.61
4787 5082 2.222819 GCAGTTCAATTCGCTACCTTCG 60.223 50.000 0.00 0.00 0.00 3.79
4943 5238 1.802880 CGGCATCGCAAGTAGTTAGCT 60.803 52.381 0.00 0.00 39.48 3.32
4989 5284 5.202640 GTGTAATTTTGACTCGTGTTGGAC 58.797 41.667 0.00 0.00 0.00 4.02
5024 5319 0.108186 TCACAAGTATGCTGCTCCCG 60.108 55.000 0.00 0.00 0.00 5.14
5491 6191 5.853572 TTACTCCCCAGGTTATTTTGACT 57.146 39.130 0.00 0.00 0.00 3.41
5708 6455 8.619146 ATGCGATAAACACATTGTAAGAAATG 57.381 30.769 0.00 0.00 42.21 2.32
5847 6595 9.502091 AAGTACTGCATATTGAAAACAGAGTAA 57.498 29.630 0.00 0.00 32.67 2.24
5851 6599 9.463443 ACTGCATATTGAAAACAGAGTAAAAAC 57.537 29.630 0.00 0.00 32.67 2.43
5852 6600 9.462174 CTGCATATTGAAAACAGAGTAAAAACA 57.538 29.630 0.00 0.00 0.00 2.83
5853 6601 9.462174 TGCATATTGAAAACAGAGTAAAAACAG 57.538 29.630 0.00 0.00 0.00 3.16
5854 6602 9.677567 GCATATTGAAAACAGAGTAAAAACAGA 57.322 29.630 0.00 0.00 0.00 3.41
5859 6607 8.780846 TGAAAACAGAGTAAAAACAGAGTACA 57.219 30.769 0.00 0.00 0.00 2.90
5860 6608 9.391006 TGAAAACAGAGTAAAAACAGAGTACAT 57.609 29.630 0.00 0.00 0.00 2.29
5864 6612 9.915629 AACAGAGTAAAAACAGAGTACATAGAG 57.084 33.333 0.00 0.00 0.00 2.43
5865 6613 9.080097 ACAGAGTAAAAACAGAGTACATAGAGT 57.920 33.333 0.00 0.00 0.00 3.24
5905 6654 0.167470 CGAAGACCACGTAGCTCGAA 59.833 55.000 11.64 0.00 42.86 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.179078 ACGTGTTCCAACTGCGGTTA 60.179 50.000 11.38 0.00 33.88 2.85
65 66 1.904771 CAGTGATGGGGGACGCTAA 59.095 57.895 0.00 0.00 43.80 3.09
137 138 0.524862 GCCACCTCAGACAGCAAATG 59.475 55.000 0.00 0.00 0.00 2.32
144 145 2.276116 GGACGAGCCACCTCAGACA 61.276 63.158 0.00 0.00 38.00 3.41
146 147 2.680352 GGGACGAGCCACCTCAGA 60.680 66.667 0.00 0.00 38.00 3.27
150 151 2.042843 CTAGGGGACGAGCCACCT 60.043 66.667 0.00 2.07 43.05 4.00
242 243 4.386413 GTTGCCTGCTGCTACACT 57.614 55.556 0.00 0.00 43.93 3.55
246 247 1.814394 CTTCATTGTTGCCTGCTGCTA 59.186 47.619 0.00 0.00 42.00 3.49
278 279 3.750371 TCTTTTTCCTCGATCTTTGCCA 58.250 40.909 0.00 0.00 0.00 4.92
297 298 0.531532 CTCATTTCATCCGCCGCTCT 60.532 55.000 0.00 0.00 0.00 4.09
303 304 1.134401 TCCTCCACTCATTTCATCCGC 60.134 52.381 0.00 0.00 0.00 5.54
305 306 3.198635 TGTCTCCTCCACTCATTTCATCC 59.801 47.826 0.00 0.00 0.00 3.51
309 310 2.679349 GCCTGTCTCCTCCACTCATTTC 60.679 54.545 0.00 0.00 0.00 2.17
333 335 4.409247 GCCCTCTCCTACCTTATTCTTTCA 59.591 45.833 0.00 0.00 0.00 2.69
337 339 2.756919 CGGCCCTCTCCTACCTTATTCT 60.757 54.545 0.00 0.00 0.00 2.40
344 346 3.228017 GCTCGGCCCTCTCCTACC 61.228 72.222 0.00 0.00 0.00 3.18
356 358 2.903855 GGGTCCATGCATGCTCGG 60.904 66.667 21.69 18.48 0.00 4.63
399 401 3.375922 TGTGCGACATTCGTCTATGTAGA 59.624 43.478 10.43 0.00 42.81 2.59
409 411 2.474266 CCCGTTGTGCGACATTCG 59.526 61.111 0.00 0.00 44.77 3.34
425 427 4.256090 GCATCACGCCAATCCGCC 62.256 66.667 0.00 0.00 32.94 6.13
459 461 5.924475 AGGACAGAGAATAAACGTTTGTG 57.076 39.130 23.46 8.10 0.00 3.33
466 468 7.623715 GCGGAGTAAAAAGGACAGAGAATAAAC 60.624 40.741 0.00 0.00 0.00 2.01
471 473 3.660865 GCGGAGTAAAAAGGACAGAGAA 58.339 45.455 0.00 0.00 0.00 2.87
478 482 5.581126 TCTTATACGCGGAGTAAAAAGGA 57.419 39.130 12.47 0.00 39.04 3.36
479 483 6.839820 AATCTTATACGCGGAGTAAAAAGG 57.160 37.500 12.47 0.00 39.04 3.11
481 485 9.754382 AGATAAATCTTATACGCGGAGTAAAAA 57.246 29.630 12.47 0.00 34.42 1.94
570 576 9.844790 CATGACGCATATAATGATATTGGTTTT 57.155 29.630 0.00 0.00 0.00 2.43
680 686 9.058174 TCCGAACATAAAATTTGTCTGAAGTTA 57.942 29.630 0.00 0.00 0.00 2.24
681 687 7.936584 TCCGAACATAAAATTTGTCTGAAGTT 58.063 30.769 0.00 0.00 0.00 2.66
684 690 7.504924 ACTCCGAACATAAAATTTGTCTGAA 57.495 32.000 0.00 0.00 0.00 3.02
685 691 8.610248 TTACTCCGAACATAAAATTTGTCTGA 57.390 30.769 0.00 0.00 0.00 3.27
686 692 9.672086 TTTTACTCCGAACATAAAATTTGTCTG 57.328 29.630 0.00 0.00 0.00 3.51
689 695 9.471084 CCTTTTTACTCCGAACATAAAATTTGT 57.529 29.630 0.00 0.00 30.18 2.83
690 696 9.685828 TCCTTTTTACTCCGAACATAAAATTTG 57.314 29.630 0.00 0.00 30.18 2.32
691 697 9.687210 GTCCTTTTTACTCCGAACATAAAATTT 57.313 29.630 0.00 0.00 30.18 1.82
692 698 8.301720 GGTCCTTTTTACTCCGAACATAAAATT 58.698 33.333 0.00 0.00 30.18 1.82
694 700 6.207221 GGGTCCTTTTTACTCCGAACATAAAA 59.793 38.462 0.00 0.00 0.00 1.52
695 701 5.706833 GGGTCCTTTTTACTCCGAACATAAA 59.293 40.000 0.00 0.00 0.00 1.40
697 703 4.621274 CGGGTCCTTTTTACTCCGAACATA 60.621 45.833 0.00 0.00 39.83 2.29
698 704 3.682696 GGGTCCTTTTTACTCCGAACAT 58.317 45.455 0.00 0.00 0.00 2.71
699 705 2.548493 CGGGTCCTTTTTACTCCGAACA 60.548 50.000 0.00 0.00 39.83 3.18
700 706 2.071540 CGGGTCCTTTTTACTCCGAAC 58.928 52.381 0.00 0.00 39.83 3.95
701 707 1.969923 TCGGGTCCTTTTTACTCCGAA 59.030 47.619 0.00 0.00 42.69 4.30
702 708 1.547372 CTCGGGTCCTTTTTACTCCGA 59.453 52.381 0.00 0.00 43.29 4.55
703 709 1.405121 CCTCGGGTCCTTTTTACTCCG 60.405 57.143 0.00 0.00 38.92 4.63
704 710 1.065636 CCCTCGGGTCCTTTTTACTCC 60.066 57.143 0.00 0.00 0.00 3.85
705 711 1.065636 CCCCTCGGGTCCTTTTTACTC 60.066 57.143 0.55 0.00 38.25 2.59
706 712 0.989602 CCCCTCGGGTCCTTTTTACT 59.010 55.000 0.55 0.00 38.25 2.24
707 713 0.986527 TCCCCTCGGGTCCTTTTTAC 59.013 55.000 0.55 0.00 44.74 2.01
708 714 1.282382 CTCCCCTCGGGTCCTTTTTA 58.718 55.000 0.55 0.00 44.74 1.52
709 715 0.770948 ACTCCCCTCGGGTCCTTTTT 60.771 55.000 0.55 0.00 44.74 1.94
710 716 0.117742 TACTCCCCTCGGGTCCTTTT 59.882 55.000 0.55 0.00 44.74 2.27
711 717 0.616964 GTACTCCCCTCGGGTCCTTT 60.617 60.000 0.55 0.00 44.74 3.11
712 718 1.001376 GTACTCCCCTCGGGTCCTT 59.999 63.158 0.55 0.00 44.74 3.36
713 719 2.688538 GTACTCCCCTCGGGTCCT 59.311 66.667 0.55 0.00 44.74 3.85
714 720 2.443577 GGTACTCCCCTCGGGTCC 60.444 72.222 0.55 0.00 44.74 4.46
715 721 2.832201 CGGTACTCCCCTCGGGTC 60.832 72.222 0.55 0.00 44.74 4.46
716 722 3.341629 TCGGTACTCCCCTCGGGT 61.342 66.667 0.55 0.00 44.74 5.28
717 723 2.518825 CTCGGTACTCCCCTCGGG 60.519 72.222 0.00 0.00 46.11 5.14
718 724 0.682209 TTTCTCGGTACTCCCCTCGG 60.682 60.000 0.00 0.00 0.00 4.63
719 725 0.455005 GTTTCTCGGTACTCCCCTCG 59.545 60.000 0.00 0.00 0.00 4.63
720 726 0.822811 GGTTTCTCGGTACTCCCCTC 59.177 60.000 0.00 0.00 0.00 4.30
721 727 0.969409 CGGTTTCTCGGTACTCCCCT 60.969 60.000 0.00 0.00 0.00 4.79
722 728 0.967380 TCGGTTTCTCGGTACTCCCC 60.967 60.000 0.00 0.00 0.00 4.81
723 729 0.455005 CTCGGTTTCTCGGTACTCCC 59.545 60.000 0.00 0.00 0.00 4.30
724 730 0.179142 GCTCGGTTTCTCGGTACTCC 60.179 60.000 0.00 0.00 0.00 3.85
725 731 0.522915 CGCTCGGTTTCTCGGTACTC 60.523 60.000 0.00 0.00 0.00 2.59
726 732 1.505353 CGCTCGGTTTCTCGGTACT 59.495 57.895 0.00 0.00 0.00 2.73
727 733 2.157073 GCGCTCGGTTTCTCGGTAC 61.157 63.158 0.00 0.00 0.00 3.34
728 734 2.180017 GCGCTCGGTTTCTCGGTA 59.820 61.111 0.00 0.00 0.00 4.02
729 735 3.681835 AGCGCTCGGTTTCTCGGT 61.682 61.111 2.64 0.00 0.00 4.69
766 772 2.570181 GGGGTACACGTCGACAGG 59.430 66.667 17.16 9.15 0.00 4.00
767 773 1.975407 AGGGGGTACACGTCGACAG 60.975 63.158 17.16 9.92 0.00 3.51
768 774 2.115910 AGGGGGTACACGTCGACA 59.884 61.111 17.16 0.00 0.00 4.35
769 775 1.318158 ATCAGGGGGTACACGTCGAC 61.318 60.000 5.18 5.18 0.00 4.20
770 776 0.612732 AATCAGGGGGTACACGTCGA 60.613 55.000 0.00 0.00 0.00 4.20
771 777 0.248289 AAATCAGGGGGTACACGTCG 59.752 55.000 0.00 0.00 0.00 5.12
773 779 0.322187 GCAAATCAGGGGGTACACGT 60.322 55.000 0.00 0.00 0.00 4.49
776 782 1.202099 TCCGCAAATCAGGGGGTACA 61.202 55.000 0.00 0.00 41.59 2.90
777 783 0.746923 GTCCGCAAATCAGGGGGTAC 60.747 60.000 0.00 0.00 41.59 3.34
778 784 1.605453 GTCCGCAAATCAGGGGGTA 59.395 57.895 0.00 0.00 41.59 3.69
779 785 2.355115 GTCCGCAAATCAGGGGGT 59.645 61.111 0.00 0.00 41.59 4.95
780 786 2.824041 CGTCCGCAAATCAGGGGG 60.824 66.667 0.00 0.00 41.59 5.40
790 806 3.733960 CGAGTGTCTCCGTCCGCA 61.734 66.667 0.00 0.00 0.00 5.69
820 841 1.215655 GCTCTGTGTTGTTCTCGCGT 61.216 55.000 5.77 0.00 0.00 6.01
831 852 0.321021 CTCCTTGCTCTGCTCTGTGT 59.679 55.000 0.00 0.00 0.00 3.72
848 869 4.097361 GAGGGTGGGGAACGGCTC 62.097 72.222 0.00 0.00 0.00 4.70
927 948 2.872858 GTGGTTGATTTATCTCGGGCTC 59.127 50.000 0.00 0.00 0.00 4.70
928 949 2.421529 GGTGGTTGATTTATCTCGGGCT 60.422 50.000 0.00 0.00 0.00 5.19
929 950 1.947456 GGTGGTTGATTTATCTCGGGC 59.053 52.381 0.00 0.00 0.00 6.13
932 953 3.565482 CCATGGGTGGTTGATTTATCTCG 59.435 47.826 2.85 0.00 40.83 4.04
1454 1683 2.124942 GAGGCCGAAGCTCTTGGG 60.125 66.667 0.00 6.34 40.80 4.12
1496 1737 0.170116 GACGCAAAATCAATCCCGCA 59.830 50.000 0.00 0.00 0.00 5.69
1555 1796 0.472044 GAGCATCCTCCCCCTCTTTC 59.528 60.000 0.00 0.00 31.68 2.62
1653 1939 3.953775 CCAACACGGGAGGCTGGT 61.954 66.667 0.00 0.00 0.00 4.00
1700 1986 2.679996 AATCGCTGCCCCCAAACC 60.680 61.111 0.00 0.00 0.00 3.27
1723 2009 3.092301 AGCAGCTACAGTACACATCTCA 58.908 45.455 0.00 0.00 0.00 3.27
1804 2090 1.326852 GCACTCATCTCAGCATCAACG 59.673 52.381 0.00 0.00 0.00 4.10
1851 2137 3.324846 AGAGTCAACAGCAGACATGGTAA 59.675 43.478 0.00 0.00 38.46 2.85
1884 2170 0.740868 GGCATGAACAGCAGCTACGA 60.741 55.000 0.00 0.00 0.00 3.43
1911 2197 2.353406 GCGTCAACAGAAGCCCTAGTAA 60.353 50.000 0.00 0.00 31.74 2.24
1915 2201 0.037326 CAGCGTCAACAGAAGCCCTA 60.037 55.000 0.00 0.00 37.46 3.53
1916 2202 1.302033 CAGCGTCAACAGAAGCCCT 60.302 57.895 0.00 0.00 37.46 5.19
1958 2247 6.604012 CAGCTACGGTACTAGTATCAGAATG 58.396 44.000 13.53 3.66 37.54 2.67
1961 2250 4.063689 GCAGCTACGGTACTAGTATCAGA 58.936 47.826 13.53 0.00 0.00 3.27
1984 2273 5.183014 TGGTACTAGTATCAGCATCAACG 57.817 43.478 11.96 0.00 0.00 4.10
2007 2296 3.345508 TCTCAGCATCAACAGAAGCAT 57.654 42.857 0.00 0.00 0.00 3.79
2042 2331 3.686016 GCTCCACTTCCTCATTTACCAA 58.314 45.455 0.00 0.00 0.00 3.67
2068 2357 2.041265 TCCTCCTCCTTGCCTCCC 59.959 66.667 0.00 0.00 0.00 4.30
2079 2368 1.650528 CTTGTTGTCCTCCTCCTCCT 58.349 55.000 0.00 0.00 0.00 3.69
2080 2369 0.615850 CCTTGTTGTCCTCCTCCTCC 59.384 60.000 0.00 0.00 0.00 4.30
2081 2370 1.276705 GTCCTTGTTGTCCTCCTCCTC 59.723 57.143 0.00 0.00 0.00 3.71
2082 2371 1.353091 GTCCTTGTTGTCCTCCTCCT 58.647 55.000 0.00 0.00 0.00 3.69
2092 2381 2.802816 CTCCGACTCTTTGTCCTTGTTG 59.197 50.000 0.00 0.00 42.49 3.33
2094 2383 2.297597 CTCTCCGACTCTTTGTCCTTGT 59.702 50.000 0.00 0.00 42.49 3.16
2119 2408 5.431765 GCTTCACTTAATTCCTCATCCTCA 58.568 41.667 0.00 0.00 0.00 3.86
2232 2521 1.617850 CACTATGCTTTTTGGCCACCA 59.382 47.619 3.88 0.00 0.00 4.17
2290 2579 0.898320 CCTCGAGTCCAACCATCAGT 59.102 55.000 12.31 0.00 0.00 3.41
2303 2592 2.095314 CGTCATCATCCTCATCCTCGAG 60.095 54.545 5.13 5.13 0.00 4.04
2385 2674 1.069823 AGACACAAGAGAGGTGCACAG 59.930 52.381 20.43 1.46 39.87 3.66
2401 2690 4.726583 AGGGATTCGCAGTATACTAGACA 58.273 43.478 4.74 1.17 0.00 3.41
2412 2701 0.462581 TGCTAGCAAGGGATTCGCAG 60.463 55.000 16.84 0.00 0.00 5.18
2414 2703 0.590195 CATGCTAGCAAGGGATTCGC 59.410 55.000 23.54 0.00 0.00 4.70
2415 2704 1.959042 ACATGCTAGCAAGGGATTCG 58.041 50.000 23.54 5.47 0.00 3.34
2421 2710 5.126061 ACCAAATTCTAACATGCTAGCAAGG 59.874 40.000 23.54 19.00 0.00 3.61
2429 2718 9.162764 TCTAACTAGAACCAAATTCTAACATGC 57.837 33.333 0.00 0.00 46.96 4.06
2499 2790 9.778741 CATTAACTTCTACTGGGCTATCAATTA 57.221 33.333 0.00 0.00 0.00 1.40
2542 2834 6.008960 AGAAAGTGCAGGATTTTCAGAAGAT 58.991 36.000 11.67 0.00 33.69 2.40
2705 2997 1.663161 GCTTAAGTGTGCGCTTTGGTC 60.663 52.381 9.73 0.00 0.00 4.02
2813 3105 9.487790 GAATAGAGATACAATCAAGGAAGAAGG 57.512 37.037 0.00 0.00 0.00 3.46
2871 3163 5.060427 TCAATCTTTGGAACTGGAGGAAA 57.940 39.130 0.00 0.00 0.00 3.13
3055 3347 6.994496 ACGGTGACTGATTAAATCATCATCAT 59.006 34.615 0.00 0.00 38.85 2.45
3171 3463 6.594788 ACACTTACAAATTCCAGAATGCAT 57.405 33.333 0.00 0.00 31.97 3.96
3278 3570 5.941555 AACAAGAACCCCTATCTGTCTAG 57.058 43.478 0.00 0.00 0.00 2.43
3500 3792 5.391629 CCGCACAAGATAGTAAGGGTTTTTC 60.392 44.000 0.00 0.00 0.00 2.29
3881 4173 1.106944 TGTCAGCCATATCCGAGCGA 61.107 55.000 0.00 0.00 0.00 4.93
3934 4226 2.615391 TGTCCCTTGGTGTACTCATCA 58.385 47.619 0.00 0.00 32.32 3.07
4076 4368 0.676466 TTGTTGGTGCGCTCATAGGG 60.676 55.000 9.73 0.00 0.00 3.53
4373 4665 2.739609 GCTCCCTGGCATAAATTGTTGC 60.740 50.000 4.65 4.65 38.14 4.17
4433 4725 4.142160 GCCTGACCAAAAGGATGATTTACC 60.142 45.833 0.00 0.00 36.91 2.85
4727 5022 2.189521 CCGTGGGGTGATGGTAGC 59.810 66.667 0.00 0.00 0.00 3.58
4742 5037 1.760086 AGGCTGACCTCCATCTCCG 60.760 63.158 0.00 0.00 46.34 4.63
4787 5082 3.866582 CCTCCATCTCCACGGGGC 61.867 72.222 0.00 0.00 0.00 5.80
4818 5113 5.476091 TTAAACTGCCCCGAATTGAATTT 57.524 34.783 0.00 0.00 0.00 1.82
5024 5319 1.071605 CTGCTCCTTTGCGAGTACAC 58.928 55.000 0.00 0.00 35.36 2.90
5384 6084 7.658179 ACAGCATATAGTACCATTGAATTCG 57.342 36.000 0.04 0.00 0.00 3.34
5708 6455 4.037446 TCCTTTTATTGTGAACCTGTGTGC 59.963 41.667 0.00 0.00 0.00 4.57
5886 6635 0.167470 TTCGAGCTACGTGGTCTTCG 59.833 55.000 13.36 13.36 43.13 3.79
5905 6654 9.938280 AATGAAATCACAAAATGAACTGATGAT 57.062 25.926 0.00 0.00 41.93 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.