Multiple sequence alignment - TraesCS1B01G334800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G334800 chr1B 100.000 2843 0 0 1 2843 561722482 561719640 0.000000e+00 5251.0
1 TraesCS1B01G334800 chr1B 100.000 48 0 0 1854 1901 561720577 561720530 3.900000e-14 89.8
2 TraesCS1B01G334800 chr1B 100.000 48 0 0 1906 1953 561720629 561720582 3.900000e-14 89.8
3 TraesCS1B01G334800 chr1A 92.233 1133 40 16 869 1953 512894541 512893409 0.000000e+00 1561.0
4 TraesCS1B01G334800 chr1A 84.699 1013 63 50 1854 2823 512893456 512892493 0.000000e+00 928.0
5 TraesCS1B01G334800 chr1A 95.510 490 18 2 370 855 513118105 513117616 0.000000e+00 780.0
6 TraesCS1B01G334800 chr1A 95.161 372 18 0 1 372 513118556 513118185 3.160000e-164 588.0
7 TraesCS1B01G334800 chr1A 97.917 48 0 1 1854 1901 512893404 512893358 6.530000e-12 82.4
8 TraesCS1B01G334800 chr3A 91.987 624 41 3 1285 1900 738852723 738853345 0.000000e+00 867.0
9 TraesCS1B01G334800 chr6A 93.750 48 3 0 394 441 97802067 97802114 3.930000e-09 73.1
10 TraesCS1B01G334800 chr6D 91.667 48 4 0 394 441 81223031 81223078 1.830000e-07 67.6
11 TraesCS1B01G334800 chr6B 91.667 48 4 0 394 441 155752944 155752991 1.830000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G334800 chr1B 561719640 561722482 2842 True 1810.200000 5251 100.000000 1 2843 3 chr1B.!!$R1 2842
1 TraesCS1B01G334800 chr1A 512892493 512894541 2048 True 857.133333 1561 91.616333 869 2823 3 chr1A.!!$R1 1954
2 TraesCS1B01G334800 chr1A 513117616 513118556 940 True 684.000000 780 95.335500 1 855 2 chr1A.!!$R2 854
3 TraesCS1B01G334800 chr3A 738852723 738853345 622 False 867.000000 867 91.987000 1285 1900 1 chr3A.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 1010 0.035152 TCTGGACTAGGGTTCGCGTA 60.035 55.0 5.77 0.0 0.0 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 2195 0.03438 AGCAGTGCTAGAGTACCGGA 60.034 55.0 18.11 0.0 36.99 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.895404 AGCAAAGCAATGTGAACCATCT 59.105 40.909 0.00 0.00 31.75 2.90
98 99 9.252962 GTACACTGTAAATAATAATACCTGCGT 57.747 33.333 0.00 0.00 0.00 5.24
107 108 5.801531 AATAATACCTGCGTCTGTCCATA 57.198 39.130 0.00 0.00 0.00 2.74
116 117 2.542824 GCGTCTGTCCATAGAAGAGAGC 60.543 54.545 0.00 0.00 0.00 4.09
122 123 3.034635 GTCCATAGAAGAGAGCCCAAGA 58.965 50.000 0.00 0.00 0.00 3.02
133 134 0.905357 AGCCCAAGAGCTTCGTACAT 59.095 50.000 0.00 0.00 41.41 2.29
152 153 4.267536 ACATGTCATCACCCAATTCTCTG 58.732 43.478 0.00 0.00 0.00 3.35
219 220 2.159653 CGATACAACTCCTGCAACTTGC 60.160 50.000 6.82 6.82 45.29 4.01
233 234 3.731089 CAACTTGCAACACATCCCATTT 58.269 40.909 0.00 0.00 0.00 2.32
274 275 8.755018 CAATTGAAATCTAACAACCTCACAAAC 58.245 33.333 0.00 0.00 0.00 2.93
291 292 9.360093 CCTCACAAACATTACTAGAGAAAGTAG 57.640 37.037 0.00 0.00 33.62 2.57
337 338 6.212791 GCCTATCACTTTATGACTACCCCATA 59.787 42.308 0.00 0.00 41.24 2.74
347 348 2.756760 GACTACCCCATACAACACGAGA 59.243 50.000 0.00 0.00 0.00 4.04
353 354 2.412870 CCATACAACACGAGACTGCAA 58.587 47.619 0.00 0.00 0.00 4.08
424 507 8.186163 TGATTGCTCAATGATTGATTGTTCTAC 58.814 33.333 8.50 0.00 42.06 2.59
427 510 6.036408 TGCTCAATGATTGATTGTTCTACGAG 59.964 38.462 8.50 0.00 42.06 4.18
434 517 7.378966 TGATTGATTGTTCTACGAGAAAGTCT 58.621 34.615 0.00 0.00 35.75 3.24
436 519 4.923871 TGATTGTTCTACGAGAAAGTCTGC 59.076 41.667 0.00 0.00 35.75 4.26
482 565 9.820229 CTGCTTTTGTACAAAAATAACTATCGA 57.180 29.630 28.52 7.76 39.49 3.59
746 829 1.939974 TCAGCTATGACCGCATCAAC 58.060 50.000 0.00 0.00 41.93 3.18
774 857 3.168773 CCCATCACCGTAGTTTGGG 57.831 57.895 0.00 0.00 41.02 4.12
789 872 0.774908 TTGGGTTCCCGTCCTCAAAT 59.225 50.000 3.27 0.00 0.00 2.32
802 885 3.255642 GTCCTCAAATGCTGCCTACAAAA 59.744 43.478 0.00 0.00 0.00 2.44
803 886 3.507233 TCCTCAAATGCTGCCTACAAAAG 59.493 43.478 0.00 0.00 0.00 2.27
819 902 7.544217 GCCTACAAAAGTTTAAACACATATGGG 59.456 37.037 20.06 2.57 0.00 4.00
820 903 8.032451 CCTACAAAAGTTTAAACACATATGGGG 58.968 37.037 20.06 12.47 0.00 4.96
852 938 8.194104 ACACTACAGATTGAGATCACATTAGAC 58.806 37.037 0.00 0.00 34.60 2.59
853 939 8.412456 CACTACAGATTGAGATCACATTAGACT 58.588 37.037 0.00 0.00 34.60 3.24
854 940 8.412456 ACTACAGATTGAGATCACATTAGACTG 58.588 37.037 0.00 0.00 34.60 3.51
856 942 5.466058 CAGATTGAGATCACATTAGACTGGC 59.534 44.000 0.00 0.00 34.60 4.85
857 943 3.443099 TGAGATCACATTAGACTGGCG 57.557 47.619 0.00 0.00 0.00 5.69
858 944 3.023832 TGAGATCACATTAGACTGGCGA 58.976 45.455 0.00 0.00 0.00 5.54
859 945 3.638627 TGAGATCACATTAGACTGGCGAT 59.361 43.478 0.00 0.00 0.00 4.58
860 946 4.233789 GAGATCACATTAGACTGGCGATC 58.766 47.826 0.00 0.00 33.08 3.69
861 947 2.890808 TCACATTAGACTGGCGATCC 57.109 50.000 0.00 0.00 0.00 3.36
862 948 1.412710 TCACATTAGACTGGCGATCCC 59.587 52.381 0.00 0.00 0.00 3.85
863 949 0.759346 ACATTAGACTGGCGATCCCC 59.241 55.000 0.00 0.00 0.00 4.81
864 950 0.758734 CATTAGACTGGCGATCCCCA 59.241 55.000 0.00 0.00 0.00 4.96
865 951 1.140852 CATTAGACTGGCGATCCCCAA 59.859 52.381 0.00 0.00 33.73 4.12
866 952 1.507140 TTAGACTGGCGATCCCCAAT 58.493 50.000 0.00 0.00 33.73 3.16
867 953 1.048601 TAGACTGGCGATCCCCAATC 58.951 55.000 0.00 0.00 33.73 2.67
879 965 0.394352 CCCCAATCTGGTCCGGAAAG 60.394 60.000 5.23 7.50 35.17 2.62
914 1000 1.096386 CCCGACTCGGTCTGGACTAG 61.096 65.000 16.35 0.00 46.80 2.57
924 1010 0.035152 TCTGGACTAGGGTTCGCGTA 60.035 55.000 5.77 0.00 0.00 4.42
931 1017 2.428171 ACTAGGGTTCGCGTATTGCTTA 59.572 45.455 5.77 0.00 43.27 3.09
932 1018 1.648504 AGGGTTCGCGTATTGCTTAC 58.351 50.000 5.77 0.00 43.27 2.34
934 1020 2.428171 AGGGTTCGCGTATTGCTTACTA 59.572 45.455 5.77 0.00 43.27 1.82
935 1021 2.537214 GGGTTCGCGTATTGCTTACTAC 59.463 50.000 5.77 0.00 43.27 2.73
936 1022 3.442100 GGTTCGCGTATTGCTTACTACT 58.558 45.455 5.77 0.00 43.27 2.57
937 1023 3.485013 GGTTCGCGTATTGCTTACTACTC 59.515 47.826 5.77 0.00 43.27 2.59
938 1024 3.344904 TCGCGTATTGCTTACTACTCC 57.655 47.619 5.77 0.00 43.27 3.85
941 1027 3.242969 CGCGTATTGCTTACTACTCCTCA 60.243 47.826 0.00 0.00 43.27 3.86
943 1029 5.290386 GCGTATTGCTTACTACTCCTCAAT 58.710 41.667 0.00 0.00 41.73 2.57
944 1030 5.402867 GCGTATTGCTTACTACTCCTCAATC 59.597 44.000 0.00 0.00 41.73 2.67
945 1031 5.921408 CGTATTGCTTACTACTCCTCAATCC 59.079 44.000 0.00 0.00 0.00 3.01
947 1033 3.039011 TGCTTACTACTCCTCAATCCCC 58.961 50.000 0.00 0.00 0.00 4.81
948 1034 2.036089 GCTTACTACTCCTCAATCCCCG 59.964 54.545 0.00 0.00 0.00 5.73
949 1035 3.563223 CTTACTACTCCTCAATCCCCGA 58.437 50.000 0.00 0.00 0.00 5.14
950 1036 2.777459 ACTACTCCTCAATCCCCGAT 57.223 50.000 0.00 0.00 0.00 4.18
952 1038 1.896465 CTACTCCTCAATCCCCGATCC 59.104 57.143 0.00 0.00 0.00 3.36
953 1039 0.764752 ACTCCTCAATCCCCGATCCC 60.765 60.000 0.00 0.00 0.00 3.85
956 1042 1.352622 CCTCAATCCCCGATCCCCAA 61.353 60.000 0.00 0.00 0.00 4.12
957 1043 0.773644 CTCAATCCCCGATCCCCAAT 59.226 55.000 0.00 0.00 0.00 3.16
999 1109 1.595382 GAATCAGGCGATCCCACCG 60.595 63.158 3.45 0.00 35.39 4.94
1090 1212 2.224670 ACCACCACCGAACAACATATGT 60.225 45.455 1.41 1.41 46.82 2.29
1146 1268 3.069980 GCCGTGCACCACCACAAAA 62.070 57.895 12.15 0.00 35.47 2.44
1156 1278 4.864247 GCACCACCACAAAACATCATATTC 59.136 41.667 0.00 0.00 0.00 1.75
1414 1554 3.479269 CCGAGTCGAAGGCGTTGC 61.479 66.667 15.64 0.00 36.95 4.17
1662 1802 2.368875 TCAGGTCAAGAACAGGAAGGAC 59.631 50.000 0.00 0.00 0.00 3.85
1680 1820 1.446272 CGGAGACAAAGTCGGGCTC 60.446 63.158 0.00 0.00 37.67 4.70
1803 1943 6.533730 TGATGATTGTCCCTATGAACCATAC 58.466 40.000 0.00 0.00 0.00 2.39
1836 1976 2.177594 CTGGAGGTGTGGTCCTGCTC 62.178 65.000 5.90 0.00 44.51 4.26
1882 2022 8.709646 CAAGTATTCTACACAAAGTGGTAGAAC 58.290 37.037 14.35 6.12 38.08 3.01
1898 2038 4.762251 GGTAGAACTGCATCCAAGAAGTTT 59.238 41.667 0.00 0.00 33.14 2.66
1958 2149 4.756642 TGCATCCAAGAAGTTTGTAGACTG 59.243 41.667 0.00 0.00 0.00 3.51
1977 2168 6.226787 AGACTGTCTGATCAGTTTAAGTTGG 58.773 40.000 21.92 6.43 46.81 3.77
1978 2169 5.308825 ACTGTCTGATCAGTTTAAGTTGGG 58.691 41.667 21.92 5.19 44.92 4.12
1979 2170 4.651778 TGTCTGATCAGTTTAAGTTGGGG 58.348 43.478 21.92 0.00 0.00 4.96
1980 2171 4.010349 GTCTGATCAGTTTAAGTTGGGGG 58.990 47.826 21.92 0.00 0.00 5.40
1981 2172 3.913799 TCTGATCAGTTTAAGTTGGGGGA 59.086 43.478 21.92 0.00 0.00 4.81
1983 2174 3.655777 TGATCAGTTTAAGTTGGGGGACT 59.344 43.478 0.00 0.00 0.00 3.85
1984 2175 4.847512 TGATCAGTTTAAGTTGGGGGACTA 59.152 41.667 0.00 0.00 0.00 2.59
1985 2176 5.491078 TGATCAGTTTAAGTTGGGGGACTAT 59.509 40.000 0.00 0.00 0.00 2.12
1986 2177 6.674861 TGATCAGTTTAAGTTGGGGGACTATA 59.325 38.462 0.00 0.00 0.00 1.31
1987 2178 6.303903 TCAGTTTAAGTTGGGGGACTATAC 57.696 41.667 0.00 0.00 0.00 1.47
1988 2179 5.786457 TCAGTTTAAGTTGGGGGACTATACA 59.214 40.000 0.00 0.00 0.00 2.29
1989 2180 6.445786 TCAGTTTAAGTTGGGGGACTATACAT 59.554 38.462 0.00 0.00 0.00 2.29
1990 2181 7.624478 TCAGTTTAAGTTGGGGGACTATACATA 59.376 37.037 0.00 0.00 0.00 2.29
1991 2182 8.437575 CAGTTTAAGTTGGGGGACTATACATAT 58.562 37.037 0.00 0.00 0.00 1.78
1992 2183 9.678981 AGTTTAAGTTGGGGGACTATACATATA 57.321 33.333 0.00 0.00 0.00 0.86
1998 2189 9.448587 AGTTGGGGGACTATACATATATAATCC 57.551 37.037 0.00 0.00 38.46 3.01
1999 2190 9.220906 GTTGGGGGACTATACATATATAATCCA 57.779 37.037 1.25 0.00 40.18 3.41
2000 2191 9.806702 TTGGGGGACTATACATATATAATCCAA 57.193 33.333 1.25 0.00 40.18 3.53
2001 2192 9.447279 TGGGGGACTATACATATATAATCCAAG 57.553 37.037 1.25 0.00 40.18 3.61
2002 2193 9.448587 GGGGGACTATACATATATAATCCAAGT 57.551 37.037 1.25 0.00 40.18 3.16
2019 2210 3.251571 CAAGTTTCCGGTACTCTAGCAC 58.748 50.000 11.45 0.00 0.00 4.40
2023 2214 0.034380 TCCGGTACTCTAGCACTGCT 60.034 55.000 8.95 8.95 43.41 4.24
2028 2219 3.280295 GGTACTCTAGCACTGCTCTGTA 58.720 50.000 6.86 6.69 40.44 2.74
2031 2222 5.708230 GGTACTCTAGCACTGCTCTGTATAT 59.292 44.000 6.86 0.00 40.44 0.86
2115 2306 4.508551 TCATCAAGGTGGCATATCAGTT 57.491 40.909 0.00 0.00 0.00 3.16
2118 2309 3.877559 TCAAGGTGGCATATCAGTTCAG 58.122 45.455 0.00 0.00 0.00 3.02
2142 2333 5.776173 GCTTATGTAGCCTAACTCTCAGA 57.224 43.478 0.00 0.00 44.48 3.27
2143 2334 6.150396 GCTTATGTAGCCTAACTCTCAGAA 57.850 41.667 0.00 0.00 44.48 3.02
2144 2335 6.754193 GCTTATGTAGCCTAACTCTCAGAAT 58.246 40.000 0.00 0.00 44.48 2.40
2145 2336 6.866248 GCTTATGTAGCCTAACTCTCAGAATC 59.134 42.308 0.00 0.00 44.48 2.52
2146 2337 4.902443 TGTAGCCTAACTCTCAGAATCG 57.098 45.455 0.00 0.00 0.00 3.34
2147 2338 4.524053 TGTAGCCTAACTCTCAGAATCGA 58.476 43.478 0.00 0.00 0.00 3.59
2148 2339 4.335874 TGTAGCCTAACTCTCAGAATCGAC 59.664 45.833 0.00 0.00 0.00 4.20
2163 2354 6.483307 TCAGAATCGACAGAACAAAGTTTGAT 59.517 34.615 22.23 10.54 0.00 2.57
2223 2415 7.979444 TCCTCTTTCCTAAATATAATTGCCG 57.021 36.000 0.00 0.00 0.00 5.69
2225 2417 6.206634 CCTCTTTCCTAAATATAATTGCCGCA 59.793 38.462 0.00 0.00 0.00 5.69
2254 2446 3.010138 TGATTTTTCCTACAGTCTGGGGG 59.990 47.826 4.53 5.95 0.00 5.40
2292 2484 3.689414 CAGCATTGCAGCCCTTCA 58.311 55.556 11.91 0.00 34.23 3.02
2293 2485 1.969085 CAGCATTGCAGCCCTTCAA 59.031 52.632 11.91 0.00 34.23 2.69
2295 2487 1.066430 CAGCATTGCAGCCCTTCAAAT 60.066 47.619 11.91 0.00 34.23 2.32
2298 2490 2.094078 GCATTGCAGCCCTTCAAATGTA 60.094 45.455 3.15 0.00 0.00 2.29
2308 2503 4.831107 CCCTTCAAATGTACCCCAAATTG 58.169 43.478 0.00 0.00 0.00 2.32
2315 2510 7.385267 TCAAATGTACCCCAAATTGAATCTTG 58.615 34.615 0.00 0.00 32.93 3.02
2330 2532 2.107950 TCTTGTTACCGATGCCCTTG 57.892 50.000 0.00 0.00 0.00 3.61
2347 2549 3.307059 CCCTTGAACCTGTACTTCCTCAG 60.307 52.174 0.00 0.00 0.00 3.35
2361 2563 2.833794 TCCTCAGAACACGGTGAAAAG 58.166 47.619 16.29 4.72 0.00 2.27
2363 2565 2.802816 CCTCAGAACACGGTGAAAAGAG 59.197 50.000 16.29 14.80 0.00 2.85
2368 2570 1.961277 CACGGTGAAAAGAGGCGCT 60.961 57.895 7.64 0.00 0.00 5.92
2399 2601 4.818546 CCCCAGTCAGCTTATTACTTCATG 59.181 45.833 0.00 0.00 0.00 3.07
2400 2602 4.818546 CCCAGTCAGCTTATTACTTCATGG 59.181 45.833 0.00 0.00 0.00 3.66
2403 2605 6.375455 CCAGTCAGCTTATTACTTCATGGTTT 59.625 38.462 0.00 0.00 0.00 3.27
2404 2606 7.094205 CCAGTCAGCTTATTACTTCATGGTTTT 60.094 37.037 0.00 0.00 0.00 2.43
2405 2607 8.299570 CAGTCAGCTTATTACTTCATGGTTTTT 58.700 33.333 0.00 0.00 0.00 1.94
2406 2608 8.515414 AGTCAGCTTATTACTTCATGGTTTTTC 58.485 33.333 0.00 0.00 0.00 2.29
2407 2609 8.515414 GTCAGCTTATTACTTCATGGTTTTTCT 58.485 33.333 0.00 0.00 0.00 2.52
2408 2610 9.077885 TCAGCTTATTACTTCATGGTTTTTCTT 57.922 29.630 0.00 0.00 0.00 2.52
2409 2611 9.696917 CAGCTTATTACTTCATGGTTTTTCTTT 57.303 29.630 0.00 0.00 0.00 2.52
2410 2612 9.696917 AGCTTATTACTTCATGGTTTTTCTTTG 57.303 29.630 0.00 0.00 0.00 2.77
2411 2613 9.691362 GCTTATTACTTCATGGTTTTTCTTTGA 57.309 29.630 0.00 0.00 0.00 2.69
2467 2671 6.723977 ACTATTAGCCCCAAACTGAAATTTGA 59.276 34.615 0.00 0.00 41.28 2.69
2468 2672 3.751479 AGCCCCAAACTGAAATTTGAC 57.249 42.857 0.00 0.00 41.28 3.18
2469 2673 2.035832 AGCCCCAAACTGAAATTTGACG 59.964 45.455 0.00 0.00 41.28 4.35
2474 2712 4.347813 CCAAACTGAAATTTGACGTCGTT 58.652 39.130 11.62 3.25 41.28 3.85
2493 2731 4.779475 CGGCTAGCAACCCATAGG 57.221 61.111 18.24 0.00 40.04 2.57
2494 2732 1.598130 CGGCTAGCAACCCATAGGC 60.598 63.158 18.24 0.00 40.25 3.93
2495 2733 1.598130 GGCTAGCAACCCATAGGCG 60.598 63.158 18.24 0.00 35.24 5.52
2496 2734 2.254464 GCTAGCAACCCATAGGCGC 61.254 63.158 10.63 0.00 36.11 6.53
2497 2735 1.447643 CTAGCAACCCATAGGCGCT 59.552 57.895 7.64 0.55 45.00 5.92
2498 2736 0.882042 CTAGCAACCCATAGGCGCTG 60.882 60.000 7.64 0.00 43.33 5.18
2499 2737 2.324014 TAGCAACCCATAGGCGCTGG 62.324 60.000 7.64 7.37 43.33 4.85
2500 2738 3.211963 CAACCCATAGGCGCTGGC 61.212 66.667 7.64 0.00 36.11 4.85
2525 2763 1.340248 GGGCAGCAGCGATTAGTAGTA 59.660 52.381 0.00 0.00 43.41 1.82
2526 2764 2.608261 GGGCAGCAGCGATTAGTAGTAG 60.608 54.545 0.00 0.00 43.41 2.57
2527 2765 2.034812 GGCAGCAGCGATTAGTAGTAGT 59.965 50.000 0.00 0.00 43.41 2.73
2528 2766 3.491104 GGCAGCAGCGATTAGTAGTAGTT 60.491 47.826 0.00 0.00 43.41 2.24
2529 2767 4.113354 GCAGCAGCGATTAGTAGTAGTTT 58.887 43.478 0.00 0.00 0.00 2.66
2530 2768 4.026475 GCAGCAGCGATTAGTAGTAGTTTG 60.026 45.833 0.00 0.00 0.00 2.93
2531 2769 4.504461 CAGCAGCGATTAGTAGTAGTTTGG 59.496 45.833 0.00 0.00 0.00 3.28
2532 2770 4.159879 AGCAGCGATTAGTAGTAGTTTGGT 59.840 41.667 0.00 0.00 0.00 3.67
2544 2782 2.262423 AGTTTGGTTGAGACAGGAGC 57.738 50.000 0.00 0.00 0.00 4.70
2590 2829 5.189180 ACTTATCTTTGAGGCCACAAGATC 58.811 41.667 21.26 4.19 0.00 2.75
2600 2839 2.159517 GGCCACAAGATCACAATCGAAC 60.160 50.000 0.00 0.00 36.97 3.95
2611 2850 4.900684 TCACAATCGAACCCTTCATGTTA 58.099 39.130 0.00 0.00 0.00 2.41
2622 2861 3.119708 CCCTTCATGTTACTGCTGCTTTC 60.120 47.826 0.00 0.00 0.00 2.62
2623 2862 3.503363 CCTTCATGTTACTGCTGCTTTCA 59.497 43.478 0.00 0.00 0.00 2.69
2639 2879 1.420430 TTCAGGTCGTCCTCAACCTT 58.580 50.000 0.00 0.00 43.45 3.50
2658 2898 0.620556 TGAGGAAGAGCCCCATGTTC 59.379 55.000 0.00 0.00 37.37 3.18
2660 2900 0.915364 AGGAAGAGCCCCATGTTCTC 59.085 55.000 0.00 0.00 32.74 2.87
2664 2907 0.842030 AGAGCCCCATGTTCTCACCA 60.842 55.000 8.26 0.00 26.27 4.17
2680 2923 1.194781 ACCAATGCCGAGACCTCACT 61.195 55.000 0.00 0.00 0.00 3.41
2687 2930 1.546476 GCCGAGACCTCACTATATGGG 59.454 57.143 0.00 0.00 0.00 4.00
2701 2944 3.525800 ATATGGGGCATCTTTGGGTAC 57.474 47.619 0.00 0.00 0.00 3.34
2702 2945 1.308877 ATGGGGCATCTTTGGGTACT 58.691 50.000 0.00 0.00 0.00 2.73
2709 2952 2.673368 GCATCTTTGGGTACTCAGTTCG 59.327 50.000 0.00 0.00 0.00 3.95
2760 3003 9.909644 GCTAGACCGTTTATAGAATCAGAAATA 57.090 33.333 0.00 0.00 0.00 1.40
2765 3008 7.171678 ACCGTTTATAGAATCAGAAATAGCTGC 59.828 37.037 0.00 0.00 35.86 5.25
2801 3044 4.235939 CTGGAATCCAGTATGACGAGAG 57.764 50.000 20.76 0.00 45.82 3.20
2802 3045 2.959030 TGGAATCCAGTATGACGAGAGG 59.041 50.000 0.00 0.00 39.69 3.69
2803 3046 2.959707 GGAATCCAGTATGACGAGAGGT 59.040 50.000 0.00 0.00 39.69 3.85
2812 3055 1.080705 GACGAGAGGTGTTCACGGG 60.081 63.158 0.00 0.00 43.07 5.28
2820 3063 1.515521 GGTGTTCACGGGAAGCAAGG 61.516 60.000 0.00 0.00 32.62 3.61
2823 3066 1.029681 GTTCACGGGAAGCAAGGTTT 58.970 50.000 0.00 0.00 32.62 3.27
2824 3067 1.407618 GTTCACGGGAAGCAAGGTTTT 59.592 47.619 0.00 0.00 32.62 2.43
2825 3068 1.028905 TCACGGGAAGCAAGGTTTTG 58.971 50.000 0.00 0.00 37.36 2.44
2826 3069 0.744281 CACGGGAAGCAAGGTTTTGT 59.256 50.000 0.00 0.00 36.65 2.83
2827 3070 1.950909 CACGGGAAGCAAGGTTTTGTA 59.049 47.619 0.00 0.00 36.65 2.41
2828 3071 2.359531 CACGGGAAGCAAGGTTTTGTAA 59.640 45.455 0.00 0.00 36.65 2.41
2829 3072 3.025262 ACGGGAAGCAAGGTTTTGTAAA 58.975 40.909 0.00 0.00 36.65 2.01
2830 3073 3.447944 ACGGGAAGCAAGGTTTTGTAAAA 59.552 39.130 0.00 0.00 36.65 1.52
2831 3074 4.081586 ACGGGAAGCAAGGTTTTGTAAAAA 60.082 37.500 0.00 0.00 36.65 1.94
2832 3075 5.053811 CGGGAAGCAAGGTTTTGTAAAAAT 58.946 37.500 0.00 0.00 36.65 1.82
2833 3076 5.050431 CGGGAAGCAAGGTTTTGTAAAAATG 60.050 40.000 0.00 0.00 36.65 2.32
2834 3077 6.052360 GGGAAGCAAGGTTTTGTAAAAATGA 58.948 36.000 0.00 0.00 36.65 2.57
2835 3078 6.018262 GGGAAGCAAGGTTTTGTAAAAATGAC 60.018 38.462 0.00 0.00 36.65 3.06
2836 3079 6.761242 GGAAGCAAGGTTTTGTAAAAATGACT 59.239 34.615 0.00 0.00 36.65 3.41
2837 3080 7.923878 GGAAGCAAGGTTTTGTAAAAATGACTA 59.076 33.333 0.00 0.00 36.65 2.59
2838 3081 9.476202 GAAGCAAGGTTTTGTAAAAATGACTAT 57.524 29.630 0.00 0.00 36.65 2.12
2839 3082 9.830975 AAGCAAGGTTTTGTAAAAATGACTATT 57.169 25.926 0.00 0.00 36.65 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.515797 AACTCTCAATATCGATCGTTGGA 57.484 39.130 15.94 10.43 0.00 3.53
95 96 2.542824 GCTCTCTTCTATGGACAGACGC 60.543 54.545 0.00 0.00 0.00 5.19
98 99 2.023984 TGGGCTCTCTTCTATGGACAGA 60.024 50.000 0.00 0.00 0.00 3.41
107 108 1.554617 GAAGCTCTTGGGCTCTCTTCT 59.445 52.381 0.00 0.00 42.24 2.85
116 117 2.271800 GACATGTACGAAGCTCTTGGG 58.728 52.381 0.00 0.00 0.00 4.12
122 123 2.418746 GGGTGATGACATGTACGAAGCT 60.419 50.000 0.00 0.00 0.00 3.74
133 134 3.307691 GGTCAGAGAATTGGGTGATGACA 60.308 47.826 0.00 0.00 37.82 3.58
152 153 2.272471 GCACTAGGGCCAAGGGTC 59.728 66.667 5.37 0.00 0.00 4.46
219 220 2.436417 AGACCGAAATGGGATGTGTTG 58.564 47.619 0.00 0.00 44.64 3.33
261 262 7.062749 TCTCTAGTAATGTTTGTGAGGTTGT 57.937 36.000 0.00 0.00 0.00 3.32
291 292 5.039333 GGCATAGCTTTCATTGTGAATGTC 58.961 41.667 0.00 0.00 36.11 3.06
337 338 1.732941 TTGTTGCAGTCTCGTGTTGT 58.267 45.000 0.00 0.00 0.00 3.32
347 348 3.492102 ACACTAGGTGATTGTTGCAGT 57.508 42.857 4.62 0.00 36.96 4.40
353 354 6.109156 TCACATACAACACTAGGTGATTGT 57.891 37.500 16.22 16.22 39.28 2.71
424 507 0.392193 AGCCATGGCAGACTTTCTCG 60.392 55.000 37.18 0.00 44.88 4.04
427 510 2.187073 CCAGCCATGGCAGACTTTC 58.813 57.895 37.18 6.56 44.88 2.62
711 794 2.967201 AGCTGATCTTCTCCTGATCCAG 59.033 50.000 0.00 0.00 39.48 3.86
746 829 1.089920 CGGTGATGGGCAAGAGAAAG 58.910 55.000 0.00 0.00 0.00 2.62
774 857 0.804989 CAGCATTTGAGGACGGGAAC 59.195 55.000 0.00 0.00 0.00 3.62
789 872 5.105716 TGTGTTTAAACTTTTGTAGGCAGCA 60.106 36.000 18.72 0.00 0.00 4.41
802 885 6.882678 GTGACTACCCCATATGTGTTTAAACT 59.117 38.462 18.72 2.07 0.00 2.66
803 886 6.655848 TGTGACTACCCCATATGTGTTTAAAC 59.344 38.462 11.54 11.54 0.00 2.01
832 918 5.466058 GCCAGTCTAATGTGATCTCAATCTG 59.534 44.000 0.90 6.38 32.75 2.90
852 938 1.228063 CCAGATTGGGGATCGCCAG 60.228 63.158 28.18 17.93 39.85 4.85
853 939 1.983119 GACCAGATTGGGGATCGCCA 61.983 60.000 26.54 26.54 43.37 5.69
854 940 1.227973 GACCAGATTGGGGATCGCC 60.228 63.158 21.55 21.55 43.37 5.54
856 942 1.069765 CGGACCAGATTGGGGATCG 59.930 63.158 0.00 0.00 43.37 3.69
857 943 1.054406 TCCGGACCAGATTGGGGATC 61.054 60.000 0.00 0.00 43.37 3.36
858 944 0.623324 TTCCGGACCAGATTGGGGAT 60.623 55.000 1.83 0.00 43.37 3.85
859 945 0.842905 TTTCCGGACCAGATTGGGGA 60.843 55.000 1.83 0.00 43.37 4.81
860 946 0.394352 CTTTCCGGACCAGATTGGGG 60.394 60.000 1.83 0.00 43.37 4.96
861 947 0.394352 CCTTTCCGGACCAGATTGGG 60.394 60.000 1.83 0.00 43.37 4.12
862 948 0.618458 TCCTTTCCGGACCAGATTGG 59.382 55.000 1.83 0.00 45.02 3.16
879 965 1.395826 CGGGATCTCCAGTCCAGTCC 61.396 65.000 0.00 0.00 37.49 3.85
882 968 0.396417 AGTCGGGATCTCCAGTCCAG 60.396 60.000 0.00 0.00 37.49 3.86
924 1010 4.103311 GGGGATTGAGGAGTAGTAAGCAAT 59.897 45.833 0.00 0.00 0.00 3.56
931 1017 2.599677 GATCGGGGATTGAGGAGTAGT 58.400 52.381 0.00 0.00 0.00 2.73
932 1018 1.896465 GGATCGGGGATTGAGGAGTAG 59.104 57.143 0.00 0.00 0.00 2.57
934 1020 0.764752 GGGATCGGGGATTGAGGAGT 60.765 60.000 0.00 0.00 0.00 3.85
935 1021 1.484444 GGGGATCGGGGATTGAGGAG 61.484 65.000 0.00 0.00 0.00 3.69
936 1022 1.461461 GGGGATCGGGGATTGAGGA 60.461 63.158 0.00 0.00 0.00 3.71
937 1023 1.352622 TTGGGGATCGGGGATTGAGG 61.353 60.000 0.00 0.00 0.00 3.86
938 1024 0.773644 ATTGGGGATCGGGGATTGAG 59.226 55.000 0.00 0.00 0.00 3.02
941 1027 1.435346 GGGATTGGGGATCGGGGATT 61.435 60.000 0.00 0.00 35.49 3.01
943 1029 2.449714 GGGATTGGGGATCGGGGA 60.450 66.667 0.00 0.00 35.49 4.81
944 1030 3.580319 GGGGATTGGGGATCGGGG 61.580 72.222 0.00 0.00 35.49 5.73
945 1031 2.776526 TGGGGATTGGGGATCGGG 60.777 66.667 0.00 0.00 35.49 5.14
947 1033 0.185901 ATTGTGGGGATTGGGGATCG 59.814 55.000 0.00 0.00 35.49 3.69
948 1034 1.819305 CGATTGTGGGGATTGGGGATC 60.819 57.143 0.00 0.00 0.00 3.36
949 1035 0.185901 CGATTGTGGGGATTGGGGAT 59.814 55.000 0.00 0.00 0.00 3.85
950 1036 1.211567 ACGATTGTGGGGATTGGGGA 61.212 55.000 0.00 0.00 0.00 4.81
952 1038 1.102978 GAACGATTGTGGGGATTGGG 58.897 55.000 0.00 0.00 0.00 4.12
953 1039 0.732571 CGAACGATTGTGGGGATTGG 59.267 55.000 0.00 0.00 0.00 3.16
956 1042 1.451387 GCCGAACGATTGTGGGGAT 60.451 57.895 6.83 0.00 0.00 3.85
957 1043 2.046700 GCCGAACGATTGTGGGGA 60.047 61.111 6.83 0.00 0.00 4.81
999 1109 2.495084 GAACCCTTCTTATCGGCCATC 58.505 52.381 2.24 0.00 0.00 3.51
1078 1200 0.027586 GCCGCCGACATATGTTGTTC 59.972 55.000 19.62 11.12 39.18 3.18
1138 1260 5.185635 CCACCAGAATATGATGTTTTGTGGT 59.814 40.000 0.00 0.00 44.97 4.16
1140 1262 6.405065 CCTCCACCAGAATATGATGTTTTGTG 60.405 42.308 0.00 0.00 0.00 3.33
1142 1264 5.887598 TCCTCCACCAGAATATGATGTTTTG 59.112 40.000 0.00 0.00 0.00 2.44
1146 1268 3.070159 CGTCCTCCACCAGAATATGATGT 59.930 47.826 0.00 0.00 0.00 3.06
1252 1386 3.039202 GCGCCGGGAACATGTTCAG 62.039 63.158 33.42 26.27 41.20 3.02
1327 1461 0.182061 TCTACTAGGTCGACCGCCAT 59.818 55.000 28.26 17.31 42.08 4.40
1598 1738 3.144068 TCCTTTCATGGATCCACCCTA 57.856 47.619 18.99 2.30 38.00 3.53
1662 1802 1.446272 GAGCCCGACTTTGTCTCCG 60.446 63.158 0.00 0.00 0.00 4.63
1803 1943 1.406069 CCTCCAGGGTTGTTCTCATCG 60.406 57.143 0.00 0.00 0.00 3.84
1836 1976 5.357314 ACTTGGATTGCTTCAATCTCAGATG 59.643 40.000 16.24 10.26 46.47 2.90
1866 2006 3.275617 TGCAGTTCTACCACTTTGTGT 57.724 42.857 0.00 0.00 0.00 3.72
1882 2022 4.202040 TGTTGACAAACTTCTTGGATGCAG 60.202 41.667 0.00 0.00 37.19 4.41
1898 2038 6.764379 TGTGTAGAATACTTGGATGTTGACA 58.236 36.000 0.00 0.00 43.54 3.58
1958 2149 4.010349 CCCCCAACTTAAACTGATCAGAC 58.990 47.826 29.27 0.00 0.00 3.51
1986 2177 8.877195 AGTACCGGAAACTTGGATTATATATGT 58.123 33.333 9.46 0.00 0.00 2.29
1987 2178 9.367444 GAGTACCGGAAACTTGGATTATATATG 57.633 37.037 9.46 0.00 0.00 1.78
1988 2179 9.322769 AGAGTACCGGAAACTTGGATTATATAT 57.677 33.333 9.46 0.00 0.00 0.86
1989 2180 8.716674 AGAGTACCGGAAACTTGGATTATATA 57.283 34.615 9.46 0.00 0.00 0.86
1990 2181 7.613551 AGAGTACCGGAAACTTGGATTATAT 57.386 36.000 9.46 0.00 0.00 0.86
1991 2182 7.255730 GCTAGAGTACCGGAAACTTGGATTATA 60.256 40.741 9.46 0.00 0.00 0.98
1992 2183 5.952347 AGAGTACCGGAAACTTGGATTAT 57.048 39.130 9.46 0.00 0.00 1.28
1993 2184 5.163478 GCTAGAGTACCGGAAACTTGGATTA 60.163 44.000 9.46 0.72 0.00 1.75
1994 2185 4.382793 GCTAGAGTACCGGAAACTTGGATT 60.383 45.833 9.46 0.00 0.00 3.01
1995 2186 3.132467 GCTAGAGTACCGGAAACTTGGAT 59.868 47.826 9.46 2.18 0.00 3.41
1996 2187 2.494870 GCTAGAGTACCGGAAACTTGGA 59.505 50.000 9.46 0.16 0.00 3.53
1997 2188 2.232941 TGCTAGAGTACCGGAAACTTGG 59.767 50.000 9.46 6.78 0.00 3.61
1998 2189 3.056749 AGTGCTAGAGTACCGGAAACTTG 60.057 47.826 9.46 7.12 0.00 3.16
1999 2190 3.056749 CAGTGCTAGAGTACCGGAAACTT 60.057 47.826 9.46 5.22 0.00 2.66
2000 2191 2.492484 CAGTGCTAGAGTACCGGAAACT 59.508 50.000 9.46 11.71 0.00 2.66
2001 2192 2.877335 CAGTGCTAGAGTACCGGAAAC 58.123 52.381 9.46 5.94 0.00 2.78
2002 2193 1.203994 GCAGTGCTAGAGTACCGGAAA 59.796 52.381 9.46 0.00 0.00 3.13
2003 2194 0.815734 GCAGTGCTAGAGTACCGGAA 59.184 55.000 9.46 0.00 0.00 4.30
2004 2195 0.034380 AGCAGTGCTAGAGTACCGGA 60.034 55.000 18.11 0.00 36.99 5.14
2005 2196 0.382515 GAGCAGTGCTAGAGTACCGG 59.617 60.000 19.77 0.00 39.88 5.28
2006 2197 1.064803 CAGAGCAGTGCTAGAGTACCG 59.935 57.143 19.77 0.00 39.88 4.02
2007 2198 2.096248 ACAGAGCAGTGCTAGAGTACC 58.904 52.381 19.77 3.33 39.88 3.34
2008 2199 6.811253 ATATACAGAGCAGTGCTAGAGTAC 57.189 41.667 19.77 4.15 39.88 2.73
2098 2289 3.875727 CTCTGAACTGATATGCCACCTTG 59.124 47.826 0.00 0.00 0.00 3.61
2130 2321 5.106118 TGTTCTGTCGATTCTGAGAGTTAGG 60.106 44.000 0.00 0.00 31.56 2.69
2132 2323 5.959618 TGTTCTGTCGATTCTGAGAGTTA 57.040 39.130 0.00 0.00 31.56 2.24
2133 2324 4.855715 TGTTCTGTCGATTCTGAGAGTT 57.144 40.909 0.00 0.00 31.56 3.01
2135 2326 5.226396 ACTTTGTTCTGTCGATTCTGAGAG 58.774 41.667 0.00 0.00 0.00 3.20
2136 2327 5.201713 ACTTTGTTCTGTCGATTCTGAGA 57.798 39.130 0.00 0.00 0.00 3.27
2137 2328 5.914085 AACTTTGTTCTGTCGATTCTGAG 57.086 39.130 0.00 0.00 0.00 3.35
2138 2329 5.815222 TCAAACTTTGTTCTGTCGATTCTGA 59.185 36.000 1.44 0.00 0.00 3.27
2139 2330 6.048073 TCAAACTTTGTTCTGTCGATTCTG 57.952 37.500 1.44 0.00 0.00 3.02
2142 2333 6.618287 TGATCAAACTTTGTTCTGTCGATT 57.382 33.333 11.95 0.00 32.07 3.34
2143 2334 6.808008 ATGATCAAACTTTGTTCTGTCGAT 57.192 33.333 0.00 0.00 32.07 3.59
2144 2335 7.387673 ACATATGATCAAACTTTGTTCTGTCGA 59.612 33.333 10.38 0.00 32.07 4.20
2145 2336 7.521529 ACATATGATCAAACTTTGTTCTGTCG 58.478 34.615 10.38 3.99 32.07 4.35
2146 2337 9.683069 AAACATATGATCAAACTTTGTTCTGTC 57.317 29.630 10.38 2.39 32.07 3.51
2215 2407 0.605050 TCAGTGCTGTGCGGCAATTA 60.605 50.000 3.23 0.00 44.18 1.40
2223 2415 3.253188 TGTAGGAAAAATCAGTGCTGTGC 59.747 43.478 0.00 0.00 0.00 4.57
2225 2417 4.718961 ACTGTAGGAAAAATCAGTGCTGT 58.281 39.130 0.00 0.00 39.27 4.40
2254 2446 3.837578 CCAGCAGATGACATGGCC 58.162 61.111 0.00 0.00 0.00 5.36
2289 2481 7.552050 AGATTCAATTTGGGGTACATTTGAA 57.448 32.000 0.00 0.00 41.61 2.69
2290 2482 7.016072 ACAAGATTCAATTTGGGGTACATTTGA 59.984 33.333 0.00 0.00 32.79 2.69
2291 2483 7.160726 ACAAGATTCAATTTGGGGTACATTTG 58.839 34.615 0.00 0.00 0.00 2.32
2292 2484 7.315066 ACAAGATTCAATTTGGGGTACATTT 57.685 32.000 0.00 0.00 0.00 2.32
2293 2485 6.933514 ACAAGATTCAATTTGGGGTACATT 57.066 33.333 0.00 0.00 0.00 2.71
2295 2487 6.209788 GGTAACAAGATTCAATTTGGGGTACA 59.790 38.462 0.00 0.00 0.00 2.90
2298 2490 4.219725 CGGTAACAAGATTCAATTTGGGGT 59.780 41.667 0.00 0.00 0.00 4.95
2308 2503 2.919228 AGGGCATCGGTAACAAGATTC 58.081 47.619 0.00 0.00 0.00 2.52
2315 2510 1.092348 GGTTCAAGGGCATCGGTAAC 58.908 55.000 0.00 0.00 0.00 2.50
2330 2532 4.308265 GTGTTCTGAGGAAGTACAGGTTC 58.692 47.826 0.00 0.00 36.92 3.62
2347 2549 0.234884 CGCCTCTTTTCACCGTGTTC 59.765 55.000 0.00 0.00 0.00 3.18
2361 2563 1.449778 GGGGTCAAAGTAGCGCCTC 60.450 63.158 2.29 0.00 33.19 4.70
2363 2565 1.745489 CTGGGGTCAAAGTAGCGCC 60.745 63.158 2.29 0.00 36.01 6.53
2384 2586 9.696917 CAAAGAAAAACCATGAAGTAATAAGCT 57.303 29.630 0.00 0.00 0.00 3.74
2425 2627 8.961634 GGCTAATAGTTTTGGAATTTCTCTTCT 58.038 33.333 0.00 0.00 0.00 2.85
2426 2628 8.191446 GGGCTAATAGTTTTGGAATTTCTCTTC 58.809 37.037 0.00 0.00 0.00 2.87
2427 2629 7.124298 GGGGCTAATAGTTTTGGAATTTCTCTT 59.876 37.037 0.00 0.00 0.00 2.85
2428 2630 6.607600 GGGGCTAATAGTTTTGGAATTTCTCT 59.392 38.462 0.00 0.00 0.00 3.10
2429 2631 6.379988 TGGGGCTAATAGTTTTGGAATTTCTC 59.620 38.462 0.00 0.00 0.00 2.87
2438 2640 5.975693 TCAGTTTGGGGCTAATAGTTTTG 57.024 39.130 0.00 0.00 0.00 2.44
2501 2739 2.040213 CTAATCGCTGCTGCCCAACG 62.040 60.000 10.24 0.00 34.46 4.10
2502 2740 1.026718 ACTAATCGCTGCTGCCCAAC 61.027 55.000 10.24 0.00 35.36 3.77
2513 2751 6.253083 GTCTCAACCAAACTACTACTAATCGC 59.747 42.308 0.00 0.00 0.00 4.58
2525 2763 1.490490 TGCTCCTGTCTCAACCAAACT 59.510 47.619 0.00 0.00 0.00 2.66
2526 2764 1.967319 TGCTCCTGTCTCAACCAAAC 58.033 50.000 0.00 0.00 0.00 2.93
2527 2765 2.957402 ATGCTCCTGTCTCAACCAAA 57.043 45.000 0.00 0.00 0.00 3.28
2528 2766 2.957402 AATGCTCCTGTCTCAACCAA 57.043 45.000 0.00 0.00 0.00 3.67
2529 2767 4.365514 TTTAATGCTCCTGTCTCAACCA 57.634 40.909 0.00 0.00 0.00 3.67
2530 2768 4.034510 CGATTTAATGCTCCTGTCTCAACC 59.965 45.833 0.00 0.00 0.00 3.77
2531 2769 4.870426 TCGATTTAATGCTCCTGTCTCAAC 59.130 41.667 0.00 0.00 0.00 3.18
2532 2770 5.084818 TCGATTTAATGCTCCTGTCTCAA 57.915 39.130 0.00 0.00 0.00 3.02
2571 2809 3.245016 TGTGATCTTGTGGCCTCAAAGAT 60.245 43.478 20.06 20.58 0.00 2.40
2590 2829 4.695455 AGTAACATGAAGGGTTCGATTGTG 59.305 41.667 0.00 0.00 0.00 3.33
2600 2839 2.119801 AGCAGCAGTAACATGAAGGG 57.880 50.000 0.00 0.00 0.00 3.95
2611 2850 0.601311 GACGACCTGAAAGCAGCAGT 60.601 55.000 0.00 0.00 40.91 4.40
2658 2898 0.460987 GAGGTCTCGGCATTGGTGAG 60.461 60.000 0.00 0.00 0.00 3.51
2660 2900 1.021390 GTGAGGTCTCGGCATTGGTG 61.021 60.000 0.00 0.00 0.00 4.17
2664 2907 3.259374 CCATATAGTGAGGTCTCGGCATT 59.741 47.826 0.00 0.00 0.00 3.56
2680 2923 4.247814 AGTACCCAAAGATGCCCCATATA 58.752 43.478 0.00 0.00 0.00 0.86
2687 2930 2.789409 ACTGAGTACCCAAAGATGCC 57.211 50.000 0.00 0.00 0.00 4.40
2701 2944 1.871080 AGCCTCAAACACGAACTGAG 58.129 50.000 0.00 0.00 37.03 3.35
2702 2945 1.939934 CAAGCCTCAAACACGAACTGA 59.060 47.619 0.00 0.00 0.00 3.41
2709 2952 1.601412 GCAGAAGCAAGCCTCAAACAC 60.601 52.381 0.00 0.00 41.58 3.32
2765 3008 4.274459 GGATTCCAGCTATTACAACAGCAG 59.726 45.833 0.00 0.00 40.36 4.24
2800 3043 0.535102 CTTGCTTCCCGTGAACACCT 60.535 55.000 0.00 0.00 0.00 4.00
2801 3044 1.515521 CCTTGCTTCCCGTGAACACC 61.516 60.000 0.00 0.00 0.00 4.16
2802 3045 0.818040 ACCTTGCTTCCCGTGAACAC 60.818 55.000 0.00 0.00 0.00 3.32
2803 3046 0.106918 AACCTTGCTTCCCGTGAACA 60.107 50.000 0.00 0.00 0.00 3.18
2812 3055 7.770801 AGTCATTTTTACAAAACCTTGCTTC 57.229 32.000 0.00 0.00 35.84 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.