Multiple sequence alignment - TraesCS1B01G334500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G334500 chr1B 100.000 4714 0 0 1 4714 561646985 561642272 0.000000e+00 8706.0
1 TraesCS1B01G334500 chr1B 82.051 117 16 4 3613 3726 563225991 563226105 1.400000e-15 95.3
2 TraesCS1B01G334500 chr1D 92.575 3111 138 33 503 3576 415396804 415393750 0.000000e+00 4379.0
3 TraesCS1B01G334500 chr1D 93.003 1129 45 12 3606 4714 415393750 415392636 0.000000e+00 1616.0
4 TraesCS1B01G334500 chr1D 82.960 223 27 5 3055 3268 416544505 416544725 1.730000e-44 191.0
5 TraesCS1B01G334500 chr1A 93.579 2196 86 19 2055 4232 512869148 512866990 0.000000e+00 3223.0
6 TraesCS1B01G334500 chr1A 91.320 1394 79 22 494 1865 512870850 512869477 0.000000e+00 1866.0
7 TraesCS1B01G334500 chr1A 95.946 148 5 1 1909 2055 512869473 512869326 6.100000e-59 239.0
8 TraesCS1B01G334500 chr1A 82.960 223 27 5 3055 3268 513855943 513856163 1.730000e-44 191.0
9 TraesCS1B01G334500 chr1A 94.737 57 3 0 23 79 512871336 512871280 6.500000e-14 89.8
10 TraesCS1B01G334500 chr1A 97.297 37 1 0 1 37 512871627 512871591 3.940000e-06 63.9
11 TraesCS1B01G334500 chr7B 89.912 228 21 2 4414 4640 41291849 41291623 4.610000e-75 292.0
12 TraesCS1B01G334500 chr7B 84.685 111 7 8 235 342 69667066 69667169 8.350000e-18 102.0
13 TraesCS1B01G334500 chr7B 84.000 75 2 7 324 391 437846661 437846590 3.940000e-06 63.9
14 TraesCS1B01G334500 chr4D 88.333 240 28 0 4414 4653 146035551 146035790 5.970000e-74 289.0
15 TraesCS1B01G334500 chr3D 88.341 223 26 0 4414 4636 91705384 91705606 7.780000e-68 268.0
16 TraesCS1B01G334500 chr6A 87.387 222 28 0 4432 4653 227587873 227588094 6.050000e-64 255.0
17 TraesCS1B01G334500 chr7A 86.404 228 27 3 4415 4640 425771957 425771732 3.640000e-61 246.0
18 TraesCS1B01G334500 chr7A 84.681 235 34 2 4415 4648 667969120 667969353 2.840000e-57 233.0
19 TraesCS1B01G334500 chr7A 77.358 212 37 10 235 439 97602746 97602539 1.070000e-21 115.0
20 TraesCS1B01G334500 chr2B 84.167 240 38 0 4415 4654 701177751 701177990 2.840000e-57 233.0
21 TraesCS1B01G334500 chr3B 84.681 235 30 5 4416 4648 479793478 479793248 3.670000e-56 230.0
22 TraesCS1B01G334500 chr3B 80.000 155 21 10 234 384 801192362 801192510 6.450000e-19 106.0
23 TraesCS1B01G334500 chr3B 79.085 153 14 13 233 377 763607704 763607562 6.500000e-14 89.8
24 TraesCS1B01G334500 chr5A 82.533 229 21 6 235 445 44364473 44364246 2.900000e-42 183.0
25 TraesCS1B01G334500 chr5A 77.647 170 23 14 233 397 624753263 624753104 6.500000e-14 89.8
26 TraesCS1B01G334500 chr5B 81.875 160 19 10 233 386 33116356 33116201 4.950000e-25 126.0
27 TraesCS1B01G334500 chr5B 78.363 171 20 16 233 397 622051763 622051604 1.400000e-15 95.3
28 TraesCS1B01G334500 chr5D 82.099 162 14 14 230 384 361150379 361150532 1.780000e-24 124.0
29 TraesCS1B01G334500 chr4A 79.670 182 22 14 233 409 352509918 352509747 2.980000e-22 117.0
30 TraesCS1B01G334500 chr7D 84.956 113 15 2 230 342 264494981 264495091 3.860000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G334500 chr1B 561642272 561646985 4713 True 8706.00 8706 100.0000 1 4714 1 chr1B.!!$R1 4713
1 TraesCS1B01G334500 chr1D 415392636 415396804 4168 True 2997.50 4379 92.7890 503 4714 2 chr1D.!!$R1 4211
2 TraesCS1B01G334500 chr1A 512866990 512871627 4637 True 1096.34 3223 94.5758 1 4232 5 chr1A.!!$R1 4231

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 876 0.029300 AGTTCACACAACACGCATGC 59.971 50.000 7.91 7.91 0.00 4.06 F
335 894 0.246635 GCCAAAGGCGAGAGAGTACA 59.753 55.000 0.00 0.00 39.62 2.90 F
470 1029 0.252012 ACTGCAGGTCTAGTCAGGCT 60.252 55.000 19.93 0.00 0.00 4.58 F
474 1033 0.394488 CAGGTCTAGTCAGGCTCCGA 60.394 60.000 0.00 0.00 0.00 4.55 F
478 1037 0.468214 TCTAGTCAGGCTCCGATGGG 60.468 60.000 0.00 0.00 0.00 4.00 F
1539 2126 1.153429 GAAATCGACCCACCTCCCG 60.153 63.158 0.00 0.00 0.00 5.14 F
2486 3261 0.173708 CCTCCTGGCTACTCGTGTTC 59.826 60.000 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 2375 0.952280 CTAATCCATGCTGCTGCCTG 59.048 55.000 13.47 13.11 38.71 4.85 R
1979 2570 1.401552 GCAAAGAATATGAGCGCACCA 59.598 47.619 11.47 7.71 0.00 4.17 R
2450 3225 2.761767 GGAGGTAGTTCTTCTGAGACCC 59.238 54.545 0.00 0.00 0.00 4.46 R
2477 3252 1.300697 GGCAAGACCGAACACGAGT 60.301 57.895 0.00 0.00 0.00 4.18 R
2486 3261 5.235186 CAGATTTTCTAGTATGGCAAGACCG 59.765 44.000 0.00 0.00 43.94 4.79 R
2863 3639 0.468585 ATGTGCCATGCCCATGTAGG 60.469 55.000 7.42 0.00 37.11 3.18 R
3731 4516 0.169009 GCGGCAAAACTGATCCTGAC 59.831 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.045911 GGGGTCAAGGCAACACCAAA 61.046 55.000 1.56 0.00 40.14 3.28
37 38 3.312146 GGTCAAGGCAACACCAAATTTTG 59.688 43.478 1.99 1.99 43.14 2.44
70 340 9.099071 AGATAATAAGAGAAGACCATGCATACT 57.901 33.333 0.00 0.00 0.00 2.12
88 637 5.353678 GCATACTTCTATTGATGCCATCTCC 59.646 44.000 6.21 0.00 39.00 3.71
95 644 7.855784 TCTATTGATGCCATCTCCTAGTTTA 57.144 36.000 6.21 0.00 0.00 2.01
124 673 3.879892 GTCACATAGCCTTTGGATCTTCC 59.120 47.826 0.00 0.00 36.96 3.46
125 674 3.117888 TCACATAGCCTTTGGATCTTCCC 60.118 47.826 0.00 0.00 35.03 3.97
126 675 2.175715 ACATAGCCTTTGGATCTTCCCC 59.824 50.000 0.00 0.00 35.03 4.81
127 676 1.979809 TAGCCTTTGGATCTTCCCCA 58.020 50.000 0.00 0.00 35.03 4.96
135 684 4.982241 TTGGATCTTCCCCATCAGTATC 57.018 45.455 0.00 0.00 35.03 2.24
137 686 2.354203 GGATCTTCCCCATCAGTATCGC 60.354 54.545 0.00 0.00 0.00 4.58
141 690 1.300931 CCCCATCAGTATCGCCGTG 60.301 63.158 0.00 0.00 0.00 4.94
151 700 3.802139 CAGTATCGCCGTGTTGATATGTT 59.198 43.478 0.00 0.00 30.39 2.71
170 728 0.616679 TTACCTGCCTCCGCCTAACT 60.617 55.000 0.00 0.00 0.00 2.24
204 763 7.556275 TCAAGTGAACTAACAAGGAAAGTGAAT 59.444 33.333 0.00 0.00 0.00 2.57
205 764 7.264373 AGTGAACTAACAAGGAAAGTGAATG 57.736 36.000 0.00 0.00 0.00 2.67
207 766 6.912591 GTGAACTAACAAGGAAAGTGAATGTG 59.087 38.462 0.00 0.00 0.00 3.21
231 790 1.414181 CTGGTCTCTGCGTCCCAATAT 59.586 52.381 0.00 0.00 0.00 1.28
232 791 1.412710 TGGTCTCTGCGTCCCAATATC 59.587 52.381 0.00 0.00 0.00 1.63
233 792 1.603172 GGTCTCTGCGTCCCAATATCG 60.603 57.143 0.00 0.00 0.00 2.92
234 793 1.337071 GTCTCTGCGTCCCAATATCGA 59.663 52.381 0.00 0.00 0.00 3.59
235 794 2.028876 TCTCTGCGTCCCAATATCGAA 58.971 47.619 0.00 0.00 0.00 3.71
236 795 2.429250 TCTCTGCGTCCCAATATCGAAA 59.571 45.455 0.00 0.00 0.00 3.46
237 796 3.118920 TCTCTGCGTCCCAATATCGAAAA 60.119 43.478 0.00 0.00 0.00 2.29
238 797 3.804036 TCTGCGTCCCAATATCGAAAAT 58.196 40.909 0.00 0.00 0.00 1.82
239 798 3.559655 TCTGCGTCCCAATATCGAAAATG 59.440 43.478 0.00 0.00 0.00 2.32
240 799 2.616376 TGCGTCCCAATATCGAAAATGG 59.384 45.455 6.73 6.73 0.00 3.16
241 800 2.604614 GCGTCCCAATATCGAAAATGGC 60.605 50.000 7.91 0.00 0.00 4.40
242 801 2.878406 CGTCCCAATATCGAAAATGGCT 59.122 45.455 7.91 0.00 0.00 4.75
243 802 3.315191 CGTCCCAATATCGAAAATGGCTT 59.685 43.478 7.91 0.00 0.00 4.35
244 803 4.202010 CGTCCCAATATCGAAAATGGCTTT 60.202 41.667 7.91 0.00 0.00 3.51
245 804 5.281727 GTCCCAATATCGAAAATGGCTTTC 58.718 41.667 7.91 0.00 40.17 2.62
257 816 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
258 817 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
259 818 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
260 819 2.419667 GCTTTCGCCCCGCTTTATATA 58.580 47.619 0.00 0.00 0.00 0.86
261 820 3.007635 GCTTTCGCCCCGCTTTATATAT 58.992 45.455 0.00 0.00 0.00 0.86
262 821 4.186159 GCTTTCGCCCCGCTTTATATATA 58.814 43.478 0.00 0.00 0.00 0.86
263 822 4.632688 GCTTTCGCCCCGCTTTATATATAA 59.367 41.667 0.81 0.81 0.00 0.98
264 823 5.122711 GCTTTCGCCCCGCTTTATATATAAA 59.877 40.000 15.47 15.47 0.00 1.40
276 835 5.866335 TTATATATAAAGCAAACCGCCCG 57.134 39.130 2.56 0.00 44.04 6.13
277 836 2.335316 ATATAAAGCAAACCGCCCGA 57.665 45.000 0.00 0.00 44.04 5.14
278 837 2.335316 TATAAAGCAAACCGCCCGAT 57.665 45.000 0.00 0.00 44.04 4.18
279 838 1.021968 ATAAAGCAAACCGCCCGATC 58.978 50.000 0.00 0.00 44.04 3.69
280 839 1.027792 TAAAGCAAACCGCCCGATCC 61.028 55.000 0.00 0.00 44.04 3.36
281 840 3.561120 AAGCAAACCGCCCGATCCA 62.561 57.895 0.00 0.00 44.04 3.41
282 841 3.810896 GCAAACCGCCCGATCCAC 61.811 66.667 0.00 0.00 32.94 4.02
283 842 2.359354 CAAACCGCCCGATCCACA 60.359 61.111 0.00 0.00 0.00 4.17
284 843 1.969064 CAAACCGCCCGATCCACAA 60.969 57.895 0.00 0.00 0.00 3.33
285 844 1.228306 AAACCGCCCGATCCACAAA 60.228 52.632 0.00 0.00 0.00 2.83
286 845 1.520600 AAACCGCCCGATCCACAAAC 61.521 55.000 0.00 0.00 0.00 2.93
287 846 2.359354 CCGCCCGATCCACAAACA 60.359 61.111 0.00 0.00 0.00 2.83
288 847 1.969064 CCGCCCGATCCACAAACAA 60.969 57.895 0.00 0.00 0.00 2.83
289 848 1.209127 CGCCCGATCCACAAACAAC 59.791 57.895 0.00 0.00 0.00 3.32
290 849 1.209127 GCCCGATCCACAAACAACG 59.791 57.895 0.00 0.00 0.00 4.10
291 850 1.231958 GCCCGATCCACAAACAACGA 61.232 55.000 0.00 0.00 0.00 3.85
292 851 1.448985 CCCGATCCACAAACAACGAT 58.551 50.000 0.00 0.00 0.00 3.73
293 852 2.623535 CCCGATCCACAAACAACGATA 58.376 47.619 0.00 0.00 0.00 2.92
294 853 2.350498 CCCGATCCACAAACAACGATAC 59.650 50.000 0.00 0.00 0.00 2.24
295 854 2.997303 CCGATCCACAAACAACGATACA 59.003 45.455 0.00 0.00 0.00 2.29
296 855 3.433957 CCGATCCACAAACAACGATACAA 59.566 43.478 0.00 0.00 0.00 2.41
297 856 4.435518 CCGATCCACAAACAACGATACAAG 60.436 45.833 0.00 0.00 0.00 3.16
298 857 4.387559 CGATCCACAAACAACGATACAAGA 59.612 41.667 0.00 0.00 0.00 3.02
299 858 5.444613 CGATCCACAAACAACGATACAAGAG 60.445 44.000 0.00 0.00 0.00 2.85
300 859 4.699637 TCCACAAACAACGATACAAGAGT 58.300 39.130 0.00 0.00 0.00 3.24
301 860 5.120399 TCCACAAACAACGATACAAGAGTT 58.880 37.500 0.00 0.00 0.00 3.01
302 861 5.235616 TCCACAAACAACGATACAAGAGTTC 59.764 40.000 0.00 0.00 0.00 3.01
303 862 5.007234 CCACAAACAACGATACAAGAGTTCA 59.993 40.000 0.00 0.00 0.00 3.18
304 863 5.901884 CACAAACAACGATACAAGAGTTCAC 59.098 40.000 0.00 0.00 0.00 3.18
305 864 5.583061 ACAAACAACGATACAAGAGTTCACA 59.417 36.000 0.00 0.00 0.00 3.58
306 865 5.652744 AACAACGATACAAGAGTTCACAC 57.347 39.130 0.00 0.00 0.00 3.82
307 866 4.689071 ACAACGATACAAGAGTTCACACA 58.311 39.130 0.00 0.00 0.00 3.72
308 867 5.113383 ACAACGATACAAGAGTTCACACAA 58.887 37.500 0.00 0.00 0.00 3.33
309 868 5.006358 ACAACGATACAAGAGTTCACACAAC 59.994 40.000 0.00 0.00 0.00 3.32
310 869 4.689071 ACGATACAAGAGTTCACACAACA 58.311 39.130 0.00 0.00 0.00 3.33
311 870 4.506654 ACGATACAAGAGTTCACACAACAC 59.493 41.667 0.00 0.00 0.00 3.32
312 871 4.375005 CGATACAAGAGTTCACACAACACG 60.375 45.833 0.00 0.00 0.00 4.49
313 872 1.396996 ACAAGAGTTCACACAACACGC 59.603 47.619 0.00 0.00 0.00 5.34
314 873 1.396648 CAAGAGTTCACACAACACGCA 59.603 47.619 0.00 0.00 0.00 5.24
315 874 1.953559 AGAGTTCACACAACACGCAT 58.046 45.000 0.00 0.00 0.00 4.73
316 875 1.599071 AGAGTTCACACAACACGCATG 59.401 47.619 0.00 0.00 0.00 4.06
317 876 0.029300 AGTTCACACAACACGCATGC 59.971 50.000 7.91 7.91 0.00 4.06
318 877 0.934436 GTTCACACAACACGCATGCC 60.934 55.000 13.15 0.00 0.00 4.40
319 878 1.379642 TTCACACAACACGCATGCCA 61.380 50.000 13.15 0.00 0.00 4.92
320 879 1.065436 CACACAACACGCATGCCAA 59.935 52.632 13.15 0.00 0.00 4.52
321 880 0.527169 CACACAACACGCATGCCAAA 60.527 50.000 13.15 0.00 0.00 3.28
322 881 0.248990 ACACAACACGCATGCCAAAG 60.249 50.000 13.15 0.00 0.00 2.77
323 882 0.940519 CACAACACGCATGCCAAAGG 60.941 55.000 13.15 0.00 0.00 3.11
334 893 3.052181 GCCAAAGGCGAGAGAGTAC 57.948 57.895 0.00 0.00 39.62 2.73
335 894 0.246635 GCCAAAGGCGAGAGAGTACA 59.753 55.000 0.00 0.00 39.62 2.90
336 895 1.997669 CCAAAGGCGAGAGAGTACAC 58.002 55.000 0.00 0.00 0.00 2.90
337 896 1.272490 CCAAAGGCGAGAGAGTACACA 59.728 52.381 0.00 0.00 0.00 3.72
338 897 2.329379 CAAAGGCGAGAGAGTACACAC 58.671 52.381 0.00 0.00 0.00 3.82
339 898 1.617322 AAGGCGAGAGAGTACACACA 58.383 50.000 0.00 0.00 0.00 3.72
340 899 0.882474 AGGCGAGAGAGTACACACAC 59.118 55.000 0.00 0.00 0.00 3.82
341 900 0.596577 GGCGAGAGAGTACACACACA 59.403 55.000 0.00 0.00 0.00 3.72
342 901 1.401670 GGCGAGAGAGTACACACACAG 60.402 57.143 0.00 0.00 0.00 3.66
343 902 1.535896 GCGAGAGAGTACACACACAGA 59.464 52.381 0.00 0.00 0.00 3.41
344 903 2.413502 GCGAGAGAGTACACACACAGAG 60.414 54.545 0.00 0.00 0.00 3.35
345 904 3.067833 CGAGAGAGTACACACACAGAGA 58.932 50.000 0.00 0.00 0.00 3.10
346 905 3.124466 CGAGAGAGTACACACACAGAGAG 59.876 52.174 0.00 0.00 0.00 3.20
347 906 4.069304 GAGAGAGTACACACACAGAGAGT 58.931 47.826 0.00 0.00 0.00 3.24
348 907 5.230323 AGAGAGTACACACACAGAGAGTA 57.770 43.478 0.00 0.00 0.00 2.59
349 908 5.811190 AGAGAGTACACACACAGAGAGTAT 58.189 41.667 0.00 0.00 0.00 2.12
350 909 6.948589 AGAGAGTACACACACAGAGAGTATA 58.051 40.000 0.00 0.00 0.00 1.47
351 910 7.395617 AGAGAGTACACACACAGAGAGTATAA 58.604 38.462 0.00 0.00 0.00 0.98
352 911 7.551262 AGAGAGTACACACACAGAGAGTATAAG 59.449 40.741 0.00 0.00 0.00 1.73
353 912 6.600032 AGAGTACACACACAGAGAGTATAAGG 59.400 42.308 0.00 0.00 0.00 2.69
354 913 6.246919 AGTACACACACAGAGAGTATAAGGT 58.753 40.000 0.00 0.00 0.00 3.50
355 914 6.720288 AGTACACACACAGAGAGTATAAGGTT 59.280 38.462 0.00 0.00 0.00 3.50
356 915 7.886970 AGTACACACACAGAGAGTATAAGGTTA 59.113 37.037 0.00 0.00 0.00 2.85
357 916 7.534723 ACACACACAGAGAGTATAAGGTTAA 57.465 36.000 0.00 0.00 0.00 2.01
358 917 8.135382 ACACACACAGAGAGTATAAGGTTAAT 57.865 34.615 0.00 0.00 0.00 1.40
359 918 8.035394 ACACACACAGAGAGTATAAGGTTAATG 58.965 37.037 0.00 0.00 0.00 1.90
360 919 7.010552 CACACACAGAGAGTATAAGGTTAATGC 59.989 40.741 0.00 0.00 0.00 3.56
361 920 7.093289 ACACACAGAGAGTATAAGGTTAATGCT 60.093 37.037 0.00 0.00 0.00 3.79
362 921 7.223582 CACACAGAGAGTATAAGGTTAATGCTG 59.776 40.741 0.00 0.00 0.00 4.41
363 922 7.124298 ACACAGAGAGTATAAGGTTAATGCTGA 59.876 37.037 0.00 0.00 0.00 4.26
364 923 7.651304 CACAGAGAGTATAAGGTTAATGCTGAG 59.349 40.741 0.00 0.00 0.00 3.35
365 924 7.151308 CAGAGAGTATAAGGTTAATGCTGAGG 58.849 42.308 0.00 0.00 0.00 3.86
366 925 6.268847 AGAGAGTATAAGGTTAATGCTGAGGG 59.731 42.308 0.00 0.00 0.00 4.30
367 926 4.974399 AGTATAAGGTTAATGCTGAGGGC 58.026 43.478 0.00 0.00 42.22 5.19
376 935 4.481195 GCTGAGGGCACAACTCAA 57.519 55.556 0.00 0.00 43.74 3.02
377 936 2.952714 GCTGAGGGCACAACTCAAT 58.047 52.632 0.00 0.00 43.74 2.57
378 937 2.113860 GCTGAGGGCACAACTCAATA 57.886 50.000 0.00 0.00 43.74 1.90
379 938 2.436417 GCTGAGGGCACAACTCAATAA 58.564 47.619 0.00 0.00 43.74 1.40
380 939 2.421424 GCTGAGGGCACAACTCAATAAG 59.579 50.000 0.00 0.00 43.74 1.73
381 940 2.421424 CTGAGGGCACAACTCAATAAGC 59.579 50.000 0.00 0.00 43.74 3.09
382 941 1.745653 GAGGGCACAACTCAATAAGCC 59.254 52.381 0.00 0.00 41.29 4.35
384 943 1.544724 GGCACAACTCAATAAGCCCA 58.455 50.000 0.00 0.00 36.17 5.36
385 944 2.102578 GGCACAACTCAATAAGCCCAT 58.897 47.619 0.00 0.00 36.17 4.00
386 945 3.287222 GGCACAACTCAATAAGCCCATA 58.713 45.455 0.00 0.00 36.17 2.74
387 946 3.316308 GGCACAACTCAATAAGCCCATAG 59.684 47.826 0.00 0.00 36.17 2.23
388 947 4.199310 GCACAACTCAATAAGCCCATAGA 58.801 43.478 0.00 0.00 0.00 1.98
389 948 4.640201 GCACAACTCAATAAGCCCATAGAA 59.360 41.667 0.00 0.00 0.00 2.10
390 949 5.125417 GCACAACTCAATAAGCCCATAGAAA 59.875 40.000 0.00 0.00 0.00 2.52
391 950 6.183360 GCACAACTCAATAAGCCCATAGAAAT 60.183 38.462 0.00 0.00 0.00 2.17
392 951 7.013274 GCACAACTCAATAAGCCCATAGAAATA 59.987 37.037 0.00 0.00 0.00 1.40
393 952 8.902806 CACAACTCAATAAGCCCATAGAAATAA 58.097 33.333 0.00 0.00 0.00 1.40
394 953 9.474313 ACAACTCAATAAGCCCATAGAAATAAA 57.526 29.630 0.00 0.00 0.00 1.40
395 954 9.736023 CAACTCAATAAGCCCATAGAAATAAAC 57.264 33.333 0.00 0.00 0.00 2.01
396 955 9.474313 AACTCAATAAGCCCATAGAAATAAACA 57.526 29.630 0.00 0.00 0.00 2.83
397 956 9.125026 ACTCAATAAGCCCATAGAAATAAACAG 57.875 33.333 0.00 0.00 0.00 3.16
398 957 7.940850 TCAATAAGCCCATAGAAATAAACAGC 58.059 34.615 0.00 0.00 0.00 4.40
399 958 7.559533 TCAATAAGCCCATAGAAATAAACAGCA 59.440 33.333 0.00 0.00 0.00 4.41
400 959 5.582689 AAGCCCATAGAAATAAACAGCAC 57.417 39.130 0.00 0.00 0.00 4.40
401 960 4.599041 AGCCCATAGAAATAAACAGCACA 58.401 39.130 0.00 0.00 0.00 4.57
402 961 5.016173 AGCCCATAGAAATAAACAGCACAA 58.984 37.500 0.00 0.00 0.00 3.33
403 962 5.102313 GCCCATAGAAATAAACAGCACAAC 58.898 41.667 0.00 0.00 0.00 3.32
404 963 5.336372 GCCCATAGAAATAAACAGCACAACA 60.336 40.000 0.00 0.00 0.00 3.33
405 964 6.686630 CCCATAGAAATAAACAGCACAACAA 58.313 36.000 0.00 0.00 0.00 2.83
406 965 7.151308 CCCATAGAAATAAACAGCACAACAAA 58.849 34.615 0.00 0.00 0.00 2.83
407 966 7.329226 CCCATAGAAATAAACAGCACAACAAAG 59.671 37.037 0.00 0.00 0.00 2.77
408 967 8.081633 CCATAGAAATAAACAGCACAACAAAGA 58.918 33.333 0.00 0.00 0.00 2.52
409 968 9.121517 CATAGAAATAAACAGCACAACAAAGAG 57.878 33.333 0.00 0.00 0.00 2.85
410 969 6.507023 AGAAATAAACAGCACAACAAAGAGG 58.493 36.000 0.00 0.00 0.00 3.69
411 970 6.321181 AGAAATAAACAGCACAACAAAGAGGA 59.679 34.615 0.00 0.00 0.00 3.71
412 971 6.463995 AATAAACAGCACAACAAAGAGGAA 57.536 33.333 0.00 0.00 0.00 3.36
413 972 3.782889 AACAGCACAACAAAGAGGAAC 57.217 42.857 0.00 0.00 0.00 3.62
414 973 2.024414 ACAGCACAACAAAGAGGAACC 58.976 47.619 0.00 0.00 0.00 3.62
415 974 1.338020 CAGCACAACAAAGAGGAACCC 59.662 52.381 0.00 0.00 0.00 4.11
416 975 1.064017 AGCACAACAAAGAGGAACCCA 60.064 47.619 0.00 0.00 0.00 4.51
417 976 1.754226 GCACAACAAAGAGGAACCCAA 59.246 47.619 0.00 0.00 0.00 4.12
418 977 2.223805 GCACAACAAAGAGGAACCCAAG 60.224 50.000 0.00 0.00 0.00 3.61
419 978 2.362077 CACAACAAAGAGGAACCCAAGG 59.638 50.000 0.00 0.00 0.00 3.61
420 979 1.963515 CAACAAAGAGGAACCCAAGGG 59.036 52.381 2.91 2.91 42.03 3.95
432 991 3.771160 CAAGGGGACGGTCCGGAG 61.771 72.222 20.35 7.06 37.43 4.63
467 1026 3.512033 GGTAACTGCAGGTCTAGTCAG 57.488 52.381 19.93 0.00 0.00 3.51
468 1027 2.166664 GGTAACTGCAGGTCTAGTCAGG 59.833 54.545 19.93 0.00 0.00 3.86
469 1028 0.610687 AACTGCAGGTCTAGTCAGGC 59.389 55.000 19.93 0.00 0.00 4.85
470 1029 0.252012 ACTGCAGGTCTAGTCAGGCT 60.252 55.000 19.93 0.00 0.00 4.58
471 1030 0.459489 CTGCAGGTCTAGTCAGGCTC 59.541 60.000 5.57 0.00 0.00 4.70
472 1031 0.972983 TGCAGGTCTAGTCAGGCTCC 60.973 60.000 0.00 0.00 0.00 4.70
473 1032 2.010582 GCAGGTCTAGTCAGGCTCCG 62.011 65.000 0.00 0.00 0.00 4.63
474 1033 0.394488 CAGGTCTAGTCAGGCTCCGA 60.394 60.000 0.00 0.00 0.00 4.55
475 1034 0.553819 AGGTCTAGTCAGGCTCCGAT 59.446 55.000 0.00 0.00 0.00 4.18
476 1035 0.671251 GGTCTAGTCAGGCTCCGATG 59.329 60.000 0.00 0.00 0.00 3.84
477 1036 0.671251 GTCTAGTCAGGCTCCGATGG 59.329 60.000 0.00 0.00 0.00 3.51
478 1037 0.468214 TCTAGTCAGGCTCCGATGGG 60.468 60.000 0.00 0.00 0.00 4.00
479 1038 1.457643 TAGTCAGGCTCCGATGGGG 60.458 63.158 0.00 0.00 37.02 4.96
480 1039 2.946988 TAGTCAGGCTCCGATGGGGG 62.947 65.000 0.00 0.00 36.60 5.40
481 1040 4.414956 TCAGGCTCCGATGGGGGT 62.415 66.667 0.00 0.00 35.58 4.95
482 1041 4.181010 CAGGCTCCGATGGGGGTG 62.181 72.222 0.00 0.00 35.58 4.61
489 1048 4.856801 CGATGGGGGTGGCGGAAG 62.857 72.222 0.00 0.00 0.00 3.46
501 1060 2.904905 CGGAAGCGGGTCCCAATA 59.095 61.111 9.12 0.00 33.74 1.90
513 1072 2.560542 GGTCCCAATATGCACACAACAA 59.439 45.455 0.00 0.00 0.00 2.83
518 1077 4.322574 CCCAATATGCACACAACAATCCAA 60.323 41.667 0.00 0.00 0.00 3.53
533 1092 4.021456 ACAATCCAAAATCCGAAAACCCTC 60.021 41.667 0.00 0.00 0.00 4.30
544 1104 3.375299 CCGAAAACCCTCAAGTCATCATC 59.625 47.826 0.00 0.00 0.00 2.92
559 1119 7.615582 AGTCATCATCAAATCGTTGTAATGT 57.384 32.000 0.00 0.00 36.07 2.71
570 1130 3.119424 TCGTTGTAATGTCATCGCCACTA 60.119 43.478 0.00 0.00 32.70 2.74
589 1149 5.647589 CACTAGTGGAAATTACGCTACAGA 58.352 41.667 15.49 0.00 0.00 3.41
605 1165 5.002654 CGCTACAGATATAAGAATTCGACGC 59.997 44.000 0.00 0.00 0.00 5.19
643 1203 7.552459 AGGTTGGCCAATAATTTGTAACATAC 58.448 34.615 23.66 2.65 37.19 2.39
657 1217 7.755582 TTGTAACATACGATGTGATTGAGAG 57.244 36.000 0.00 0.00 44.07 3.20
705 1267 3.743521 TGGACATTGCACTATCCTATGC 58.256 45.455 2.79 0.00 42.40 3.14
748 1311 5.914635 TGAGCAGCGTTTTCATTTCTTTTAG 59.085 36.000 0.00 0.00 0.00 1.85
754 1317 9.829637 CAGCGTTTTCATTTCTTTTAGTTTAAC 57.170 29.630 0.00 0.00 0.00 2.01
772 1335 2.052782 ACTCTTGTTGGGTTGTCACC 57.947 50.000 0.00 0.00 43.37 4.02
780 1343 2.251642 GGGTTGTCACCGTCAGTGC 61.252 63.158 0.00 0.00 46.81 4.40
853 1424 3.490419 GCCGTACGTGGAAGATTACTCAT 60.490 47.826 15.21 0.00 0.00 2.90
950 1532 3.973657 AGAACGAAACGTAAGAAGAGCA 58.026 40.909 0.00 0.00 39.99 4.26
954 1536 3.489785 ACGAAACGTAAGAAGAGCACAAG 59.510 43.478 0.00 0.00 38.73 3.16
962 1544 5.163913 CGTAAGAAGAGCACAAGGATTTCTG 60.164 44.000 0.00 0.00 43.02 3.02
1008 1590 3.016971 CTCCCCTCCATGGCCACA 61.017 66.667 8.16 0.00 0.00 4.17
1075 1657 2.204151 CCCTCCTCCACCCAAGGT 60.204 66.667 0.00 0.00 35.62 3.50
1101 1683 1.912417 AGATATCTCCGAGGTTCCCG 58.088 55.000 0.00 0.00 0.00 5.14
1403 1985 9.793252 CTCCTGAAATGATTTAACTTGTAATGG 57.207 33.333 0.00 0.00 0.00 3.16
1404 1986 9.527157 TCCTGAAATGATTTAACTTGTAATGGA 57.473 29.630 0.00 0.00 0.00 3.41
1459 2046 6.341316 TGACTAGCTTGGTTGATATCTGAAC 58.659 40.000 3.98 0.93 0.00 3.18
1536 2123 1.825474 TCTCTGAAATCGACCCACCTC 59.175 52.381 0.00 0.00 0.00 3.85
1539 2126 1.153429 GAAATCGACCCACCTCCCG 60.153 63.158 0.00 0.00 0.00 5.14
1725 2316 4.499399 CAGCAAATTGAGCATTCTGATTCG 59.501 41.667 0.00 0.00 0.00 3.34
1750 2341 4.212636 CAGTAACCTGTAAACTGGAAACCG 59.787 45.833 12.43 0.41 37.55 4.44
1772 2363 4.840772 CGTCAACTTTGATTTAGTTCGCTG 59.159 41.667 0.00 0.00 39.73 5.18
1808 2399 2.031333 GCAGCAGCATGGATTAGCTTAC 60.031 50.000 0.00 0.00 39.50 2.34
1869 2460 8.650143 AGGGATATCTTATCTTGTCTTCTCTC 57.350 38.462 2.05 0.00 0.00 3.20
1870 2461 7.673926 AGGGATATCTTATCTTGTCTTCTCTCC 59.326 40.741 2.05 0.00 0.00 3.71
1885 2476 7.056635 GTCTTCTCTCCCAATTTTGATCCATA 58.943 38.462 0.00 0.00 0.00 2.74
1893 2484 7.410174 TCCCAATTTTGATCCATAGTGTTACT 58.590 34.615 0.00 0.00 0.00 2.24
1979 2570 2.644798 ACTTCTGCCTATTGTGGGTCTT 59.355 45.455 0.00 0.00 0.00 3.01
2042 2633 4.437858 CGATGTAAGTCCGCACATAAAG 57.562 45.455 0.00 0.00 35.55 1.85
2046 2637 4.382291 TGTAAGTCCGCACATAAAGTTGT 58.618 39.130 0.00 0.00 0.00 3.32
2084 2854 4.996788 TTCCACGGATTTCCTACTACTC 57.003 45.455 0.00 0.00 0.00 2.59
2266 3041 3.374367 GTGGAAAAAGCTTCCGGATACTC 59.626 47.826 4.15 0.00 41.43 2.59
2284 3059 8.879759 CGGATACTCAAGTAAGCATAAGAAAAA 58.120 33.333 0.00 0.00 33.76 1.94
2450 3225 8.562892 CCATATCCAGTTTGCTAACAGAATAAG 58.437 37.037 13.46 4.87 36.70 1.73
2477 3252 3.011369 TCAGAAGAACTACCTCCTGGCTA 59.989 47.826 0.00 0.00 36.63 3.93
2486 3261 0.173708 CCTCCTGGCTACTCGTGTTC 59.826 60.000 0.00 0.00 0.00 3.18
2528 3303 4.568072 TCTGCTACTGGAAATTTAGCCA 57.432 40.909 7.29 3.43 37.95 4.75
2595 3370 5.658634 AGACCTTCAGTTAGATATGTGAGCA 59.341 40.000 0.00 0.00 0.00 4.26
2665 3440 7.472543 AGTCTTTAAAACAACTGTGCACTTAG 58.527 34.615 19.41 10.62 0.00 2.18
2672 3447 4.968259 ACAACTGTGCACTTAGTTCCATA 58.032 39.130 19.41 0.00 35.08 2.74
2801 3576 5.636965 GCATGTCTGATGATACATCTGGTAC 59.363 44.000 14.94 9.56 34.12 3.34
2808 3583 2.691526 TGATACATCTGGTACCACCGTC 59.308 50.000 11.60 4.45 42.58 4.79
2839 3615 7.227156 ACAGAGTTGTCTTGATTTAAGGTCAT 58.773 34.615 0.00 0.00 37.01 3.06
2863 3639 2.093235 ACTTCTCAAGCTCTACATGGGC 60.093 50.000 0.00 0.00 0.00 5.36
2864 3640 0.833287 TCTCAAGCTCTACATGGGCC 59.167 55.000 0.00 0.00 0.00 5.80
2865 3641 0.835941 CTCAAGCTCTACATGGGCCT 59.164 55.000 4.53 0.00 0.00 5.19
2866 3642 2.042464 CTCAAGCTCTACATGGGCCTA 58.958 52.381 4.53 0.00 0.00 3.93
2867 3643 1.762957 TCAAGCTCTACATGGGCCTAC 59.237 52.381 4.53 0.00 0.00 3.18
2868 3644 1.486310 CAAGCTCTACATGGGCCTACA 59.514 52.381 4.53 0.00 0.00 2.74
2869 3645 2.105477 CAAGCTCTACATGGGCCTACAT 59.895 50.000 4.53 0.00 0.00 2.29
2974 3750 1.683943 ATCCATGGCTTGAATGTCCG 58.316 50.000 6.96 0.00 0.00 4.79
2981 3757 3.355378 TGGCTTGAATGTCCGATGAAAT 58.645 40.909 0.00 0.00 0.00 2.17
3216 3994 7.561251 TCAAATGGTATTAGCAAGCTACAGTA 58.439 34.615 0.40 0.00 0.00 2.74
3220 3998 8.980481 ATGGTATTAGCAAGCTACAGTATTTT 57.020 30.769 0.40 0.00 0.00 1.82
3429 4214 5.467063 GCTAAGGCTGATAAAGACCATACAC 59.533 44.000 0.00 0.00 32.22 2.90
3534 4319 8.780846 TTCAGCTGTTATTTAAATTAGACGGA 57.219 30.769 14.67 3.98 0.00 4.69
3537 4322 6.257193 AGCTGTTATTTAAATTAGACGGACGG 59.743 38.462 5.91 1.84 0.00 4.79
3578 4363 3.486383 TCCTTCACCACACCTTTTGATC 58.514 45.455 0.00 0.00 0.00 2.92
3584 4369 3.753272 CACCACACCTTTTGATCGAGATT 59.247 43.478 0.00 0.00 0.00 2.40
3608 4393 2.102420 GGTTTTTCTTGGGAGTTGGTGG 59.898 50.000 0.00 0.00 0.00 4.61
3621 4406 6.215841 TGGGAGTTGGTGGATGTTAACTAATA 59.784 38.462 7.22 0.00 33.83 0.98
3622 4407 7.114095 GGGAGTTGGTGGATGTTAACTAATAA 58.886 38.462 7.22 0.00 33.83 1.40
3731 4516 2.219674 GTGATATTTCTTCAGGAGCGCG 59.780 50.000 0.00 0.00 0.00 6.86
3737 4522 2.989253 TTCAGGAGCGCGTCAGGA 60.989 61.111 8.43 3.01 0.00 3.86
3748 4533 0.169009 GCGTCAGGATCAGTTTTGCC 59.831 55.000 0.00 0.00 0.00 4.52
3758 4543 0.657368 CAGTTTTGCCGCTGTTCGTC 60.657 55.000 0.00 0.00 36.19 4.20
3862 4652 3.443037 CGAAGCTTAGATGTGAGACCAG 58.557 50.000 0.00 0.00 0.00 4.00
3949 4739 5.200483 TCTTTTGTATATTCCCAGGCTTGG 58.800 41.667 8.15 8.15 44.60 3.61
4020 4822 2.570169 CGCCTTTGAACATGTTGTACG 58.430 47.619 17.58 7.17 0.00 3.67
4077 4887 7.133133 TCCAGACCTACTTTCTTTTACTTGT 57.867 36.000 0.00 0.00 0.00 3.16
4093 4903 2.686405 ACTTGTGTCGACTGTGTGTAGA 59.314 45.455 17.92 0.00 0.00 2.59
4097 4907 1.067846 TGTCGACTGTGTGTAGATGCC 60.068 52.381 17.92 0.00 33.12 4.40
4127 4937 2.892215 TGCATTTCCATTGCTCACTTGA 59.108 40.909 0.00 0.00 40.77 3.02
4190 5000 5.112220 TCACTGTCATGTTTTGCAGAATC 57.888 39.130 0.00 0.00 35.08 2.52
4211 5022 2.036217 CAGCTGCAGGGTTTTTGAATCA 59.964 45.455 17.12 0.00 0.00 2.57
4223 5034 5.121142 GGTTTTTGAATCACTGCATTCATGG 59.879 40.000 1.50 0.00 41.42 3.66
4270 5081 1.522668 TTGTGACCATTTCTGCTCGG 58.477 50.000 0.00 0.00 0.00 4.63
4315 5126 5.729510 AGTTCTTTGAGATCTGCTAACTCC 58.270 41.667 0.00 0.00 0.00 3.85
4399 5210 1.256812 CGCCATCCCAACTCCTTTTT 58.743 50.000 0.00 0.00 0.00 1.94
4401 5212 1.338105 GCCATCCCAACTCCTTTTTGC 60.338 52.381 0.00 0.00 0.00 3.68
4419 5230 4.690184 TTGCGATCGAGTGAAGTACTAA 57.310 40.909 21.57 0.00 40.53 2.24
4438 5249 8.848182 AGTACTAACTCCGTCCTGATTTATTAG 58.152 37.037 0.00 0.00 0.00 1.73
4441 5252 5.532664 ACTCCGTCCTGATTTATTAGTCC 57.467 43.478 0.00 0.00 0.00 3.85
4662 5473 1.992557 TGGAGGCAGTAACAGGGATTT 59.007 47.619 0.00 0.00 0.00 2.17
4663 5474 2.378547 TGGAGGCAGTAACAGGGATTTT 59.621 45.455 0.00 0.00 0.00 1.82
4665 5476 3.945921 GGAGGCAGTAACAGGGATTTTAC 59.054 47.826 0.00 0.00 0.00 2.01
4666 5477 4.566907 GGAGGCAGTAACAGGGATTTTACA 60.567 45.833 0.00 0.00 31.66 2.41
4667 5478 4.589908 AGGCAGTAACAGGGATTTTACAG 58.410 43.478 0.00 0.00 31.66 2.74
4668 5479 4.042934 AGGCAGTAACAGGGATTTTACAGT 59.957 41.667 0.00 0.00 31.66 3.55
4669 5480 4.156008 GGCAGTAACAGGGATTTTACAGTG 59.844 45.833 0.00 0.00 31.66 3.66
4670 5481 5.001232 GCAGTAACAGGGATTTTACAGTGA 58.999 41.667 0.00 0.00 31.66 3.41
4671 5482 5.648092 GCAGTAACAGGGATTTTACAGTGAT 59.352 40.000 0.00 0.00 31.66 3.06
4672 5483 6.183360 GCAGTAACAGGGATTTTACAGTGATC 60.183 42.308 0.00 0.00 31.66 2.92
4673 5484 6.036083 CAGTAACAGGGATTTTACAGTGATCG 59.964 42.308 0.00 0.00 31.66 3.69
4689 5500 3.125146 GTGATCGCTAACATGTGCTTCAA 59.875 43.478 0.00 0.00 0.00 2.69
4701 5512 2.072298 GTGCTTCAACTCGAGCTCAAT 58.928 47.619 13.61 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 340 6.753913 AACTAGGAGATGGCATCAATAGAA 57.246 37.500 27.93 8.37 0.00 2.10
88 637 2.572191 TGTGACGCCGGATAAACTAG 57.428 50.000 5.05 0.00 0.00 2.57
95 644 2.421739 GGCTATGTGACGCCGGAT 59.578 61.111 5.05 0.00 36.45 4.18
112 661 3.659183 ACTGATGGGGAAGATCCAAAG 57.341 47.619 0.00 0.00 38.64 2.77
114 663 3.324846 CGATACTGATGGGGAAGATCCAA 59.675 47.826 0.00 0.00 38.64 3.53
124 673 0.179084 AACACGGCGATACTGATGGG 60.179 55.000 16.62 0.00 0.00 4.00
125 674 0.930310 CAACACGGCGATACTGATGG 59.070 55.000 16.62 0.00 0.00 3.51
126 675 1.921243 TCAACACGGCGATACTGATG 58.079 50.000 16.62 6.52 0.00 3.07
127 676 2.890808 ATCAACACGGCGATACTGAT 57.109 45.000 16.62 12.82 0.00 2.90
135 684 2.933906 AGGTAAACATATCAACACGGCG 59.066 45.455 4.80 4.80 0.00 6.46
137 686 3.064820 GGCAGGTAAACATATCAACACGG 59.935 47.826 0.00 0.00 0.00 4.94
141 690 3.560068 CGGAGGCAGGTAAACATATCAAC 59.440 47.826 0.00 0.00 0.00 3.18
191 750 4.261741 CCAGGAACACATTCACTTTCCTTG 60.262 45.833 0.00 0.00 44.54 3.61
194 753 3.222603 ACCAGGAACACATTCACTTTCC 58.777 45.455 0.00 0.00 38.26 3.13
199 758 3.070018 CAGAGACCAGGAACACATTCAC 58.930 50.000 0.00 0.00 36.46 3.18
204 763 1.367471 CGCAGAGACCAGGAACACA 59.633 57.895 0.00 0.00 0.00 3.72
205 764 0.667792 GACGCAGAGACCAGGAACAC 60.668 60.000 0.00 0.00 0.00 3.32
207 766 1.079750 GGACGCAGAGACCAGGAAC 60.080 63.158 0.00 0.00 34.74 3.62
212 771 1.412710 GATATTGGGACGCAGAGACCA 59.587 52.381 0.00 0.00 36.37 4.02
241 800 6.730960 TTTATATATAAAGCGGGGCGAAAG 57.269 37.500 12.90 0.00 0.00 2.62
242 801 6.730960 CTTTATATATAAAGCGGGGCGAAA 57.269 37.500 25.10 1.66 41.69 3.46
253 812 5.996513 TCGGGCGGTTTGCTTTATATATAAA 59.003 36.000 15.47 15.47 45.43 1.40
254 813 5.549347 TCGGGCGGTTTGCTTTATATATAA 58.451 37.500 0.81 0.81 45.43 0.98
255 814 5.149973 TCGGGCGGTTTGCTTTATATATA 57.850 39.130 0.00 0.00 45.43 0.86
256 815 4.010667 TCGGGCGGTTTGCTTTATATAT 57.989 40.909 0.00 0.00 45.43 0.86
257 816 3.472283 TCGGGCGGTTTGCTTTATATA 57.528 42.857 0.00 0.00 45.43 0.86
258 817 2.335316 TCGGGCGGTTTGCTTTATAT 57.665 45.000 0.00 0.00 45.43 0.86
259 818 2.215196 GATCGGGCGGTTTGCTTTATA 58.785 47.619 0.00 0.00 45.43 0.98
260 819 1.021968 GATCGGGCGGTTTGCTTTAT 58.978 50.000 0.00 0.00 45.43 1.40
261 820 1.027792 GGATCGGGCGGTTTGCTTTA 61.028 55.000 0.00 0.00 45.43 1.85
262 821 2.340328 GGATCGGGCGGTTTGCTTT 61.340 57.895 0.00 0.00 45.43 3.51
263 822 2.750237 GGATCGGGCGGTTTGCTT 60.750 61.111 0.00 0.00 45.43 3.91
264 823 4.028490 TGGATCGGGCGGTTTGCT 62.028 61.111 0.00 0.00 45.43 3.91
265 824 3.810896 GTGGATCGGGCGGTTTGC 61.811 66.667 0.00 0.00 45.38 3.68
266 825 1.519751 TTTGTGGATCGGGCGGTTTG 61.520 55.000 0.00 0.00 0.00 2.93
267 826 1.228306 TTTGTGGATCGGGCGGTTT 60.228 52.632 0.00 0.00 0.00 3.27
268 827 1.969589 GTTTGTGGATCGGGCGGTT 60.970 57.895 0.00 0.00 0.00 4.44
269 828 2.359478 GTTTGTGGATCGGGCGGT 60.359 61.111 0.00 0.00 0.00 5.68
270 829 1.969064 TTGTTTGTGGATCGGGCGG 60.969 57.895 0.00 0.00 0.00 6.13
271 830 1.209127 GTTGTTTGTGGATCGGGCG 59.791 57.895 0.00 0.00 0.00 6.13
272 831 1.209127 CGTTGTTTGTGGATCGGGC 59.791 57.895 0.00 0.00 0.00 6.13
273 832 1.448985 ATCGTTGTTTGTGGATCGGG 58.551 50.000 0.00 0.00 0.00 5.14
274 833 2.997303 TGTATCGTTGTTTGTGGATCGG 59.003 45.455 0.00 0.00 0.00 4.18
275 834 4.387559 TCTTGTATCGTTGTTTGTGGATCG 59.612 41.667 0.00 0.00 0.00 3.69
276 835 5.408604 ACTCTTGTATCGTTGTTTGTGGATC 59.591 40.000 0.00 0.00 0.00 3.36
277 836 5.305585 ACTCTTGTATCGTTGTTTGTGGAT 58.694 37.500 0.00 0.00 0.00 3.41
278 837 4.699637 ACTCTTGTATCGTTGTTTGTGGA 58.300 39.130 0.00 0.00 0.00 4.02
279 838 5.007234 TGAACTCTTGTATCGTTGTTTGTGG 59.993 40.000 0.00 0.00 0.00 4.17
280 839 5.901884 GTGAACTCTTGTATCGTTGTTTGTG 59.098 40.000 0.00 0.00 0.00 3.33
281 840 5.583061 TGTGAACTCTTGTATCGTTGTTTGT 59.417 36.000 0.00 0.00 0.00 2.83
282 841 5.901884 GTGTGAACTCTTGTATCGTTGTTTG 59.098 40.000 0.00 0.00 0.00 2.93
283 842 5.583061 TGTGTGAACTCTTGTATCGTTGTTT 59.417 36.000 0.00 0.00 0.00 2.83
284 843 5.113383 TGTGTGAACTCTTGTATCGTTGTT 58.887 37.500 0.00 0.00 0.00 2.83
285 844 4.689071 TGTGTGAACTCTTGTATCGTTGT 58.311 39.130 0.00 0.00 0.00 3.32
286 845 5.006261 TGTTGTGTGAACTCTTGTATCGTTG 59.994 40.000 0.00 0.00 0.00 4.10
287 846 5.006358 GTGTTGTGTGAACTCTTGTATCGTT 59.994 40.000 0.00 0.00 0.00 3.85
288 847 4.506654 GTGTTGTGTGAACTCTTGTATCGT 59.493 41.667 0.00 0.00 0.00 3.73
289 848 4.375005 CGTGTTGTGTGAACTCTTGTATCG 60.375 45.833 0.00 0.00 0.00 2.92
290 849 4.608445 GCGTGTTGTGTGAACTCTTGTATC 60.608 45.833 0.00 0.00 0.00 2.24
291 850 3.247648 GCGTGTTGTGTGAACTCTTGTAT 59.752 43.478 0.00 0.00 0.00 2.29
292 851 2.605818 GCGTGTTGTGTGAACTCTTGTA 59.394 45.455 0.00 0.00 0.00 2.41
293 852 1.396996 GCGTGTTGTGTGAACTCTTGT 59.603 47.619 0.00 0.00 0.00 3.16
294 853 1.396648 TGCGTGTTGTGTGAACTCTTG 59.603 47.619 0.00 0.00 0.00 3.02
295 854 1.732941 TGCGTGTTGTGTGAACTCTT 58.267 45.000 0.00 0.00 0.00 2.85
296 855 1.599071 CATGCGTGTTGTGTGAACTCT 59.401 47.619 0.00 0.00 0.00 3.24
297 856 1.921573 GCATGCGTGTTGTGTGAACTC 60.922 52.381 0.00 0.00 0.00 3.01
298 857 0.029300 GCATGCGTGTTGTGTGAACT 59.971 50.000 0.00 0.00 0.00 3.01
299 858 0.934436 GGCATGCGTGTTGTGTGAAC 60.934 55.000 12.44 0.00 0.00 3.18
300 859 1.358402 GGCATGCGTGTTGTGTGAA 59.642 52.632 12.44 0.00 0.00 3.18
301 860 1.379642 TTGGCATGCGTGTTGTGTGA 61.380 50.000 12.44 0.00 0.00 3.58
302 861 0.527169 TTTGGCATGCGTGTTGTGTG 60.527 50.000 12.44 0.00 0.00 3.82
303 862 0.248990 CTTTGGCATGCGTGTTGTGT 60.249 50.000 12.44 0.00 0.00 3.72
304 863 0.940519 CCTTTGGCATGCGTGTTGTG 60.941 55.000 12.44 0.00 0.00 3.33
305 864 1.363443 CCTTTGGCATGCGTGTTGT 59.637 52.632 12.44 0.00 0.00 3.32
306 865 4.248402 CCTTTGGCATGCGTGTTG 57.752 55.556 12.44 0.52 0.00 3.33
316 875 0.246635 TGTACTCTCTCGCCTTTGGC 59.753 55.000 0.00 0.00 46.75 4.52
317 876 1.272490 TGTGTACTCTCTCGCCTTTGG 59.728 52.381 0.00 0.00 0.00 3.28
318 877 2.288213 TGTGTGTACTCTCTCGCCTTTG 60.288 50.000 0.00 0.00 0.00 2.77
319 878 1.961394 TGTGTGTACTCTCTCGCCTTT 59.039 47.619 0.00 0.00 0.00 3.11
320 879 1.269998 GTGTGTGTACTCTCTCGCCTT 59.730 52.381 0.00 0.00 0.00 4.35
321 880 0.882474 GTGTGTGTACTCTCTCGCCT 59.118 55.000 0.00 0.00 0.00 5.52
322 881 0.596577 TGTGTGTGTACTCTCTCGCC 59.403 55.000 0.00 0.00 0.00 5.54
323 882 1.535896 TCTGTGTGTGTACTCTCTCGC 59.464 52.381 0.00 0.00 0.00 5.03
324 883 3.067833 TCTCTGTGTGTGTACTCTCTCG 58.932 50.000 0.00 0.00 0.00 4.04
325 884 4.069304 ACTCTCTGTGTGTGTACTCTCTC 58.931 47.826 0.00 0.00 0.00 3.20
326 885 4.093472 ACTCTCTGTGTGTGTACTCTCT 57.907 45.455 0.00 0.00 0.00 3.10
327 886 7.201661 CCTTATACTCTCTGTGTGTGTACTCTC 60.202 44.444 0.00 0.00 0.00 3.20
328 887 6.600032 CCTTATACTCTCTGTGTGTGTACTCT 59.400 42.308 0.00 0.00 0.00 3.24
329 888 6.374894 ACCTTATACTCTCTGTGTGTGTACTC 59.625 42.308 0.00 0.00 0.00 2.59
330 889 6.246919 ACCTTATACTCTCTGTGTGTGTACT 58.753 40.000 0.00 0.00 0.00 2.73
331 890 6.512342 ACCTTATACTCTCTGTGTGTGTAC 57.488 41.667 0.00 0.00 0.00 2.90
332 891 8.640063 TTAACCTTATACTCTCTGTGTGTGTA 57.360 34.615 0.00 0.00 0.00 2.90
333 892 7.534723 TTAACCTTATACTCTCTGTGTGTGT 57.465 36.000 0.00 0.00 0.00 3.72
334 893 7.010552 GCATTAACCTTATACTCTCTGTGTGTG 59.989 40.741 0.00 0.00 0.00 3.82
335 894 7.042335 GCATTAACCTTATACTCTCTGTGTGT 58.958 38.462 0.00 0.00 0.00 3.72
336 895 7.223582 CAGCATTAACCTTATACTCTCTGTGTG 59.776 40.741 0.00 0.00 0.00 3.82
337 896 7.124298 TCAGCATTAACCTTATACTCTCTGTGT 59.876 37.037 0.00 0.00 0.00 3.72
338 897 7.492524 TCAGCATTAACCTTATACTCTCTGTG 58.507 38.462 0.00 0.00 0.00 3.66
339 898 7.201956 CCTCAGCATTAACCTTATACTCTCTGT 60.202 40.741 0.00 0.00 0.00 3.41
340 899 7.151308 CCTCAGCATTAACCTTATACTCTCTG 58.849 42.308 0.00 0.00 0.00 3.35
341 900 6.268847 CCCTCAGCATTAACCTTATACTCTCT 59.731 42.308 0.00 0.00 0.00 3.10
342 901 6.459923 CCCTCAGCATTAACCTTATACTCTC 58.540 44.000 0.00 0.00 0.00 3.20
343 902 5.221742 GCCCTCAGCATTAACCTTATACTCT 60.222 44.000 0.00 0.00 42.97 3.24
344 903 4.998033 GCCCTCAGCATTAACCTTATACTC 59.002 45.833 0.00 0.00 42.97 2.59
345 904 4.974399 GCCCTCAGCATTAACCTTATACT 58.026 43.478 0.00 0.00 42.97 2.12
359 918 2.113860 TATTGAGTTGTGCCCTCAGC 57.886 50.000 0.00 0.00 39.91 4.26
360 919 2.421424 GCTTATTGAGTTGTGCCCTCAG 59.579 50.000 0.00 0.00 39.91 3.35
361 920 2.436417 GCTTATTGAGTTGTGCCCTCA 58.564 47.619 0.00 0.00 37.18 3.86
362 921 1.745653 GGCTTATTGAGTTGTGCCCTC 59.254 52.381 0.00 0.00 34.81 4.30
363 922 1.839424 GGCTTATTGAGTTGTGCCCT 58.161 50.000 0.00 0.00 34.81 5.19
365 924 1.544724 TGGGCTTATTGAGTTGTGCC 58.455 50.000 0.00 0.00 39.61 5.01
366 925 4.199310 TCTATGGGCTTATTGAGTTGTGC 58.801 43.478 0.00 0.00 0.00 4.57
367 926 6.757897 TTTCTATGGGCTTATTGAGTTGTG 57.242 37.500 0.00 0.00 0.00 3.33
368 927 9.474313 TTTATTTCTATGGGCTTATTGAGTTGT 57.526 29.630 0.00 0.00 0.00 3.32
369 928 9.736023 GTTTATTTCTATGGGCTTATTGAGTTG 57.264 33.333 0.00 0.00 0.00 3.16
370 929 9.474313 TGTTTATTTCTATGGGCTTATTGAGTT 57.526 29.630 0.00 0.00 0.00 3.01
371 930 9.125026 CTGTTTATTTCTATGGGCTTATTGAGT 57.875 33.333 0.00 0.00 0.00 3.41
372 931 8.078596 GCTGTTTATTTCTATGGGCTTATTGAG 58.921 37.037 0.00 0.00 0.00 3.02
373 932 7.559533 TGCTGTTTATTTCTATGGGCTTATTGA 59.440 33.333 0.00 0.00 0.00 2.57
374 933 7.649306 GTGCTGTTTATTTCTATGGGCTTATTG 59.351 37.037 0.00 0.00 0.00 1.90
375 934 7.341769 TGTGCTGTTTATTTCTATGGGCTTATT 59.658 33.333 0.00 0.00 0.00 1.40
376 935 6.833416 TGTGCTGTTTATTTCTATGGGCTTAT 59.167 34.615 0.00 0.00 0.00 1.73
377 936 6.184068 TGTGCTGTTTATTTCTATGGGCTTA 58.816 36.000 0.00 0.00 0.00 3.09
378 937 5.016173 TGTGCTGTTTATTTCTATGGGCTT 58.984 37.500 0.00 0.00 0.00 4.35
379 938 4.599041 TGTGCTGTTTATTTCTATGGGCT 58.401 39.130 0.00 0.00 0.00 5.19
380 939 4.981806 TGTGCTGTTTATTTCTATGGGC 57.018 40.909 0.00 0.00 0.00 5.36
381 940 6.266168 TGTTGTGCTGTTTATTTCTATGGG 57.734 37.500 0.00 0.00 0.00 4.00
382 941 8.081633 TCTTTGTTGTGCTGTTTATTTCTATGG 58.918 33.333 0.00 0.00 0.00 2.74
383 942 9.121517 CTCTTTGTTGTGCTGTTTATTTCTATG 57.878 33.333 0.00 0.00 0.00 2.23
384 943 8.299570 CCTCTTTGTTGTGCTGTTTATTTCTAT 58.700 33.333 0.00 0.00 0.00 1.98
385 944 7.500892 TCCTCTTTGTTGTGCTGTTTATTTCTA 59.499 33.333 0.00 0.00 0.00 2.10
386 945 6.321181 TCCTCTTTGTTGTGCTGTTTATTTCT 59.679 34.615 0.00 0.00 0.00 2.52
387 946 6.503524 TCCTCTTTGTTGTGCTGTTTATTTC 58.496 36.000 0.00 0.00 0.00 2.17
388 947 6.463995 TCCTCTTTGTTGTGCTGTTTATTT 57.536 33.333 0.00 0.00 0.00 1.40
389 948 6.273071 GTTCCTCTTTGTTGTGCTGTTTATT 58.727 36.000 0.00 0.00 0.00 1.40
390 949 5.221244 GGTTCCTCTTTGTTGTGCTGTTTAT 60.221 40.000 0.00 0.00 0.00 1.40
391 950 4.097286 GGTTCCTCTTTGTTGTGCTGTTTA 59.903 41.667 0.00 0.00 0.00 2.01
392 951 3.119137 GGTTCCTCTTTGTTGTGCTGTTT 60.119 43.478 0.00 0.00 0.00 2.83
393 952 2.427095 GGTTCCTCTTTGTTGTGCTGTT 59.573 45.455 0.00 0.00 0.00 3.16
394 953 2.024414 GGTTCCTCTTTGTTGTGCTGT 58.976 47.619 0.00 0.00 0.00 4.40
395 954 1.338020 GGGTTCCTCTTTGTTGTGCTG 59.662 52.381 0.00 0.00 0.00 4.41
396 955 1.064017 TGGGTTCCTCTTTGTTGTGCT 60.064 47.619 0.00 0.00 0.00 4.40
397 956 1.398692 TGGGTTCCTCTTTGTTGTGC 58.601 50.000 0.00 0.00 0.00 4.57
398 957 2.362077 CCTTGGGTTCCTCTTTGTTGTG 59.638 50.000 0.00 0.00 0.00 3.33
399 958 2.666317 CCTTGGGTTCCTCTTTGTTGT 58.334 47.619 0.00 0.00 0.00 3.32
400 959 1.963515 CCCTTGGGTTCCTCTTTGTTG 59.036 52.381 0.00 0.00 0.00 3.33
401 960 1.133167 CCCCTTGGGTTCCTCTTTGTT 60.133 52.381 4.84 0.00 38.25 2.83
402 961 0.482887 CCCCTTGGGTTCCTCTTTGT 59.517 55.000 4.84 0.00 38.25 2.83
403 962 0.777446 TCCCCTTGGGTTCCTCTTTG 59.223 55.000 4.84 0.00 44.74 2.77
404 963 0.778083 GTCCCCTTGGGTTCCTCTTT 59.222 55.000 4.84 0.00 44.74 2.52
405 964 1.489560 CGTCCCCTTGGGTTCCTCTT 61.490 60.000 4.84 0.00 44.74 2.85
406 965 1.918800 CGTCCCCTTGGGTTCCTCT 60.919 63.158 4.84 0.00 44.74 3.69
407 966 2.669240 CGTCCCCTTGGGTTCCTC 59.331 66.667 4.84 0.00 44.74 3.71
408 967 2.933834 CCGTCCCCTTGGGTTCCT 60.934 66.667 4.84 0.00 44.74 3.36
409 968 3.254617 ACCGTCCCCTTGGGTTCC 61.255 66.667 4.84 0.00 44.74 3.62
410 969 2.350134 GACCGTCCCCTTGGGTTC 59.650 66.667 4.84 0.00 44.74 3.62
411 970 3.254617 GGACCGTCCCCTTGGGTT 61.255 66.667 6.25 0.00 44.74 4.11
415 974 3.771160 CTCCGGACCGTCCCCTTG 61.771 72.222 13.94 0.00 31.13 3.61
438 997 4.789075 GCAGTTACCTCGCGCCGA 62.789 66.667 0.00 1.17 0.00 5.54
440 999 3.188786 CTGCAGTTACCTCGCGCC 61.189 66.667 5.25 0.00 0.00 6.53
441 1000 3.188786 CCTGCAGTTACCTCGCGC 61.189 66.667 13.81 0.00 0.00 6.86
442 1001 1.805945 GACCTGCAGTTACCTCGCG 60.806 63.158 13.81 0.00 0.00 5.87
443 1002 0.815734 TAGACCTGCAGTTACCTCGC 59.184 55.000 13.81 0.00 0.00 5.03
444 1003 2.093106 ACTAGACCTGCAGTTACCTCG 58.907 52.381 13.81 0.00 0.00 4.63
445 1004 3.090037 TGACTAGACCTGCAGTTACCTC 58.910 50.000 13.81 0.52 0.00 3.85
446 1005 3.093057 CTGACTAGACCTGCAGTTACCT 58.907 50.000 13.81 6.33 0.00 3.08
447 1006 2.166664 CCTGACTAGACCTGCAGTTACC 59.833 54.545 13.81 0.00 0.00 2.85
448 1007 2.417515 GCCTGACTAGACCTGCAGTTAC 60.418 54.545 13.81 3.47 0.00 2.50
449 1008 1.825474 GCCTGACTAGACCTGCAGTTA 59.175 52.381 13.81 1.43 0.00 2.24
450 1009 0.610687 GCCTGACTAGACCTGCAGTT 59.389 55.000 13.81 0.00 0.00 3.16
451 1010 0.252012 AGCCTGACTAGACCTGCAGT 60.252 55.000 13.81 0.11 0.00 4.40
452 1011 0.459489 GAGCCTGACTAGACCTGCAG 59.541 60.000 6.78 6.78 0.00 4.41
453 1012 0.972983 GGAGCCTGACTAGACCTGCA 60.973 60.000 0.00 0.00 0.00 4.41
454 1013 1.819905 GGAGCCTGACTAGACCTGC 59.180 63.158 0.00 0.00 0.00 4.85
455 1014 0.394488 TCGGAGCCTGACTAGACCTG 60.394 60.000 0.00 0.00 0.00 4.00
456 1015 0.553819 ATCGGAGCCTGACTAGACCT 59.446 55.000 0.00 0.00 0.00 3.85
457 1016 0.671251 CATCGGAGCCTGACTAGACC 59.329 60.000 0.00 0.00 0.00 3.85
458 1017 0.671251 CCATCGGAGCCTGACTAGAC 59.329 60.000 0.00 0.00 0.00 2.59
459 1018 0.468214 CCCATCGGAGCCTGACTAGA 60.468 60.000 0.00 0.00 0.00 2.43
460 1019 1.467678 CCCCATCGGAGCCTGACTAG 61.468 65.000 0.00 0.00 0.00 2.57
461 1020 1.457643 CCCCATCGGAGCCTGACTA 60.458 63.158 0.00 0.00 0.00 2.59
462 1021 2.765807 CCCCATCGGAGCCTGACT 60.766 66.667 0.00 0.00 0.00 3.41
463 1022 3.866582 CCCCCATCGGAGCCTGAC 61.867 72.222 0.00 0.00 0.00 3.51
464 1023 4.414956 ACCCCCATCGGAGCCTGA 62.415 66.667 0.00 0.00 0.00 3.86
465 1024 4.181010 CACCCCCATCGGAGCCTG 62.181 72.222 0.00 0.00 0.00 4.85
472 1031 4.856801 CTTCCGCCACCCCCATCG 62.857 72.222 0.00 0.00 0.00 3.84
483 1042 2.676163 ATATTGGGACCCGCTTCCGC 62.676 60.000 5.91 0.00 36.38 5.54
484 1043 0.884704 CATATTGGGACCCGCTTCCG 60.885 60.000 5.91 0.00 36.38 4.30
485 1044 1.172812 GCATATTGGGACCCGCTTCC 61.173 60.000 5.91 0.00 34.52 3.46
486 1045 0.465460 TGCATATTGGGACCCGCTTC 60.465 55.000 5.91 0.00 0.00 3.86
487 1046 0.751643 GTGCATATTGGGACCCGCTT 60.752 55.000 5.91 0.00 0.00 4.68
488 1047 1.152963 GTGCATATTGGGACCCGCT 60.153 57.895 5.91 0.00 0.00 5.52
489 1048 1.453015 TGTGCATATTGGGACCCGC 60.453 57.895 5.91 2.95 0.00 6.13
490 1049 0.393673 TGTGTGCATATTGGGACCCG 60.394 55.000 5.91 0.00 0.00 5.28
491 1050 1.476488 GTTGTGTGCATATTGGGACCC 59.524 52.381 2.45 2.45 0.00 4.46
492 1051 2.166829 TGTTGTGTGCATATTGGGACC 58.833 47.619 0.00 0.00 0.00 4.46
493 1052 3.932545 TTGTTGTGTGCATATTGGGAC 57.067 42.857 0.00 0.00 0.00 4.46
494 1053 3.446873 GGATTGTTGTGTGCATATTGGGA 59.553 43.478 0.00 0.00 0.00 4.37
495 1054 3.195182 TGGATTGTTGTGTGCATATTGGG 59.805 43.478 0.00 0.00 0.00 4.12
496 1055 4.453177 TGGATTGTTGTGTGCATATTGG 57.547 40.909 0.00 0.00 0.00 3.16
497 1056 6.782298 TTTTGGATTGTTGTGTGCATATTG 57.218 33.333 0.00 0.00 0.00 1.90
498 1057 6.594937 GGATTTTGGATTGTTGTGTGCATATT 59.405 34.615 0.00 0.00 0.00 1.28
499 1058 6.108015 GGATTTTGGATTGTTGTGTGCATAT 58.892 36.000 0.00 0.00 0.00 1.78
500 1059 5.477510 GGATTTTGGATTGTTGTGTGCATA 58.522 37.500 0.00 0.00 0.00 3.14
501 1060 4.317488 GGATTTTGGATTGTTGTGTGCAT 58.683 39.130 0.00 0.00 0.00 3.96
513 1072 3.773560 TGAGGGTTTTCGGATTTTGGAT 58.226 40.909 0.00 0.00 0.00 3.41
518 1077 3.827722 TGACTTGAGGGTTTTCGGATTT 58.172 40.909 0.00 0.00 0.00 2.17
533 1092 7.964559 ACATTACAACGATTTGATGATGACTTG 59.035 33.333 0.00 0.00 36.48 3.16
544 1104 4.028383 GGCGATGACATTACAACGATTTG 58.972 43.478 0.00 0.00 38.07 2.32
570 1130 8.857098 TCTTATATCTGTAGCGTAATTTCCACT 58.143 33.333 0.00 0.00 0.00 4.00
582 1142 6.087522 AGCGTCGAATTCTTATATCTGTAGC 58.912 40.000 3.52 0.00 0.00 3.58
583 1143 7.298854 TGAGCGTCGAATTCTTATATCTGTAG 58.701 38.462 3.52 0.00 0.00 2.74
584 1144 7.198306 TGAGCGTCGAATTCTTATATCTGTA 57.802 36.000 3.52 0.00 0.00 2.74
586 1146 6.803807 TGATGAGCGTCGAATTCTTATATCTG 59.196 38.462 3.52 0.00 0.00 2.90
587 1147 6.914259 TGATGAGCGTCGAATTCTTATATCT 58.086 36.000 3.52 0.00 0.00 1.98
589 1149 6.088217 CGTTGATGAGCGTCGAATTCTTATAT 59.912 38.462 3.52 0.00 0.00 0.86
605 1165 2.009042 GCCAACCTCCTCGTTGATGAG 61.009 57.143 3.10 0.00 44.88 2.90
643 1203 6.699204 ACTTATGCTAACTCTCAATCACATCG 59.301 38.462 0.00 0.00 0.00 3.84
705 1267 8.273557 GCTGCTCAATAGAATTAAATTGCAATG 58.726 33.333 13.82 0.00 33.91 2.82
725 1287 5.915196 ACTAAAAGAAATGAAAACGCTGCTC 59.085 36.000 0.00 0.00 0.00 4.26
726 1288 5.831997 ACTAAAAGAAATGAAAACGCTGCT 58.168 33.333 0.00 0.00 0.00 4.24
748 1311 5.337554 GTGACAACCCAACAAGAGTTAAAC 58.662 41.667 0.00 0.00 35.85 2.01
754 1317 0.944386 CGGTGACAACCCAACAAGAG 59.056 55.000 0.00 0.00 44.42 2.85
772 1335 1.597195 TGCTTTAACACAGCACTGACG 59.403 47.619 4.31 0.00 42.49 4.35
780 1343 3.753272 ACATAGGCAGTGCTTTAACACAG 59.247 43.478 16.11 0.00 43.23 3.66
853 1424 4.141135 TGGTGAAACTGAAGGGGATTTGTA 60.141 41.667 0.00 0.00 36.74 2.41
914 1489 9.719279 ACGTTTCGTTCTTGTAATTTATTTTGA 57.281 25.926 0.00 0.00 36.35 2.69
935 1517 4.067972 TCCTTGTGCTCTTCTTACGTTT 57.932 40.909 0.00 0.00 0.00 3.60
938 1520 4.932200 AGAAATCCTTGTGCTCTTCTTACG 59.068 41.667 0.00 0.00 0.00 3.18
950 1532 3.525862 AGAGTCTCCCAGAAATCCTTGT 58.474 45.455 0.00 0.00 0.00 3.16
954 1536 4.400529 GAGAAGAGTCTCCCAGAAATCC 57.599 50.000 0.00 0.00 44.06 3.01
992 1574 3.338250 GTGTGGCCATGGAGGGGA 61.338 66.667 18.40 0.00 38.09 4.81
1008 1590 2.283532 AGGAGAGCGTGCTGGAGT 60.284 61.111 0.00 0.00 0.00 3.85
1059 1641 2.301738 GGACCTTGGGTGGAGGAGG 61.302 68.421 0.00 0.00 35.25 4.30
1075 1657 2.447429 ACCTCGGAGATATCTTCCTGGA 59.553 50.000 18.73 5.69 33.89 3.86
1101 1683 1.152368 CATGGAGAAGGCCCCATCC 59.848 63.158 8.20 9.23 40.95 3.51
1428 2015 4.245660 TCAACCAAGCTAGTCATCGAAAG 58.754 43.478 0.00 0.00 0.00 2.62
1430 2017 3.953712 TCAACCAAGCTAGTCATCGAA 57.046 42.857 0.00 0.00 0.00 3.71
1459 2046 6.042638 TCTGAACCTTATCCAGTTTCTCTG 57.957 41.667 0.00 0.00 43.27 3.35
1484 2071 8.073467 TGTCTGTTGTACCAGAATCATATGTA 57.927 34.615 1.90 0.00 42.81 2.29
1504 2091 6.019961 GTCGATTTCAGAGATTAAGCTGTCTG 60.020 42.308 0.00 0.36 37.76 3.51
1612 2203 4.091549 CAAGTAACAGTACTAGGTGGGGA 58.908 47.826 0.00 0.00 39.79 4.81
1613 2204 3.197116 CCAAGTAACAGTACTAGGTGGGG 59.803 52.174 0.00 0.00 39.79 4.96
1614 2205 3.836562 ACCAAGTAACAGTACTAGGTGGG 59.163 47.826 0.00 0.00 39.79 4.61
1615 2206 6.786967 ATACCAAGTAACAGTACTAGGTGG 57.213 41.667 0.00 0.54 39.79 4.61
1750 2341 5.621228 CACAGCGAACTAAATCAAAGTTGAC 59.379 40.000 0.00 0.00 40.49 3.18
1772 2363 2.668212 TGCCTGTTAGCACCGCAC 60.668 61.111 0.00 0.00 38.00 5.34
1784 2375 0.952280 CTAATCCATGCTGCTGCCTG 59.048 55.000 13.47 13.11 38.71 4.85
1808 2399 6.721571 TCTAAATCCAAACTCTTAGTTGCG 57.278 37.500 0.00 0.00 38.66 4.85
1865 2456 6.125029 ACACTATGGATCAAAATTGGGAGAG 58.875 40.000 0.00 0.00 0.00 3.20
1869 2460 7.645058 AGTAACACTATGGATCAAAATTGGG 57.355 36.000 0.00 0.00 0.00 4.12
1979 2570 1.401552 GCAAAGAATATGAGCGCACCA 59.598 47.619 11.47 7.71 0.00 4.17
2042 2633 7.170151 GTGGAAACCATATTACCAAACAACAAC 59.830 37.037 0.00 0.00 35.28 3.32
2046 2637 5.047943 CCGTGGAAACCATATTACCAAACAA 60.048 40.000 0.00 0.00 35.28 2.83
2111 2881 9.280174 CTAAAACTAACAGACATTTACCCTCAA 57.720 33.333 0.00 0.00 0.00 3.02
2450 3225 2.761767 GGAGGTAGTTCTTCTGAGACCC 59.238 54.545 0.00 0.00 0.00 4.46
2477 3252 1.300697 GGCAAGACCGAACACGAGT 60.301 57.895 0.00 0.00 0.00 4.18
2486 3261 5.235186 CAGATTTTCTAGTATGGCAAGACCG 59.765 44.000 0.00 0.00 43.94 4.79
2528 3303 1.191535 TTGCATAGCTACGGTCCACT 58.808 50.000 0.00 0.00 0.00 4.00
2595 3370 2.016905 ACTTCTAGCTGGACAGTGGT 57.983 50.000 0.00 0.00 0.00 4.16
2653 3428 6.707290 TGTAATATGGAACTAAGTGCACAGT 58.293 36.000 21.04 12.01 0.00 3.55
2665 3440 6.715347 AGGGCAGAAAATGTAATATGGAAC 57.285 37.500 0.00 0.00 0.00 3.62
2672 3447 6.603940 TGCTTAAAGGGCAGAAAATGTAAT 57.396 33.333 0.00 0.00 34.56 1.89
2801 3576 0.962489 ACTCTGTTCTGAGACGGTGG 59.038 55.000 12.35 0.00 37.50 4.61
2808 3583 6.857777 AAATCAAGACAACTCTGTTCTGAG 57.142 37.500 5.41 5.41 35.30 3.35
2839 3615 5.734720 CCCATGTAGAGCTTGAGAAGTTTA 58.265 41.667 0.00 0.00 0.00 2.01
2863 3639 0.468585 ATGTGCCATGCCCATGTAGG 60.469 55.000 7.42 0.00 37.11 3.18
2864 3640 1.338973 GAATGTGCCATGCCCATGTAG 59.661 52.381 7.42 0.00 37.11 2.74
2865 3641 1.401761 GAATGTGCCATGCCCATGTA 58.598 50.000 7.42 0.00 37.11 2.29
2866 3642 1.669049 CGAATGTGCCATGCCCATGT 61.669 55.000 7.42 0.00 37.11 3.21
2867 3643 1.066752 CGAATGTGCCATGCCCATG 59.933 57.895 1.28 1.28 38.51 3.66
2868 3644 2.788640 GCGAATGTGCCATGCCCAT 61.789 57.895 0.00 0.00 0.00 4.00
2869 3645 3.451004 GCGAATGTGCCATGCCCA 61.451 61.111 0.00 0.00 0.00 5.36
3064 3842 6.008331 AGCATGTACCATGATGATTTAGCAT 58.992 36.000 8.34 0.00 35.35 3.79
3065 3843 5.239963 CAGCATGTACCATGATGATTTAGCA 59.760 40.000 15.35 0.00 37.60 3.49
3079 3857 1.089920 CCTGAACTGCAGCATGTACC 58.910 55.000 15.27 0.00 43.50 3.34
3216 3994 9.423061 GGCAAATGAAATACAGACAGTAAAAAT 57.577 29.630 0.00 0.00 36.05 1.82
3220 3998 6.007076 TGGGCAAATGAAATACAGACAGTAA 58.993 36.000 0.00 0.00 36.05 2.24
3429 4214 0.933097 CCGACTTCATTCGCTGATGG 59.067 55.000 0.00 0.00 37.70 3.51
3486 4271 5.121380 AGCCAAATCATCTACATGACCTT 57.879 39.130 0.00 0.00 42.05 3.50
3578 4363 4.072131 TCCCAAGAAAAACCTCAATCTCG 58.928 43.478 0.00 0.00 0.00 4.04
3584 4369 3.295973 CCAACTCCCAAGAAAAACCTCA 58.704 45.455 0.00 0.00 0.00 3.86
3621 4406 7.123997 TGCATACATAAGGGAACATTGTGATTT 59.876 33.333 0.00 0.00 0.00 2.17
3622 4407 6.606796 TGCATACATAAGGGAACATTGTGATT 59.393 34.615 0.00 0.00 0.00 2.57
3638 4423 4.235079 AGGTGCTTTTCCTGCATACATA 57.765 40.909 0.00 0.00 42.69 2.29
3731 4516 0.169009 GCGGCAAAACTGATCCTGAC 59.831 55.000 0.00 0.00 0.00 3.51
3737 4522 0.238289 CGAACAGCGGCAAAACTGAT 59.762 50.000 1.45 0.00 37.35 2.90
3758 4543 1.389555 GAGATAAAAACTGGCCCCCG 58.610 55.000 0.00 0.00 0.00 5.73
3862 4652 3.126831 CCTTCGATCTGTATCTGCCAAC 58.873 50.000 0.00 0.00 0.00 3.77
3949 4739 7.340999 ACATATACAAAACCCTGGGTGTATTTC 59.659 37.037 24.36 0.00 35.34 2.17
3999 4789 2.315901 GTACAACATGTTCAAAGGCGC 58.684 47.619 8.48 0.00 0.00 6.53
4020 4822 4.979197 CCTAGTTCAGTAATCGAGCATCAC 59.021 45.833 0.00 0.00 33.17 3.06
4077 4887 1.067846 GGCATCTACACACAGTCGACA 60.068 52.381 19.50 0.00 0.00 4.35
4127 4937 3.521727 AGTCACACCAGTAATTCCTCCT 58.478 45.455 0.00 0.00 0.00 3.69
4190 5000 2.036217 TGATTCAAAAACCCTGCAGCTG 59.964 45.455 10.11 10.11 0.00 4.24
4211 5022 2.661054 TGCAAGCCATGAATGCAGT 58.339 47.368 13.67 0.00 44.52 4.40
4223 5034 5.284660 CACGAGTAGAATCAAAATTGCAAGC 59.715 40.000 4.94 0.00 0.00 4.01
4315 5126 1.742761 ATGTGTCTGAATTGAGGGCG 58.257 50.000 0.00 0.00 0.00 6.13
4399 5210 3.688185 AGTTAGTACTTCACTCGATCGCA 59.312 43.478 11.09 0.00 38.80 5.10
4401 5212 4.550447 CGGAGTTAGTACTTCACTCGATCG 60.550 50.000 20.58 9.36 38.28 3.69
4419 5230 5.872977 AGGGACTAATAAATCAGGACGGAGT 60.873 44.000 0.00 0.00 41.75 3.85
4438 5249 7.937649 AGTTTGACACAAAATACTAAAGGGAC 58.062 34.615 0.00 0.00 0.00 4.46
4441 5252 9.796120 TCAAAGTTTGACACAAAATACTAAAGG 57.204 29.630 14.35 0.00 34.08 3.11
4504 5315 7.696992 ACGAATCCAACCATATACTTTTTGT 57.303 32.000 0.00 0.00 0.00 2.83
4630 5441 3.891049 ACTGCCTCCATTCTGGTTTATC 58.109 45.455 0.00 0.00 39.03 1.75
4636 5447 2.636830 CTGTTACTGCCTCCATTCTGG 58.363 52.381 0.00 0.00 39.43 3.86
4640 5451 1.668826 TCCCTGTTACTGCCTCCATT 58.331 50.000 0.00 0.00 0.00 3.16
4642 5453 1.668826 AATCCCTGTTACTGCCTCCA 58.331 50.000 0.00 0.00 0.00 3.86
4647 5458 5.001232 TCACTGTAAAATCCCTGTTACTGC 58.999 41.667 0.00 0.00 34.36 4.40
4648 5459 6.036083 CGATCACTGTAAAATCCCTGTTACTG 59.964 42.308 0.00 0.00 36.07 2.74
4656 5467 4.873827 TGTTAGCGATCACTGTAAAATCCC 59.126 41.667 0.00 0.00 0.00 3.85
4662 5473 3.616821 GCACATGTTAGCGATCACTGTAA 59.383 43.478 0.00 0.00 0.00 2.41
4663 5474 3.119137 AGCACATGTTAGCGATCACTGTA 60.119 43.478 0.00 0.00 35.48 2.74
4665 5476 2.274437 AGCACATGTTAGCGATCACTG 58.726 47.619 0.00 0.00 35.48 3.66
4666 5477 2.680312 AGCACATGTTAGCGATCACT 57.320 45.000 0.00 0.00 35.48 3.41
4667 5478 2.672874 TGAAGCACATGTTAGCGATCAC 59.327 45.455 12.48 0.00 35.48 3.06
4668 5479 2.971307 TGAAGCACATGTTAGCGATCA 58.029 42.857 12.48 12.48 35.48 2.92
4669 5480 3.372206 AGTTGAAGCACATGTTAGCGATC 59.628 43.478 0.00 3.05 35.48 3.69
4670 5481 3.338249 AGTTGAAGCACATGTTAGCGAT 58.662 40.909 0.00 0.00 35.48 4.58
4671 5482 2.736721 GAGTTGAAGCACATGTTAGCGA 59.263 45.455 0.00 0.00 35.48 4.93
4672 5483 2.472886 CGAGTTGAAGCACATGTTAGCG 60.473 50.000 0.00 0.00 35.48 4.26
4673 5484 2.736721 TCGAGTTGAAGCACATGTTAGC 59.263 45.455 0.00 0.00 0.00 3.09
4689 5500 1.140589 CGAGGCATTGAGCTCGAGT 59.859 57.895 15.13 0.23 42.50 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.