Multiple sequence alignment - TraesCS1B01G333400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G333400 chr1B 100.000 2140 0 0 1178 3317 560015599 560017738 0.000000e+00 3952.0
1 TraesCS1B01G333400 chr1B 100.000 1035 0 0 1 1035 560014422 560015456 0.000000e+00 1912.0
2 TraesCS1B01G333400 chr1B 77.844 334 48 17 1739 2068 553833026 553832715 2.030000e-42 183.0
3 TraesCS1B01G333400 chr1A 90.876 1666 106 22 1178 2813 511446345 511447994 0.000000e+00 2193.0
4 TraesCS1B01G333400 chr1A 93.359 512 23 6 2809 3317 511447938 511448441 0.000000e+00 747.0
5 TraesCS1B01G333400 chr1A 82.967 546 85 4 329 867 511413601 511414145 1.380000e-133 486.0
6 TraesCS1B01G333400 chr1D 93.328 1259 52 17 1178 2408 414563819 414565073 0.000000e+00 1831.0
7 TraesCS1B01G333400 chr1D 94.387 481 26 1 2837 3317 414565426 414565905 0.000000e+00 737.0
8 TraesCS1B01G333400 chr1D 92.424 330 21 3 2463 2790 414565093 414565420 5.010000e-128 468.0
9 TraesCS1B01G333400 chr1D 86.765 136 18 0 316 451 414563254 414563389 5.730000e-33 152.0
10 TraesCS1B01G333400 chr1D 96.154 52 2 0 791 842 414563460 414563511 5.900000e-13 86.1
11 TraesCS1B01G333400 chr7B 78.344 1473 165 64 1317 2722 732708451 732709836 0.000000e+00 811.0
12 TraesCS1B01G333400 chr7B 81.381 478 52 18 2847 3317 732710910 732711357 4.070000e-94 355.0
13 TraesCS1B01G333400 chr7B 90.262 267 26 0 1327 1593 566484202 566483936 1.890000e-92 350.0
14 TraesCS1B01G333400 chr7B 84.524 336 29 11 2936 3270 732636183 732635870 8.940000e-81 311.0
15 TraesCS1B01G333400 chr7D 81.807 841 68 36 1912 2721 629782090 629781304 7.810000e-176 627.0
16 TraesCS1B01G333400 chr7D 84.167 480 54 18 2847 3317 629774834 629774368 2.350000e-121 446.0
17 TraesCS1B01G333400 chr7D 84.000 450 50 11 2847 3292 629869647 629870078 2.380000e-111 412.0
18 TraesCS1B01G333400 chr7D 83.493 418 28 16 1909 2304 629867791 629868189 5.260000e-93 351.0
19 TraesCS1B01G333400 chr7D 79.385 553 64 30 1317 1843 629867239 629867767 8.810000e-91 344.0
20 TraesCS1B01G333400 chr7D 87.421 159 10 4 2847 3005 629869059 629869207 1.220000e-39 174.0
21 TraesCS1B01G333400 chr7D 91.566 83 3 4 2400 2479 629868708 629868789 9.730000e-21 111.0
22 TraesCS1B01G333400 chr7D 83.696 92 12 2 2621 2709 629868367 629868458 2.120000e-12 84.2
23 TraesCS1B01G333400 chr7A 79.230 857 69 41 1909 2722 726000718 726001508 2.300000e-136 496.0
24 TraesCS1B01G333400 chr7A 80.504 595 68 25 1317 1879 726000142 726000720 2.380000e-111 412.0
25 TraesCS1B01G333400 chr7A 79.089 483 44 26 2847 3317 726002621 726003058 2.520000e-71 279.0
26 TraesCS1B01G333400 chr7A 79.430 316 24 16 2101 2401 724186565 724186276 5.650000e-43 185.0
27 TraesCS1B01G333400 chr7A 87.500 152 13 1 1497 1642 724187070 724186919 1.580000e-38 171.0
28 TraesCS1B01G333400 chr7A 82.639 144 13 7 2249 2381 726001571 726001713 2.090000e-22 117.0
29 TraesCS1B01G333400 chr7A 93.548 62 4 0 2944 3005 726002089 726002150 3.520000e-15 93.5
30 TraesCS1B01G333400 chr4B 78.170 765 94 36 1482 2199 298155881 298155143 1.420000e-113 420.0
31 TraesCS1B01G333400 chr4B 88.789 223 24 1 1305 1527 496240866 496241087 4.220000e-69 272.0
32 TraesCS1B01G333400 chr2A 77.236 492 61 23 1739 2199 95076078 95075607 1.190000e-59 241.0
33 TraesCS1B01G333400 chr2A 76.829 492 63 26 1739 2199 687813833 687813362 2.570000e-56 230.0
34 TraesCS1B01G333400 chr5A 84.332 217 27 6 2016 2229 696290600 696290388 4.340000e-49 206.0
35 TraesCS1B01G333400 chr5A 77.313 335 49 14 1739 2068 533745923 533746235 4.400000e-39 172.0
36 TraesCS1B01G333400 chr5A 77.015 335 50 15 1739 2068 380842666 380842354 2.050000e-37 167.0
37 TraesCS1B01G333400 chr3B 78.914 313 25 22 2101 2398 595619352 595619638 1.220000e-39 174.0
38 TraesCS1B01G333400 chr3B 85.455 165 23 1 1478 1642 595621870 595622033 1.580000e-38 171.0
39 TraesCS1B01G333400 chr3B 87.671 146 16 1 1497 1642 595619024 595619167 5.690000e-38 169.0
40 TraesCS1B01G333400 chr3B 78.413 315 23 20 2101 2398 595622212 595622498 2.650000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G333400 chr1B 560014422 560017738 3316 False 2932.000000 3952 100.000000 1 3317 2 chr1B.!!$F1 3316
1 TraesCS1B01G333400 chr1A 511446345 511448441 2096 False 1470.000000 2193 92.117500 1178 3317 2 chr1A.!!$F2 2139
2 TraesCS1B01G333400 chr1A 511413601 511414145 544 False 486.000000 486 82.967000 329 867 1 chr1A.!!$F1 538
3 TraesCS1B01G333400 chr1D 414563254 414565905 2651 False 654.820000 1831 92.611600 316 3317 5 chr1D.!!$F1 3001
4 TraesCS1B01G333400 chr7B 732708451 732711357 2906 False 583.000000 811 79.862500 1317 3317 2 chr7B.!!$F1 2000
5 TraesCS1B01G333400 chr7D 629781304 629782090 786 True 627.000000 627 81.807000 1912 2721 1 chr7D.!!$R2 809
6 TraesCS1B01G333400 chr7D 629867239 629870078 2839 False 246.033333 412 84.926833 1317 3292 6 chr7D.!!$F1 1975
7 TraesCS1B01G333400 chr7A 726000142 726003058 2916 False 279.500000 496 83.002000 1317 3317 5 chr7A.!!$F1 2000
8 TraesCS1B01G333400 chr4B 298155143 298155881 738 True 420.000000 420 78.170000 1482 2199 1 chr4B.!!$R1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 601 0.035152 TCATCGAAGCAATGCCACCT 60.035 50.0 0.0 0.0 0.0 4.0 F
1010 1190 0.104671 CCCGCCTGCAAAAATATGGG 59.895 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 1894 1.301244 CGATCGATGGGCCAAGGAG 60.301 63.158 11.89 2.03 0.0 3.69 R
2824 4022 0.393944 ATCGAGTACACGCAGAGGGA 60.394 55.000 7.90 0.00 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.849085 AATTTGGAACTATGTTACATGGCA 57.151 33.333 8.26 0.00 0.00 4.92
31 32 7.422465 AATTTGGAACTATGTTACATGGCAT 57.578 32.000 8.26 0.00 0.00 4.40
32 33 6.849085 TTTGGAACTATGTTACATGGCATT 57.151 33.333 8.26 0.00 0.00 3.56
33 34 6.449635 TTGGAACTATGTTACATGGCATTC 57.550 37.500 8.26 5.90 0.00 2.67
34 35 5.754782 TGGAACTATGTTACATGGCATTCT 58.245 37.500 8.26 0.00 0.00 2.40
35 36 6.894682 TGGAACTATGTTACATGGCATTCTA 58.105 36.000 8.26 1.57 0.00 2.10
36 37 7.342581 TGGAACTATGTTACATGGCATTCTAA 58.657 34.615 8.26 0.00 0.00 2.10
37 38 7.831690 TGGAACTATGTTACATGGCATTCTAAA 59.168 33.333 8.26 0.00 0.00 1.85
38 39 8.129211 GGAACTATGTTACATGGCATTCTAAAC 58.871 37.037 8.26 0.78 0.00 2.01
39 40 8.574251 AACTATGTTACATGGCATTCTAAACA 57.426 30.769 8.26 13.02 0.00 2.83
40 41 7.985476 ACTATGTTACATGGCATTCTAAACAC 58.015 34.615 8.26 0.00 0.00 3.32
41 42 5.637006 TGTTACATGGCATTCTAAACACC 57.363 39.130 0.00 0.00 0.00 4.16
42 43 4.461081 TGTTACATGGCATTCTAAACACCC 59.539 41.667 0.00 0.00 0.00 4.61
43 44 2.456577 ACATGGCATTCTAAACACCCC 58.543 47.619 0.00 0.00 0.00 4.95
44 45 1.756538 CATGGCATTCTAAACACCCCC 59.243 52.381 0.00 0.00 0.00 5.40
45 46 1.080638 TGGCATTCTAAACACCCCCT 58.919 50.000 0.00 0.00 0.00 4.79
46 47 1.005450 TGGCATTCTAAACACCCCCTC 59.995 52.381 0.00 0.00 0.00 4.30
47 48 1.685180 GGCATTCTAAACACCCCCTCC 60.685 57.143 0.00 0.00 0.00 4.30
48 49 1.685180 GCATTCTAAACACCCCCTCCC 60.685 57.143 0.00 0.00 0.00 4.30
49 50 1.923148 CATTCTAAACACCCCCTCCCT 59.077 52.381 0.00 0.00 0.00 4.20
50 51 2.143231 TTCTAAACACCCCCTCCCTT 57.857 50.000 0.00 0.00 0.00 3.95
51 52 2.143231 TCTAAACACCCCCTCCCTTT 57.857 50.000 0.00 0.00 0.00 3.11
52 53 3.294806 TCTAAACACCCCCTCCCTTTA 57.705 47.619 0.00 0.00 0.00 1.85
53 54 3.187112 TCTAAACACCCCCTCCCTTTAG 58.813 50.000 0.00 0.00 0.00 1.85
54 55 1.842699 AAACACCCCCTCCCTTTAGT 58.157 50.000 0.00 0.00 0.00 2.24
55 56 1.842699 AACACCCCCTCCCTTTAGTT 58.157 50.000 0.00 0.00 0.00 2.24
56 57 1.842699 ACACCCCCTCCCTTTAGTTT 58.157 50.000 0.00 0.00 0.00 2.66
57 58 2.149556 ACACCCCCTCCCTTTAGTTTT 58.850 47.619 0.00 0.00 0.00 2.43
58 59 2.158370 ACACCCCCTCCCTTTAGTTTTG 60.158 50.000 0.00 0.00 0.00 2.44
59 60 2.149556 ACCCCCTCCCTTTAGTTTTGT 58.850 47.619 0.00 0.00 0.00 2.83
60 61 2.520980 ACCCCCTCCCTTTAGTTTTGTT 59.479 45.455 0.00 0.00 0.00 2.83
61 62 3.728456 ACCCCCTCCCTTTAGTTTTGTTA 59.272 43.478 0.00 0.00 0.00 2.41
62 63 4.358918 ACCCCCTCCCTTTAGTTTTGTTAT 59.641 41.667 0.00 0.00 0.00 1.89
63 64 5.162804 ACCCCCTCCCTTTAGTTTTGTTATT 60.163 40.000 0.00 0.00 0.00 1.40
64 65 5.421056 CCCCCTCCCTTTAGTTTTGTTATTC 59.579 44.000 0.00 0.00 0.00 1.75
65 66 6.253758 CCCCTCCCTTTAGTTTTGTTATTCT 58.746 40.000 0.00 0.00 0.00 2.40
66 67 7.407729 CCCCTCCCTTTAGTTTTGTTATTCTA 58.592 38.462 0.00 0.00 0.00 2.10
67 68 7.338703 CCCCTCCCTTTAGTTTTGTTATTCTAC 59.661 40.741 0.00 0.00 0.00 2.59
68 69 7.886446 CCCTCCCTTTAGTTTTGTTATTCTACA 59.114 37.037 0.00 0.00 0.00 2.74
69 70 9.462606 CCTCCCTTTAGTTTTGTTATTCTACAT 57.537 33.333 0.00 0.00 0.00 2.29
117 118 8.798748 ATCAATTTACTATTCGTCCTAAGTCG 57.201 34.615 0.00 0.00 0.00 4.18
118 119 7.765307 TCAATTTACTATTCGTCCTAAGTCGT 58.235 34.615 0.00 0.00 0.00 4.34
119 120 8.246180 TCAATTTACTATTCGTCCTAAGTCGTT 58.754 33.333 0.00 0.00 0.00 3.85
120 121 8.866956 CAATTTACTATTCGTCCTAAGTCGTTT 58.133 33.333 0.00 0.00 0.00 3.60
121 122 8.992835 ATTTACTATTCGTCCTAAGTCGTTTT 57.007 30.769 0.00 0.00 0.00 2.43
122 123 8.816640 TTTACTATTCGTCCTAAGTCGTTTTT 57.183 30.769 0.00 0.00 0.00 1.94
123 124 6.701432 ACTATTCGTCCTAAGTCGTTTTTG 57.299 37.500 0.00 0.00 0.00 2.44
124 125 6.218746 ACTATTCGTCCTAAGTCGTTTTTGT 58.781 36.000 0.00 0.00 0.00 2.83
125 126 4.782252 TTCGTCCTAAGTCGTTTTTGTG 57.218 40.909 0.00 0.00 0.00 3.33
126 127 3.125316 TCGTCCTAAGTCGTTTTTGTGG 58.875 45.455 0.00 0.00 0.00 4.17
127 128 2.222445 CGTCCTAAGTCGTTTTTGTGGG 59.778 50.000 0.00 0.00 0.00 4.61
128 129 2.031420 GTCCTAAGTCGTTTTTGTGGGC 60.031 50.000 0.00 0.00 0.00 5.36
129 130 1.950909 CCTAAGTCGTTTTTGTGGGCA 59.049 47.619 0.00 0.00 0.00 5.36
130 131 2.556622 CCTAAGTCGTTTTTGTGGGCAT 59.443 45.455 0.00 0.00 0.00 4.40
131 132 3.005367 CCTAAGTCGTTTTTGTGGGCATT 59.995 43.478 0.00 0.00 0.00 3.56
132 133 3.535280 AAGTCGTTTTTGTGGGCATTT 57.465 38.095 0.00 0.00 0.00 2.32
133 134 3.535280 AGTCGTTTTTGTGGGCATTTT 57.465 38.095 0.00 0.00 0.00 1.82
134 135 3.867857 AGTCGTTTTTGTGGGCATTTTT 58.132 36.364 0.00 0.00 0.00 1.94
158 159 5.588568 GCCTGATGCAGAATATATATCGC 57.411 43.478 0.00 0.79 40.77 4.58
159 160 5.052481 GCCTGATGCAGAATATATATCGCA 58.948 41.667 13.66 13.66 40.77 5.10
160 161 5.525012 GCCTGATGCAGAATATATATCGCAA 59.475 40.000 14.72 3.64 40.77 4.85
161 162 6.037500 GCCTGATGCAGAATATATATCGCAAA 59.962 38.462 14.72 8.37 40.77 3.68
162 163 7.255035 GCCTGATGCAGAATATATATCGCAAAT 60.255 37.037 14.72 4.10 40.77 2.32
163 164 8.281194 CCTGATGCAGAATATATATCGCAAATC 58.719 37.037 14.72 10.89 32.44 2.17
164 165 7.844482 TGATGCAGAATATATATCGCAAATCG 58.156 34.615 14.72 0.00 40.15 3.34
165 166 7.492344 TGATGCAGAATATATATCGCAAATCGT 59.508 33.333 14.72 3.04 39.67 3.73
166 167 7.221828 TGCAGAATATATATCGCAAATCGTC 57.778 36.000 10.42 0.00 39.67 4.20
167 168 7.035612 TGCAGAATATATATCGCAAATCGTCT 58.964 34.615 10.42 0.00 39.67 4.18
168 169 7.545615 TGCAGAATATATATCGCAAATCGTCTT 59.454 33.333 10.42 0.00 39.67 3.01
169 170 7.843204 GCAGAATATATATCGCAAATCGTCTTG 59.157 37.037 0.00 0.00 39.67 3.02
170 171 7.843204 CAGAATATATATCGCAAATCGTCTTGC 59.157 37.037 12.33 12.33 46.70 4.01
190 191 6.834959 TTGCATTGCAAATTTAAAACTCGA 57.165 29.167 21.24 0.00 45.96 4.04
191 192 6.450845 TGCATTGCAAATTTAAAACTCGAG 57.549 33.333 11.84 11.84 34.76 4.04
192 193 6.212235 TGCATTGCAAATTTAAAACTCGAGA 58.788 32.000 21.68 0.00 34.76 4.04
193 194 6.867816 TGCATTGCAAATTTAAAACTCGAGAT 59.132 30.769 21.68 3.75 34.76 2.75
194 195 7.384660 TGCATTGCAAATTTAAAACTCGAGATT 59.615 29.630 21.68 11.42 34.76 2.40
195 196 8.859156 GCATTGCAAATTTAAAACTCGAGATTA 58.141 29.630 21.68 14.58 0.00 1.75
207 208 5.803020 ACTCGAGATTAAAATGTTCCTGC 57.197 39.130 21.68 0.00 0.00 4.85
208 209 5.491982 ACTCGAGATTAAAATGTTCCTGCT 58.508 37.500 21.68 0.00 0.00 4.24
209 210 6.640518 ACTCGAGATTAAAATGTTCCTGCTA 58.359 36.000 21.68 0.00 0.00 3.49
210 211 6.535508 ACTCGAGATTAAAATGTTCCTGCTAC 59.464 38.462 21.68 0.00 0.00 3.58
211 212 6.403049 TCGAGATTAAAATGTTCCTGCTACA 58.597 36.000 0.00 0.00 0.00 2.74
212 213 7.047891 TCGAGATTAAAATGTTCCTGCTACAT 58.952 34.615 0.00 0.00 37.82 2.29
213 214 7.552687 TCGAGATTAAAATGTTCCTGCTACATT 59.447 33.333 0.00 0.00 45.49 2.71
221 222 6.743575 ATGTTCCTGCTACATTTAGTTCAC 57.256 37.500 0.00 0.00 32.48 3.18
222 223 5.616270 TGTTCCTGCTACATTTAGTTCACA 58.384 37.500 0.00 0.00 0.00 3.58
223 224 5.468746 TGTTCCTGCTACATTTAGTTCACAC 59.531 40.000 0.00 0.00 0.00 3.82
224 225 5.222079 TCCTGCTACATTTAGTTCACACA 57.778 39.130 0.00 0.00 0.00 3.72
225 226 4.994852 TCCTGCTACATTTAGTTCACACAC 59.005 41.667 0.00 0.00 0.00 3.82
226 227 4.754618 CCTGCTACATTTAGTTCACACACA 59.245 41.667 0.00 0.00 0.00 3.72
227 228 5.334105 CCTGCTACATTTAGTTCACACACAC 60.334 44.000 0.00 0.00 0.00 3.82
228 229 5.119694 TGCTACATTTAGTTCACACACACA 58.880 37.500 0.00 0.00 0.00 3.72
229 230 5.007234 TGCTACATTTAGTTCACACACACAC 59.993 40.000 0.00 0.00 0.00 3.82
230 231 4.530094 ACATTTAGTTCACACACACACG 57.470 40.909 0.00 0.00 0.00 4.49
231 232 3.242608 ACATTTAGTTCACACACACACGC 60.243 43.478 0.00 0.00 0.00 5.34
232 233 0.924777 TTAGTTCACACACACACGCG 59.075 50.000 3.53 3.53 0.00 6.01
233 234 1.484227 TAGTTCACACACACACGCGC 61.484 55.000 5.73 0.00 0.00 6.86
234 235 2.815647 TTCACACACACACGCGCA 60.816 55.556 5.73 0.00 0.00 6.09
235 236 3.089729 TTCACACACACACGCGCAC 62.090 57.895 5.73 0.00 0.00 5.34
236 237 3.858989 CACACACACACGCGCACA 61.859 61.111 5.73 0.00 0.00 4.57
237 238 2.894879 ACACACACACGCGCACAT 60.895 55.556 5.73 0.00 0.00 3.21
238 239 1.592939 ACACACACACGCGCACATA 60.593 52.632 5.73 0.00 0.00 2.29
239 240 1.130411 CACACACACGCGCACATAG 59.870 57.895 5.73 0.00 0.00 2.23
240 241 1.300620 ACACACACGCGCACATAGT 60.301 52.632 5.73 0.00 0.00 2.12
241 242 0.878523 ACACACACGCGCACATAGTT 60.879 50.000 5.73 0.00 0.00 2.24
242 243 0.179250 CACACACGCGCACATAGTTC 60.179 55.000 5.73 0.00 0.00 3.01
243 244 0.598942 ACACACGCGCACATAGTTCA 60.599 50.000 5.73 0.00 0.00 3.18
244 245 0.721154 CACACGCGCACATAGTTCAT 59.279 50.000 5.73 0.00 0.00 2.57
245 246 0.999406 ACACGCGCACATAGTTCATC 59.001 50.000 5.73 0.00 0.00 2.92
246 247 0.998669 CACGCGCACATAGTTCATCA 59.001 50.000 5.73 0.00 0.00 3.07
247 248 0.999406 ACGCGCACATAGTTCATCAC 59.001 50.000 5.73 0.00 0.00 3.06
248 249 0.998669 CGCGCACATAGTTCATCACA 59.001 50.000 8.75 0.00 0.00 3.58
249 250 1.267038 CGCGCACATAGTTCATCACAC 60.267 52.381 8.75 0.00 0.00 3.82
250 251 1.731709 GCGCACATAGTTCATCACACA 59.268 47.619 0.30 0.00 0.00 3.72
251 252 2.474526 GCGCACATAGTTCATCACACAC 60.475 50.000 0.30 0.00 0.00 3.82
252 253 2.736192 CGCACATAGTTCATCACACACA 59.264 45.455 0.00 0.00 0.00 3.72
253 254 3.423515 CGCACATAGTTCATCACACACAC 60.424 47.826 0.00 0.00 0.00 3.82
254 255 3.498018 GCACATAGTTCATCACACACACA 59.502 43.478 0.00 0.00 0.00 3.72
255 256 4.611355 GCACATAGTTCATCACACACACAC 60.611 45.833 0.00 0.00 0.00 3.82
256 257 4.511082 CACATAGTTCATCACACACACACA 59.489 41.667 0.00 0.00 0.00 3.72
257 258 4.511454 ACATAGTTCATCACACACACACAC 59.489 41.667 0.00 0.00 0.00 3.82
258 259 2.984562 AGTTCATCACACACACACACA 58.015 42.857 0.00 0.00 0.00 3.72
259 260 2.677836 AGTTCATCACACACACACACAC 59.322 45.455 0.00 0.00 0.00 3.82
260 261 2.393271 TCATCACACACACACACACA 57.607 45.000 0.00 0.00 0.00 3.72
261 262 2.006169 TCATCACACACACACACACAC 58.994 47.619 0.00 0.00 0.00 3.82
262 263 1.736681 CATCACACACACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
263 264 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
264 265 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
265 266 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
266 267 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
267 268 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
268 269 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
269 270 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
270 271 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
271 272 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
272 273 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
273 274 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
274 275 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
275 276 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
276 277 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
277 278 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
278 279 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
279 280 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
280 281 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
281 282 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
282 283 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
283 284 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
284 285 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
285 286 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
286 287 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
287 288 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
288 289 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
289 290 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
290 291 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
291 292 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
292 293 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
293 294 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
294 295 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
295 296 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
296 297 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
297 298 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
298 299 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
299 300 2.289133 ACACACACACACACACACACTA 60.289 45.455 0.00 0.00 0.00 2.74
300 301 2.093625 CACACACACACACACACACTAC 59.906 50.000 0.00 0.00 0.00 2.73
301 302 2.028476 ACACACACACACACACACTACT 60.028 45.455 0.00 0.00 0.00 2.57
302 303 3.193903 ACACACACACACACACACTACTA 59.806 43.478 0.00 0.00 0.00 1.82
303 304 4.142026 ACACACACACACACACACTACTAT 60.142 41.667 0.00 0.00 0.00 2.12
304 305 4.209080 CACACACACACACACACTACTATG 59.791 45.833 0.00 0.00 0.00 2.23
305 306 3.740832 CACACACACACACACTACTATGG 59.259 47.826 0.00 0.00 0.00 2.74
306 307 3.639561 ACACACACACACACTACTATGGA 59.360 43.478 0.00 0.00 0.00 3.41
307 308 3.987868 CACACACACACACTACTATGGAC 59.012 47.826 0.00 0.00 0.00 4.02
308 309 3.242518 CACACACACACTACTATGGACG 58.757 50.000 0.00 0.00 0.00 4.79
309 310 2.230508 ACACACACACTACTATGGACGG 59.769 50.000 0.00 0.00 0.00 4.79
310 311 1.203994 ACACACACTACTATGGACGGC 59.796 52.381 0.00 0.00 0.00 5.68
311 312 0.454600 ACACACTACTATGGACGGCG 59.545 55.000 4.80 4.80 0.00 6.46
312 313 0.248907 CACACTACTATGGACGGCGG 60.249 60.000 13.24 0.00 0.00 6.13
313 314 0.682209 ACACTACTATGGACGGCGGT 60.682 55.000 13.24 0.00 0.00 5.68
314 315 0.248907 CACTACTATGGACGGCGGTG 60.249 60.000 13.24 1.95 0.00 4.94
334 335 2.040544 CGGGTCATGGCCTCACAAC 61.041 63.158 17.62 0.00 0.00 3.32
339 340 1.191489 TCATGGCCTCACAACGGAGA 61.191 55.000 3.32 0.00 37.05 3.71
363 364 3.470567 GCGACTCACGGCTTCACG 61.471 66.667 0.00 0.00 42.83 4.35
396 397 2.049063 GACTCACGGCTTCACGCT 60.049 61.111 0.00 0.00 39.13 5.07
438 439 0.806868 TTGTAGACGGTGTAGGCGAG 59.193 55.000 0.00 0.00 0.00 5.03
442 443 2.675423 ACGGTGTAGGCGAGCTCA 60.675 61.111 15.40 0.00 0.00 4.26
450 454 1.516365 TAGGCGAGCTCATACTCCGC 61.516 60.000 15.40 9.92 36.29 5.54
451 455 2.413351 GCGAGCTCATACTCCGCA 59.587 61.111 15.40 0.00 36.71 5.69
452 456 1.006805 GCGAGCTCATACTCCGCAT 60.007 57.895 15.40 0.00 36.71 4.73
457 461 1.502163 GCTCATACTCCGCATGTGCC 61.502 60.000 0.00 0.00 37.07 5.01
471 475 2.515057 TGCCGCCTTGAAACGTGT 60.515 55.556 0.00 0.00 0.00 4.49
472 476 1.227586 TGCCGCCTTGAAACGTGTA 60.228 52.632 0.00 0.00 0.00 2.90
485 489 1.215647 CGTGTAGTGGCACCCTCTC 59.784 63.158 15.27 5.31 36.08 3.20
486 490 1.215647 GTGTAGTGGCACCCTCTCG 59.784 63.158 15.27 0.00 33.53 4.04
487 491 2.184579 GTAGTGGCACCCTCTCGC 59.815 66.667 15.27 0.00 0.00 5.03
494 498 4.436998 CACCCTCTCGCCGGTGTC 62.437 72.222 16.01 0.00 43.84 3.67
538 543 4.735132 CGACCTCCGCCTCGCAAA 62.735 66.667 0.00 0.00 0.00 3.68
543 551 3.655810 CTCCGCCTCGCAAAGAGCT 62.656 63.158 0.00 0.00 45.54 4.09
548 556 1.569479 GCCTCGCAAAGAGCTTTCGT 61.569 55.000 0.00 0.00 45.54 3.85
552 560 0.179272 CGCAAAGAGCTTTCGTCGAC 60.179 55.000 5.18 5.18 42.61 4.20
554 562 2.511984 GCAAAGAGCTTTCGTCGACGA 61.512 52.381 34.97 34.97 43.11 4.20
576 584 1.605457 CCAAGCACGTCTTACAGCTCA 60.605 52.381 0.00 0.00 36.07 4.26
585 593 3.254060 GTCTTACAGCTCATCGAAGCAA 58.746 45.455 11.49 0.00 45.00 3.91
593 601 0.035152 TCATCGAAGCAATGCCACCT 60.035 50.000 0.00 0.00 0.00 4.00
595 603 1.098050 ATCGAAGCAATGCCACCTTC 58.902 50.000 0.00 0.00 33.41 3.46
619 627 2.429767 CCATCGCTGCAGGAGAGGA 61.430 63.158 17.12 0.00 0.00 3.71
620 628 1.747145 CATCGCTGCAGGAGAGGAT 59.253 57.895 17.12 0.00 0.00 3.24
624 632 3.040206 GCTGCAGGAGAGGATGCCA 62.040 63.158 17.12 0.00 41.85 4.92
625 633 1.153208 CTGCAGGAGAGGATGCCAC 60.153 63.158 5.57 0.00 41.85 5.01
629 637 2.202987 GGAGAGGATGCCACGCTG 60.203 66.667 0.00 0.00 0.00 5.18
643 651 4.395583 GCTGGTGCGCTTGCTCAC 62.396 66.667 9.73 7.14 40.12 3.51
668 676 1.298859 GACGACTCAATGGTGTGGCC 61.299 60.000 0.00 0.00 37.90 5.36
670 678 1.302511 GACTCAATGGTGTGGCCGT 60.303 57.895 0.00 0.00 41.21 5.68
672 680 0.398696 ACTCAATGGTGTGGCCGTTA 59.601 50.000 0.00 0.00 44.32 3.18
679 687 1.004918 GTGTGGCCGTTAGAGCTGT 60.005 57.895 0.00 0.00 0.00 4.40
682 690 2.273179 TGGCCGTTAGAGCTGTCGT 61.273 57.895 0.00 0.00 0.00 4.34
683 691 0.961857 TGGCCGTTAGAGCTGTCGTA 60.962 55.000 0.00 0.00 0.00 3.43
686 694 1.531470 GCCGTTAGAGCTGTCGTACTC 60.531 57.143 0.00 0.00 0.00 2.59
688 696 1.267433 CGTTAGAGCTGTCGTACTCCG 60.267 57.143 0.00 0.00 33.18 4.63
692 700 2.126580 GCTGTCGTACTCCGCGTT 60.127 61.111 4.92 0.00 36.19 4.84
695 703 0.166597 CTGTCGTACTCCGCGTTGTA 59.833 55.000 4.92 4.76 36.19 2.41
699 707 1.501741 GTACTCCGCGTTGTACCGA 59.498 57.895 20.88 3.71 34.59 4.69
735 743 3.622826 AGGCAGCGGTACCACGTT 61.623 61.111 13.54 0.00 35.98 3.99
740 748 3.475774 GCGGTACCACGTTCGCAG 61.476 66.667 13.54 0.00 46.33 5.18
754 762 2.749441 GCAGCCAGCACCTTCTCC 60.749 66.667 0.00 0.00 44.79 3.71
767 775 2.526450 CTTCTCCCGACATGGCTGCA 62.526 60.000 0.50 0.00 35.87 4.41
772 780 3.857854 CGACATGGCTGCACTCGC 61.858 66.667 0.50 0.00 39.24 5.03
809 836 3.588569 GTGGTGGAGGGGATAAGATAGT 58.411 50.000 0.00 0.00 0.00 2.12
851 878 1.017387 GAACCCTAAATCGGCAGCTG 58.983 55.000 10.11 10.11 0.00 4.24
896 923 4.652421 AGACAAGCCCGTAAATATAGTGGA 59.348 41.667 0.00 0.00 0.00 4.02
906 1086 4.388577 AAATATAGTGGATGAAGGGGGC 57.611 45.455 0.00 0.00 0.00 5.80
929 1109 0.252479 TTGCGGGCCCTCGTAAAATA 59.748 50.000 22.43 0.00 32.32 1.40
932 1112 1.265905 GCGGGCCCTCGTAAAATATTG 59.734 52.381 22.43 0.00 0.00 1.90
961 1141 2.606272 GACGTAAATTTAGCGGACCTGG 59.394 50.000 18.04 0.00 0.00 4.45
975 1155 0.469892 ACCTGGTCTGGGCCAAAAAG 60.470 55.000 8.04 2.84 38.18 2.27
997 1177 2.897972 GGATACGTTGTCCCGCCT 59.102 61.111 8.14 0.00 0.00 5.52
999 1179 2.125269 ATACGTTGTCCCGCCTGC 60.125 61.111 0.00 0.00 0.00 4.85
1001 1181 2.457743 ATACGTTGTCCCGCCTGCAA 62.458 55.000 0.00 0.00 0.00 4.08
1003 1183 2.840066 CGTTGTCCCGCCTGCAAAA 61.840 57.895 0.00 0.00 0.00 2.44
1007 1187 1.846007 TGTCCCGCCTGCAAAAATAT 58.154 45.000 0.00 0.00 0.00 1.28
1008 1188 1.476085 TGTCCCGCCTGCAAAAATATG 59.524 47.619 0.00 0.00 0.00 1.78
1009 1189 1.110442 TCCCGCCTGCAAAAATATGG 58.890 50.000 0.00 0.00 0.00 2.74
1010 1190 0.104671 CCCGCCTGCAAAAATATGGG 59.895 55.000 0.00 0.00 0.00 4.00
1011 1191 0.530431 CCGCCTGCAAAAATATGGGC 60.530 55.000 0.00 0.00 36.60 5.36
1012 1192 0.530431 CGCCTGCAAAAATATGGGCC 60.530 55.000 0.00 0.00 36.61 5.80
1013 1193 0.530431 GCCTGCAAAAATATGGGCCG 60.530 55.000 0.00 0.00 34.19 6.13
1014 1194 0.104671 CCTGCAAAAATATGGGCCGG 59.895 55.000 0.00 0.00 0.00 6.13
1016 1196 0.975040 TGCAAAAATATGGGCCGGCT 60.975 50.000 28.56 9.55 0.00 5.52
1017 1197 0.249447 GCAAAAATATGGGCCGGCTC 60.249 55.000 28.56 25.91 0.00 4.70
1019 1199 1.106944 AAAAATATGGGCCGGCTCCG 61.107 55.000 26.97 0.48 39.44 4.63
1021 1201 2.397413 AAATATGGGCCGGCTCCGAG 62.397 60.000 26.97 1.29 42.83 4.63
1023 1203 3.828083 TATGGGCCGGCTCCGAGAT 62.828 63.158 26.97 13.53 42.83 2.75
1024 1204 2.435120 TATGGGCCGGCTCCGAGATA 62.435 60.000 26.97 12.33 42.83 1.98
1025 1205 3.686045 GGGCCGGCTCCGAGATAG 61.686 72.222 28.56 0.00 42.83 2.08
1026 1206 4.365505 GGCCGGCTCCGAGATAGC 62.366 72.222 28.56 0.41 42.83 2.97
1027 1207 4.708968 GCCGGCTCCGAGATAGCG 62.709 72.222 22.15 0.00 41.03 4.26
1028 1208 4.708968 CCGGCTCCGAGATAGCGC 62.709 72.222 10.28 0.00 41.03 5.92
1029 1209 3.966104 CGGCTCCGAGATAGCGCA 61.966 66.667 11.47 0.00 41.03 6.09
1030 1210 2.417516 GGCTCCGAGATAGCGCAA 59.582 61.111 11.47 0.00 41.03 4.85
1031 1211 1.951631 GGCTCCGAGATAGCGCAAC 60.952 63.158 11.47 0.00 41.03 4.17
1032 1212 1.951631 GCTCCGAGATAGCGCAACC 60.952 63.158 11.47 0.00 0.00 3.77
1033 1213 1.736586 CTCCGAGATAGCGCAACCT 59.263 57.895 11.47 2.00 0.00 3.50
1034 1214 0.596083 CTCCGAGATAGCGCAACCTG 60.596 60.000 11.47 0.00 0.00 4.00
1201 1381 0.682209 TCCTCCCCCGAACGAACTAG 60.682 60.000 0.00 0.00 0.00 2.57
1203 1383 1.683011 CCTCCCCCGAACGAACTAGTA 60.683 57.143 0.00 0.00 0.00 1.82
1205 1385 1.004745 TCCCCCGAACGAACTAGTACT 59.995 52.381 0.00 0.00 0.00 2.73
1206 1386 1.403323 CCCCCGAACGAACTAGTACTC 59.597 57.143 0.00 0.00 0.00 2.59
1207 1387 1.403323 CCCCGAACGAACTAGTACTCC 59.597 57.143 0.00 0.00 0.00 3.85
1264 1444 3.322466 CCTCCACCCAAGCGGACT 61.322 66.667 0.00 0.00 34.64 3.85
1265 1445 2.750350 CTCCACCCAAGCGGACTT 59.250 61.111 0.00 0.00 36.19 3.01
1315 1501 4.684134 GCCTCCAAGCCCAAGCCA 62.684 66.667 0.00 0.00 41.25 4.75
1643 1847 1.134551 GCATCAAGGTGACCTCTCTCC 60.135 57.143 3.76 0.00 30.89 3.71
1653 1865 0.837272 ACCTCTCTCCCTCTCTCTCG 59.163 60.000 0.00 0.00 0.00 4.04
1688 1900 1.228988 AGCCCTTTTGCCCTCCTTG 60.229 57.895 0.00 0.00 0.00 3.61
2213 2508 1.221840 CAACATCCCAGCTACGCCT 59.778 57.895 0.00 0.00 0.00 5.52
2286 2581 5.412904 GGTAATCACTTCTCCAGTTTCCAAG 59.587 44.000 0.00 0.00 30.92 3.61
2349 2684 5.241506 AGTGTTTGTCCATGAAAATCGACAT 59.758 36.000 0.00 0.00 35.31 3.06
2440 3188 7.468141 AGCAGTCATAATATATCAAGGACGA 57.532 36.000 0.00 0.00 0.00 4.20
2461 3209 5.830991 ACGAATAAGAGATCACTAGAGCCTT 59.169 40.000 0.00 0.00 0.00 4.35
2537 3298 2.102420 CGTCTGGGCTGTGTATAATGGA 59.898 50.000 0.00 0.00 0.00 3.41
2589 3782 5.065988 GTCGTACATGTTGGCTTGGATATTT 59.934 40.000 2.30 0.00 0.00 1.40
2626 3823 6.182627 TCAGTTGGATTTAGAAGCATCATGT 58.817 36.000 0.00 0.00 0.00 3.21
2675 3872 6.908825 TGTGGTCTAAATGCACAGATTTTAC 58.091 36.000 0.00 0.00 0.00 2.01
2737 3934 9.965824 AAAATCTGTTTGTTTAACACCTCATAG 57.034 29.630 0.00 0.00 41.73 2.23
2741 3938 9.349713 TCTGTTTGTTTAACACCTCATAGAAAT 57.650 29.630 0.00 0.00 41.73 2.17
2769 3967 9.959749 GCCTTATCTAGAGATATAATTCTTCCG 57.040 37.037 0.00 0.00 36.94 4.30
2784 3982 3.024547 TCTTCCGTATCTTCCTCTGTGG 58.975 50.000 0.00 0.00 37.10 4.17
2790 3988 0.908198 ATCTTCCTCTGTGGGTGCTC 59.092 55.000 0.00 0.00 36.20 4.26
2791 3989 0.471780 TCTTCCTCTGTGGGTGCTCA 60.472 55.000 0.00 0.00 36.20 4.26
2792 3990 0.397941 CTTCCTCTGTGGGTGCTCAA 59.602 55.000 0.00 0.00 36.20 3.02
2794 3992 1.067295 TCCTCTGTGGGTGCTCAATT 58.933 50.000 0.00 0.00 36.20 2.32
2795 3993 2.265367 TCCTCTGTGGGTGCTCAATTA 58.735 47.619 0.00 0.00 36.20 1.40
2796 3994 2.846206 TCCTCTGTGGGTGCTCAATTAT 59.154 45.455 0.00 0.00 36.20 1.28
2797 3995 2.947652 CCTCTGTGGGTGCTCAATTATG 59.052 50.000 0.00 0.00 0.00 1.90
2798 3996 3.614092 CTCTGTGGGTGCTCAATTATGT 58.386 45.455 0.00 0.00 0.00 2.29
2799 3997 3.346315 TCTGTGGGTGCTCAATTATGTG 58.654 45.455 0.00 0.00 0.00 3.21
2800 3998 3.008923 TCTGTGGGTGCTCAATTATGTGA 59.991 43.478 0.00 0.00 0.00 3.58
2801 3999 3.949754 CTGTGGGTGCTCAATTATGTGAT 59.050 43.478 0.00 0.00 0.00 3.06
2802 4000 4.343231 TGTGGGTGCTCAATTATGTGATT 58.657 39.130 0.00 0.00 0.00 2.57
2803 4001 4.158209 TGTGGGTGCTCAATTATGTGATTG 59.842 41.667 0.00 0.00 38.16 2.67
2804 4002 3.130869 TGGGTGCTCAATTATGTGATTGC 59.869 43.478 0.00 0.00 37.03 3.56
2805 4003 3.130869 GGGTGCTCAATTATGTGATTGCA 59.869 43.478 0.00 0.00 37.03 4.08
2806 4004 4.107622 GGTGCTCAATTATGTGATTGCAC 58.892 43.478 0.00 0.00 45.35 4.57
2819 4017 5.581126 GTGATTGCACAATAATCCTTCCA 57.419 39.130 0.00 0.00 44.51 3.53
2820 4018 6.152932 GTGATTGCACAATAATCCTTCCAT 57.847 37.500 0.00 0.00 44.51 3.41
2821 4019 7.275888 GTGATTGCACAATAATCCTTCCATA 57.724 36.000 0.00 0.00 44.51 2.74
2822 4020 7.889469 GTGATTGCACAATAATCCTTCCATAT 58.111 34.615 0.00 0.00 44.51 1.78
2823 4021 8.025445 GTGATTGCACAATAATCCTTCCATATC 58.975 37.037 0.00 0.00 44.51 1.63
2824 4022 7.946219 TGATTGCACAATAATCCTTCCATATCT 59.054 33.333 0.00 0.00 34.43 1.98
2825 4023 7.750229 TTGCACAATAATCCTTCCATATCTC 57.250 36.000 0.00 0.00 0.00 2.75
2826 4024 6.240894 TGCACAATAATCCTTCCATATCTCC 58.759 40.000 0.00 0.00 0.00 3.71
2827 4025 5.649831 GCACAATAATCCTTCCATATCTCCC 59.350 44.000 0.00 0.00 0.00 4.30
2828 4026 6.523150 GCACAATAATCCTTCCATATCTCCCT 60.523 42.308 0.00 0.00 0.00 4.20
2829 4027 7.108847 CACAATAATCCTTCCATATCTCCCTC 58.891 42.308 0.00 0.00 0.00 4.30
2830 4028 7.028131 ACAATAATCCTTCCATATCTCCCTCT 58.972 38.462 0.00 0.00 0.00 3.69
2831 4029 7.037730 ACAATAATCCTTCCATATCTCCCTCTG 60.038 40.741 0.00 0.00 0.00 3.35
2832 4030 2.614259 TCCTTCCATATCTCCCTCTGC 58.386 52.381 0.00 0.00 0.00 4.26
2833 4031 1.274728 CCTTCCATATCTCCCTCTGCG 59.725 57.143 0.00 0.00 0.00 5.18
2834 4032 1.967066 CTTCCATATCTCCCTCTGCGT 59.033 52.381 0.00 0.00 0.00 5.24
2835 4033 1.332195 TCCATATCTCCCTCTGCGTG 58.668 55.000 0.00 0.00 0.00 5.34
2972 4202 4.232221 CTCTGATTCCATTGTGTTTGTGC 58.768 43.478 0.00 0.00 0.00 4.57
3011 4880 7.755591 TCTTCAACAACTAGCATCATTGATTC 58.244 34.615 0.00 0.00 0.00 2.52
3026 4895 4.656100 TTGATTCCTTCTCATGTTCCCA 57.344 40.909 0.00 0.00 0.00 4.37
3239 5112 2.746362 CAACCTGACTGCTGAATTCCTC 59.254 50.000 2.27 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.976353 TGCCATGTAACATAGTTCCAAATTTAT 58.024 29.630 0.00 0.00 0.00 1.40
5 6 8.354711 TGCCATGTAACATAGTTCCAAATTTA 57.645 30.769 0.00 0.00 0.00 1.40
6 7 7.238486 TGCCATGTAACATAGTTCCAAATTT 57.762 32.000 0.00 0.00 0.00 1.82
7 8 6.849085 TGCCATGTAACATAGTTCCAAATT 57.151 33.333 0.00 0.00 0.00 1.82
8 9 7.342799 AGAATGCCATGTAACATAGTTCCAAAT 59.657 33.333 0.00 0.00 0.00 2.32
9 10 6.663093 AGAATGCCATGTAACATAGTTCCAAA 59.337 34.615 0.00 0.00 0.00 3.28
10 11 6.186957 AGAATGCCATGTAACATAGTTCCAA 58.813 36.000 0.00 0.00 0.00 3.53
11 12 5.754782 AGAATGCCATGTAACATAGTTCCA 58.245 37.500 0.00 0.00 0.00 3.53
12 13 7.801716 TTAGAATGCCATGTAACATAGTTCC 57.198 36.000 0.00 0.00 0.00 3.62
13 14 8.673711 TGTTTAGAATGCCATGTAACATAGTTC 58.326 33.333 0.00 0.00 0.00 3.01
14 15 8.458843 GTGTTTAGAATGCCATGTAACATAGTT 58.541 33.333 0.00 0.00 0.00 2.24
15 16 7.067008 GGTGTTTAGAATGCCATGTAACATAGT 59.933 37.037 0.00 0.00 0.00 2.12
16 17 7.417612 GGTGTTTAGAATGCCATGTAACATAG 58.582 38.462 0.00 0.00 0.00 2.23
17 18 6.320164 GGGTGTTTAGAATGCCATGTAACATA 59.680 38.462 0.00 0.00 0.00 2.29
18 19 5.127031 GGGTGTTTAGAATGCCATGTAACAT 59.873 40.000 0.00 0.00 0.00 2.71
19 20 4.461081 GGGTGTTTAGAATGCCATGTAACA 59.539 41.667 0.00 0.00 0.00 2.41
20 21 4.142249 GGGGTGTTTAGAATGCCATGTAAC 60.142 45.833 0.00 0.00 0.00 2.50
21 22 4.020543 GGGGTGTTTAGAATGCCATGTAA 58.979 43.478 0.00 0.00 0.00 2.41
22 23 3.626222 GGGGGTGTTTAGAATGCCATGTA 60.626 47.826 0.00 0.00 0.00 2.29
23 24 2.456577 GGGGTGTTTAGAATGCCATGT 58.543 47.619 0.00 0.00 0.00 3.21
24 25 1.756538 GGGGGTGTTTAGAATGCCATG 59.243 52.381 0.00 0.00 0.00 3.66
25 26 1.645919 AGGGGGTGTTTAGAATGCCAT 59.354 47.619 0.00 0.00 0.00 4.40
26 27 1.005450 GAGGGGGTGTTTAGAATGCCA 59.995 52.381 0.00 0.00 0.00 4.92
27 28 1.685180 GGAGGGGGTGTTTAGAATGCC 60.685 57.143 0.00 0.00 0.00 4.40
28 29 1.685180 GGGAGGGGGTGTTTAGAATGC 60.685 57.143 0.00 0.00 0.00 3.56
29 30 1.923148 AGGGAGGGGGTGTTTAGAATG 59.077 52.381 0.00 0.00 0.00 2.67
30 31 2.378308 AGGGAGGGGGTGTTTAGAAT 57.622 50.000 0.00 0.00 0.00 2.40
31 32 2.143231 AAGGGAGGGGGTGTTTAGAA 57.857 50.000 0.00 0.00 0.00 2.10
32 33 2.143231 AAAGGGAGGGGGTGTTTAGA 57.857 50.000 0.00 0.00 0.00 2.10
33 34 2.917600 ACTAAAGGGAGGGGGTGTTTAG 59.082 50.000 0.00 0.00 36.95 1.85
34 35 3.008340 ACTAAAGGGAGGGGGTGTTTA 57.992 47.619 0.00 0.00 0.00 2.01
35 36 1.842699 ACTAAAGGGAGGGGGTGTTT 58.157 50.000 0.00 0.00 0.00 2.83
36 37 1.842699 AACTAAAGGGAGGGGGTGTT 58.157 50.000 0.00 0.00 0.00 3.32
37 38 1.842699 AAACTAAAGGGAGGGGGTGT 58.157 50.000 0.00 0.00 0.00 4.16
38 39 2.158370 ACAAAACTAAAGGGAGGGGGTG 60.158 50.000 0.00 0.00 0.00 4.61
39 40 2.149556 ACAAAACTAAAGGGAGGGGGT 58.850 47.619 0.00 0.00 0.00 4.95
40 41 2.992847 ACAAAACTAAAGGGAGGGGG 57.007 50.000 0.00 0.00 0.00 5.40
41 42 6.253758 AGAATAACAAAACTAAAGGGAGGGG 58.746 40.000 0.00 0.00 0.00 4.79
42 43 7.886446 TGTAGAATAACAAAACTAAAGGGAGGG 59.114 37.037 0.00 0.00 0.00 4.30
43 44 8.857694 TGTAGAATAACAAAACTAAAGGGAGG 57.142 34.615 0.00 0.00 0.00 4.30
91 92 9.245962 CGACTTAGGACGAATAGTAAATTGATT 57.754 33.333 0.00 0.00 32.91 2.57
92 93 8.411683 ACGACTTAGGACGAATAGTAAATTGAT 58.588 33.333 3.48 0.00 34.97 2.57
93 94 7.765307 ACGACTTAGGACGAATAGTAAATTGA 58.235 34.615 3.48 0.00 34.97 2.57
94 95 7.982371 ACGACTTAGGACGAATAGTAAATTG 57.018 36.000 3.48 0.00 34.97 2.32
95 96 8.992835 AAACGACTTAGGACGAATAGTAAATT 57.007 30.769 3.48 0.00 34.97 1.82
96 97 8.992835 AAAACGACTTAGGACGAATAGTAAAT 57.007 30.769 3.48 0.00 34.97 1.40
97 98 8.702438 CAAAAACGACTTAGGACGAATAGTAAA 58.298 33.333 3.48 0.00 34.97 2.01
98 99 7.867403 ACAAAAACGACTTAGGACGAATAGTAA 59.133 33.333 3.48 0.00 34.97 2.24
99 100 7.326789 CACAAAAACGACTTAGGACGAATAGTA 59.673 37.037 3.48 0.00 34.97 1.82
100 101 6.145048 CACAAAAACGACTTAGGACGAATAGT 59.855 38.462 3.48 0.00 34.97 2.12
101 102 6.400727 CCACAAAAACGACTTAGGACGAATAG 60.401 42.308 3.48 0.00 34.97 1.73
102 103 5.406175 CCACAAAAACGACTTAGGACGAATA 59.594 40.000 3.48 0.00 34.97 1.75
103 104 4.212636 CCACAAAAACGACTTAGGACGAAT 59.787 41.667 3.48 0.00 34.97 3.34
104 105 3.556775 CCACAAAAACGACTTAGGACGAA 59.443 43.478 3.48 0.00 34.97 3.85
105 106 3.125316 CCACAAAAACGACTTAGGACGA 58.875 45.455 3.48 0.00 34.97 4.20
106 107 2.222445 CCCACAAAAACGACTTAGGACG 59.778 50.000 0.00 0.00 36.75 4.79
107 108 2.031420 GCCCACAAAAACGACTTAGGAC 60.031 50.000 0.00 0.00 0.00 3.85
108 109 2.223745 GCCCACAAAAACGACTTAGGA 58.776 47.619 0.00 0.00 0.00 2.94
109 110 1.950909 TGCCCACAAAAACGACTTAGG 59.049 47.619 0.00 0.00 0.00 2.69
110 111 3.915437 ATGCCCACAAAAACGACTTAG 57.085 42.857 0.00 0.00 0.00 2.18
111 112 4.657436 AAATGCCCACAAAAACGACTTA 57.343 36.364 0.00 0.00 0.00 2.24
112 113 3.535280 AAATGCCCACAAAAACGACTT 57.465 38.095 0.00 0.00 0.00 3.01
113 114 3.535280 AAAATGCCCACAAAAACGACT 57.465 38.095 0.00 0.00 0.00 4.18
136 137 5.052481 TGCGATATATATTCTGCATCAGGC 58.948 41.667 11.82 0.00 45.13 4.85
137 138 7.543947 TTTGCGATATATATTCTGCATCAGG 57.456 36.000 14.92 0.00 31.70 3.86
138 139 8.002665 CGATTTGCGATATATATTCTGCATCAG 58.997 37.037 14.92 7.29 44.57 2.90
139 140 7.492344 ACGATTTGCGATATATATTCTGCATCA 59.508 33.333 14.92 8.58 44.57 3.07
140 141 7.845483 ACGATTTGCGATATATATTCTGCATC 58.155 34.615 14.92 11.18 44.57 3.91
141 142 7.708322 AGACGATTTGCGATATATATTCTGCAT 59.292 33.333 14.92 5.66 44.57 3.96
142 143 7.035612 AGACGATTTGCGATATATATTCTGCA 58.964 34.615 11.82 11.82 44.57 4.41
143 144 7.456684 AGACGATTTGCGATATATATTCTGC 57.543 36.000 0.00 3.10 44.57 4.26
144 145 7.843204 GCAAGACGATTTGCGATATATATTCTG 59.157 37.037 11.56 0.00 43.36 3.02
145 146 7.899974 GCAAGACGATTTGCGATATATATTCT 58.100 34.615 11.56 0.00 43.36 2.40
168 169 6.212235 TCTCGAGTTTTAAATTTGCAATGCA 58.788 32.000 13.13 2.72 36.47 3.96
169 170 6.689178 TCTCGAGTTTTAAATTTGCAATGC 57.311 33.333 13.13 0.00 0.00 3.56
181 182 8.234546 GCAGGAACATTTTAATCTCGAGTTTTA 58.765 33.333 13.13 9.15 0.00 1.52
182 183 7.040409 AGCAGGAACATTTTAATCTCGAGTTTT 60.040 33.333 13.13 10.13 0.00 2.43
183 184 6.431234 AGCAGGAACATTTTAATCTCGAGTTT 59.569 34.615 13.13 13.08 0.00 2.66
184 185 5.940470 AGCAGGAACATTTTAATCTCGAGTT 59.060 36.000 13.13 8.74 0.00 3.01
185 186 5.491982 AGCAGGAACATTTTAATCTCGAGT 58.508 37.500 13.13 0.00 0.00 4.18
186 187 6.535150 TGTAGCAGGAACATTTTAATCTCGAG 59.465 38.462 5.93 5.93 0.00 4.04
187 188 6.403049 TGTAGCAGGAACATTTTAATCTCGA 58.597 36.000 0.00 0.00 0.00 4.04
188 189 6.662414 TGTAGCAGGAACATTTTAATCTCG 57.338 37.500 0.00 0.00 0.00 4.04
197 198 6.714810 TGTGAACTAAATGTAGCAGGAACATT 59.285 34.615 0.00 0.00 46.77 2.71
198 199 6.149474 GTGTGAACTAAATGTAGCAGGAACAT 59.851 38.462 0.00 0.00 39.22 2.71
199 200 5.468746 GTGTGAACTAAATGTAGCAGGAACA 59.531 40.000 0.00 0.00 0.00 3.18
200 201 5.468746 TGTGTGAACTAAATGTAGCAGGAAC 59.531 40.000 0.00 0.00 0.00 3.62
201 202 5.468746 GTGTGTGAACTAAATGTAGCAGGAA 59.531 40.000 0.00 0.00 0.00 3.36
202 203 4.994852 GTGTGTGAACTAAATGTAGCAGGA 59.005 41.667 0.00 0.00 0.00 3.86
203 204 4.754618 TGTGTGTGAACTAAATGTAGCAGG 59.245 41.667 0.00 0.00 0.00 4.85
204 205 5.236263 TGTGTGTGTGAACTAAATGTAGCAG 59.764 40.000 0.00 0.00 0.00 4.24
205 206 5.007234 GTGTGTGTGTGAACTAAATGTAGCA 59.993 40.000 0.00 0.00 0.00 3.49
206 207 5.440685 GTGTGTGTGTGAACTAAATGTAGC 58.559 41.667 0.00 0.00 0.00 3.58
207 208 5.666203 CGTGTGTGTGTGAACTAAATGTAG 58.334 41.667 0.00 0.00 0.00 2.74
208 209 4.025563 GCGTGTGTGTGTGAACTAAATGTA 60.026 41.667 0.00 0.00 0.00 2.29
209 210 3.242608 GCGTGTGTGTGTGAACTAAATGT 60.243 43.478 0.00 0.00 0.00 2.71
210 211 3.288242 GCGTGTGTGTGTGAACTAAATG 58.712 45.455 0.00 0.00 0.00 2.32
211 212 2.033236 CGCGTGTGTGTGTGAACTAAAT 60.033 45.455 0.00 0.00 0.00 1.40
212 213 1.325037 CGCGTGTGTGTGTGAACTAAA 59.675 47.619 0.00 0.00 0.00 1.85
213 214 0.924777 CGCGTGTGTGTGTGAACTAA 59.075 50.000 0.00 0.00 0.00 2.24
214 215 1.484227 GCGCGTGTGTGTGTGAACTA 61.484 55.000 8.43 0.00 0.00 2.24
215 216 2.808958 GCGCGTGTGTGTGTGAACT 61.809 57.895 8.43 0.00 0.00 3.01
216 217 2.350760 GCGCGTGTGTGTGTGAAC 60.351 61.111 8.43 0.00 0.00 3.18
217 218 2.815647 TGCGCGTGTGTGTGTGAA 60.816 55.556 8.43 0.00 0.00 3.18
218 219 3.559344 GTGCGCGTGTGTGTGTGA 61.559 61.111 8.43 0.00 0.00 3.58
219 220 1.826299 TATGTGCGCGTGTGTGTGTG 61.826 55.000 8.43 0.00 0.00 3.82
220 221 1.556591 CTATGTGCGCGTGTGTGTGT 61.557 55.000 8.43 0.00 0.00 3.72
221 222 1.130411 CTATGTGCGCGTGTGTGTG 59.870 57.895 8.43 0.00 0.00 3.82
222 223 0.878523 AACTATGTGCGCGTGTGTGT 60.879 50.000 8.43 0.00 0.00 3.72
223 224 0.179250 GAACTATGTGCGCGTGTGTG 60.179 55.000 8.43 0.00 0.00 3.82
224 225 0.598942 TGAACTATGTGCGCGTGTGT 60.599 50.000 8.43 0.00 0.00 3.72
225 226 0.721154 ATGAACTATGTGCGCGTGTG 59.279 50.000 8.43 0.00 0.00 3.82
226 227 0.999406 GATGAACTATGTGCGCGTGT 59.001 50.000 8.43 0.00 0.00 4.49
227 228 0.998669 TGATGAACTATGTGCGCGTG 59.001 50.000 8.43 0.00 0.00 5.34
228 229 0.999406 GTGATGAACTATGTGCGCGT 59.001 50.000 8.43 0.00 0.00 6.01
229 230 0.998669 TGTGATGAACTATGTGCGCG 59.001 50.000 0.00 0.00 0.00 6.86
230 231 1.731709 TGTGTGATGAACTATGTGCGC 59.268 47.619 0.00 0.00 0.00 6.09
231 232 2.736192 TGTGTGTGATGAACTATGTGCG 59.264 45.455 0.00 0.00 0.00 5.34
232 233 3.498018 TGTGTGTGTGATGAACTATGTGC 59.502 43.478 0.00 0.00 0.00 4.57
233 234 4.511082 TGTGTGTGTGTGATGAACTATGTG 59.489 41.667 0.00 0.00 0.00 3.21
234 235 4.511454 GTGTGTGTGTGTGATGAACTATGT 59.489 41.667 0.00 0.00 0.00 2.29
235 236 4.511082 TGTGTGTGTGTGTGATGAACTATG 59.489 41.667 0.00 0.00 0.00 2.23
236 237 4.511454 GTGTGTGTGTGTGTGATGAACTAT 59.489 41.667 0.00 0.00 0.00 2.12
237 238 3.868661 GTGTGTGTGTGTGTGATGAACTA 59.131 43.478 0.00 0.00 0.00 2.24
238 239 2.677836 GTGTGTGTGTGTGTGATGAACT 59.322 45.455 0.00 0.00 0.00 3.01
239 240 2.418280 TGTGTGTGTGTGTGTGATGAAC 59.582 45.455 0.00 0.00 0.00 3.18
240 241 2.418280 GTGTGTGTGTGTGTGTGATGAA 59.582 45.455 0.00 0.00 0.00 2.57
241 242 2.006169 GTGTGTGTGTGTGTGTGATGA 58.994 47.619 0.00 0.00 0.00 2.92
242 243 1.736681 TGTGTGTGTGTGTGTGTGATG 59.263 47.619 0.00 0.00 0.00 3.07
243 244 1.737236 GTGTGTGTGTGTGTGTGTGAT 59.263 47.619 0.00 0.00 0.00 3.06
244 245 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
245 246 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
246 247 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
247 248 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
248 249 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
249 250 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
250 251 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
251 252 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
252 253 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
253 254 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
254 255 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
255 256 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
256 257 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
257 258 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
258 259 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
259 260 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
260 261 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
261 262 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
262 263 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
263 264 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
264 265 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
265 266 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
266 267 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
267 268 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
268 269 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
269 270 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
270 271 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
271 272 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
272 273 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
273 274 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
274 275 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
275 276 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
276 277 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
277 278 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
278 279 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
279 280 1.155889 AGTGTGTGTGTGTGTGTGTG 58.844 50.000 0.00 0.00 0.00 3.82
280 281 2.028476 AGTAGTGTGTGTGTGTGTGTGT 60.028 45.455 0.00 0.00 0.00 3.72
281 282 2.616960 AGTAGTGTGTGTGTGTGTGTG 58.383 47.619 0.00 0.00 0.00 3.82
282 283 4.368315 CATAGTAGTGTGTGTGTGTGTGT 58.632 43.478 0.00 0.00 0.00 3.72
283 284 3.740832 CCATAGTAGTGTGTGTGTGTGTG 59.259 47.826 0.00 0.00 0.00 3.82
284 285 3.639561 TCCATAGTAGTGTGTGTGTGTGT 59.360 43.478 0.00 0.00 0.00 3.72
285 286 3.987868 GTCCATAGTAGTGTGTGTGTGTG 59.012 47.826 0.00 0.00 0.00 3.82
286 287 3.305131 CGTCCATAGTAGTGTGTGTGTGT 60.305 47.826 0.00 0.00 0.00 3.72
287 288 3.242518 CGTCCATAGTAGTGTGTGTGTG 58.757 50.000 0.00 0.00 0.00 3.82
288 289 2.230508 CCGTCCATAGTAGTGTGTGTGT 59.769 50.000 0.00 0.00 0.00 3.72
289 290 2.876091 CCGTCCATAGTAGTGTGTGTG 58.124 52.381 0.00 0.00 0.00 3.82
290 291 1.203994 GCCGTCCATAGTAGTGTGTGT 59.796 52.381 0.00 0.00 0.00 3.72
291 292 1.797713 CGCCGTCCATAGTAGTGTGTG 60.798 57.143 0.00 0.00 0.00 3.82
292 293 0.454600 CGCCGTCCATAGTAGTGTGT 59.545 55.000 0.00 0.00 0.00 3.72
293 294 0.248907 CCGCCGTCCATAGTAGTGTG 60.249 60.000 0.00 0.00 0.00 3.82
294 295 0.682209 ACCGCCGTCCATAGTAGTGT 60.682 55.000 0.00 0.00 0.00 3.55
295 296 0.248907 CACCGCCGTCCATAGTAGTG 60.249 60.000 0.00 0.00 0.00 2.74
296 297 1.389609 CCACCGCCGTCCATAGTAGT 61.390 60.000 0.00 0.00 0.00 2.73
297 298 1.362717 CCACCGCCGTCCATAGTAG 59.637 63.158 0.00 0.00 0.00 2.57
298 299 2.788640 GCCACCGCCGTCCATAGTA 61.789 63.158 0.00 0.00 0.00 1.82
299 300 4.157120 GCCACCGCCGTCCATAGT 62.157 66.667 0.00 0.00 0.00 2.12
319 320 1.003839 TCCGTTGTGAGGCCATGAC 60.004 57.895 5.01 0.00 0.00 3.06
321 322 0.742281 CTCTCCGTTGTGAGGCCATG 60.742 60.000 5.01 0.00 33.04 3.66
323 324 3.059982 CTCTCCGTTGTGAGGCCA 58.940 61.111 5.01 0.00 33.04 5.36
327 328 2.811317 GCCGCTCTCCGTTGTGAG 60.811 66.667 0.00 0.00 35.64 3.51
347 348 1.154016 ATCGTGAAGCCGTGAGTCG 60.154 57.895 0.00 0.00 39.52 4.18
396 397 2.646175 GCCTGCGAGTACCACCTCA 61.646 63.158 0.00 0.00 0.00 3.86
442 443 2.588877 GCGGCACATGCGGAGTAT 60.589 61.111 14.88 0.00 43.02 2.12
450 454 1.442520 CGTTTCAAGGCGGCACATG 60.443 57.895 13.08 7.45 0.00 3.21
451 455 1.896660 ACGTTTCAAGGCGGCACAT 60.897 52.632 13.08 0.00 0.00 3.21
452 456 2.515057 ACGTTTCAAGGCGGCACA 60.515 55.556 13.08 0.00 0.00 4.57
457 461 0.511221 CCACTACACGTTTCAAGGCG 59.489 55.000 0.00 0.00 0.00 5.52
462 466 0.533308 GGGTGCCACTACACGTTTCA 60.533 55.000 0.00 0.00 41.65 2.69
512 517 3.111939 CGGAGGTCGCTCGATTCT 58.888 61.111 0.00 0.00 0.00 2.40
536 541 3.859650 TCGTCGACGAAAGCTCTTT 57.140 47.368 36.25 0.00 46.30 2.52
548 556 3.547249 GACGTGCTTGGGTCGTCGA 62.547 63.158 0.00 0.00 42.84 4.20
552 560 0.319211 TGTAAGACGTGCTTGGGTCG 60.319 55.000 0.00 0.00 37.42 4.79
554 562 0.602905 GCTGTAAGACGTGCTTGGGT 60.603 55.000 0.00 0.00 37.42 4.51
557 565 1.783284 TGAGCTGTAAGACGTGCTTG 58.217 50.000 0.00 0.00 37.42 4.01
558 566 2.611518 GATGAGCTGTAAGACGTGCTT 58.388 47.619 0.00 0.00 40.68 3.91
576 584 1.098050 GAAGGTGGCATTGCTTCGAT 58.902 50.000 8.82 0.00 0.00 3.59
593 601 4.838152 GCAGCGATGGGAGCCGAA 62.838 66.667 1.46 0.00 34.64 4.30
603 611 1.747145 CATCCTCTCCTGCAGCGAT 59.253 57.895 8.66 0.55 0.00 4.58
611 619 2.364842 AGCGTGGCATCCTCTCCT 60.365 61.111 0.00 0.00 0.00 3.69
643 651 3.902063 CATTGAGTCGTCGCGCCG 61.902 66.667 1.71 1.71 0.00 6.46
649 657 1.298859 GGCCACACCATTGAGTCGTC 61.299 60.000 0.00 0.00 38.86 4.20
653 661 0.398696 TAACGGCCACACCATTGAGT 59.601 50.000 2.24 0.00 39.03 3.41
654 662 1.086696 CTAACGGCCACACCATTGAG 58.913 55.000 2.24 0.00 39.03 3.02
656 664 1.086696 CTCTAACGGCCACACCATTG 58.913 55.000 2.24 0.00 39.03 2.82
657 665 0.676782 GCTCTAACGGCCACACCATT 60.677 55.000 2.24 0.00 39.03 3.16
668 676 2.455295 GGAGTACGACAGCTCTAACG 57.545 55.000 0.00 0.00 32.67 3.18
682 690 1.501741 GTCGGTACAACGCGGAGTA 59.498 57.895 12.47 10.13 0.00 2.59
683 691 2.256461 GTCGGTACAACGCGGAGT 59.744 61.111 12.47 11.29 0.00 3.85
692 700 2.731721 CGTGCAAGCGTCGGTACA 60.732 61.111 0.00 0.00 0.00 2.90
715 723 2.032071 GTGGTACCGCTGCCTGTT 59.968 61.111 18.49 0.00 0.00 3.16
718 726 3.584868 GAACGTGGTACCGCTGCCT 62.585 63.158 22.65 7.80 0.00 4.75
735 743 3.596066 GAGAAGGTGCTGGCTGCGA 62.596 63.158 11.85 0.00 46.63 5.10
739 747 3.710722 CGGGAGAAGGTGCTGGCT 61.711 66.667 0.00 0.00 0.00 4.75
740 748 3.706373 TCGGGAGAAGGTGCTGGC 61.706 66.667 0.00 0.00 34.75 4.85
754 762 3.190849 CGAGTGCAGCCATGTCGG 61.191 66.667 0.00 0.00 38.11 4.79
792 800 2.090210 TGCCACTATCTTATCCCCTCCA 60.090 50.000 0.00 0.00 0.00 3.86
809 836 0.826062 TCTCGCATTCAGATCTGCCA 59.174 50.000 18.36 7.36 34.89 4.92
867 894 6.827586 ATATTTACGGGCTTGTCTCAAAAA 57.172 33.333 0.00 0.00 0.00 1.94
868 895 7.065324 CACTATATTTACGGGCTTGTCTCAAAA 59.935 37.037 0.00 0.00 0.00 2.44
869 896 6.537301 CACTATATTTACGGGCTTGTCTCAAA 59.463 38.462 0.00 0.00 0.00 2.69
870 897 6.046593 CACTATATTTACGGGCTTGTCTCAA 58.953 40.000 0.00 0.00 0.00 3.02
871 898 5.452776 CCACTATATTTACGGGCTTGTCTCA 60.453 44.000 0.00 0.00 0.00 3.27
872 899 4.989168 CCACTATATTTACGGGCTTGTCTC 59.011 45.833 0.00 0.00 0.00 3.36
873 900 4.652421 TCCACTATATTTACGGGCTTGTCT 59.348 41.667 0.00 0.00 0.00 3.41
874 901 4.952460 TCCACTATATTTACGGGCTTGTC 58.048 43.478 0.00 0.00 0.00 3.18
875 902 5.071250 TCATCCACTATATTTACGGGCTTGT 59.929 40.000 0.00 0.00 0.00 3.16
876 903 5.547465 TCATCCACTATATTTACGGGCTTG 58.453 41.667 0.00 0.00 0.00 4.01
877 904 5.818678 TCATCCACTATATTTACGGGCTT 57.181 39.130 0.00 0.00 0.00 4.35
878 905 5.280011 CCTTCATCCACTATATTTACGGGCT 60.280 44.000 0.00 0.00 0.00 5.19
881 908 5.488341 CCCCTTCATCCACTATATTTACGG 58.512 45.833 0.00 0.00 0.00 4.02
896 923 2.679996 GCAAACCGCCCCCTTCAT 60.680 61.111 0.00 0.00 32.94 2.57
918 1098 2.546789 GGCCCGTCAATATTTTACGAGG 59.453 50.000 17.53 16.54 38.89 4.63
920 1100 2.159128 TCGGCCCGTCAATATTTTACGA 60.159 45.455 17.53 5.30 38.89 3.43
921 1101 2.033492 GTCGGCCCGTCAATATTTTACG 60.033 50.000 1.63 11.45 36.42 3.18
922 1102 2.033492 CGTCGGCCCGTCAATATTTTAC 60.033 50.000 1.63 0.00 0.00 2.01
929 1109 0.108041 ATTTACGTCGGCCCGTCAAT 60.108 50.000 10.48 8.94 42.00 2.57
932 1112 1.589779 CTAAATTTACGTCGGCCCGTC 59.410 52.381 10.48 0.00 42.00 4.79
944 1124 3.370103 CCAGACCAGGTCCGCTAAATTTA 60.370 47.826 16.72 0.00 32.18 1.40
961 1141 3.059982 GCCCTTTTTGGCCCAGAC 58.940 61.111 0.00 0.00 46.11 3.51
970 1150 1.170442 CAACGTATCCGGCCCTTTTT 58.830 50.000 0.00 0.00 38.78 1.94
975 1155 2.202974 GGACAACGTATCCGGCCC 60.203 66.667 0.00 0.00 38.78 5.80
989 1169 1.202405 CCATATTTTTGCAGGCGGGAC 60.202 52.381 0.00 0.00 0.00 4.46
996 1176 0.530431 GCCGGCCCATATTTTTGCAG 60.530 55.000 18.11 0.00 0.00 4.41
997 1177 0.975040 AGCCGGCCCATATTTTTGCA 60.975 50.000 26.15 0.00 0.00 4.08
999 1179 0.389025 GGAGCCGGCCCATATTTTTG 59.611 55.000 26.15 0.00 0.00 2.44
1001 1181 1.528309 CGGAGCCGGCCCATATTTT 60.528 57.895 26.15 0.00 35.56 1.82
1003 1183 2.847234 TCGGAGCCGGCCCATATT 60.847 61.111 26.15 1.92 40.25 1.28
1007 1187 4.533124 TATCTCGGAGCCGGCCCA 62.533 66.667 26.15 13.27 40.25 5.36
1008 1188 3.686045 CTATCTCGGAGCCGGCCC 61.686 72.222 26.15 22.78 40.25 5.80
1009 1189 4.365505 GCTATCTCGGAGCCGGCC 62.366 72.222 26.15 15.07 40.25 6.13
1010 1190 4.708968 CGCTATCTCGGAGCCGGC 62.709 72.222 21.89 21.89 40.25 6.13
1011 1191 4.708968 GCGCTATCTCGGAGCCGG 62.709 72.222 9.29 0.00 40.25 6.13
1012 1192 3.484742 TTGCGCTATCTCGGAGCCG 62.485 63.158 9.73 1.74 36.53 5.52
1013 1193 1.951631 GTTGCGCTATCTCGGAGCC 60.952 63.158 9.73 0.00 36.53 4.70
1014 1194 1.951631 GGTTGCGCTATCTCGGAGC 60.952 63.158 9.73 0.00 36.54 4.70
1016 1196 1.437573 CAGGTTGCGCTATCTCGGA 59.562 57.895 9.73 0.00 0.00 4.55
1017 1197 4.018609 CAGGTTGCGCTATCTCGG 57.981 61.111 9.73 0.00 0.00 4.63
1201 1381 3.799137 TGAATTTTGAACGCGGAGTAC 57.201 42.857 12.47 0.00 0.00 2.73
1203 1383 3.701532 TTTGAATTTTGAACGCGGAGT 57.298 38.095 12.47 0.00 0.00 3.85
1205 1385 4.865776 AGATTTTGAATTTTGAACGCGGA 58.134 34.783 12.47 0.00 0.00 5.54
1206 1386 4.679197 TGAGATTTTGAATTTTGAACGCGG 59.321 37.500 12.47 0.00 0.00 6.46
1207 1387 5.804449 TGAGATTTTGAATTTTGAACGCG 57.196 34.783 3.53 3.53 0.00 6.01
1264 1444 0.911045 TCCTCATGGCTGCCTCTGAA 60.911 55.000 21.03 6.22 0.00 3.02
1265 1445 0.911045 TTCCTCATGGCTGCCTCTGA 60.911 55.000 21.03 19.75 0.00 3.27
1661 1873 1.980772 CAAAAGGGCTGGGCTGGAG 60.981 63.158 0.00 0.00 0.00 3.86
1682 1894 1.301244 CGATCGATGGGCCAAGGAG 60.301 63.158 11.89 2.03 0.00 3.69
1688 1900 1.883084 GTCACACGATCGATGGGCC 60.883 63.158 24.34 3.54 0.00 5.80
2213 2508 4.893608 TGAACTGAACTGTATGCTAAGCA 58.106 39.130 0.00 0.00 44.86 3.91
2286 2581 6.149308 TGAACATGACCAACTCATATGTCAAC 59.851 38.462 0.00 0.00 40.74 3.18
2349 2684 6.102174 TCACTATCCCTGGTAGATACTACACA 59.898 42.308 10.39 5.87 0.00 3.72
2440 3188 9.023962 CATCTAAGGCTCTAGTGATCTCTTATT 57.976 37.037 2.05 0.00 0.00 1.40
2461 3209 8.497910 AGCAAGTAAAAGGATAGGATCATCTA 57.502 34.615 0.00 0.00 0.00 1.98
2537 3298 5.097742 TGATGTCCACGGATTAGAAATGT 57.902 39.130 0.00 0.00 0.00 2.71
2589 3782 4.265904 TCCAACTGAAATAAGCGTCTGA 57.734 40.909 0.00 0.00 0.00 3.27
2698 3895 9.480053 AACAAACAGATTTTGGAAGTATGATTG 57.520 29.630 2.08 0.00 33.92 2.67
2769 3967 1.834263 AGCACCCACAGAGGAAGATAC 59.166 52.381 0.00 0.00 41.22 2.24
2784 3982 4.107622 GTGCAATCACATAATTGAGCACC 58.892 43.478 0.00 0.00 42.66 5.01
2797 3995 5.581126 TGGAAGGATTATTGTGCAATCAC 57.419 39.130 0.18 0.00 43.40 3.06
2798 3996 7.946219 AGATATGGAAGGATTATTGTGCAATCA 59.054 33.333 0.18 0.00 34.66 2.57
2799 3997 8.345724 AGATATGGAAGGATTATTGTGCAATC 57.654 34.615 0.18 0.00 32.50 2.67
2800 3998 7.395489 GGAGATATGGAAGGATTATTGTGCAAT 59.605 37.037 2.83 2.83 34.93 3.56
2801 3999 6.716628 GGAGATATGGAAGGATTATTGTGCAA 59.283 38.462 0.00 0.00 0.00 4.08
2802 4000 6.240894 GGAGATATGGAAGGATTATTGTGCA 58.759 40.000 0.00 0.00 0.00 4.57
2803 4001 5.649831 GGGAGATATGGAAGGATTATTGTGC 59.350 44.000 0.00 0.00 0.00 4.57
2804 4002 7.025520 AGGGAGATATGGAAGGATTATTGTG 57.974 40.000 0.00 0.00 0.00 3.33
2805 4003 7.028131 AGAGGGAGATATGGAAGGATTATTGT 58.972 38.462 0.00 0.00 0.00 2.71
2806 4004 7.337167 CAGAGGGAGATATGGAAGGATTATTG 58.663 42.308 0.00 0.00 0.00 1.90
2807 4005 6.069731 GCAGAGGGAGATATGGAAGGATTATT 60.070 42.308 0.00 0.00 0.00 1.40
2808 4006 5.428131 GCAGAGGGAGATATGGAAGGATTAT 59.572 44.000 0.00 0.00 0.00 1.28
2809 4007 4.780021 GCAGAGGGAGATATGGAAGGATTA 59.220 45.833 0.00 0.00 0.00 1.75
2810 4008 3.586618 GCAGAGGGAGATATGGAAGGATT 59.413 47.826 0.00 0.00 0.00 3.01
2811 4009 3.180507 GCAGAGGGAGATATGGAAGGAT 58.819 50.000 0.00 0.00 0.00 3.24
2812 4010 2.614259 GCAGAGGGAGATATGGAAGGA 58.386 52.381 0.00 0.00 0.00 3.36
2813 4011 1.274728 CGCAGAGGGAGATATGGAAGG 59.725 57.143 0.00 0.00 0.00 3.46
2814 4012 1.967066 ACGCAGAGGGAGATATGGAAG 59.033 52.381 0.00 0.00 0.00 3.46
2815 4013 1.688735 CACGCAGAGGGAGATATGGAA 59.311 52.381 0.00 0.00 0.00 3.53
2816 4014 1.332195 CACGCAGAGGGAGATATGGA 58.668 55.000 0.00 0.00 0.00 3.41
2817 4015 1.043816 ACACGCAGAGGGAGATATGG 58.956 55.000 0.00 0.00 0.00 2.74
2818 4016 2.887783 AGTACACGCAGAGGGAGATATG 59.112 50.000 0.00 0.00 0.00 1.78
2819 4017 3.150767 GAGTACACGCAGAGGGAGATAT 58.849 50.000 0.00 0.00 0.00 1.63
2820 4018 2.573369 GAGTACACGCAGAGGGAGATA 58.427 52.381 0.00 0.00 0.00 1.98
2821 4019 1.394618 GAGTACACGCAGAGGGAGAT 58.605 55.000 0.00 0.00 0.00 2.75
2822 4020 1.025113 CGAGTACACGCAGAGGGAGA 61.025 60.000 0.00 0.00 0.00 3.71
2823 4021 1.025113 TCGAGTACACGCAGAGGGAG 61.025 60.000 7.90 0.00 0.00 4.30
2824 4022 0.393944 ATCGAGTACACGCAGAGGGA 60.394 55.000 7.90 0.00 0.00 4.20
2825 4023 0.456221 AATCGAGTACACGCAGAGGG 59.544 55.000 7.90 0.00 0.00 4.30
2826 4024 3.243101 ACATAATCGAGTACACGCAGAGG 60.243 47.826 7.90 0.03 0.00 3.69
2827 4025 3.726235 CACATAATCGAGTACACGCAGAG 59.274 47.826 7.90 0.01 0.00 3.35
2828 4026 3.375922 TCACATAATCGAGTACACGCAGA 59.624 43.478 7.90 0.00 0.00 4.26
2829 4027 3.691498 TCACATAATCGAGTACACGCAG 58.309 45.455 7.90 0.00 0.00 5.18
2830 4028 3.768468 TCACATAATCGAGTACACGCA 57.232 42.857 7.90 0.00 0.00 5.24
2831 4029 5.684184 TGTAATCACATAATCGAGTACACGC 59.316 40.000 7.90 0.00 37.67 5.34
2832 4030 7.853377 ATGTAATCACATAATCGAGTACACG 57.147 36.000 6.34 6.34 43.14 4.49
3053 4922 3.925688 ACAGCGCATGACTTTTATACG 57.074 42.857 11.47 0.00 0.00 3.06
3141 5013 3.059352 ACATTACCACAGGCAAGAGTC 57.941 47.619 0.00 0.00 0.00 3.36
3150 5022 7.766278 AGATTCAGCTAGTAAACATTACCACAG 59.234 37.037 0.00 0.00 0.00 3.66
3239 5112 1.221466 TTTTCTGCTGCCACGAGTCG 61.221 55.000 11.85 11.85 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.