Multiple sequence alignment - TraesCS1B01G332500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G332500 chr1B 100.000 4905 0 0 1 4905 558997025 559001929 0.000000e+00 9058
1 TraesCS1B01G332500 chr1A 88.778 3217 208 76 3 3168 511004421 511007535 0.000000e+00 3799
2 TraesCS1B01G332500 chr1A 87.237 619 70 7 3328 3940 511007532 511008147 0.000000e+00 697
3 TraesCS1B01G332500 chr1D 88.721 3245 169 80 3 3168 414277682 414280808 0.000000e+00 3783
4 TraesCS1B01G332500 chr1D 89.679 436 39 4 3513 3943 414281096 414281530 7.180000e-153 551
5 TraesCS1B01G332500 chr1D 94.706 170 9 0 3163 3332 393753451 393753282 1.050000e-66 265
6 TraesCS1B01G332500 chr1D 92.350 183 10 3 3147 3329 423269493 423269671 1.750000e-64 257
7 TraesCS1B01G332500 chr6B 95.450 967 40 3 3941 4904 148964657 148963692 0.000000e+00 1539
8 TraesCS1B01G332500 chr6B 94.650 972 46 5 3936 4904 587448000 587448968 0.000000e+00 1502
9 TraesCS1B01G332500 chr6B 92.857 182 11 2 3161 3340 320413108 320412927 3.770000e-66 263
10 TraesCS1B01G332500 chr7B 95.238 966 42 3 3942 4904 525319925 525318961 0.000000e+00 1526
11 TraesCS1B01G332500 chr4B 94.824 966 43 6 3942 4904 110220965 110221926 0.000000e+00 1500
12 TraesCS1B01G332500 chr4B 94.611 965 47 4 3943 4904 403309230 403308268 0.000000e+00 1489
13 TraesCS1B01G332500 chr5D 94.715 965 46 4 3943 4904 384041520 384040558 0.000000e+00 1495
14 TraesCS1B01G332500 chr2B 94.704 963 46 4 3945 4904 608342418 608343378 0.000000e+00 1491
15 TraesCS1B01G332500 chr7D 94.617 966 44 6 3943 4905 2781146 2782106 0.000000e+00 1489
16 TraesCS1B01G332500 chr5B 94.611 965 47 4 3943 4904 608956757 608957719 0.000000e+00 1489
17 TraesCS1B01G332500 chr3B 95.322 171 8 0 3160 3330 326997374 326997204 6.260000e-69 272
18 TraesCS1B01G332500 chr6D 93.370 181 11 1 3161 3340 206560442 206560262 2.910000e-67 267
19 TraesCS1B01G332500 chr6A 93.370 181 11 1 3161 3340 276304157 276304337 2.910000e-67 267
20 TraesCS1B01G332500 chr5A 95.238 168 8 0 3162 3329 382566635 382566802 2.910000e-67 267
21 TraesCS1B01G332500 chr2D 94.737 171 9 0 3164 3334 560959484 560959654 2.910000e-67 267
22 TraesCS1B01G332500 chr7A 94.737 171 8 1 3162 3332 431989279 431989110 1.050000e-66 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G332500 chr1B 558997025 559001929 4904 False 9058 9058 100.0000 1 4905 1 chr1B.!!$F1 4904
1 TraesCS1B01G332500 chr1A 511004421 511008147 3726 False 2248 3799 88.0075 3 3940 2 chr1A.!!$F1 3937
2 TraesCS1B01G332500 chr1D 414277682 414281530 3848 False 2167 3783 89.2000 3 3943 2 chr1D.!!$F2 3940
3 TraesCS1B01G332500 chr6B 148963692 148964657 965 True 1539 1539 95.4500 3941 4904 1 chr6B.!!$R1 963
4 TraesCS1B01G332500 chr6B 587448000 587448968 968 False 1502 1502 94.6500 3936 4904 1 chr6B.!!$F1 968
5 TraesCS1B01G332500 chr7B 525318961 525319925 964 True 1526 1526 95.2380 3942 4904 1 chr7B.!!$R1 962
6 TraesCS1B01G332500 chr4B 110220965 110221926 961 False 1500 1500 94.8240 3942 4904 1 chr4B.!!$F1 962
7 TraesCS1B01G332500 chr4B 403308268 403309230 962 True 1489 1489 94.6110 3943 4904 1 chr4B.!!$R1 961
8 TraesCS1B01G332500 chr5D 384040558 384041520 962 True 1495 1495 94.7150 3943 4904 1 chr5D.!!$R1 961
9 TraesCS1B01G332500 chr2B 608342418 608343378 960 False 1491 1491 94.7040 3945 4904 1 chr2B.!!$F1 959
10 TraesCS1B01G332500 chr7D 2781146 2782106 960 False 1489 1489 94.6170 3943 4905 1 chr7D.!!$F1 962
11 TraesCS1B01G332500 chr5B 608956757 608957719 962 False 1489 1489 94.6110 3943 4904 1 chr5B.!!$F1 961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 899 0.032615 CTCACTAGTCAGAGCCCCCT 60.033 60.0 0.00 0.00 0.00 4.79 F
860 900 0.033011 TCACTAGTCAGAGCCCCCTC 60.033 60.0 0.00 0.00 38.42 4.30 F
1004 1048 0.036671 GTTTCCCTCCACTACACCGG 60.037 60.0 0.00 0.00 0.00 5.28 F
2727 2811 0.178068 TGAACTAGGCTTCCGATGGC 59.822 55.0 0.00 0.00 0.00 4.40 F
3534 3753 0.381801 AAACTTGAGCGGTGCACTTG 59.618 50.0 17.98 10.97 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 1800 0.318107 ACTTCATGCGTGCAAAGTGC 60.318 50.000 11.17 0.00 45.29 4.40 R
2113 2178 0.397941 TTTCCTCACCTGCCAGACAG 59.602 55.000 0.00 0.00 46.77 3.51 R
2938 3027 1.400142 CCGACACACAAACACACACAT 59.600 47.619 0.00 0.00 0.00 3.21 R
3876 4100 1.035932 TGTCTCCCTTCGACGATCCC 61.036 60.000 0.00 0.00 34.17 3.85 R
4652 4881 1.302511 CGGTGTCCTTTCCCAGTGG 60.303 63.158 0.63 0.63 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.248661 CGATCTAGAGCACACGTGGG 60.249 60.000 21.57 18.56 0.00 4.61
42 43 2.597217 CACGTGGGGTGCCATGTT 60.597 61.111 7.95 0.00 40.33 2.71
49 50 1.530419 GGGTGCCATGTTGGTGTCA 60.530 57.895 0.00 0.00 40.46 3.58
59 60 2.836793 TTGGTGTCACGCGTCTCGA 61.837 57.895 9.86 0.00 41.67 4.04
66 68 1.226575 CACGCGTCTCGATTGGCTA 60.227 57.895 9.86 0.00 41.67 3.93
70 72 1.334689 CGCGTCTCGATTGGCTATGTA 60.335 52.381 0.00 0.00 41.67 2.29
87 89 3.170991 TGTAGTAGCACTTCACTCCCT 57.829 47.619 0.00 0.00 0.00 4.20
95 97 2.911484 CACTTCACTCCCTCTTATGCC 58.089 52.381 0.00 0.00 0.00 4.40
170 173 5.408299 TCATGGACAACTTCTTGTATCAACG 59.592 40.000 0.00 0.00 40.93 4.10
211 214 8.715191 TTTTAATCATGCAAACCAATGATACC 57.285 30.769 0.00 0.00 33.81 2.73
212 215 4.942761 ATCATGCAAACCAATGATACCC 57.057 40.909 0.00 0.00 32.56 3.69
213 216 2.687425 TCATGCAAACCAATGATACCCG 59.313 45.455 0.00 0.00 0.00 5.28
301 305 4.818546 ACACTGTCTCCTTCAAGAAACATG 59.181 41.667 0.00 0.00 0.00 3.21
328 332 1.946768 GCGCACATTTTAGATGGCCTA 59.053 47.619 3.32 0.00 0.00 3.93
332 336 5.278266 GCGCACATTTTAGATGGCCTATTTA 60.278 40.000 3.32 0.00 0.00 1.40
461 483 9.241317 CAAATTGATATTGCTGGATTCTTGTAC 57.759 33.333 0.00 0.00 0.00 2.90
462 484 8.757982 AATTGATATTGCTGGATTCTTGTACT 57.242 30.769 0.00 0.00 0.00 2.73
463 485 9.851686 AATTGATATTGCTGGATTCTTGTACTA 57.148 29.630 0.00 0.00 0.00 1.82
464 486 8.893219 TTGATATTGCTGGATTCTTGTACTAG 57.107 34.615 0.00 0.00 0.00 2.57
471 494 9.817809 TTGCTGGATTCTTGTACTAGTATTAAG 57.182 33.333 17.35 17.35 0.00 1.85
473 496 9.465985 GCTGGATTCTTGTACTAGTATTAAGAC 57.534 37.037 22.20 15.59 0.00 3.01
610 633 2.051334 ACTCTATGCTCAGCGAGTCT 57.949 50.000 0.14 0.00 31.51 3.24
623 646 0.671781 CGAGTCTGCAAGGGTCCAAG 60.672 60.000 0.00 0.00 0.00 3.61
782 805 1.541310 AATCCAGGAACGGACGAGCA 61.541 55.000 0.00 0.00 38.07 4.26
783 806 1.330655 ATCCAGGAACGGACGAGCAT 61.331 55.000 0.00 0.00 38.07 3.79
785 808 0.174845 CCAGGAACGGACGAGCATAA 59.825 55.000 0.00 0.00 0.00 1.90
787 810 1.659098 CAGGAACGGACGAGCATAAAC 59.341 52.381 0.00 0.00 0.00 2.01
788 811 1.549170 AGGAACGGACGAGCATAAACT 59.451 47.619 0.00 0.00 0.00 2.66
845 874 0.689623 CCCAAAGGTCAGAGCTCACT 59.310 55.000 17.77 5.46 0.00 3.41
859 899 0.032615 CTCACTAGTCAGAGCCCCCT 60.033 60.000 0.00 0.00 0.00 4.79
860 900 0.033011 TCACTAGTCAGAGCCCCCTC 60.033 60.000 0.00 0.00 38.42 4.30
862 902 1.830408 CTAGTCAGAGCCCCCTCCG 60.830 68.421 0.00 0.00 38.96 4.63
867 907 4.144727 AGAGCCCCCTCCGTCGAT 62.145 66.667 0.00 0.00 38.96 3.59
868 908 3.607661 GAGCCCCCTCCGTCGATC 61.608 72.222 0.00 0.00 31.68 3.69
871 911 2.597805 CCCCCTCCGTCGATCGAT 60.598 66.667 22.50 0.00 42.86 3.59
872 912 2.627737 CCCCCTCCGTCGATCGATC 61.628 68.421 22.50 15.68 42.86 3.69
897 937 1.340657 CGTGCTCGTGCTCTTCACTC 61.341 60.000 11.19 0.00 43.46 3.51
898 938 0.319040 GTGCTCGTGCTCTTCACTCA 60.319 55.000 11.19 0.00 43.46 3.41
899 939 0.319040 TGCTCGTGCTCTTCACTCAC 60.319 55.000 11.19 0.00 43.46 3.51
900 940 1.011451 GCTCGTGCTCTTCACTCACC 61.011 60.000 1.41 0.00 43.46 4.02
901 941 0.730834 CTCGTGCTCTTCACTCACCG 60.731 60.000 0.00 0.00 43.46 4.94
902 942 2.375766 CGTGCTCTTCACTCACCGC 61.376 63.158 0.00 0.00 43.46 5.68
903 943 2.049156 TGCTCTTCACTCACCGCG 60.049 61.111 0.00 0.00 0.00 6.46
904 944 2.049063 GCTCTTCACTCACCGCGT 60.049 61.111 4.92 0.00 0.00 6.01
905 945 2.089349 GCTCTTCACTCACCGCGTC 61.089 63.158 4.92 0.00 0.00 5.19
906 946 1.285950 CTCTTCACTCACCGCGTCA 59.714 57.895 4.92 0.00 0.00 4.35
907 947 1.004277 CTCTTCACTCACCGCGTCAC 61.004 60.000 4.92 0.00 0.00 3.67
908 948 2.022129 CTTCACTCACCGCGTCACC 61.022 63.158 4.92 0.00 0.00 4.02
909 949 3.509137 TTCACTCACCGCGTCACCC 62.509 63.158 4.92 0.00 0.00 4.61
910 950 4.293648 CACTCACCGCGTCACCCA 62.294 66.667 4.92 0.00 0.00 4.51
911 951 3.542676 ACTCACCGCGTCACCCAA 61.543 61.111 4.92 0.00 0.00 4.12
912 952 2.738521 CTCACCGCGTCACCCAAG 60.739 66.667 4.92 0.00 0.00 3.61
913 953 3.515316 CTCACCGCGTCACCCAAGT 62.515 63.158 4.92 0.00 0.00 3.16
914 954 3.041940 CACCGCGTCACCCAAGTC 61.042 66.667 4.92 0.00 0.00 3.01
915 955 4.309950 ACCGCGTCACCCAAGTCC 62.310 66.667 4.92 0.00 0.00 3.85
916 956 4.308458 CCGCGTCACCCAAGTCCA 62.308 66.667 4.92 0.00 0.00 4.02
917 957 3.041940 CGCGTCACCCAAGTCCAC 61.042 66.667 0.00 0.00 0.00 4.02
918 958 2.426023 GCGTCACCCAAGTCCACT 59.574 61.111 0.00 0.00 0.00 4.00
982 1026 3.404899 ACCCGCGTATATAAACCATTGG 58.595 45.455 4.92 0.00 0.00 3.16
1002 1046 2.501261 GTTGTTTCCCTCCACTACACC 58.499 52.381 0.00 0.00 0.00 4.16
1003 1047 0.682852 TGTTTCCCTCCACTACACCG 59.317 55.000 0.00 0.00 0.00 4.94
1004 1048 0.036671 GTTTCCCTCCACTACACCGG 60.037 60.000 0.00 0.00 0.00 5.28
1005 1049 1.833787 TTTCCCTCCACTACACCGGC 61.834 60.000 0.00 0.00 0.00 6.13
1006 1050 3.782443 CCCTCCACTACACCGGCC 61.782 72.222 0.00 0.00 0.00 6.13
1007 1051 3.782443 CCTCCACTACACCGGCCC 61.782 72.222 0.00 0.00 0.00 5.80
1008 1052 3.000819 CTCCACTACACCGGCCCA 61.001 66.667 0.00 0.00 0.00 5.36
1009 1053 3.000819 TCCACTACACCGGCCCAG 61.001 66.667 0.00 0.00 0.00 4.45
1010 1054 4.096003 CCACTACACCGGCCCAGG 62.096 72.222 0.00 0.00 37.30 4.45
1114 1158 1.330655 GGGTCAGAGATCAGCGGGAA 61.331 60.000 0.00 0.00 0.00 3.97
1181 1231 2.047179 GCCTCGCCGTTCTTCCTT 60.047 61.111 0.00 0.00 0.00 3.36
1256 1309 6.315091 TCGTTCTTGTATTAGCTAGGCTAG 57.685 41.667 17.33 17.33 42.34 3.42
1285 1338 1.993370 GTCTCCATTTCGTTGACTCCG 59.007 52.381 0.00 0.00 0.00 4.63
1302 1356 6.011476 GACTCCGTAGTCCTTAATGATACC 57.989 45.833 0.00 0.00 45.50 2.73
1353 1409 3.782443 AGGGCCGCGAAAGTAGGG 61.782 66.667 8.23 0.00 0.00 3.53
1358 1414 2.511600 CGCGAAAGTAGGGGCAGG 60.512 66.667 0.00 0.00 0.00 4.85
1477 1533 3.068729 GCTACCCCGTACACCGACC 62.069 68.421 0.00 0.00 39.56 4.79
1554 1610 0.179145 GTAGCTACGGTGACACGCAT 60.179 55.000 8.40 0.00 37.37 4.73
1557 1613 1.446099 CTACGGTGACACGCATGCT 60.446 57.895 17.13 0.00 37.37 3.79
1593 1649 2.741211 TTCTCGCAGCAGCAGCAG 60.741 61.111 10.77 6.73 45.49 4.24
1725 1785 2.028930 GGTATTCGCATAGCTAGCACCT 60.029 50.000 18.83 0.00 31.59 4.00
1727 1787 2.795175 TTCGCATAGCTAGCACCTAC 57.205 50.000 18.83 0.98 0.00 3.18
1730 1790 2.812591 TCGCATAGCTAGCACCTACTAC 59.187 50.000 18.83 0.00 0.00 2.73
1731 1791 2.814919 CGCATAGCTAGCACCTACTACT 59.185 50.000 18.83 0.00 0.00 2.57
1734 1794 5.617308 CGCATAGCTAGCACCTACTACTTAC 60.617 48.000 18.83 0.00 0.00 2.34
1736 1796 6.568844 GCATAGCTAGCACCTACTACTTACTG 60.569 46.154 18.83 0.00 0.00 2.74
1737 1797 5.113446 AGCTAGCACCTACTACTTACTGA 57.887 43.478 18.83 0.00 0.00 3.41
1738 1798 5.697067 AGCTAGCACCTACTACTTACTGAT 58.303 41.667 18.83 0.00 0.00 2.90
1739 1799 6.130569 AGCTAGCACCTACTACTTACTGATT 58.869 40.000 18.83 0.00 0.00 2.57
1740 1800 6.039941 AGCTAGCACCTACTACTTACTGATTG 59.960 42.308 18.83 0.00 0.00 2.67
1741 1801 5.012328 AGCACCTACTACTTACTGATTGC 57.988 43.478 0.00 0.00 0.00 3.56
1742 1802 4.466370 AGCACCTACTACTTACTGATTGCA 59.534 41.667 0.00 0.00 0.00 4.08
1743 1803 4.567159 GCACCTACTACTTACTGATTGCAC 59.433 45.833 0.00 0.00 0.00 4.57
1744 1804 5.624738 GCACCTACTACTTACTGATTGCACT 60.625 44.000 0.00 0.00 0.00 4.40
1745 1805 6.398918 CACCTACTACTTACTGATTGCACTT 58.601 40.000 0.00 0.00 0.00 3.16
1746 1806 6.874134 CACCTACTACTTACTGATTGCACTTT 59.126 38.462 0.00 0.00 0.00 2.66
1747 1807 6.874134 ACCTACTACTTACTGATTGCACTTTG 59.126 38.462 0.00 0.00 0.00 2.77
1748 1808 5.613358 ACTACTTACTGATTGCACTTTGC 57.387 39.130 0.00 0.00 45.29 3.68
1757 1817 4.632037 GCACTTTGCACGCATGAA 57.368 50.000 0.00 0.00 44.26 2.57
1758 1818 2.427360 GCACTTTGCACGCATGAAG 58.573 52.632 0.00 0.00 44.26 3.02
1759 1819 0.318107 GCACTTTGCACGCATGAAGT 60.318 50.000 0.00 3.77 44.26 3.01
1760 1820 1.865248 GCACTTTGCACGCATGAAGTT 60.865 47.619 6.40 0.00 44.26 2.66
1761 1821 2.604373 GCACTTTGCACGCATGAAGTTA 60.604 45.455 6.40 0.00 44.26 2.24
1762 1822 3.825308 CACTTTGCACGCATGAAGTTAT 58.175 40.909 6.40 0.00 30.41 1.89
1763 1823 3.605056 CACTTTGCACGCATGAAGTTATG 59.395 43.478 6.40 0.00 30.41 1.90
1871 1931 2.569134 GCGACGAGAAGGAGCAGT 59.431 61.111 0.00 0.00 0.00 4.40
1916 1976 3.733960 CGGACAGAGACGCCGTCA 61.734 66.667 20.65 0.00 40.17 4.35
1941 2001 1.952266 GCCGACTTTCAAGGTACGCG 61.952 60.000 3.53 3.53 0.00 6.01
1943 2003 1.414897 GACTTTCAAGGTACGCGCG 59.585 57.895 30.96 30.96 0.00 6.86
1944 2004 2.095843 CTTTCAAGGTACGCGCGC 59.904 61.111 32.58 23.91 0.00 6.86
1945 2005 2.662196 TTTCAAGGTACGCGCGCA 60.662 55.556 32.58 16.39 0.00 6.09
1971 2031 2.194597 TGGCGACCCCATATTGCC 59.805 61.111 0.00 0.00 45.71 4.52
1972 2032 2.194597 GGCGACCCCATATTGCCA 59.805 61.111 0.00 0.00 44.96 4.92
1973 2033 1.228552 GGCGACCCCATATTGCCAT 60.229 57.895 0.00 0.00 44.96 4.40
2005 2065 7.439356 ACAACTGATCGTTCTTCCACATATATG 59.561 37.037 11.29 11.29 32.27 1.78
2110 2175 4.923281 GCTTTTGAATAGAATTTGCCGTGT 59.077 37.500 0.00 0.00 0.00 4.49
2111 2176 5.164061 GCTTTTGAATAGAATTTGCCGTGTG 60.164 40.000 0.00 0.00 0.00 3.82
2112 2177 5.446143 TTTGAATAGAATTTGCCGTGTGT 57.554 34.783 0.00 0.00 0.00 3.72
2113 2178 4.678509 TGAATAGAATTTGCCGTGTGTC 57.321 40.909 0.00 0.00 0.00 3.67
2249 2314 7.778185 TCCCTCCATTATTAGCTTAGTAGAC 57.222 40.000 0.00 0.00 0.00 2.59
2277 2342 9.788960 ACTTAACTTTCTTTTAGCTTCTGTTTG 57.211 29.630 0.00 0.00 0.00 2.93
2472 2542 4.565236 GCTCATTATAGATGCTCCAAGGCT 60.565 45.833 0.00 0.00 0.00 4.58
2529 2606 4.941263 CCCAAACAGCTAGCACAAGTAATA 59.059 41.667 18.83 0.00 0.00 0.98
2562 2643 2.035321 CACACGCCATTAACTGGGTTTT 59.965 45.455 6.20 0.00 46.06 2.43
2670 2754 2.935651 GCTATTGCAGCGCTGTTTC 58.064 52.632 35.80 21.33 41.37 2.78
2671 2755 0.524180 GCTATTGCAGCGCTGTTTCC 60.524 55.000 35.80 20.97 41.37 3.13
2673 2757 1.063174 CTATTGCAGCGCTGTTTCCTC 59.937 52.381 35.80 19.88 0.00 3.71
2721 2805 6.558909 CATTTTTCTCATGAACTAGGCTTCC 58.441 40.000 0.00 0.00 31.02 3.46
2727 2811 0.178068 TGAACTAGGCTTCCGATGGC 59.822 55.000 0.00 0.00 0.00 4.40
2751 2835 2.592308 GGCGAGGCAAAGGAGGAT 59.408 61.111 0.00 0.00 0.00 3.24
2805 2889 0.458543 CGAGCACTTACACGATGGCT 60.459 55.000 0.00 0.00 0.00 4.75
2817 2901 3.138930 GATGGCTAGCGAGACGGCA 62.139 63.158 9.00 0.00 37.63 5.69
2877 2961 8.765219 ACGTTTCATTGATTCTAATAAGATCCG 58.235 33.333 0.00 0.00 0.00 4.18
2913 2997 8.057536 AGTAGTATCTAGCACATTATAGCCAC 57.942 38.462 0.00 0.00 0.00 5.01
2914 2998 7.891183 AGTAGTATCTAGCACATTATAGCCACT 59.109 37.037 0.00 0.00 0.00 4.00
2915 2999 7.164230 AGTATCTAGCACATTATAGCCACTC 57.836 40.000 0.00 0.00 0.00 3.51
2959 3068 0.522495 GTGTGTGTTTGTGTGTCGGC 60.522 55.000 0.00 0.00 0.00 5.54
2970 3079 2.289133 TGTGTGTCGGCTAAGCAATGTA 60.289 45.455 0.00 0.00 0.00 2.29
3005 3114 3.153369 TGCCACACCACTAAATCACAT 57.847 42.857 0.00 0.00 0.00 3.21
3027 3136 3.694734 TGTTGAAGCAAAAGCGAGAAAG 58.305 40.909 0.00 0.00 0.00 2.62
3168 3280 7.374272 AGGAACTTAGTAAAACGGAACTACTC 58.626 38.462 0.00 0.00 27.25 2.59
3169 3281 6.587990 GGAACTTAGTAAAACGGAACTACTCC 59.412 42.308 0.00 0.00 41.40 3.85
3170 3282 6.030548 ACTTAGTAAAACGGAACTACTCCC 57.969 41.667 0.00 0.00 41.87 4.30
3171 3283 5.777223 ACTTAGTAAAACGGAACTACTCCCT 59.223 40.000 0.00 0.00 41.87 4.20
3172 3284 4.797800 AGTAAAACGGAACTACTCCCTC 57.202 45.455 0.00 0.00 41.87 4.30
3173 3285 3.513119 AGTAAAACGGAACTACTCCCTCC 59.487 47.826 0.00 0.00 41.87 4.30
3175 3287 4.333417 CGGAACTACTCCCTCCGT 57.667 61.111 1.61 0.00 45.62 4.69
3176 3288 2.576298 CGGAACTACTCCCTCCGTT 58.424 57.895 1.61 0.00 45.62 4.44
3177 3289 0.455005 CGGAACTACTCCCTCCGTTC 59.545 60.000 1.61 0.00 45.62 3.95
3178 3290 0.822811 GGAACTACTCCCTCCGTTCC 59.177 60.000 4.51 4.51 45.79 3.62
3179 3291 1.849977 GAACTACTCCCTCCGTTCCT 58.150 55.000 0.00 0.00 31.89 3.36
3180 3292 3.010200 GAACTACTCCCTCCGTTCCTA 57.990 52.381 0.00 0.00 31.89 2.94
3181 3293 3.359950 GAACTACTCCCTCCGTTCCTAA 58.640 50.000 0.00 0.00 31.89 2.69
3182 3294 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3183 3295 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3184 3296 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3185 3297 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3186 3298 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3187 3299 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3188 3300 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3189 3301 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3190 3302 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3191 3303 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3192 3304 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3193 3305 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3194 3306 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3195 3307 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
3268 3380 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
3269 3381 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
3270 3382 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
3271 3383 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3272 3384 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3273 3385 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3274 3386 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3275 3387 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3276 3388 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3277 3389 4.323417 TCACTCATTTTGCTCCGTATGTT 58.677 39.130 0.00 0.00 0.00 2.71
3278 3390 4.154015 TCACTCATTTTGCTCCGTATGTTG 59.846 41.667 0.00 0.00 0.00 3.33
3279 3391 4.072131 ACTCATTTTGCTCCGTATGTTGT 58.928 39.130 0.00 0.00 0.00 3.32
3280 3392 4.154195 ACTCATTTTGCTCCGTATGTTGTC 59.846 41.667 0.00 0.00 0.00 3.18
3281 3393 4.068599 TCATTTTGCTCCGTATGTTGTCA 58.931 39.130 0.00 0.00 0.00 3.58
3282 3394 3.889196 TTTTGCTCCGTATGTTGTCAC 57.111 42.857 0.00 0.00 0.00 3.67
3283 3395 2.831685 TTGCTCCGTATGTTGTCACT 57.168 45.000 0.00 0.00 0.00 3.41
3284 3396 2.831685 TGCTCCGTATGTTGTCACTT 57.168 45.000 0.00 0.00 0.00 3.16
3285 3397 2.412870 TGCTCCGTATGTTGTCACTTG 58.587 47.619 0.00 0.00 0.00 3.16
3286 3398 2.224185 TGCTCCGTATGTTGTCACTTGT 60.224 45.455 0.00 0.00 0.00 3.16
3287 3399 2.806244 GCTCCGTATGTTGTCACTTGTT 59.194 45.455 0.00 0.00 0.00 2.83
3288 3400 3.363970 GCTCCGTATGTTGTCACTTGTTG 60.364 47.826 0.00 0.00 0.00 3.33
3289 3401 4.055360 CTCCGTATGTTGTCACTTGTTGA 58.945 43.478 0.00 0.00 0.00 3.18
3290 3402 4.443621 TCCGTATGTTGTCACTTGTTGAA 58.556 39.130 0.00 0.00 35.39 2.69
3291 3403 4.876679 TCCGTATGTTGTCACTTGTTGAAA 59.123 37.500 0.00 0.00 35.39 2.69
3292 3404 5.529430 TCCGTATGTTGTCACTTGTTGAAAT 59.471 36.000 0.00 0.00 35.39 2.17
3293 3405 5.851177 CCGTATGTTGTCACTTGTTGAAATC 59.149 40.000 0.00 0.00 35.39 2.17
3294 3406 6.293407 CCGTATGTTGTCACTTGTTGAAATCT 60.293 38.462 0.00 0.00 35.39 2.40
3295 3407 6.792250 CGTATGTTGTCACTTGTTGAAATCTC 59.208 38.462 0.00 0.00 35.39 2.75
3296 3408 6.949352 ATGTTGTCACTTGTTGAAATCTCT 57.051 33.333 0.00 0.00 35.39 3.10
3297 3409 8.988934 GTATGTTGTCACTTGTTGAAATCTCTA 58.011 33.333 0.00 0.00 35.39 2.43
3298 3410 7.482654 TGTTGTCACTTGTTGAAATCTCTAG 57.517 36.000 0.00 0.00 35.39 2.43
3299 3411 7.272244 TGTTGTCACTTGTTGAAATCTCTAGA 58.728 34.615 0.00 0.00 35.39 2.43
3300 3412 7.768582 TGTTGTCACTTGTTGAAATCTCTAGAA 59.231 33.333 0.00 0.00 35.39 2.10
3301 3413 8.612619 GTTGTCACTTGTTGAAATCTCTAGAAA 58.387 33.333 0.00 0.00 35.39 2.52
3302 3414 8.370493 TGTCACTTGTTGAAATCTCTAGAAAG 57.630 34.615 0.00 0.00 35.39 2.62
3303 3415 8.204160 TGTCACTTGTTGAAATCTCTAGAAAGA 58.796 33.333 0.00 0.00 35.39 2.52
3304 3416 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3305 3417 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3306 3418 8.494347 CACTTGTTGAAATCTCTAGAAAGACAG 58.506 37.037 0.00 0.00 0.00 3.51
3307 3419 8.424918 ACTTGTTGAAATCTCTAGAAAGACAGA 58.575 33.333 0.00 0.00 0.00 3.41
3308 3420 9.434420 CTTGTTGAAATCTCTAGAAAGACAGAT 57.566 33.333 0.00 0.00 0.00 2.90
3319 3431 9.672086 CTCTAGAAAGACAGATATTTAGGAACG 57.328 37.037 0.00 0.00 0.00 3.95
3320 3432 8.630917 TCTAGAAAGACAGATATTTAGGAACGG 58.369 37.037 0.00 0.00 0.00 4.44
3321 3433 7.419711 AGAAAGACAGATATTTAGGAACGGA 57.580 36.000 0.00 0.00 0.00 4.69
3322 3434 7.493367 AGAAAGACAGATATTTAGGAACGGAG 58.507 38.462 0.00 0.00 0.00 4.63
3323 3435 5.793030 AGACAGATATTTAGGAACGGAGG 57.207 43.478 0.00 0.00 0.00 4.30
3324 3436 4.589374 AGACAGATATTTAGGAACGGAGGG 59.411 45.833 0.00 0.00 0.00 4.30
3325 3437 4.553678 ACAGATATTTAGGAACGGAGGGA 58.446 43.478 0.00 0.00 0.00 4.20
3326 3438 4.589374 ACAGATATTTAGGAACGGAGGGAG 59.411 45.833 0.00 0.00 0.00 4.30
3327 3439 4.589374 CAGATATTTAGGAACGGAGGGAGT 59.411 45.833 0.00 0.00 0.00 3.85
3328 3440 5.773680 CAGATATTTAGGAACGGAGGGAGTA 59.226 44.000 0.00 0.00 0.00 2.59
3329 3441 6.437793 CAGATATTTAGGAACGGAGGGAGTAT 59.562 42.308 0.00 0.00 0.00 2.12
3330 3442 7.017531 AGATATTTAGGAACGGAGGGAGTATT 58.982 38.462 0.00 0.00 0.00 1.89
3342 3454 4.009675 GAGGGAGTATTTTGCACATGACA 58.990 43.478 0.00 0.00 0.00 3.58
3343 3455 3.758554 AGGGAGTATTTTGCACATGACAC 59.241 43.478 0.00 0.00 0.00 3.67
3352 3464 7.698836 ATTTTGCACATGACACTTAACTTTC 57.301 32.000 0.00 0.00 0.00 2.62
3363 3475 3.751175 CACTTAACTTTCCGATCCTTGCA 59.249 43.478 0.00 0.00 0.00 4.08
3392 3505 1.704628 TGATCCAAAGTCCAGCTCCAA 59.295 47.619 0.00 0.00 0.00 3.53
3401 3514 2.124819 CAGCTCCAAGCAGCGGAT 60.125 61.111 1.29 0.00 45.56 4.18
3402 3515 2.124819 AGCTCCAAGCAGCGGATG 60.125 61.111 1.29 0.00 45.56 3.51
3406 3519 1.364626 CTCCAAGCAGCGGATGTGAC 61.365 60.000 0.00 0.00 0.00 3.67
3427 3540 1.987770 GAAAGAACGCGGTGAATCGTA 59.012 47.619 12.47 0.00 38.03 3.43
3460 3573 0.672401 CCAAACAGTATCGGGCGTGT 60.672 55.000 0.00 0.00 0.00 4.49
3480 3593 7.005062 CGTGTAGCATTGCTCTTAGTAAAAT 57.995 36.000 15.81 0.00 40.44 1.82
3525 3744 2.480419 CCACAGTCCTTAAACTTGAGCG 59.520 50.000 0.00 0.00 0.00 5.03
3534 3753 0.381801 AAACTTGAGCGGTGCACTTG 59.618 50.000 17.98 10.97 0.00 3.16
3588 3809 1.341285 CCCCTGGTCTTTGCATCATCA 60.341 52.381 0.00 0.00 0.00 3.07
3628 3852 3.028850 GGGCTATTTTGGTCCCTAAACC 58.971 50.000 0.00 0.00 39.94 3.27
3711 3935 5.221803 GGACATGGATGATGACCTGAGTTAT 60.222 44.000 0.00 0.00 41.98 1.89
3712 3936 6.257994 ACATGGATGATGACCTGAGTTATT 57.742 37.500 0.00 0.00 35.80 1.40
3783 4007 8.034058 AGACTGTTCAGTAGCATATTTGTTTC 57.966 34.615 5.40 0.00 0.00 2.78
3786 4010 5.180304 TGTTCAGTAGCATATTTGTTTCGCA 59.820 36.000 0.00 0.00 0.00 5.10
3823 4047 4.944962 TCAACGAAGCATACTCATTTGG 57.055 40.909 0.00 0.00 0.00 3.28
3830 4054 4.443978 AGCATACTCATTTGGCCTATGT 57.556 40.909 3.32 0.00 0.00 2.29
3837 4061 5.025453 ACTCATTTGGCCTATGTTTCCATT 58.975 37.500 3.32 0.00 32.29 3.16
3865 4089 3.841255 CTCTAGAGGAAAAGAAGGGGTGT 59.159 47.826 12.27 0.00 0.00 4.16
3897 4121 1.380524 GATCGTCGAAGGGAGACAGA 58.619 55.000 0.00 0.00 38.46 3.41
3918 4144 4.536090 AGATTGGTGACTTATGGACTGGAA 59.464 41.667 0.00 0.00 0.00 3.53
3928 4154 5.664908 ACTTATGGACTGGAATGTCAGAGAT 59.335 40.000 2.98 0.00 38.61 2.75
4089 4315 5.402270 GTCATTGAATACCTGCACAAACAAC 59.598 40.000 0.00 0.00 0.00 3.32
4290 4519 9.579932 AGATTCAATAATATGGAAAAGAGACCC 57.420 33.333 0.00 0.00 0.00 4.46
4296 4525 2.045242 GAAAAGAGACCCCGGGGC 60.045 66.667 40.67 30.40 39.32 5.80
4333 4562 2.099921 GTGGCTTCTCTCGAGATAGCAA 59.900 50.000 32.94 26.30 40.27 3.91
4384 4613 3.031812 GAGCAATTGATAGAAAAGCGCG 58.968 45.455 10.34 0.00 0.00 6.86
4491 4720 4.021229 ACTATTACTCCACACATCGACCA 58.979 43.478 0.00 0.00 0.00 4.02
4521 4750 6.589523 CCAGCATGCATCTAGAGTATTAAGTC 59.410 42.308 21.98 0.00 31.97 3.01
4652 4881 2.439156 CCTTGCTGCCCCTACTGC 60.439 66.667 0.00 0.00 35.29 4.40
4700 4929 3.229697 ACCCAAAGCTAAGCACTTCTT 57.770 42.857 0.00 0.00 38.79 2.52
4754 4983 7.810759 GCCAAACTAAACCAATAATTCGAAGAA 59.189 33.333 3.35 0.00 45.90 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.125578 TGCTCTAGATCGTTTCACATGTAGT 59.874 40.000 0.00 0.00 0.00 2.73
1 2 5.457148 GTGCTCTAGATCGTTTCACATGTAG 59.543 44.000 0.00 0.00 0.00 2.74
4 5 4.032217 GTGTGCTCTAGATCGTTTCACATG 59.968 45.833 11.74 0.00 35.75 3.21
13 14 0.248661 CCCACGTGTGCTCTAGATCG 60.249 60.000 15.65 0.00 0.00 3.69
15 16 0.614979 ACCCCACGTGTGCTCTAGAT 60.615 55.000 15.65 0.00 0.00 1.98
17 18 1.079819 CACCCCACGTGTGCTCTAG 60.080 63.158 15.65 0.00 37.73 2.43
32 33 4.172625 TGACACCAACATGGCACC 57.827 55.556 0.00 0.00 42.67 5.01
39 40 1.590525 GAGACGCGTGACACCAACA 60.591 57.895 20.70 0.00 0.00 3.33
40 41 2.645510 CGAGACGCGTGACACCAAC 61.646 63.158 20.70 0.00 34.64 3.77
42 43 2.137425 AATCGAGACGCGTGACACCA 62.137 55.000 20.70 0.00 41.80 4.17
49 50 0.595053 CATAGCCAATCGAGACGCGT 60.595 55.000 13.85 13.85 41.80 6.01
66 68 3.702045 GAGGGAGTGAAGTGCTACTACAT 59.298 47.826 0.00 0.00 29.01 2.29
70 72 2.614134 AGAGGGAGTGAAGTGCTACT 57.386 50.000 0.00 0.00 0.00 2.57
87 89 3.457749 TGGGTACATGATGTGGCATAAGA 59.542 43.478 8.61 0.00 0.00 2.10
95 97 5.003160 TCTCAAACTTGGGTACATGATGTG 58.997 41.667 8.61 0.00 0.00 3.21
170 173 8.872845 CATGATTAAAAAGGAGTAAATTGCACC 58.127 33.333 0.00 0.00 0.00 5.01
211 214 1.512230 CCACCATGAATTGTGGCGG 59.488 57.895 6.00 3.39 44.98 6.13
270 273 2.918712 AGGAGACAGTGTGTTCCAAG 57.081 50.000 20.16 0.00 33.18 3.61
283 287 4.453819 CACCTCATGTTTCTTGAAGGAGAC 59.546 45.833 0.17 0.00 0.00 3.36
301 305 1.804151 TCTAAAATGTGCGCACACCTC 59.196 47.619 42.74 17.04 46.86 3.85
375 382 9.646427 CTCTCAATTCTTTTTGCTACTACTACT 57.354 33.333 0.00 0.00 0.00 2.57
381 388 9.598517 CTATCTCTCTCAATTCTTTTTGCTACT 57.401 33.333 0.00 0.00 0.00 2.57
382 389 9.593134 TCTATCTCTCTCAATTCTTTTTGCTAC 57.407 33.333 0.00 0.00 0.00 3.58
392 403 8.109705 TGCTATCACTCTATCTCTCTCAATTC 57.890 38.462 0.00 0.00 0.00 2.17
394 405 8.476064 TTTGCTATCACTCTATCTCTCTCAAT 57.524 34.615 0.00 0.00 0.00 2.57
453 475 7.201644 CGACCGGTCTTAATACTAGTACAAGAA 60.202 40.741 30.92 8.20 0.00 2.52
459 481 4.273480 GCACGACCGGTCTTAATACTAGTA 59.727 45.833 30.92 4.77 0.00 1.82
460 482 3.065925 GCACGACCGGTCTTAATACTAGT 59.934 47.826 30.92 15.69 0.00 2.57
461 483 3.314635 AGCACGACCGGTCTTAATACTAG 59.685 47.826 30.92 15.03 0.00 2.57
462 484 3.282021 AGCACGACCGGTCTTAATACTA 58.718 45.455 30.92 0.00 0.00 1.82
463 485 2.097825 AGCACGACCGGTCTTAATACT 58.902 47.619 30.92 16.43 0.00 2.12
464 486 2.573941 AGCACGACCGGTCTTAATAC 57.426 50.000 30.92 14.55 0.00 1.89
471 494 1.209128 CATGATTAGCACGACCGGTC 58.791 55.000 25.28 25.28 0.00 4.79
473 496 1.498865 GCCATGATTAGCACGACCGG 61.499 60.000 0.00 0.00 0.00 5.28
610 633 1.549950 GGAAATCCTTGGACCCTTGCA 60.550 52.381 0.00 0.00 0.00 4.08
623 646 1.941325 CAGTGACGCTAGGGAAATCC 58.059 55.000 14.59 0.00 0.00 3.01
637 660 1.374631 GCACGTCCTCATGCAGTGA 60.375 57.895 4.35 2.07 41.65 3.41
736 759 7.202016 TCGTTGATGGGATTAGAATATTTGC 57.798 36.000 0.00 0.00 0.00 3.68
845 874 2.279073 CGGAGGGGGCTCTGACTA 59.721 66.667 0.00 0.00 31.63 2.59
867 907 2.100410 GAGCACGAGCACGATCGA 59.900 61.111 24.34 0.00 45.56 3.59
876 916 1.081175 TGAAGAGCACGAGCACGAG 60.081 57.895 11.40 3.06 45.49 4.18
889 929 1.007734 GTGACGCGGTGAGTGAAGA 60.008 57.895 12.47 0.00 0.00 2.87
897 937 3.041940 GACTTGGGTGACGCGGTG 61.042 66.667 12.47 0.00 0.00 4.94
898 938 4.309950 GGACTTGGGTGACGCGGT 62.310 66.667 12.47 0.00 0.00 5.68
899 939 4.308458 TGGACTTGGGTGACGCGG 62.308 66.667 12.47 0.00 0.00 6.46
900 940 3.041940 GTGGACTTGGGTGACGCG 61.042 66.667 3.53 3.53 0.00 6.01
901 941 1.668151 GAGTGGACTTGGGTGACGC 60.668 63.158 0.00 0.00 0.00 5.19
902 942 1.004918 GGAGTGGACTTGGGTGACG 60.005 63.158 0.00 0.00 0.00 4.35
903 943 1.375326 GGGAGTGGACTTGGGTGAC 59.625 63.158 0.00 0.00 0.00 3.67
904 944 1.846124 GGGGAGTGGACTTGGGTGA 60.846 63.158 0.00 0.00 0.00 4.02
905 945 2.129555 CTGGGGAGTGGACTTGGGTG 62.130 65.000 0.00 0.00 0.00 4.61
906 946 1.847968 CTGGGGAGTGGACTTGGGT 60.848 63.158 0.00 0.00 0.00 4.51
907 947 3.081554 CTGGGGAGTGGACTTGGG 58.918 66.667 0.00 0.00 0.00 4.12
908 948 2.352805 GCTGGGGAGTGGACTTGG 59.647 66.667 0.00 0.00 0.00 3.61
909 949 2.352805 GGCTGGGGAGTGGACTTG 59.647 66.667 0.00 0.00 0.00 3.16
910 950 2.121963 TGGCTGGGGAGTGGACTT 60.122 61.111 0.00 0.00 0.00 3.01
911 951 2.106923 TACTGGCTGGGGAGTGGACT 62.107 60.000 0.00 0.00 0.00 3.85
912 952 1.612442 TACTGGCTGGGGAGTGGAC 60.612 63.158 0.00 0.00 0.00 4.02
913 953 1.612442 GTACTGGCTGGGGAGTGGA 60.612 63.158 0.00 0.00 0.00 4.02
914 954 1.613630 AGTACTGGCTGGGGAGTGG 60.614 63.158 0.00 0.00 0.00 4.00
915 955 1.194781 ACAGTACTGGCTGGGGAGTG 61.195 60.000 26.12 0.00 40.59 3.51
916 956 0.905337 GACAGTACTGGCTGGGGAGT 60.905 60.000 26.12 2.07 40.59 3.85
917 957 1.617947 GGACAGTACTGGCTGGGGAG 61.618 65.000 27.55 0.00 40.59 4.30
918 958 1.612442 GGACAGTACTGGCTGGGGA 60.612 63.158 27.55 0.00 40.59 4.81
976 1020 1.618343 GTGGAGGGAAACAACCAATGG 59.382 52.381 0.00 0.00 38.44 3.16
982 1026 2.501261 GGTGTAGTGGAGGGAAACAAC 58.499 52.381 0.00 0.00 0.00 3.32
1004 1048 4.467084 TCAATCGGTCGCCTGGGC 62.467 66.667 0.82 0.82 37.85 5.36
1005 1049 2.032860 ATCTCAATCGGTCGCCTGGG 62.033 60.000 0.00 0.00 0.00 4.45
1006 1050 0.877649 CATCTCAATCGGTCGCCTGG 60.878 60.000 0.00 0.00 0.00 4.45
1007 1051 0.877649 CCATCTCAATCGGTCGCCTG 60.878 60.000 0.00 0.00 0.00 4.85
1008 1052 1.443407 CCATCTCAATCGGTCGCCT 59.557 57.895 0.00 0.00 0.00 5.52
1009 1053 2.247437 GCCATCTCAATCGGTCGCC 61.247 63.158 0.00 0.00 0.00 5.54
1010 1054 2.589492 CGCCATCTCAATCGGTCGC 61.589 63.158 0.00 0.00 0.00 5.19
1014 1058 1.301244 CCTCCGCCATCTCAATCGG 60.301 63.158 0.00 0.00 42.96 4.18
1114 1158 1.696097 CCCCGAACTCATCCCCGAAT 61.696 60.000 0.00 0.00 0.00 3.34
1181 1231 0.471191 AATCCATCTGCGGATCAGCA 59.529 50.000 19.59 19.59 45.39 4.41
1256 1309 1.087501 GAAATGGAGACGAGGGTTGC 58.912 55.000 0.00 0.00 0.00 4.17
1259 1312 0.974383 AACGAAATGGAGACGAGGGT 59.026 50.000 0.00 0.00 0.00 4.34
1261 1314 1.993370 GTCAACGAAATGGAGACGAGG 59.007 52.381 0.00 0.00 0.00 4.63
1262 1315 2.917971 GAGTCAACGAAATGGAGACGAG 59.082 50.000 0.00 0.00 34.56 4.18
1263 1316 2.352421 GGAGTCAACGAAATGGAGACGA 60.352 50.000 0.00 0.00 34.56 4.20
1285 1338 6.075984 TCAGAGGGGTATCATTAAGGACTAC 58.924 44.000 0.00 0.00 0.00 2.73
1302 1356 2.500229 GAGACCGAGATACTCAGAGGG 58.500 57.143 1.53 0.00 0.00 4.30
1343 1399 2.590092 CCCCTGCCCCTACTTTCG 59.410 66.667 0.00 0.00 0.00 3.46
1593 1649 0.610232 AATCTGGGAACTGGTGCTGC 60.610 55.000 0.00 0.00 0.00 5.25
1596 1652 2.206576 AGAAATCTGGGAACTGGTGC 57.793 50.000 0.00 0.00 0.00 5.01
1725 1785 6.721571 GCAAAGTGCAATCAGTAAGTAGTA 57.278 37.500 0.00 0.00 44.26 1.82
1740 1800 0.318107 ACTTCATGCGTGCAAAGTGC 60.318 50.000 11.17 0.00 45.29 4.40
1741 1801 2.124011 AACTTCATGCGTGCAAAGTG 57.876 45.000 12.35 0.80 30.30 3.16
1742 1802 3.501828 TCATAACTTCATGCGTGCAAAGT 59.498 39.130 7.09 7.09 30.86 2.66
1743 1803 4.082274 TCATAACTTCATGCGTGCAAAG 57.918 40.909 0.00 3.39 0.00 2.77
1744 1804 4.155644 TCATCATAACTTCATGCGTGCAAA 59.844 37.500 0.00 0.00 0.00 3.68
1745 1805 3.688673 TCATCATAACTTCATGCGTGCAA 59.311 39.130 0.00 0.00 0.00 4.08
1746 1806 3.269178 TCATCATAACTTCATGCGTGCA 58.731 40.909 0.00 0.00 0.00 4.57
1747 1807 3.950087 TCATCATAACTTCATGCGTGC 57.050 42.857 0.00 0.00 0.00 5.34
1748 1808 5.475273 AGTTCATCATAACTTCATGCGTG 57.525 39.130 0.00 0.00 36.26 5.34
1749 1809 5.755375 CCTAGTTCATCATAACTTCATGCGT 59.245 40.000 0.00 0.00 40.20 5.24
1750 1810 5.178252 CCCTAGTTCATCATAACTTCATGCG 59.822 44.000 0.00 0.00 40.20 4.73
1751 1811 6.058183 ACCCTAGTTCATCATAACTTCATGC 58.942 40.000 0.00 0.00 40.20 4.06
1916 1976 0.673644 CCTTGAAAGTCGGCATCGGT 60.674 55.000 0.00 0.00 36.95 4.69
1968 2028 5.784578 ACGATCAGTTGTACTATATGGCA 57.215 39.130 0.00 0.00 0.00 4.92
1969 2029 6.448006 AGAACGATCAGTTGTACTATATGGC 58.552 40.000 7.51 0.00 44.35 4.40
1970 2030 7.595502 GGAAGAACGATCAGTTGTACTATATGG 59.404 40.741 7.51 0.00 44.35 2.74
1971 2031 8.135529 TGGAAGAACGATCAGTTGTACTATATG 58.864 37.037 7.51 0.00 44.35 1.78
1972 2032 8.136165 GTGGAAGAACGATCAGTTGTACTATAT 58.864 37.037 7.51 0.00 44.35 0.86
1973 2033 7.121611 TGTGGAAGAACGATCAGTTGTACTATA 59.878 37.037 7.51 0.00 44.35 1.31
2032 2092 2.100418 CGATCACTTGATGCCAGAGAGA 59.900 50.000 0.00 0.00 34.37 3.10
2040 2100 4.091220 GCTTATAGCTCGATCACTTGATGC 59.909 45.833 0.00 0.00 38.45 3.91
2113 2178 0.397941 TTTCCTCACCTGCCAGACAG 59.602 55.000 0.00 0.00 46.77 3.51
2266 2331 7.493971 CAGAGCAATATAGTACAAACAGAAGCT 59.506 37.037 0.00 0.00 0.00 3.74
2300 2365 4.819088 TGCAAATACTCAGCAACTTACACA 59.181 37.500 0.00 0.00 34.97 3.72
2301 2366 5.147162 GTGCAAATACTCAGCAACTTACAC 58.853 41.667 0.00 0.00 40.35 2.90
2529 2606 1.545136 TGGCGTGTGCATCATGAAAAT 59.455 42.857 0.00 0.00 45.35 1.82
2562 2643 1.897802 TGAGAGACTGCATGCAGAGAA 59.102 47.619 45.50 24.66 46.30 2.87
2670 2754 8.404000 CAATTCATAAGTGAGAGGAAATTGAGG 58.596 37.037 0.00 0.00 35.39 3.86
2671 2755 7.914346 GCAATTCATAAGTGAGAGGAAATTGAG 59.086 37.037 8.27 0.00 35.39 3.02
2673 2757 7.541162 TGCAATTCATAAGTGAGAGGAAATTG 58.459 34.615 0.00 0.00 35.39 2.32
2742 2826 1.524482 GCTCCGCAGATCCTCCTTT 59.476 57.895 0.00 0.00 0.00 3.11
2805 2889 4.129737 GGTGCTGCCGTCTCGCTA 62.130 66.667 0.00 0.00 0.00 4.26
2817 2901 3.241530 TGCCAGAACTCCGGTGCT 61.242 61.111 0.00 0.00 0.00 4.40
2877 2961 6.858993 GTGCTAGATACTACTTGCATGTCTAC 59.141 42.308 8.74 0.00 46.02 2.59
2938 3027 1.400142 CCGACACACAAACACACACAT 59.600 47.619 0.00 0.00 0.00 3.21
2959 3068 7.436933 TGAGACCATGAGTATACATTGCTTAG 58.563 38.462 5.50 0.00 0.00 2.18
3005 3114 3.773860 TTCTCGCTTTTGCTTCAACAA 57.226 38.095 0.00 0.00 44.80 2.83
3027 3136 7.361315 GCACATTGCTGATTGCTTAAAAGCC 62.361 44.000 11.96 0.00 45.12 4.35
3081 3193 4.083802 CCGCTCTTCAGTTTTTCTTCGATT 60.084 41.667 0.00 0.00 0.00 3.34
3168 3280 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3169 3281 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3242 3354 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
3243 3355 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
3244 3356 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
3245 3357 7.192232 GGAGCAAAATGAGTGAATCTACATTC 58.808 38.462 0.00 0.00 39.24 2.67
3246 3358 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
3247 3359 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
3248 3360 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3249 3361 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3250 3362 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3251 3363 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3252 3364 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3253 3365 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3254 3366 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3255 3367 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3256 3368 4.083324 ACAACATACGGAGCAAAATGAGTG 60.083 41.667 0.00 0.00 0.00 3.51
3257 3369 4.072131 ACAACATACGGAGCAAAATGAGT 58.928 39.130 0.00 0.00 0.00 3.41
3258 3370 4.154015 TGACAACATACGGAGCAAAATGAG 59.846 41.667 0.00 0.00 0.00 2.90
3259 3371 4.068599 TGACAACATACGGAGCAAAATGA 58.931 39.130 0.00 0.00 0.00 2.57
3260 3372 4.083324 AGTGACAACATACGGAGCAAAATG 60.083 41.667 0.00 0.00 0.00 2.32
3261 3373 4.072131 AGTGACAACATACGGAGCAAAAT 58.928 39.130 0.00 0.00 0.00 1.82
3262 3374 3.472652 AGTGACAACATACGGAGCAAAA 58.527 40.909 0.00 0.00 0.00 2.44
3263 3375 3.120321 AGTGACAACATACGGAGCAAA 57.880 42.857 0.00 0.00 0.00 3.68
3264 3376 2.805671 CAAGTGACAACATACGGAGCAA 59.194 45.455 0.00 0.00 0.00 3.91
3265 3377 2.224185 ACAAGTGACAACATACGGAGCA 60.224 45.455 0.00 0.00 0.00 4.26
3266 3378 2.413837 ACAAGTGACAACATACGGAGC 58.586 47.619 0.00 0.00 0.00 4.70
3267 3379 4.055360 TCAACAAGTGACAACATACGGAG 58.945 43.478 0.00 0.00 0.00 4.63
3268 3380 4.061357 TCAACAAGTGACAACATACGGA 57.939 40.909 0.00 0.00 0.00 4.69
3269 3381 4.804608 TTCAACAAGTGACAACATACGG 57.195 40.909 0.00 0.00 35.39 4.02
3270 3382 6.658831 AGATTTCAACAAGTGACAACATACG 58.341 36.000 0.00 0.00 35.39 3.06
3271 3383 7.865707 AGAGATTTCAACAAGTGACAACATAC 58.134 34.615 0.00 0.00 35.39 2.39
3272 3384 9.208022 CTAGAGATTTCAACAAGTGACAACATA 57.792 33.333 0.00 0.00 35.39 2.29
3273 3385 6.949352 AGAGATTTCAACAAGTGACAACAT 57.051 33.333 0.00 0.00 35.39 2.71
3274 3386 7.272244 TCTAGAGATTTCAACAAGTGACAACA 58.728 34.615 0.00 0.00 35.39 3.33
3275 3387 7.715265 TCTAGAGATTTCAACAAGTGACAAC 57.285 36.000 0.00 0.00 35.39 3.32
3276 3388 8.731275 TTTCTAGAGATTTCAACAAGTGACAA 57.269 30.769 0.00 0.00 35.39 3.18
3277 3389 8.204160 TCTTTCTAGAGATTTCAACAAGTGACA 58.796 33.333 0.00 0.00 35.39 3.58
3278 3390 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3279 3391 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3280 3392 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3281 3393 8.424918 TCTGTCTTTCTAGAGATTTCAACAAGT 58.575 33.333 0.00 0.00 0.00 3.16
3282 3394 8.824159 TCTGTCTTTCTAGAGATTTCAACAAG 57.176 34.615 0.00 0.00 0.00 3.16
3293 3405 9.672086 CGTTCCTAAATATCTGTCTTTCTAGAG 57.328 37.037 0.00 0.00 0.00 2.43
3294 3406 8.630917 CCGTTCCTAAATATCTGTCTTTCTAGA 58.369 37.037 0.00 0.00 0.00 2.43
3295 3407 8.630917 TCCGTTCCTAAATATCTGTCTTTCTAG 58.369 37.037 0.00 0.00 0.00 2.43
3296 3408 8.529424 TCCGTTCCTAAATATCTGTCTTTCTA 57.471 34.615 0.00 0.00 0.00 2.10
3297 3409 7.418025 CCTCCGTTCCTAAATATCTGTCTTTCT 60.418 40.741 0.00 0.00 0.00 2.52
3298 3410 6.702282 CCTCCGTTCCTAAATATCTGTCTTTC 59.298 42.308 0.00 0.00 0.00 2.62
3299 3411 6.408206 CCCTCCGTTCCTAAATATCTGTCTTT 60.408 42.308 0.00 0.00 0.00 2.52
3300 3412 5.070580 CCCTCCGTTCCTAAATATCTGTCTT 59.929 44.000 0.00 0.00 0.00 3.01
3301 3413 4.589374 CCCTCCGTTCCTAAATATCTGTCT 59.411 45.833 0.00 0.00 0.00 3.41
3302 3414 4.587684 TCCCTCCGTTCCTAAATATCTGTC 59.412 45.833 0.00 0.00 0.00 3.51
3303 3415 4.553678 TCCCTCCGTTCCTAAATATCTGT 58.446 43.478 0.00 0.00 0.00 3.41
3304 3416 4.589374 ACTCCCTCCGTTCCTAAATATCTG 59.411 45.833 0.00 0.00 0.00 2.90
3305 3417 4.817286 ACTCCCTCCGTTCCTAAATATCT 58.183 43.478 0.00 0.00 0.00 1.98
3306 3418 6.854091 ATACTCCCTCCGTTCCTAAATATC 57.146 41.667 0.00 0.00 0.00 1.63
3307 3419 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
3308 3420 7.277396 CAAAATACTCCCTCCGTTCCTAAATA 58.723 38.462 0.00 0.00 0.00 1.40
3309 3421 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
3310 3422 5.493809 CAAAATACTCCCTCCGTTCCTAAA 58.506 41.667 0.00 0.00 0.00 1.85
3311 3423 4.624604 GCAAAATACTCCCTCCGTTCCTAA 60.625 45.833 0.00 0.00 0.00 2.69
3312 3424 3.118519 GCAAAATACTCCCTCCGTTCCTA 60.119 47.826 0.00 0.00 0.00 2.94
3313 3425 2.355818 GCAAAATACTCCCTCCGTTCCT 60.356 50.000 0.00 0.00 0.00 3.36
3314 3426 2.014857 GCAAAATACTCCCTCCGTTCC 58.985 52.381 0.00 0.00 0.00 3.62
3315 3427 2.418976 GTGCAAAATACTCCCTCCGTTC 59.581 50.000 0.00 0.00 0.00 3.95
3316 3428 2.224670 TGTGCAAAATACTCCCTCCGTT 60.225 45.455 0.00 0.00 0.00 4.44
3317 3429 1.349688 TGTGCAAAATACTCCCTCCGT 59.650 47.619 0.00 0.00 0.00 4.69
3318 3430 2.107950 TGTGCAAAATACTCCCTCCG 57.892 50.000 0.00 0.00 0.00 4.63
3319 3431 3.378427 GTCATGTGCAAAATACTCCCTCC 59.622 47.826 0.00 0.00 0.00 4.30
3320 3432 4.009675 TGTCATGTGCAAAATACTCCCTC 58.990 43.478 0.00 0.00 0.00 4.30
3321 3433 3.758554 GTGTCATGTGCAAAATACTCCCT 59.241 43.478 0.00 0.00 0.00 4.20
3322 3434 3.758554 AGTGTCATGTGCAAAATACTCCC 59.241 43.478 0.00 0.00 0.00 4.30
3323 3435 5.376854 AAGTGTCATGTGCAAAATACTCC 57.623 39.130 0.00 0.00 0.00 3.85
3324 3436 7.584987 AGTTAAGTGTCATGTGCAAAATACTC 58.415 34.615 0.00 0.00 0.00 2.59
3325 3437 7.510549 AGTTAAGTGTCATGTGCAAAATACT 57.489 32.000 0.00 0.00 0.00 2.12
3326 3438 8.574196 AAAGTTAAGTGTCATGTGCAAAATAC 57.426 30.769 0.00 0.00 0.00 1.89
3327 3439 7.865385 GGAAAGTTAAGTGTCATGTGCAAAATA 59.135 33.333 2.88 0.00 0.00 1.40
3328 3440 6.701400 GGAAAGTTAAGTGTCATGTGCAAAAT 59.299 34.615 2.88 0.00 0.00 1.82
3329 3441 6.039616 GGAAAGTTAAGTGTCATGTGCAAAA 58.960 36.000 2.88 0.00 0.00 2.44
3330 3442 5.587289 GGAAAGTTAAGTGTCATGTGCAAA 58.413 37.500 2.88 0.00 0.00 3.68
3342 3454 4.015872 TGCAAGGATCGGAAAGTTAAGT 57.984 40.909 0.00 0.00 0.00 2.24
3343 3455 4.669197 CGTTGCAAGGATCGGAAAGTTAAG 60.669 45.833 13.85 0.00 0.00 1.85
3352 3464 1.368641 TCAATCGTTGCAAGGATCGG 58.631 50.000 29.14 23.84 32.82 4.18
3363 3475 4.588899 TGGACTTTGGATCATCAATCGTT 58.411 39.130 0.00 0.00 34.99 3.85
3392 3505 1.005037 TTTCGTCACATCCGCTGCT 60.005 52.632 0.00 0.00 0.00 4.24
3401 3514 1.227031 ACCGCGTTCTTTCGTCACA 60.227 52.632 4.92 0.00 0.00 3.58
3402 3515 1.200839 CACCGCGTTCTTTCGTCAC 59.799 57.895 4.92 0.00 0.00 3.67
3406 3519 0.246757 CGATTCACCGCGTTCTTTCG 60.247 55.000 4.92 4.43 0.00 3.46
3427 3540 8.814235 CGATACTGTTTGGACGATTTTTATACT 58.186 33.333 0.00 0.00 0.00 2.12
3460 3573 7.572523 ATGCATTTTACTAAGAGCAATGCTA 57.427 32.000 8.12 0.00 46.53 3.49
3490 3603 6.560003 AGGACTGTGGATATAATTCACACA 57.440 37.500 0.00 0.00 39.49 3.72
3491 3604 8.958119 TTAAGGACTGTGGATATAATTCACAC 57.042 34.615 0.00 0.00 36.61 3.82
3505 3618 2.480419 CCGCTCAAGTTTAAGGACTGTG 59.520 50.000 0.00 0.00 0.00 3.66
3506 3619 2.104281 ACCGCTCAAGTTTAAGGACTGT 59.896 45.455 0.00 0.00 0.00 3.55
3509 3622 1.197036 GCACCGCTCAAGTTTAAGGAC 59.803 52.381 0.00 0.00 0.00 3.85
3545 3764 1.712056 AACCCCCTTTCGGAAAAAGG 58.288 50.000 9.18 9.18 44.90 3.11
3546 3765 4.501915 GGTTTAACCCCCTTTCGGAAAAAG 60.502 45.833 2.04 0.00 30.04 2.27
3575 3796 3.054213 TGAGGACCATGATGATGCAAAGA 60.054 43.478 0.00 0.00 0.00 2.52
3578 3799 3.369242 TTGAGGACCATGATGATGCAA 57.631 42.857 0.00 0.00 0.00 4.08
3588 3809 3.500343 CCCTTTTGAGTTTGAGGACCAT 58.500 45.455 0.00 0.00 0.00 3.55
3651 3875 6.347696 AGTTGCCAAAAAGATTGTGATTTCA 58.652 32.000 0.00 0.00 0.00 2.69
3727 3951 1.214305 AACTTGCTCCCCCTGGCATA 61.214 55.000 0.00 0.00 38.30 3.14
3783 4007 1.994779 GAACAATGAGGGCAAAATGCG 59.005 47.619 0.00 0.00 46.21 4.73
3786 4010 3.320541 TCGTTGAACAATGAGGGCAAAAT 59.679 39.130 5.50 0.00 32.92 1.82
3830 4054 9.672673 CTTTTCCTCTAGAGTTCATAATGGAAA 57.327 33.333 18.42 14.25 38.68 3.13
3837 4061 6.384305 CCCCTTCTTTTCCTCTAGAGTTCATA 59.616 42.308 18.42 0.00 0.00 2.15
3865 4089 1.535444 ACGATCCCCAGTGTCACCA 60.535 57.895 0.00 0.00 0.00 4.17
3873 4097 1.739338 CTCCCTTCGACGATCCCCAG 61.739 65.000 0.00 0.00 0.00 4.45
3876 4100 1.035932 TGTCTCCCTTCGACGATCCC 61.036 60.000 0.00 0.00 34.17 3.85
3897 4121 4.927267 TTCCAGTCCATAAGTCACCAAT 57.073 40.909 0.00 0.00 0.00 3.16
3918 4144 3.421394 TTCCCCACCTATCTCTGACAT 57.579 47.619 0.00 0.00 0.00 3.06
3928 4154 2.249214 AGGTAGCAGTATTCCCCACCTA 59.751 50.000 0.00 0.00 33.23 3.08
4031 4257 5.598830 GTCTCCTACTGGATTGATACCTTGA 59.401 44.000 0.00 0.00 42.29 3.02
4089 4315 3.663995 TCATGTTGGTTGCATTCTTGG 57.336 42.857 0.00 0.00 0.00 3.61
4290 4519 2.194868 GAAACCTATGGGCCCCGG 59.805 66.667 22.27 19.56 35.63 5.73
4296 4525 2.505819 AGCCACTAGTGAAACCTATGGG 59.494 50.000 24.68 4.31 37.80 4.00
4333 4562 3.637911 TTGCTCACCCACCGTAATATT 57.362 42.857 0.00 0.00 0.00 1.28
4491 4720 4.158786 ACTCTAGATGCATGCTGGATAGT 58.841 43.478 20.33 12.07 0.00 2.12
4521 4750 6.737254 AATGTGTTACTCCGTTCTTTATGG 57.263 37.500 0.00 0.00 0.00 2.74
4652 4881 1.302511 CGGTGTCCTTTCCCAGTGG 60.303 63.158 0.63 0.63 0.00 4.00
4675 4904 2.623416 AGTGCTTAGCTTTGGGTTCAAC 59.377 45.455 5.60 0.00 31.78 3.18
4700 4929 7.114754 ACTAGATTGATCTTTCTTGCAATGGA 58.885 34.615 0.00 0.00 38.32 3.41
4754 4983 7.324935 TGCATGATTTGATATCTTTGCAAGTT 58.675 30.769 3.98 0.00 36.08 2.66
4838 5067 3.744238 TTGCCGAGATCCGATGAATTA 57.256 42.857 5.32 0.00 41.76 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.