AutoCloner

Multiple sequence alignment - TraesCS1B01G331600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G331600	chr1B	100.000	2426	0	0	1	2426	557464418	557461993	0.000000e+00	4481.0
1	TraesCS1B01G331600	chr1B	86.809	1410	165	13	17	1412	557412413	557411011	0.000000e+00	1554.0
2	TraesCS1B01G331600	chr1B	80.000	140	18	3	1609	1739	557543839	557543701	7.140000e-16	95.3
3	TraesCS1B01G331600	chr1A	86.348	1714	197	20	1	1690	510354300	510352600	0.000000e+00	1834.0
4	TraesCS1B01G331600	chr1A	84.300	1414	196	19	14	1409	510343198	510341793	0.000000e+00	1358.0
5	TraesCS1B01G331600	chr1A	76.730	954	113	57	1468	2373	510363880	510362988	4.790000e-117	431.0
6	TraesCS1B01G331600	chr1A	87.640	356	18	9	2044	2373	510352159	510351804	8.130000e-105	390.0
7	TraesCS1B01G331600	chr1A	88.636	88	8	2	1779	1865	512453077	512452991	3.300000e-19	106.0
8	TraesCS1B01G331600	chr4B	93.058	1138	50	9	1264	2374	559852468	559851333	0.000000e+00	1637.0
9	TraesCS1B01G331600	chr1D	86.139	1414	179	9	17	1420	413234473	413233067	0.000000e+00	1509.0
10	TraesCS1B01G331600	chr1D	85.807	1381	176	15	3	1373	413224946	413226316	0.000000e+00	1447.0
11	TraesCS1B01G331600	chr1D	91.805	842	56	4	460	1299	413359812	413358982	0.000000e+00	1160.0
12	TraesCS1B01G331600	chr1D	89.017	692	47	17	812	1490	413297941	413297266	0.000000e+00	830.0
13	TraesCS1B01G331600	chr1D	93.348	466	30	1	1	466	413373728	413373264	0.000000e+00	688.0
14	TraesCS1B01G331600	chr1D	94.159	428	24	1	1034	1461	413315820	413315394	0.000000e+00	651.0
15	TraesCS1B01G331600	chr1D	81.212	660	88	23	396	1042	413319369	413318733	1.300000e-137	499.0
16	TraesCS1B01G331600	chr1D	87.253	455	32	6	1942	2374	413296151	413295701	1.680000e-136	496.0
17	TraesCS1B01G331600	chr1D	89.941	338	17	8	1488	1812	413315400	413315067	1.040000e-113	420.0
18	TraesCS1B01G331600	chr1D	88.889	180	7	4	1529	1697	413297266	413297089	2.440000e-50	209.0
19	TraesCS1B01G331600	chr1D	80.738	244	33	8	4	244	413319644	413319412	6.890000e-41	178.0
20	TraesCS1B01G331600	chr1D	93.333	105	7	0	1637	1741	413357408	413357304	3.230000e-34	156.0
21	TraesCS1B01G331600	chr1D	72.305	538	89	31	1893	2374	413334779	413334246	1.970000e-21	113.0
22	TraesCS1B01G331600	chr1D	89.412	85	5	3	1	82	413298217	413298134	1.190000e-18	104.0
23	TraesCS1B01G331600	chr1D	84.810	79	8	3	1893	1969	413348018	413347942	2.590000e-10	76.8
24	TraesCS1B01G331600	chr7A	82.527	1385	218	16	5	1385	62279361	62277997	0.000000e+00	1195.0
25	TraesCS1B01G331600	chr7A	100.000	30	0	0	2374	2403	251731462	251731491	3.370000e-04	56.5
26	TraesCS1B01G331600	chr5A	75.906	469	82	25	31	488	698647412	698646964	6.800000e-51	211.0
27	TraesCS1B01G331600	chr5A	93.478	46	3	0	2375	2420	105487767	105487812	4.330000e-08	69.4
28	TraesCS1B01G331600	chr5A	93.478	46	3	0	2375	2420	105607309	105607354	4.330000e-08	69.4
29	TraesCS1B01G331600	chr5B	95.652	46	2	0	2375	2420	482306209	482306164	9.300000e-10	75.0
30	TraesCS1B01G331600	chr3A	90.566	53	3	1	2367	2419	336618173	336618123	4.330000e-08	69.4
31	TraesCS1B01G331600	chr2A	90.566	53	3	2	2375	2426	470625053	470625002	4.330000e-08	69.4
32	TraesCS1B01G331600	chr6A	91.304	46	4	0	2375	2420	277274196	277274151	2.010000e-06	63.9
33	TraesCS1B01G331600	chr2D	88.000	50	6	0	2375	2424	352697851	352697802	2.600000e-05	60.2
34	TraesCS1B01G331600	chr4D	86.000	50	7	0	2375	2424	442219478	442219429	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G331600	chr1B	557461993	557464418	2425	True	4481.00	4481	100.00000	1	2426	1	chr1B.!!$R2	2425
1	TraesCS1B01G331600	chr1B	557411011	557412413	1402	True	1554.00	1554	86.80900	17	1412	1	chr1B.!!$R1	1395
2	TraesCS1B01G331600	chr1A	510341793	510343198	1405	True	1358.00	1358	84.30000	14	1409	1	chr1A.!!$R1	1395
3	TraesCS1B01G331600	chr1A	510351804	510354300	2496	True	1112.00	1834	86.99400	1	2373	2	chr1A.!!$R4	2372
4	TraesCS1B01G331600	chr1A	510362988	510363880	892	True	431.00	431	76.73000	1468	2373	1	chr1A.!!$R2	905
5	TraesCS1B01G331600	chr4B	559851333	559852468	1135	True	1637.00	1637	93.05800	1264	2374	1	chr4B.!!$R1	1110
6	TraesCS1B01G331600	chr1D	413233067	413234473	1406	True	1509.00	1509	86.13900	17	1420	1	chr1D.!!$R1	1403
7	TraesCS1B01G331600	chr1D	413224946	413226316	1370	False	1447.00	1447	85.80700	3	1373	1	chr1D.!!$F1	1370
8	TraesCS1B01G331600	chr1D	413357304	413359812	2508	True	658.00	1160	92.56900	460	1741	2	chr1D.!!$R7	1281
9	TraesCS1B01G331600	chr1D	413315067	413319644	4577	True	437.00	651	86.51250	4	1812	4	chr1D.!!$R6	1808
10	TraesCS1B01G331600	chr1D	413295701	413298217	2516	True	409.75	830	88.64275	1	2374	4	chr1D.!!$R5	2373
11	TraesCS1B01G331600	chr7A	62277997	62279361	1364	True	1195.00	1195	82.52700	5	1385	1	chr7A.!!$R1	1380

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
394	408	0.455464	CGACGCTGTTGTCACCGATA	60.455	55.0	0.0	0.0	38.84	2.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2289	7444	0.671251	GAGTCCGAGTAGCAGGGATG	59.329	60.0	0.0	0.0	31.43	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	45	1.451028	AAGAAGCTGCGGATCCTGC	60.451	57.895	18.08	18.08	0.00	4.85
63	65	2.434359	GTCCCCTTCTTCGCCACG	60.434	66.667	0.00	0.00	0.00	4.94
138	143	3.823330	ACCGTCGAGCCCACGATC	61.823	66.667	0.00	0.00	43.93	3.69
141	146	4.194720	GTCGAGCCCACGATCGCT	62.195	66.667	16.60	3.37	43.93	4.93
165	170	1.002134	CCCAGCCAATGTCTCGGTT	60.002	57.895	0.00	0.00	0.00	4.44
167	172	1.503542	CAGCCAATGTCTCGGTTGC	59.496	57.895	0.00	0.00	0.00	4.17
174	179	0.817654	ATGTCTCGGTTGCTCGATCA	59.182	50.000	0.00	0.00	38.55	2.92
282	296	3.453679	GAGAACCTCTCCGCCGCT	61.454	66.667	0.00	0.00	37.55	5.52
283	297	3.708220	GAGAACCTCTCCGCCGCTG	62.708	68.421	0.00	0.00	37.55	5.18
328	342	4.113815	CCGCTGCCATGGAAGGGA	62.114	66.667	33.46	0.00	43.46	4.20
394	408	0.455464	CGACGCTGTTGTCACCGATA	60.455	55.000	0.00	0.00	38.84	2.92
402	416	4.253685	CTGTTGTCACCGATATCCACTTT	58.746	43.478	0.00	0.00	0.00	2.66
423	437	1.371022	CTGGATCTCCGTCATCGCG	60.371	63.158	0.00	0.00	39.43	5.87
505	531	2.715005	GCAATATCGCTGGCGCAA	59.285	55.556	10.83	0.00	39.59	4.85
562	591	3.896854	GGGTTTAGGCCCGAAGATT	57.103	52.632	0.00	0.00	39.17	2.40
599	628	1.016653	GCTGCCGGAGTTCTTGAGAC	61.017	60.000	5.05	0.00	0.00	3.36
825	894	2.499205	CGTTGGCTGGGCTCGATA	59.501	61.111	0.00	0.00	0.00	2.92
888	957	3.043465	TCCATCTCTGGAGATCAGCTT	57.957	47.619	9.84	0.00	46.95	3.74
1188	4187	0.450583	CGGACGTTCTCAAGATCGGA	59.549	55.000	13.35	0.00	40.44	4.55
1464	5511	0.391597	GACCAAGTCGGACAGGTTCA	59.608	55.000	21.24	0.00	38.63	3.18
1465	5512	0.393077	ACCAAGTCGGACAGGTTCAG	59.607	55.000	16.55	0.00	38.63	3.02
1533	5583	0.586802	GTTTCCTTGGACTCGTGTGC	59.413	55.000	1.83	1.83	34.96	4.57
1742	6462	5.625311	GGTGTTCAAAAGCTTGAGATTAACG	59.375	40.000	0.00	0.00	42.48	3.18
1812	6534	4.037923	AGCATTCAGAACAAAATGGAACGT	59.962	37.500	0.00	0.00	34.22	3.99
1872	6595	3.701542	TGCATCACCAACCAAACTAAACA	59.298	39.130	0.00	0.00	0.00	2.83
1927	6734	0.591170	CAACCGAAGAATTGCACCGT	59.409	50.000	0.00	0.00	0.00	4.83
2094	7224	0.109781	CATTCTCCACGGCGGTTTTG	60.110	55.000	13.24	0.00	35.57	2.44
2182	7319	3.763897	CAGGGGTCTGTCCTAAATTTTGG	59.236	47.826	11.94	11.94	36.30	3.28
2220	7370	2.086054	ATGTCGAAGGAAGCACAGTC	57.914	50.000	0.00	0.00	0.00	3.51
2232	7387	1.853319	CACAGTCGTTCGACCTTGC	59.147	57.895	19.41	0.00	35.90	4.01
2238	7393	2.230508	AGTCGTTCGACCTTGCATTCTA	59.769	45.455	19.41	0.00	35.90	2.10
2268	7423	1.336424	GGCACACCAAAACATTACCCG	60.336	52.381	0.00	0.00	35.26	5.28
2304	7459	0.387202	CAGTCATCCCTGCTACTCGG	59.613	60.000	0.00	0.00	0.00	4.63
2374	7530	2.162608	TCCAACGCCACATTTTATTCGG	59.837	45.455	0.00	0.00	0.00	4.30
2375	7531	2.525055	CAACGCCACATTTTATTCGGG	58.475	47.619	0.00	0.00	0.00	5.14
2376	7532	1.099689	ACGCCACATTTTATTCGGGG	58.900	50.000	0.00	0.00	35.89	5.73
2377	7533	1.340211	ACGCCACATTTTATTCGGGGA	60.340	47.619	0.00	0.00	34.07	4.81
2378	7534	1.746220	CGCCACATTTTATTCGGGGAA	59.254	47.619	0.00	0.00	31.68	3.97
2379	7535	2.164624	CGCCACATTTTATTCGGGGAAA	59.835	45.455	0.00	0.00	31.68	3.13
2380	7536	3.517602	GCCACATTTTATTCGGGGAAAC	58.482	45.455	0.00	0.00	0.00	2.78
2381	7537	3.056465	GCCACATTTTATTCGGGGAAACA	60.056	43.478	0.00	0.00	0.00	2.83
2382	7538	4.490743	CCACATTTTATTCGGGGAAACAC	58.509	43.478	0.00	0.00	0.00	3.32
2383	7539	4.219725	CCACATTTTATTCGGGGAAACACT	59.780	41.667	0.00	0.00	0.00	3.55
2384	7540	5.279256	CCACATTTTATTCGGGGAAACACTT	60.279	40.000	0.00	0.00	0.00	3.16
2385	7541	6.220201	CACATTTTATTCGGGGAAACACTTT	58.780	36.000	0.00	0.00	0.00	2.66
2386	7542	6.364976	CACATTTTATTCGGGGAAACACTTTC	59.635	38.462	0.00	0.00	38.94	2.62
2387	7543	6.266786	ACATTTTATTCGGGGAAACACTTTCT	59.733	34.615	0.00	0.00	39.59	2.52
2388	7544	7.449086	ACATTTTATTCGGGGAAACACTTTCTA	59.551	33.333	0.00	0.00	39.59	2.10
2389	7545	8.466798	CATTTTATTCGGGGAAACACTTTCTAT	58.533	33.333	0.00	0.00	39.59	1.98
2390	7546	7.619964	TTTATTCGGGGAAACACTTTCTATC	57.380	36.000	0.00	0.00	39.59	2.08
2391	7547	4.903045	TTCGGGGAAACACTTTCTATCT	57.097	40.909	0.00	0.00	39.59	1.98
2392	7548	6.555463	ATTCGGGGAAACACTTTCTATCTA	57.445	37.500	0.00	0.00	39.59	1.98
2393	7549	6.555463	TTCGGGGAAACACTTTCTATCTAT	57.445	37.500	0.00	0.00	39.59	1.98
2394	7550	7.664552	TTCGGGGAAACACTTTCTATCTATA	57.335	36.000	0.00	0.00	39.59	1.31
2395	7551	7.286215	TCGGGGAAACACTTTCTATCTATAG	57.714	40.000	0.00	0.00	39.59	1.31
2396	7552	6.837568	TCGGGGAAACACTTTCTATCTATAGT	59.162	38.462	0.00	0.00	39.59	2.12
2397	7553	7.014038	TCGGGGAAACACTTTCTATCTATAGTC	59.986	40.741	0.00	0.00	39.59	2.59
2398	7554	7.014422	CGGGGAAACACTTTCTATCTATAGTCT	59.986	40.741	0.00	0.00	39.59	3.24
2399	7555	8.145122	GGGGAAACACTTTCTATCTATAGTCTG	58.855	40.741	0.00	0.00	39.59	3.51
2400	7556	8.915036	GGGAAACACTTTCTATCTATAGTCTGA	58.085	37.037	0.00	0.00	39.59	3.27
2414	7570	8.136563	TCTATAGTCTGATACTAGACCATCGT	57.863	38.462	0.00	0.00	46.48	3.73
2415	7571	8.252417	TCTATAGTCTGATACTAGACCATCGTC	58.748	40.741	0.00	0.00	46.48	4.20
2416	7572	5.037383	AGTCTGATACTAGACCATCGTCA	57.963	43.478	0.00	0.00	46.48	4.35
2417	7573	5.060506	AGTCTGATACTAGACCATCGTCAG	58.939	45.833	0.00	0.00	46.48	3.51
2418	7574	5.057819	GTCTGATACTAGACCATCGTCAGA	58.942	45.833	0.00	0.00	41.87	3.27
2419	7575	5.057819	TCTGATACTAGACCATCGTCAGAC	58.942	45.833	0.00	0.00	41.87	3.51
2420	7576	5.037383	TGATACTAGACCATCGTCAGACT	57.963	43.478	0.00	0.00	41.87	3.24
2421	7577	5.437946	TGATACTAGACCATCGTCAGACTT	58.562	41.667	0.00	0.00	41.87	3.01
2422	7578	5.297029	TGATACTAGACCATCGTCAGACTTG	59.703	44.000	0.00	0.00	41.87	3.16
2423	7579	3.422796	ACTAGACCATCGTCAGACTTGT	58.577	45.455	0.00	0.00	41.87	3.16
2424	7580	3.827302	ACTAGACCATCGTCAGACTTGTT	59.173	43.478	0.00	0.00	41.87	2.83
2425	7581	3.032017	AGACCATCGTCAGACTTGTTG	57.968	47.619	0.00	0.00	41.87	3.33

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	45	2.184579	GGCGAAGAAGGGGACGAG	59.815	66.667	0.00	0.00	0.00	4.18
110	115	3.680786	CGACGGTGTCAGGCCTGA	61.681	66.667	32.00	32.00	37.24	3.86
117	122	3.986006	GTGGGCTCGACGGTGTCA	61.986	66.667	0.00	0.00	32.09	3.58
141	146	1.074775	GACATTGGCTGGGGTGACA	59.925	57.895	0.00	0.00	0.00	3.58
156	161	0.171231	CTGATCGAGCAACCGAGACA	59.829	55.000	4.32	0.00	42.21	3.41
200	205	2.426122	TATCCTGATGGCAGCGCTCG	62.426	60.000	7.13	4.46	40.91	5.03
201	206	0.669932	CTATCCTGATGGCAGCGCTC	60.670	60.000	7.13	2.01	40.91	5.03
202	207	1.370437	CTATCCTGATGGCAGCGCT	59.630	57.895	2.64	2.64	40.91	5.92
203	208	2.323580	GCTATCCTGATGGCAGCGC	61.324	63.158	10.22	0.00	43.66	5.92
207	221	0.695462	AGGTGGCTATCCTGATGGCA	60.695	55.000	15.94	9.05	45.65	4.92
315	329	3.329889	AGCGTCCCTTCCATGGCA	61.330	61.111	6.96	0.00	0.00	4.92
345	359	2.429767	CCTGATGAGCGCCTCCTGA	61.430	63.158	2.29	0.00	0.00	3.86
381	395	3.973206	AAGTGGATATCGGTGACAACA	57.027	42.857	0.00	0.00	0.00	3.33
384	398	4.935205	CAGAAAAAGTGGATATCGGTGACA	59.065	41.667	0.00	0.00	0.00	3.58
402	416	1.202417	GCGATGACGGAGATCCAGAAA	60.202	52.381	0.00	0.00	40.15	2.52
423	437	4.874977	GGCACGCCTAGCTCGTCC	62.875	72.222	0.00	6.81	38.19	4.79
523	549	1.004918	GGACGACCACCTCCTGTTG	60.005	63.158	0.00	0.00	35.97	3.33
557	586	2.628657	CCGTCCTTAGGATCCGAATCTT	59.371	50.000	12.05	0.00	32.73	2.40
562	591	0.822532	GCTCCGTCCTTAGGATCCGA	60.823	60.000	12.05	0.00	37.13	4.55
599	628	1.444553	GGTCGTGTCTCTCTTGGCG	60.445	63.158	0.00	0.00	0.00	5.69
609	638	1.810030	GGGCTGAATCGGTCGTGTC	60.810	63.158	0.00	0.00	0.00	3.67
791	837	1.374125	CGGATGCACGGTGACTCAA	60.374	57.895	13.29	0.00	0.00	3.02
825	894	2.607750	ACCACCGAGCATCTGGGT	60.608	61.111	0.00	0.00	43.20	4.51
1032	1108	2.281345	GCCGGATGAGCCAGGATG	60.281	66.667	5.05	0.00	35.94	3.51
1188	4187	2.283966	CCGTCCCACACCCTCTCT	60.284	66.667	0.00	0.00	0.00	3.10
1464	5511	2.049063	GTTGGACACGAGCTCGCT	60.049	61.111	34.83	20.89	44.43	4.93
1533	5583	2.579787	GGAGACGCCATCGACACG	60.580	66.667	0.00	0.00	39.41	4.49
1539	5589	2.359900	ACAAATTCAGGAGACGCCATC	58.640	47.619	0.00	0.00	40.02	3.51
1742	6462	3.841643	CAGATTTCTGTCATTGTTGGGC	58.158	45.455	0.00	0.00	39.09	5.36
1883	6607	2.095919	CACGCCTCCCTTCGTTAAAAAG	60.096	50.000	0.00	0.00	36.73	2.27
1927	6734	2.348104	ACTGACGGCTCCACGCATA	61.348	57.895	0.00	0.00	41.67	3.14
2094	7224	0.969894	CCCTCCGGACTATGACCATC	59.030	60.000	0.00	0.00	0.00	3.51
2112	7242	1.533625	TACCATTCAAGCACTGCACC	58.466	50.000	3.30	0.00	0.00	5.01
2118	7248	4.773323	AAGAGCTTTACCATTCAAGCAC	57.227	40.909	6.66	0.40	46.70	4.40
2182	7319	8.475331	TCGACATTAGACCAAATAGAAACTTC	57.525	34.615	0.00	0.00	0.00	3.01
2220	7370	2.734606	TGTTAGAATGCAAGGTCGAACG	59.265	45.455	13.03	0.00	33.56	3.95
2232	7387	4.034048	GGTGTGCCGATAGTTGTTAGAATG	59.966	45.833	0.00	0.00	0.00	2.67
2238	7393	2.264005	TTGGTGTGCCGATAGTTGTT	57.736	45.000	0.00	0.00	37.67	2.83
2289	7444	0.671251	GAGTCCGAGTAGCAGGGATG	59.329	60.000	0.00	0.00	31.43	3.51
2304	7459	3.715495	AGACGCATCATGAATCAGAGTC	58.285	45.455	0.00	7.90	0.00	3.36
2374	7530	8.915036	TCAGACTATAGATAGAAAGTGTTTCCC	58.085	37.037	6.78	0.00	40.54	3.97
2388	7544	8.764558	ACGATGGTCTAGTATCAGACTATAGAT	58.235	37.037	6.78	0.00	44.13	1.98
2389	7545	8.136563	ACGATGGTCTAGTATCAGACTATAGA	57.863	38.462	6.78	0.00	44.13	1.98
2390	7546	8.035984	TGACGATGGTCTAGTATCAGACTATAG	58.964	40.741	9.41	0.00	44.13	1.31
2391	7547	7.904205	TGACGATGGTCTAGTATCAGACTATA	58.096	38.462	9.41	0.00	44.13	1.31
2392	7548	6.770542	TGACGATGGTCTAGTATCAGACTAT	58.229	40.000	9.41	2.24	46.02	2.12
2393	7549	6.041751	TCTGACGATGGTCTAGTATCAGACTA	59.958	42.308	9.41	0.00	43.73	2.59
2394	7550	5.037383	TGACGATGGTCTAGTATCAGACT	57.963	43.478	9.41	0.00	43.73	3.24
2395	7551	5.057819	TCTGACGATGGTCTAGTATCAGAC	58.942	45.833	9.41	0.00	43.79	3.51
2396	7552	5.057819	GTCTGACGATGGTCTAGTATCAGA	58.942	45.833	9.41	0.00	43.79	3.27
2397	7553	5.060506	AGTCTGACGATGGTCTAGTATCAG	58.939	45.833	9.41	0.00	43.79	2.90
2398	7554	5.037383	AGTCTGACGATGGTCTAGTATCA	57.963	43.478	9.41	0.00	43.79	2.15
2399	7555	5.297278	ACAAGTCTGACGATGGTCTAGTATC	59.703	44.000	17.01	0.00	43.79	2.24
2400	7556	5.194432	ACAAGTCTGACGATGGTCTAGTAT	58.806	41.667	17.01	0.00	43.79	2.12
2401	7557	4.586884	ACAAGTCTGACGATGGTCTAGTA	58.413	43.478	17.01	0.00	43.79	1.82
2402	7558	3.422796	ACAAGTCTGACGATGGTCTAGT	58.577	45.455	17.01	0.00	43.79	2.57
2403	7559	4.169508	CAACAAGTCTGACGATGGTCTAG	58.830	47.826	17.01	5.41	43.79	2.43
2404	7560	4.174411	CAACAAGTCTGACGATGGTCTA	57.826	45.455	17.01	0.00	43.79	2.59
2405	7561	3.032017	CAACAAGTCTGACGATGGTCT	57.968	47.619	17.01	3.32	43.79	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.