Multiple sequence alignment - TraesCS1B01G331400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G331400 chr1B 100.000 5834 0 0 1 5834 556996201 556990368 0.000000e+00 10774.0
1 TraesCS1B01G331400 chr1B 93.766 401 23 2 1 400 557096969 557096570 8.360000e-168 601.0
2 TraesCS1B01G331400 chr1B 90.769 390 36 0 12 401 656890471 656890860 6.700000e-144 521.0
3 TraesCS1B01G331400 chr1D 92.510 3538 164 51 697 4160 413218975 413215465 0.000000e+00 4972.0
4 TraesCS1B01G331400 chr1D 89.120 1682 96 41 4167 5834 413215390 413213782 0.000000e+00 2012.0
5 TraesCS1B01G331400 chr1D 85.818 275 38 1 408 681 413219312 413219038 2.060000e-74 291.0
6 TraesCS1B01G331400 chr1D 85.075 67 10 0 409 475 427919637 427919571 1.050000e-07 69.4
7 TraesCS1B01G331400 chr1A 92.522 1618 77 15 765 2348 510286997 510285390 0.000000e+00 2278.0
8 TraesCS1B01G331400 chr1A 92.812 960 47 12 4162 5116 510283696 510282754 0.000000e+00 1371.0
9 TraesCS1B01G331400 chr1A 86.644 1183 93 42 2537 3685 510285275 510284124 0.000000e+00 1249.0
10 TraesCS1B01G331400 chr1A 88.318 642 36 18 5204 5834 510282613 510282000 0.000000e+00 734.0
11 TraesCS1B01G331400 chr1A 95.580 362 11 3 3799 4160 510284126 510283770 5.070000e-160 575.0
12 TraesCS1B01G331400 chr1A 82.397 267 45 2 417 681 510287293 510287027 1.260000e-56 231.0
13 TraesCS1B01G331400 chr1A 87.379 103 13 0 2437 2539 510285327 510285225 1.030000e-22 119.0
14 TraesCS1B01G331400 chr4B 94.349 407 20 3 1 406 417772863 417772459 6.420000e-174 621.0
15 TraesCS1B01G331400 chr4B 94.074 405 21 2 1 402 417814928 417814524 3.860000e-171 612.0
16 TraesCS1B01G331400 chr4B 92.060 403 31 1 1 402 579474498 579474900 3.050000e-157 566.0
17 TraesCS1B01G331400 chr4B 91.563 403 32 2 1 402 579507509 579507910 6.610000e-154 555.0
18 TraesCS1B01G331400 chr3B 92.771 415 27 3 1 413 450627328 450627741 1.080000e-166 597.0
19 TraesCS1B01G331400 chr3B 92.556 403 27 3 1 402 450590262 450590662 5.070000e-160 575.0
20 TraesCS1B01G331400 chr3B 88.557 402 38 8 5 402 16628344 16628741 1.140000e-131 481.0
21 TraesCS1B01G331400 chr3B 91.358 81 7 0 3721 3801 106146573 106146493 1.720000e-20 111.0
22 TraesCS1B01G331400 chr7D 95.349 86 4 0 2347 2432 401536687 401536772 2.840000e-28 137.0
23 TraesCS1B01G331400 chr6D 95.455 88 1 1 2347 2431 24823423 24823336 2.840000e-28 137.0
24 TraesCS1B01G331400 chr6B 94.505 91 2 1 2344 2431 40456618 40456708 2.840000e-28 137.0
25 TraesCS1B01G331400 chr6B 95.294 85 4 0 2347 2431 278674697 278674613 1.020000e-27 135.0
26 TraesCS1B01G331400 chr7B 95.294 85 4 0 2347 2431 13801855 13801939 1.020000e-27 135.0
27 TraesCS1B01G331400 chr6A 95.294 85 4 0 2347 2431 209391425 209391341 1.020000e-27 135.0
28 TraesCS1B01G331400 chr5D 93.478 92 4 2 2347 2437 541806181 541806271 1.020000e-27 135.0
29 TraesCS1B01G331400 chr5D 96.053 76 3 0 3724 3799 29158754 29158679 2.210000e-24 124.0
30 TraesCS1B01G331400 chr2A 93.407 91 5 1 2347 2436 67713361 67713271 3.670000e-27 134.0
31 TraesCS1B01G331400 chr2A 92.405 79 6 0 3721 3799 27949150 27949072 4.780000e-21 113.0
32 TraesCS1B01G331400 chr5B 91.304 46 4 0 3724 3769 357133209 357133254 4.880000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G331400 chr1B 556990368 556996201 5833 True 10774.000000 10774 100.000000 1 5834 1 chr1B.!!$R1 5833
1 TraesCS1B01G331400 chr1D 413213782 413219312 5530 True 2425.000000 4972 89.149333 408 5834 3 chr1D.!!$R2 5426
2 TraesCS1B01G331400 chr1A 510282000 510287293 5293 True 936.714286 2278 89.378857 417 5834 7 chr1A.!!$R1 5417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.034670 ATGAAGACCAAGAGCCAGGC 60.035 55.0 1.84 1.84 0.00 4.85 F
60 61 0.038892 GCGGAACTACAACGGTCAGA 60.039 55.0 0.00 0.00 0.00 3.27 F
206 207 0.252467 AAGTCACCCTCCTCCTCTGG 60.252 60.0 0.00 0.00 0.00 3.86 F
1726 1806 0.103755 GGGCGTTAGTACTGCTACCC 59.896 60.0 5.39 7.83 0.00 3.69 F
1727 1807 0.103755 GGCGTTAGTACTGCTACCCC 59.896 60.0 5.39 0.00 0.00 4.95 F
3697 3892 0.108041 TGATTAAGGACCCGTTCGGC 60.108 55.0 5.66 0.00 33.26 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1804 1.118838 TCAAAGCAAAACCAGTGGGG 58.881 50.000 15.21 0.91 44.81 4.96 R
1727 1807 3.001533 GCACAATCAAAGCAAAACCAGTG 59.998 43.478 0.00 0.00 0.00 3.66 R
1744 1835 3.699779 TTTTTAGCACATGACGCACAA 57.300 38.095 13.07 5.19 0.00 3.33 R
3697 3892 4.035675 GGATTTTAAGGAGCTGACGGATTG 59.964 45.833 0.00 0.00 0.00 2.67 R
3732 3952 1.877443 GGACGGAGCTGCAGTTAAAAA 59.123 47.619 16.64 0.00 0.00 1.94 R
5251 5638 1.200716 CGTCAGCCATCATGCAAGTTT 59.799 47.619 0.00 0.00 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.824159 ATTTTATGAAGATCACTCGACCTATG 57.176 34.615 0.00 0.00 0.00 2.23
26 27 7.582667 TTTATGAAGATCACTCGACCTATGA 57.417 36.000 0.00 0.00 0.00 2.15
27 28 7.582667 TTATGAAGATCACTCGACCTATGAA 57.417 36.000 0.00 0.00 0.00 2.57
28 29 5.506686 TGAAGATCACTCGACCTATGAAG 57.493 43.478 0.00 0.00 0.00 3.02
29 30 5.193679 TGAAGATCACTCGACCTATGAAGA 58.806 41.667 0.00 0.00 0.00 2.87
30 31 5.066634 TGAAGATCACTCGACCTATGAAGAC 59.933 44.000 0.00 0.00 0.00 3.01
31 32 3.886505 AGATCACTCGACCTATGAAGACC 59.113 47.826 0.00 0.00 0.00 3.85
32 33 3.081710 TCACTCGACCTATGAAGACCA 57.918 47.619 0.00 0.00 0.00 4.02
33 34 3.427573 TCACTCGACCTATGAAGACCAA 58.572 45.455 0.00 0.00 0.00 3.67
34 35 3.444034 TCACTCGACCTATGAAGACCAAG 59.556 47.826 0.00 0.00 0.00 3.61
35 36 3.444034 CACTCGACCTATGAAGACCAAGA 59.556 47.826 0.00 0.00 0.00 3.02
36 37 3.697045 ACTCGACCTATGAAGACCAAGAG 59.303 47.826 0.00 0.00 0.00 2.85
37 38 2.427453 TCGACCTATGAAGACCAAGAGC 59.573 50.000 0.00 0.00 0.00 4.09
38 39 2.482142 CGACCTATGAAGACCAAGAGCC 60.482 54.545 0.00 0.00 0.00 4.70
39 40 2.501723 GACCTATGAAGACCAAGAGCCA 59.498 50.000 0.00 0.00 0.00 4.75
40 41 2.503356 ACCTATGAAGACCAAGAGCCAG 59.497 50.000 0.00 0.00 0.00 4.85
41 42 2.158842 CCTATGAAGACCAAGAGCCAGG 60.159 54.545 0.00 0.00 0.00 4.45
42 43 0.034670 ATGAAGACCAAGAGCCAGGC 60.035 55.000 1.84 1.84 0.00 4.85
43 44 1.743252 GAAGACCAAGAGCCAGGCG 60.743 63.158 5.55 0.00 0.00 5.52
44 45 3.259633 AAGACCAAGAGCCAGGCGG 62.260 63.158 5.55 3.32 0.00 6.13
45 46 3.706373 GACCAAGAGCCAGGCGGA 61.706 66.667 5.55 0.00 0.00 5.54
46 47 3.249189 ACCAAGAGCCAGGCGGAA 61.249 61.111 5.55 0.00 0.00 4.30
47 48 2.747855 CCAAGAGCCAGGCGGAAC 60.748 66.667 5.55 0.00 0.00 3.62
48 49 2.348998 CAAGAGCCAGGCGGAACT 59.651 61.111 5.55 1.64 0.00 3.01
49 50 1.596934 CAAGAGCCAGGCGGAACTA 59.403 57.895 5.55 0.00 0.00 2.24
50 51 0.741221 CAAGAGCCAGGCGGAACTAC 60.741 60.000 5.55 0.00 0.00 2.73
51 52 1.192146 AAGAGCCAGGCGGAACTACA 61.192 55.000 5.55 0.00 0.00 2.74
52 53 1.192146 AGAGCCAGGCGGAACTACAA 61.192 55.000 5.55 0.00 0.00 2.41
53 54 1.003718 AGCCAGGCGGAACTACAAC 60.004 57.895 5.55 0.00 0.00 3.32
54 55 2.388232 GCCAGGCGGAACTACAACG 61.388 63.158 0.00 0.00 0.00 4.10
55 56 1.740296 CCAGGCGGAACTACAACGG 60.740 63.158 0.00 0.00 0.00 4.44
56 57 1.005394 CAGGCGGAACTACAACGGT 60.005 57.895 0.00 0.00 0.00 4.83
57 58 1.012486 CAGGCGGAACTACAACGGTC 61.012 60.000 0.00 0.00 0.00 4.79
58 59 1.005867 GGCGGAACTACAACGGTCA 60.006 57.895 0.00 0.00 0.00 4.02
59 60 1.012486 GGCGGAACTACAACGGTCAG 61.012 60.000 0.00 0.00 0.00 3.51
60 61 0.038892 GCGGAACTACAACGGTCAGA 60.039 55.000 0.00 0.00 0.00 3.27
61 62 1.694639 CGGAACTACAACGGTCAGAC 58.305 55.000 0.00 0.00 0.00 3.51
62 63 1.694639 GGAACTACAACGGTCAGACG 58.305 55.000 0.00 0.00 40.31 4.18
70 71 2.716814 ACGGTCAGACGTTCACTCT 58.283 52.632 0.00 0.00 46.25 3.24
71 72 0.311165 ACGGTCAGACGTTCACTCTG 59.689 55.000 0.00 0.00 46.25 3.35
72 73 0.311165 CGGTCAGACGTTCACTCTGT 59.689 55.000 0.00 0.00 37.12 3.41
73 74 1.534163 CGGTCAGACGTTCACTCTGTA 59.466 52.381 0.00 0.00 37.12 2.74
74 75 2.412977 CGGTCAGACGTTCACTCTGTAG 60.413 54.545 0.00 0.00 37.12 2.74
75 76 2.553172 GGTCAGACGTTCACTCTGTAGT 59.447 50.000 0.00 0.00 37.12 2.73
76 77 3.365164 GGTCAGACGTTCACTCTGTAGTC 60.365 52.174 0.00 0.00 37.12 2.59
77 78 3.499157 GTCAGACGTTCACTCTGTAGTCT 59.501 47.826 0.00 0.00 39.24 3.24
78 79 4.023878 GTCAGACGTTCACTCTGTAGTCTT 60.024 45.833 0.00 0.00 36.90 3.01
79 80 4.579340 TCAGACGTTCACTCTGTAGTCTTT 59.421 41.667 0.00 0.00 36.90 2.52
80 81 5.761726 TCAGACGTTCACTCTGTAGTCTTTA 59.238 40.000 0.00 0.00 36.90 1.85
81 82 6.430308 TCAGACGTTCACTCTGTAGTCTTTAT 59.570 38.462 0.00 0.00 36.90 1.40
82 83 7.605309 TCAGACGTTCACTCTGTAGTCTTTATA 59.395 37.037 0.00 0.00 36.90 0.98
83 84 7.906010 CAGACGTTCACTCTGTAGTCTTTATAG 59.094 40.741 0.00 0.00 36.90 1.31
84 85 7.066043 AGACGTTCACTCTGTAGTCTTTATAGG 59.934 40.741 0.00 0.00 35.70 2.57
85 86 5.972382 CGTTCACTCTGTAGTCTTTATAGGC 59.028 44.000 0.00 0.00 31.97 3.93
86 87 6.404403 CGTTCACTCTGTAGTCTTTATAGGCA 60.404 42.308 0.00 0.00 31.97 4.75
87 88 7.493367 GTTCACTCTGTAGTCTTTATAGGCAT 58.507 38.462 0.00 0.00 31.97 4.40
88 89 7.661536 TCACTCTGTAGTCTTTATAGGCATT 57.338 36.000 0.00 0.00 31.97 3.56
89 90 8.762481 TCACTCTGTAGTCTTTATAGGCATTA 57.238 34.615 0.00 0.00 31.97 1.90
90 91 9.197306 TCACTCTGTAGTCTTTATAGGCATTAA 57.803 33.333 0.00 0.00 31.97 1.40
91 92 9.988815 CACTCTGTAGTCTTTATAGGCATTAAT 57.011 33.333 0.00 0.00 31.97 1.40
106 107 7.100458 AGGCATTAATTGTACTTAAAGCTGG 57.900 36.000 11.97 0.00 36.22 4.85
107 108 5.748630 GGCATTAATTGTACTTAAAGCTGGC 59.251 40.000 11.97 6.30 36.22 4.85
108 109 5.455525 GCATTAATTGTACTTAAAGCTGGCG 59.544 40.000 7.28 0.00 34.26 5.69
109 110 6.551736 CATTAATTGTACTTAAAGCTGGCGT 58.448 36.000 0.00 0.00 0.00 5.68
110 111 6.563222 TTAATTGTACTTAAAGCTGGCGTT 57.437 33.333 0.00 0.00 0.00 4.84
111 112 7.670009 TTAATTGTACTTAAAGCTGGCGTTA 57.330 32.000 0.00 0.00 0.00 3.18
112 113 6.753107 AATTGTACTTAAAGCTGGCGTTAT 57.247 33.333 2.29 0.00 0.00 1.89
113 114 5.789710 TTGTACTTAAAGCTGGCGTTATC 57.210 39.130 2.29 0.00 0.00 1.75
114 115 4.823157 TGTACTTAAAGCTGGCGTTATCA 58.177 39.130 2.29 0.00 0.00 2.15
115 116 4.868171 TGTACTTAAAGCTGGCGTTATCAG 59.132 41.667 2.29 1.47 35.49 2.90
116 117 3.939066 ACTTAAAGCTGGCGTTATCAGT 58.061 40.909 2.29 1.99 34.89 3.41
117 118 5.080969 ACTTAAAGCTGGCGTTATCAGTA 57.919 39.130 2.29 0.00 34.89 2.74
118 119 5.484715 ACTTAAAGCTGGCGTTATCAGTAA 58.515 37.500 2.29 0.00 34.89 2.24
119 120 5.350640 ACTTAAAGCTGGCGTTATCAGTAAC 59.649 40.000 2.29 0.00 37.44 2.50
129 130 4.732672 GTTATCAGTAACGTCCCTCCTT 57.267 45.455 0.00 0.00 31.67 3.36
130 131 5.841957 GTTATCAGTAACGTCCCTCCTTA 57.158 43.478 0.00 0.00 31.67 2.69
131 132 6.212888 GTTATCAGTAACGTCCCTCCTTAA 57.787 41.667 0.00 0.00 31.67 1.85
132 133 6.814043 GTTATCAGTAACGTCCCTCCTTAAT 58.186 40.000 0.00 0.00 31.67 1.40
133 134 4.730949 TCAGTAACGTCCCTCCTTAATG 57.269 45.455 0.00 0.00 0.00 1.90
134 135 4.346730 TCAGTAACGTCCCTCCTTAATGA 58.653 43.478 0.00 0.00 0.00 2.57
135 136 4.773674 TCAGTAACGTCCCTCCTTAATGAA 59.226 41.667 0.00 0.00 0.00 2.57
136 137 4.868734 CAGTAACGTCCCTCCTTAATGAAC 59.131 45.833 0.00 0.00 0.00 3.18
137 138 4.529377 AGTAACGTCCCTCCTTAATGAACA 59.471 41.667 0.00 0.00 0.00 3.18
138 139 4.569719 AACGTCCCTCCTTAATGAACAT 57.430 40.909 0.00 0.00 0.00 2.71
139 140 4.569719 ACGTCCCTCCTTAATGAACATT 57.430 40.909 5.40 5.40 34.93 2.71
140 141 4.261801 ACGTCCCTCCTTAATGAACATTG 58.738 43.478 9.87 0.00 32.50 2.82
141 142 4.019681 ACGTCCCTCCTTAATGAACATTGA 60.020 41.667 9.87 1.65 32.50 2.57
142 143 4.941263 CGTCCCTCCTTAATGAACATTGAA 59.059 41.667 9.87 1.48 32.50 2.69
143 144 5.163754 CGTCCCTCCTTAATGAACATTGAAC 60.164 44.000 9.87 0.00 32.50 3.18
144 145 5.125578 GTCCCTCCTTAATGAACATTGAACC 59.874 44.000 9.87 0.00 32.50 3.62
145 146 4.402474 CCCTCCTTAATGAACATTGAACCC 59.598 45.833 9.87 0.00 32.50 4.11
146 147 5.264395 CCTCCTTAATGAACATTGAACCCT 58.736 41.667 9.87 0.00 32.50 4.34
147 148 5.358160 CCTCCTTAATGAACATTGAACCCTC 59.642 44.000 9.87 0.00 32.50 4.30
148 149 6.139679 TCCTTAATGAACATTGAACCCTCT 57.860 37.500 9.87 0.00 32.50 3.69
149 150 5.945784 TCCTTAATGAACATTGAACCCTCTG 59.054 40.000 9.87 0.00 32.50 3.35
150 151 5.711976 CCTTAATGAACATTGAACCCTCTGT 59.288 40.000 9.87 0.00 32.50 3.41
151 152 6.884295 CCTTAATGAACATTGAACCCTCTGTA 59.116 38.462 9.87 0.00 32.50 2.74
152 153 7.393234 CCTTAATGAACATTGAACCCTCTGTAA 59.607 37.037 9.87 0.00 32.50 2.41
153 154 6.575162 AATGAACATTGAACCCTCTGTAAC 57.425 37.500 0.00 0.00 0.00 2.50
154 155 4.062293 TGAACATTGAACCCTCTGTAACG 58.938 43.478 0.00 0.00 0.00 3.18
155 156 3.053831 ACATTGAACCCTCTGTAACGG 57.946 47.619 0.00 0.00 0.00 4.44
156 157 2.635915 ACATTGAACCCTCTGTAACGGA 59.364 45.455 0.00 0.00 0.00 4.69
157 158 3.262420 CATTGAACCCTCTGTAACGGAG 58.738 50.000 0.00 0.00 36.69 4.63
163 164 1.817209 CTCTGTAACGGAGGGGAGC 59.183 63.158 0.00 0.00 33.57 4.70
164 165 0.684805 CTCTGTAACGGAGGGGAGCT 60.685 60.000 0.00 0.00 33.57 4.09
165 166 0.970937 TCTGTAACGGAGGGGAGCTG 60.971 60.000 0.00 0.00 0.00 4.24
166 167 1.961180 CTGTAACGGAGGGGAGCTGG 61.961 65.000 0.00 0.00 0.00 4.85
167 168 2.365105 TAACGGAGGGGAGCTGGG 60.365 66.667 0.00 0.00 0.00 4.45
168 169 3.995809 TAACGGAGGGGAGCTGGGG 62.996 68.421 0.00 0.00 0.00 4.96
183 184 3.075005 GGGTCCTGGCGCACTCTA 61.075 66.667 10.83 0.00 0.00 2.43
184 185 2.435693 GGGTCCTGGCGCACTCTAT 61.436 63.158 10.83 0.00 0.00 1.98
185 186 1.113517 GGGTCCTGGCGCACTCTATA 61.114 60.000 10.83 0.00 0.00 1.31
186 187 0.969894 GGTCCTGGCGCACTCTATAT 59.030 55.000 10.83 0.00 0.00 0.86
187 188 2.168496 GGTCCTGGCGCACTCTATATA 58.832 52.381 10.83 0.00 0.00 0.86
188 189 2.561419 GGTCCTGGCGCACTCTATATAA 59.439 50.000 10.83 0.00 0.00 0.98
189 190 3.367498 GGTCCTGGCGCACTCTATATAAG 60.367 52.174 10.83 0.00 0.00 1.73
190 191 3.256136 GTCCTGGCGCACTCTATATAAGT 59.744 47.826 10.83 0.00 0.00 2.24
191 192 3.506455 TCCTGGCGCACTCTATATAAGTC 59.494 47.826 10.83 0.00 0.00 3.01
192 193 3.255888 CCTGGCGCACTCTATATAAGTCA 59.744 47.826 10.83 0.00 0.00 3.41
193 194 4.230657 CTGGCGCACTCTATATAAGTCAC 58.769 47.826 10.83 0.00 0.00 3.67
194 195 3.005472 TGGCGCACTCTATATAAGTCACC 59.995 47.826 10.83 0.00 0.00 4.02
195 196 3.576648 GCGCACTCTATATAAGTCACCC 58.423 50.000 0.30 0.00 0.00 4.61
196 197 3.256136 GCGCACTCTATATAAGTCACCCT 59.744 47.826 0.30 0.00 0.00 4.34
197 198 4.616373 GCGCACTCTATATAAGTCACCCTC 60.616 50.000 0.30 0.00 0.00 4.30
198 199 4.082679 CGCACTCTATATAAGTCACCCTCC 60.083 50.000 0.00 0.00 0.00 4.30
199 200 5.081032 GCACTCTATATAAGTCACCCTCCT 58.919 45.833 0.00 0.00 0.00 3.69
200 201 5.184287 GCACTCTATATAAGTCACCCTCCTC 59.816 48.000 0.00 0.00 0.00 3.71
201 202 5.712917 CACTCTATATAAGTCACCCTCCTCC 59.287 48.000 0.00 0.00 0.00 4.30
202 203 5.617851 ACTCTATATAAGTCACCCTCCTCCT 59.382 44.000 0.00 0.00 0.00 3.69
203 204 6.142259 TCTATATAAGTCACCCTCCTCCTC 57.858 45.833 0.00 0.00 0.00 3.71
204 205 5.858408 TCTATATAAGTCACCCTCCTCCTCT 59.142 44.000 0.00 0.00 0.00 3.69
205 206 2.534042 TAAGTCACCCTCCTCCTCTG 57.466 55.000 0.00 0.00 0.00 3.35
206 207 0.252467 AAGTCACCCTCCTCCTCTGG 60.252 60.000 0.00 0.00 0.00 3.86
207 208 1.687493 GTCACCCTCCTCCTCTGGG 60.687 68.421 0.00 0.00 46.07 4.45
208 209 1.862138 TCACCCTCCTCCTCTGGGA 60.862 63.158 4.11 0.00 43.47 4.37
209 210 1.687493 CACCCTCCTCCTCTGGGAC 60.687 68.421 4.11 0.00 43.47 4.46
210 211 2.177518 ACCCTCCTCCTCTGGGACA 61.178 63.158 4.11 0.00 43.47 4.02
211 212 1.081092 CCCTCCTCCTCTGGGACAA 59.919 63.158 0.00 0.00 43.47 3.18
212 213 0.980231 CCCTCCTCCTCTGGGACAAG 60.980 65.000 0.00 0.00 43.47 3.16
213 214 0.980231 CCTCCTCCTCTGGGACAAGG 60.980 65.000 0.00 0.00 38.70 3.61
214 215 0.980231 CTCCTCCTCTGGGACAAGGG 60.980 65.000 0.00 0.00 38.70 3.95
215 216 1.229658 CCTCCTCTGGGACAAGGGT 60.230 63.158 0.00 0.00 38.70 4.34
216 217 0.842467 CCTCCTCTGGGACAAGGGTT 60.842 60.000 0.00 0.00 38.70 4.11
217 218 0.615850 CTCCTCTGGGACAAGGGTTC 59.384 60.000 0.00 0.00 38.70 3.62
218 219 1.192146 TCCTCTGGGACAAGGGTTCG 61.192 60.000 0.00 0.00 38.70 3.95
219 220 1.376037 CTCTGGGACAAGGGTTCGC 60.376 63.158 0.00 0.00 38.70 4.70
220 221 2.111999 CTCTGGGACAAGGGTTCGCA 62.112 60.000 0.00 0.00 38.70 5.10
221 222 1.966451 CTGGGACAAGGGTTCGCAC 60.966 63.158 0.00 0.00 38.70 5.34
222 223 2.671963 GGGACAAGGGTTCGCACC 60.672 66.667 0.00 0.00 43.37 5.01
231 232 3.391736 GGTTCGCACCCCCTATTAC 57.608 57.895 0.00 0.00 37.03 1.89
232 233 0.542805 GGTTCGCACCCCCTATTACA 59.457 55.000 0.00 0.00 37.03 2.41
233 234 1.142262 GGTTCGCACCCCCTATTACAT 59.858 52.381 0.00 0.00 37.03 2.29
234 235 2.490991 GTTCGCACCCCCTATTACATC 58.509 52.381 0.00 0.00 0.00 3.06
235 236 1.796017 TCGCACCCCCTATTACATCA 58.204 50.000 0.00 0.00 0.00 3.07
236 237 1.414919 TCGCACCCCCTATTACATCAC 59.585 52.381 0.00 0.00 0.00 3.06
237 238 1.140052 CGCACCCCCTATTACATCACA 59.860 52.381 0.00 0.00 0.00 3.58
238 239 2.572290 GCACCCCCTATTACATCACAC 58.428 52.381 0.00 0.00 0.00 3.82
239 240 2.092646 GCACCCCCTATTACATCACACA 60.093 50.000 0.00 0.00 0.00 3.72
240 241 3.541632 CACCCCCTATTACATCACACAC 58.458 50.000 0.00 0.00 0.00 3.82
241 242 3.054728 CACCCCCTATTACATCACACACA 60.055 47.826 0.00 0.00 0.00 3.72
242 243 3.785887 ACCCCCTATTACATCACACACAT 59.214 43.478 0.00 0.00 0.00 3.21
243 244 4.972568 ACCCCCTATTACATCACACACATA 59.027 41.667 0.00 0.00 0.00 2.29
244 245 5.610982 ACCCCCTATTACATCACACACATAT 59.389 40.000 0.00 0.00 0.00 1.78
245 246 6.790461 ACCCCCTATTACATCACACACATATA 59.210 38.462 0.00 0.00 0.00 0.86
246 247 7.293771 ACCCCCTATTACATCACACACATATAA 59.706 37.037 0.00 0.00 0.00 0.98
247 248 8.328758 CCCCCTATTACATCACACACATATAAT 58.671 37.037 0.00 0.00 0.00 1.28
248 249 9.383519 CCCCTATTACATCACACACATATAATC 57.616 37.037 0.00 0.00 0.00 1.75
249 250 9.383519 CCCTATTACATCACACACATATAATCC 57.616 37.037 0.00 0.00 0.00 3.01
250 251 9.942850 CCTATTACATCACACACATATAATCCA 57.057 33.333 0.00 0.00 0.00 3.41
253 254 8.887036 TTACATCACACACATATAATCCAGTC 57.113 34.615 0.00 0.00 0.00 3.51
254 255 5.985530 ACATCACACACATATAATCCAGTCG 59.014 40.000 0.00 0.00 0.00 4.18
255 256 5.845391 TCACACACATATAATCCAGTCGA 57.155 39.130 0.00 0.00 0.00 4.20
256 257 5.588240 TCACACACATATAATCCAGTCGAC 58.412 41.667 7.70 7.70 0.00 4.20
257 258 4.745125 CACACACATATAATCCAGTCGACC 59.255 45.833 13.01 0.00 0.00 4.79
258 259 4.404394 ACACACATATAATCCAGTCGACCA 59.596 41.667 13.01 0.00 0.00 4.02
259 260 4.745125 CACACATATAATCCAGTCGACCAC 59.255 45.833 13.01 0.00 0.00 4.16
260 261 4.202223 ACACATATAATCCAGTCGACCACC 60.202 45.833 13.01 0.00 0.00 4.61
261 262 4.039245 CACATATAATCCAGTCGACCACCT 59.961 45.833 13.01 0.00 0.00 4.00
262 263 4.281182 ACATATAATCCAGTCGACCACCTC 59.719 45.833 13.01 0.00 0.00 3.85
263 264 1.481871 TAATCCAGTCGACCACCTCC 58.518 55.000 13.01 0.00 0.00 4.30
264 265 1.605058 AATCCAGTCGACCACCTCCG 61.605 60.000 13.01 0.00 0.00 4.63
265 266 3.760035 CCAGTCGACCACCTCCGG 61.760 72.222 13.01 0.00 0.00 5.14
266 267 3.760035 CAGTCGACCACCTCCGGG 61.760 72.222 13.01 0.00 38.88 5.73
271 272 4.394712 GACCACCTCCGGGCACTG 62.395 72.222 0.00 0.00 32.44 3.66
272 273 4.954118 ACCACCTCCGGGCACTGA 62.954 66.667 0.00 0.00 36.31 3.41
273 274 4.087892 CCACCTCCGGGCACTGAG 62.088 72.222 0.00 0.00 36.31 3.35
274 275 2.997315 CACCTCCGGGCACTGAGA 60.997 66.667 9.24 0.00 36.31 3.27
275 276 2.997897 ACCTCCGGGCACTGAGAC 60.998 66.667 9.24 0.00 36.31 3.36
276 277 4.135153 CCTCCGGGCACTGAGACG 62.135 72.222 9.24 0.00 36.31 4.18
277 278 3.374402 CTCCGGGCACTGAGACGT 61.374 66.667 0.18 0.00 36.31 4.34
278 279 2.034532 TCCGGGCACTGAGACGTA 59.965 61.111 0.00 0.00 36.31 3.57
279 280 1.994507 CTCCGGGCACTGAGACGTAG 61.995 65.000 0.18 0.00 36.31 3.51
280 281 2.490217 CGGGCACTGAGACGTAGG 59.510 66.667 0.00 0.00 36.31 3.18
281 282 2.893398 GGGCACTGAGACGTAGGG 59.107 66.667 0.00 0.00 0.00 3.53
282 283 2.184579 GGCACTGAGACGTAGGGC 59.815 66.667 2.29 2.29 43.79 5.19
283 284 2.352032 GGCACTGAGACGTAGGGCT 61.352 63.158 10.69 0.00 43.98 5.19
284 285 1.035932 GGCACTGAGACGTAGGGCTA 61.036 60.000 10.69 0.00 43.98 3.93
285 286 1.033574 GCACTGAGACGTAGGGCTAT 58.966 55.000 3.76 0.00 41.33 2.97
286 287 1.409427 GCACTGAGACGTAGGGCTATT 59.591 52.381 3.76 0.00 41.33 1.73
287 288 2.621998 GCACTGAGACGTAGGGCTATTA 59.378 50.000 3.76 0.00 41.33 0.98
288 289 3.550436 GCACTGAGACGTAGGGCTATTAC 60.550 52.174 3.76 0.00 41.33 1.89
289 290 3.884091 CACTGAGACGTAGGGCTATTACT 59.116 47.826 0.00 0.00 0.00 2.24
290 291 4.338682 CACTGAGACGTAGGGCTATTACTT 59.661 45.833 0.00 0.00 0.00 2.24
291 292 4.579753 ACTGAGACGTAGGGCTATTACTTC 59.420 45.833 0.00 0.00 0.00 3.01
292 293 3.887716 TGAGACGTAGGGCTATTACTTCC 59.112 47.826 0.00 0.00 0.00 3.46
293 294 4.143543 GAGACGTAGGGCTATTACTTCCT 58.856 47.826 0.00 0.00 0.00 3.36
294 295 4.143543 AGACGTAGGGCTATTACTTCCTC 58.856 47.826 0.00 0.00 0.00 3.71
295 296 4.141205 AGACGTAGGGCTATTACTTCCTCT 60.141 45.833 0.00 0.00 0.00 3.69
296 297 3.890147 ACGTAGGGCTATTACTTCCTCTG 59.110 47.826 0.00 0.00 0.00 3.35
297 298 4.142790 CGTAGGGCTATTACTTCCTCTGA 58.857 47.826 0.00 0.00 0.00 3.27
298 299 4.216687 CGTAGGGCTATTACTTCCTCTGAG 59.783 50.000 0.00 0.00 0.00 3.35
299 300 4.544564 AGGGCTATTACTTCCTCTGAGA 57.455 45.455 6.17 0.00 0.00 3.27
300 301 4.884961 AGGGCTATTACTTCCTCTGAGAA 58.115 43.478 6.17 0.00 0.00 2.87
302 303 4.039852 GGGCTATTACTTCCTCTGAGAAGG 59.960 50.000 6.17 0.00 46.24 3.46
303 304 4.039852 GGCTATTACTTCCTCTGAGAAGGG 59.960 50.000 6.17 0.00 46.24 3.95
304 305 4.651962 GCTATTACTTCCTCTGAGAAGGGT 59.348 45.833 6.17 2.51 46.24 4.34
305 306 5.221362 GCTATTACTTCCTCTGAGAAGGGTC 60.221 48.000 6.17 0.00 46.24 4.46
306 307 4.405756 TTACTTCCTCTGAGAAGGGTCT 57.594 45.455 6.17 0.00 46.24 3.85
307 308 5.531753 TTACTTCCTCTGAGAAGGGTCTA 57.468 43.478 6.17 0.00 46.24 2.59
308 309 4.405756 ACTTCCTCTGAGAAGGGTCTAA 57.594 45.455 6.17 0.00 46.24 2.10
309 310 4.753186 ACTTCCTCTGAGAAGGGTCTAAA 58.247 43.478 6.17 0.00 46.24 1.85
310 311 4.528987 ACTTCCTCTGAGAAGGGTCTAAAC 59.471 45.833 6.17 0.00 46.24 2.01
311 312 4.405756 TCCTCTGAGAAGGGTCTAAACT 57.594 45.455 6.17 0.00 37.02 2.66
312 313 4.345854 TCCTCTGAGAAGGGTCTAAACTC 58.654 47.826 6.17 0.00 37.02 3.01
313 314 4.090090 CCTCTGAGAAGGGTCTAAACTCA 58.910 47.826 6.17 0.00 32.80 3.41
314 315 4.714308 CCTCTGAGAAGGGTCTAAACTCAT 59.286 45.833 6.17 0.00 37.07 2.90
315 316 5.894393 CCTCTGAGAAGGGTCTAAACTCATA 59.106 44.000 6.17 0.00 37.07 2.15
316 317 6.381420 CCTCTGAGAAGGGTCTAAACTCATAA 59.619 42.308 6.17 0.00 37.07 1.90
317 318 7.093289 CCTCTGAGAAGGGTCTAAACTCATAAA 60.093 40.741 6.17 0.00 37.07 1.40
318 319 8.380742 TCTGAGAAGGGTCTAAACTCATAAAT 57.619 34.615 0.00 0.00 37.07 1.40
319 320 8.478877 TCTGAGAAGGGTCTAAACTCATAAATC 58.521 37.037 0.00 0.00 37.07 2.17
320 321 8.380742 TGAGAAGGGTCTAAACTCATAAATCT 57.619 34.615 0.00 0.00 32.80 2.40
321 322 8.478877 TGAGAAGGGTCTAAACTCATAAATCTC 58.521 37.037 0.00 0.00 32.80 2.75
322 323 7.493367 AGAAGGGTCTAAACTCATAAATCTCG 58.507 38.462 0.00 0.00 29.93 4.04
323 324 5.602628 AGGGTCTAAACTCATAAATCTCGC 58.397 41.667 0.00 0.00 0.00 5.03
324 325 4.444720 GGGTCTAAACTCATAAATCTCGCG 59.555 45.833 0.00 0.00 0.00 5.87
325 326 4.085004 GGTCTAAACTCATAAATCTCGCGC 60.085 45.833 0.00 0.00 0.00 6.86
326 327 2.998668 AAACTCATAAATCTCGCGCG 57.001 45.000 26.76 26.76 0.00 6.86
327 328 1.922570 AACTCATAAATCTCGCGCGT 58.077 45.000 30.98 12.90 0.00 6.01
328 329 2.768833 ACTCATAAATCTCGCGCGTA 57.231 45.000 30.98 19.68 0.00 4.42
329 330 2.382519 ACTCATAAATCTCGCGCGTAC 58.617 47.619 30.98 0.00 0.00 3.67
330 331 2.223409 ACTCATAAATCTCGCGCGTACA 60.223 45.455 30.98 15.08 0.00 2.90
331 332 2.980476 CTCATAAATCTCGCGCGTACAT 59.020 45.455 30.98 16.75 0.00 2.29
332 333 2.977829 TCATAAATCTCGCGCGTACATC 59.022 45.455 30.98 0.00 0.00 3.06
333 334 2.768833 TAAATCTCGCGCGTACATCT 57.231 45.000 30.98 13.42 0.00 2.90
334 335 1.922570 AAATCTCGCGCGTACATCTT 58.077 45.000 30.98 13.56 0.00 2.40
335 336 1.478137 AATCTCGCGCGTACATCTTC 58.522 50.000 30.98 0.00 0.00 2.87
336 337 0.380733 ATCTCGCGCGTACATCTTCA 59.619 50.000 30.98 5.69 0.00 3.02
337 338 0.522705 TCTCGCGCGTACATCTTCAC 60.523 55.000 30.98 0.00 0.00 3.18
338 339 1.472276 CTCGCGCGTACATCTTCACC 61.472 60.000 30.98 0.00 0.00 4.02
339 340 1.803922 CGCGCGTACATCTTCACCA 60.804 57.895 24.19 0.00 0.00 4.17
340 341 1.145759 CGCGCGTACATCTTCACCAT 61.146 55.000 24.19 0.00 0.00 3.55
341 342 1.847818 GCGCGTACATCTTCACCATA 58.152 50.000 8.43 0.00 0.00 2.74
342 343 1.787155 GCGCGTACATCTTCACCATAG 59.213 52.381 8.43 0.00 0.00 2.23
343 344 1.787155 CGCGTACATCTTCACCATAGC 59.213 52.381 0.00 0.00 0.00 2.97
344 345 2.543861 CGCGTACATCTTCACCATAGCT 60.544 50.000 0.00 0.00 0.00 3.32
345 346 2.797156 GCGTACATCTTCACCATAGCTG 59.203 50.000 0.00 0.00 0.00 4.24
346 347 3.490933 GCGTACATCTTCACCATAGCTGA 60.491 47.826 0.00 0.00 0.00 4.26
347 348 4.294232 CGTACATCTTCACCATAGCTGAG 58.706 47.826 0.00 0.00 0.00 3.35
348 349 4.036852 CGTACATCTTCACCATAGCTGAGA 59.963 45.833 0.00 0.00 0.00 3.27
349 350 5.278709 CGTACATCTTCACCATAGCTGAGAT 60.279 44.000 0.00 0.00 0.00 2.75
350 351 5.212532 ACATCTTCACCATAGCTGAGATC 57.787 43.478 0.00 0.00 0.00 2.75
351 352 4.900652 ACATCTTCACCATAGCTGAGATCT 59.099 41.667 0.00 0.00 0.00 2.75
352 353 5.366186 ACATCTTCACCATAGCTGAGATCTT 59.634 40.000 0.00 0.00 0.00 2.40
353 354 5.273674 TCTTCACCATAGCTGAGATCTTG 57.726 43.478 0.00 0.00 0.00 3.02
354 355 3.465742 TCACCATAGCTGAGATCTTGC 57.534 47.619 12.08 12.08 0.00 4.01
355 356 2.103771 TCACCATAGCTGAGATCTTGCC 59.896 50.000 15.19 0.00 0.00 4.52
356 357 2.104451 CACCATAGCTGAGATCTTGCCT 59.896 50.000 15.19 6.62 0.00 4.75
357 358 2.368221 ACCATAGCTGAGATCTTGCCTC 59.632 50.000 15.19 0.00 0.00 4.70
358 359 2.633967 CCATAGCTGAGATCTTGCCTCT 59.366 50.000 15.19 4.31 0.00 3.69
359 360 3.306225 CCATAGCTGAGATCTTGCCTCTC 60.306 52.174 15.19 0.00 39.69 3.20
360 361 1.122227 AGCTGAGATCTTGCCTCTCC 58.878 55.000 15.19 0.00 38.70 3.71
361 362 0.829333 GCTGAGATCTTGCCTCTCCA 59.171 55.000 0.00 0.00 38.70 3.86
362 363 1.417145 GCTGAGATCTTGCCTCTCCAT 59.583 52.381 0.00 0.00 38.70 3.41
363 364 2.632028 GCTGAGATCTTGCCTCTCCATA 59.368 50.000 0.00 0.00 38.70 2.74
364 365 3.554752 GCTGAGATCTTGCCTCTCCATAC 60.555 52.174 0.00 0.00 38.70 2.39
365 366 3.896888 CTGAGATCTTGCCTCTCCATACT 59.103 47.826 0.00 0.00 38.70 2.12
366 367 4.293494 TGAGATCTTGCCTCTCCATACTT 58.707 43.478 0.00 0.00 38.70 2.24
367 368 5.458595 TGAGATCTTGCCTCTCCATACTTA 58.541 41.667 0.00 0.00 38.70 2.24
368 369 5.303078 TGAGATCTTGCCTCTCCATACTTAC 59.697 44.000 0.00 0.00 38.70 2.34
369 370 4.591072 AGATCTTGCCTCTCCATACTTACC 59.409 45.833 0.00 0.00 0.00 2.85
370 371 3.039011 TCTTGCCTCTCCATACTTACCC 58.961 50.000 0.00 0.00 0.00 3.69
371 372 1.802553 TGCCTCTCCATACTTACCCC 58.197 55.000 0.00 0.00 0.00 4.95
372 373 1.057471 GCCTCTCCATACTTACCCCC 58.943 60.000 0.00 0.00 0.00 5.40
373 374 1.414685 GCCTCTCCATACTTACCCCCT 60.415 57.143 0.00 0.00 0.00 4.79
374 375 2.964803 GCCTCTCCATACTTACCCCCTT 60.965 54.545 0.00 0.00 0.00 3.95
375 376 3.394645 CCTCTCCATACTTACCCCCTTT 58.605 50.000 0.00 0.00 0.00 3.11
376 377 3.136626 CCTCTCCATACTTACCCCCTTTG 59.863 52.174 0.00 0.00 0.00 2.77
377 378 3.780850 CTCTCCATACTTACCCCCTTTGT 59.219 47.826 0.00 0.00 0.00 2.83
378 379 4.962839 TCTCCATACTTACCCCCTTTGTA 58.037 43.478 0.00 0.00 0.00 2.41
379 380 4.718276 TCTCCATACTTACCCCCTTTGTAC 59.282 45.833 0.00 0.00 0.00 2.90
380 381 4.702196 TCCATACTTACCCCCTTTGTACT 58.298 43.478 0.00 0.00 0.00 2.73
381 382 4.472108 TCCATACTTACCCCCTTTGTACTG 59.528 45.833 0.00 0.00 0.00 2.74
382 383 4.226620 CCATACTTACCCCCTTTGTACTGT 59.773 45.833 0.00 0.00 0.00 3.55
383 384 5.425630 CATACTTACCCCCTTTGTACTGTC 58.574 45.833 0.00 0.00 0.00 3.51
384 385 3.320129 ACTTACCCCCTTTGTACTGTCA 58.680 45.455 0.00 0.00 0.00 3.58
385 386 3.326880 ACTTACCCCCTTTGTACTGTCAG 59.673 47.826 0.00 0.00 0.00 3.51
386 387 1.815757 ACCCCCTTTGTACTGTCAGT 58.184 50.000 10.99 10.99 0.00 3.41
387 388 1.697982 ACCCCCTTTGTACTGTCAGTC 59.302 52.381 9.26 2.26 0.00 3.51
388 389 1.978580 CCCCCTTTGTACTGTCAGTCT 59.021 52.381 9.26 0.00 0.00 3.24
389 390 2.372172 CCCCCTTTGTACTGTCAGTCTT 59.628 50.000 9.26 0.00 0.00 3.01
390 391 3.581332 CCCCCTTTGTACTGTCAGTCTTA 59.419 47.826 9.26 0.00 0.00 2.10
391 392 4.322801 CCCCCTTTGTACTGTCAGTCTTAG 60.323 50.000 9.26 3.38 0.00 2.18
392 393 4.527038 CCCCTTTGTACTGTCAGTCTTAGA 59.473 45.833 9.26 0.00 0.00 2.10
393 394 5.011738 CCCCTTTGTACTGTCAGTCTTAGAA 59.988 44.000 9.26 0.00 0.00 2.10
394 395 5.927115 CCCTTTGTACTGTCAGTCTTAGAAC 59.073 44.000 9.26 1.41 0.00 3.01
395 396 5.927115 CCTTTGTACTGTCAGTCTTAGAACC 59.073 44.000 9.26 0.00 0.00 3.62
396 397 6.462487 CCTTTGTACTGTCAGTCTTAGAACCA 60.462 42.308 9.26 0.00 0.00 3.67
397 398 5.449107 TGTACTGTCAGTCTTAGAACCAC 57.551 43.478 9.26 0.00 0.00 4.16
398 399 3.644884 ACTGTCAGTCTTAGAACCACG 57.355 47.619 0.00 0.00 0.00 4.94
399 400 3.220110 ACTGTCAGTCTTAGAACCACGA 58.780 45.455 0.00 0.00 0.00 4.35
400 401 3.004524 ACTGTCAGTCTTAGAACCACGAC 59.995 47.826 0.00 0.00 0.00 4.34
401 402 2.953648 TGTCAGTCTTAGAACCACGACA 59.046 45.455 0.00 0.00 0.00 4.35
402 403 3.382227 TGTCAGTCTTAGAACCACGACAA 59.618 43.478 0.00 0.00 0.00 3.18
403 404 3.982058 GTCAGTCTTAGAACCACGACAAG 59.018 47.826 0.00 0.00 0.00 3.16
404 405 2.731976 CAGTCTTAGAACCACGACAAGC 59.268 50.000 0.00 0.00 0.00 4.01
527 528 0.692419 AGCATAGGAGGGACTGGTGG 60.692 60.000 0.00 0.00 41.55 4.61
558 559 4.437587 GCCAGGGCAGCCTGATGT 62.438 66.667 12.43 0.00 39.96 3.06
570 571 1.381928 CCTGATGTGGGCATGTCAGC 61.382 60.000 0.00 0.00 35.07 4.26
573 574 1.434622 GATGTGGGCATGTCAGCGAG 61.435 60.000 0.00 0.00 35.07 5.03
606 607 4.440839 CAAAGCCCCTTCACTTTGTATC 57.559 45.455 7.20 0.00 44.90 2.24
613 614 3.439129 CCCTTCACTTTGTATCCGGTTTC 59.561 47.826 0.00 0.00 0.00 2.78
636 638 9.463902 TTTCCGAAAATAATATAACCTGACCAA 57.536 29.630 0.00 0.00 0.00 3.67
648 650 1.732259 CCTGACCAAGACGTATGCAAC 59.268 52.381 0.00 0.00 0.00 4.17
662 664 2.033602 CAACCGGTTCCAGGGTCC 59.966 66.667 19.24 0.00 34.85 4.46
669 672 3.235481 TTCCAGGGTCCGCGTTGA 61.235 61.111 4.92 0.00 0.00 3.18
678 681 2.745884 CCGCGTTGAAGATGCCCA 60.746 61.111 4.92 0.00 36.93 5.36
687 729 4.202441 GTTGAAGATGCCCATACTGATGT 58.798 43.478 0.00 0.00 0.00 3.06
688 730 4.077300 TGAAGATGCCCATACTGATGTC 57.923 45.455 0.00 0.00 0.00 3.06
755 805 1.445095 GAGGCCATCGACAGAGCAT 59.555 57.895 5.01 0.00 0.00 3.79
864 914 2.101575 TTCGAACGGCCGAGATCG 59.898 61.111 35.90 33.12 39.90 3.69
944 999 2.961893 CGTCCCGTCCCATCCCAAA 61.962 63.158 0.00 0.00 0.00 3.28
945 1000 1.378119 GTCCCGTCCCATCCCAAAC 60.378 63.158 0.00 0.00 0.00 2.93
946 1001 1.540367 TCCCGTCCCATCCCAAACT 60.540 57.895 0.00 0.00 0.00 2.66
947 1002 1.378514 CCCGTCCCATCCCAAACTG 60.379 63.158 0.00 0.00 0.00 3.16
948 1003 1.682849 CCGTCCCATCCCAAACTGA 59.317 57.895 0.00 0.00 0.00 3.41
949 1004 0.676782 CCGTCCCATCCCAAACTGAC 60.677 60.000 0.00 0.00 0.00 3.51
950 1005 1.019278 CGTCCCATCCCAAACTGACG 61.019 60.000 0.00 0.00 39.44 4.35
951 1006 1.002624 TCCCATCCCAAACTGACGC 60.003 57.895 0.00 0.00 0.00 5.19
954 1009 1.303236 CATCCCAAACTGACGCCCA 60.303 57.895 0.00 0.00 0.00 5.36
992 1047 3.494254 ACCCCAAACTGACGCCCA 61.494 61.111 0.00 0.00 0.00 5.36
1112 1167 1.262640 GCCCTAACCCCGACTCTTCA 61.263 60.000 0.00 0.00 0.00 3.02
1126 1181 1.214062 CTTCAGAGCTTCGCGTCCT 59.786 57.895 5.77 0.08 0.00 3.85
1219 1274 1.171308 CGAGTTCAACGGGGAGACTA 58.829 55.000 0.00 0.00 0.00 2.59
1341 1396 2.740055 GTGTGCCTCGAGTGCCAG 60.740 66.667 19.09 2.80 0.00 4.85
1404 1459 2.866028 GTCTACGTCGTCGGCACT 59.134 61.111 0.00 0.00 41.85 4.40
1440 1495 4.664267 AGCCTGCCCTGTCCTCCA 62.664 66.667 0.00 0.00 0.00 3.86
1442 1497 2.608988 CCTGCCCTGTCCTCCAGT 60.609 66.667 0.00 0.00 39.74 4.00
1575 1640 8.726988 CAGTTCGGGATAATTTTACTCTTGAAA 58.273 33.333 0.00 0.00 0.00 2.69
1576 1641 9.292195 AGTTCGGGATAATTTTACTCTTGAAAA 57.708 29.630 0.00 0.00 0.00 2.29
1631 1696 1.886542 CCAAGCACAAAAGGTAGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
1686 1753 6.072175 TGCATTGTTTTTGGGCTTAGTACTAG 60.072 38.462 2.23 0.00 0.00 2.57
1693 1760 5.656213 TTGGGCTTAGTACTAGTTCTGTC 57.344 43.478 11.94 0.00 0.00 3.51
1722 1802 0.391263 GCAAGGGCGTTAGTACTGCT 60.391 55.000 5.39 0.00 0.00 4.24
1723 1803 1.134907 GCAAGGGCGTTAGTACTGCTA 60.135 52.381 5.39 0.00 0.00 3.49
1724 1804 2.537401 CAAGGGCGTTAGTACTGCTAC 58.463 52.381 5.39 0.16 0.00 3.58
1725 1805 1.109609 AGGGCGTTAGTACTGCTACC 58.890 55.000 5.39 1.94 0.00 3.18
1726 1806 0.103755 GGGCGTTAGTACTGCTACCC 59.896 60.000 5.39 7.83 0.00 3.69
1727 1807 0.103755 GGCGTTAGTACTGCTACCCC 59.896 60.000 5.39 0.00 0.00 4.95
1744 1835 1.693606 CCCCACTGGTTTTGCTTTGAT 59.306 47.619 0.00 0.00 0.00 2.57
1823 1915 7.119699 TCGAATGATAACTTGACTGCTGATTTT 59.880 33.333 0.00 0.00 0.00 1.82
2168 2268 7.389803 TGATCGTTGGTTCATTACATTGAAT 57.610 32.000 0.00 0.00 37.88 2.57
2203 2303 6.068010 TGTGTGAATCAAATTACCAGGAAGT 58.932 36.000 0.00 0.00 0.00 3.01
2223 2323 8.325046 AGGAAGTGCTATAAGAATTTTGAGTCT 58.675 33.333 0.00 0.00 0.00 3.24
2238 2338 2.802247 TGAGTCTGTTGTGCTTCAATCG 59.198 45.455 0.00 0.00 38.38 3.34
2250 2352 7.234187 TGTGCTTCAATCGTTATCTGTTATC 57.766 36.000 0.00 0.00 0.00 1.75
2281 2383 7.775053 AATGGTGAAGAAAGCCACTTAATAA 57.225 32.000 0.00 0.00 34.84 1.40
2283 2385 6.539173 TGGTGAAGAAAGCCACTTAATAAGA 58.461 36.000 7.06 0.00 33.99 2.10
2285 2387 6.655425 GGTGAAGAAAGCCACTTAATAAGACT 59.345 38.462 7.06 0.00 33.99 3.24
2308 2410 7.801104 ACTTTGGGGTTCACAAAATTAATCTT 58.199 30.769 0.00 0.00 37.37 2.40
2364 2466 9.638176 ATCTCTAATACTACCTCCGTTTCTAAA 57.362 33.333 0.00 0.00 0.00 1.85
2373 2475 9.193806 ACTACCTCCGTTTCTAAATATAAGACA 57.806 33.333 0.00 0.00 0.00 3.41
2419 2521 7.608761 ACTGCCAAAACGTCTTATATTTAGGAA 59.391 33.333 0.00 0.00 0.00 3.36
2549 2708 9.673454 CTACTTGAGTTAATTGTGGTAAAAACC 57.327 33.333 0.00 0.00 0.00 3.27
2573 2732 7.094933 ACCGAAGTTGTTCATAATTTGACCTAC 60.095 37.037 0.00 0.00 32.84 3.18
2574 2733 7.119262 CCGAAGTTGTTCATAATTTGACCTACT 59.881 37.037 0.00 0.00 35.08 2.57
2659 2818 8.082242 ACACCAATCAAGCACTTCTAATAAAAC 58.918 33.333 0.00 0.00 0.00 2.43
2660 2819 8.081633 CACCAATCAAGCACTTCTAATAAAACA 58.918 33.333 0.00 0.00 0.00 2.83
2661 2820 8.806146 ACCAATCAAGCACTTCTAATAAAACAT 58.194 29.630 0.00 0.00 0.00 2.71
2678 2847 6.767524 AAAACATATTTGTTCGCTGGGATA 57.232 33.333 1.83 0.00 45.30 2.59
2786 2955 9.113838 CTTCATCTAAGTGCCATGTATTTAACT 57.886 33.333 0.00 0.00 0.00 2.24
3244 3417 8.603898 TGAGTTTATCATTCAGAAGGGTACTA 57.396 34.615 0.00 0.00 31.12 1.82
3324 3502 7.037730 TCCAATTTGTTCCCACATGGATAAATT 60.038 33.333 0.00 1.00 44.66 1.82
3374 3552 7.745620 TCTCTATGCATCTAATAGAACGACA 57.254 36.000 0.19 0.00 36.46 4.35
3625 3820 3.541242 ATGGACATTGGACCCAAAAGA 57.459 42.857 5.49 0.00 39.55 2.52
3697 3892 0.108041 TGATTAAGGACCCGTTCGGC 60.108 55.000 5.66 0.00 33.26 5.54
3787 4007 2.997897 GTGGAGCGGAGGGACACT 60.998 66.667 0.00 0.00 0.00 3.55
3812 4032 2.367567 CGGGCCCTAAAGTTAGAGCATA 59.632 50.000 22.43 0.00 36.36 3.14
3907 4127 5.368145 TCAGCATGTCATATTGGTCCTTAC 58.632 41.667 0.00 0.00 37.40 2.34
3910 4130 4.757149 GCATGTCATATTGGTCCTTACTCC 59.243 45.833 0.00 0.00 0.00 3.85
4366 4664 7.496529 TGTGAGTTCCTTCAAAATTACTCTG 57.503 36.000 0.00 0.00 34.56 3.35
4367 4665 7.054124 TGTGAGTTCCTTCAAAATTACTCTGT 58.946 34.615 0.00 0.00 34.56 3.41
4401 4699 6.810182 AGCATTTTGTGTTGCTATTCTCAATC 59.190 34.615 0.00 0.00 46.92 2.67
4596 4897 9.425577 TCTAACAACATCATTTCGTGTGTTATA 57.574 29.630 0.00 0.00 33.39 0.98
4646 4947 8.336801 ACTATTTTAGATCACTTTGGTTGGTC 57.663 34.615 0.00 0.00 0.00 4.02
4717 5019 3.632604 TCAAATTTCCGTGCAGGTACAAA 59.367 39.130 5.57 2.21 41.99 2.83
4855 5157 3.072330 ACAGTGTATCCACCAATGTGTCA 59.928 43.478 0.00 0.00 42.88 3.58
4900 5202 7.931407 TCATGTGTAGTCTCTAAAAAGCAAAGA 59.069 33.333 0.00 0.00 0.00 2.52
4990 5293 6.987992 ACAAATGAAAGAACAATTCACTGCAT 59.012 30.769 0.00 0.00 39.43 3.96
5003 5306 4.019792 TCACTGCATTGTACACTGGATT 57.980 40.909 14.33 3.77 0.00 3.01
5039 5342 7.148069 CCAAAGCTTTCCTATTTTACTAGGGTG 60.148 40.741 9.23 0.00 39.08 4.61
5040 5343 6.002653 AGCTTTCCTATTTTACTAGGGTGG 57.997 41.667 0.00 0.00 39.08 4.61
5041 5344 4.579340 GCTTTCCTATTTTACTAGGGTGGC 59.421 45.833 0.00 0.00 39.08 5.01
5042 5345 5.631717 GCTTTCCTATTTTACTAGGGTGGCT 60.632 44.000 0.00 0.00 39.08 4.75
5200 5505 2.771089 CATCACCGGTCATTGGATAGG 58.229 52.381 2.59 0.00 0.00 2.57
5201 5506 1.874129 TCACCGGTCATTGGATAGGT 58.126 50.000 2.59 0.00 36.50 3.08
5206 5593 3.134081 ACCGGTCATTGGATAGGTTAGTG 59.866 47.826 0.00 0.00 33.63 2.74
5233 5620 5.880901 AGTTTTGGTTGTCTCCATACAGAT 58.119 37.500 0.00 0.00 37.33 2.90
5242 5629 4.223700 TGTCTCCATACAGATGTTTGCTCT 59.776 41.667 0.00 0.00 0.00 4.09
5251 5638 5.368145 ACAGATGTTTGCTCTCACAAGTTA 58.632 37.500 0.00 0.00 0.00 2.24
5274 5665 1.242665 TTGCATGATGGCTGACGCAA 61.243 50.000 0.00 0.00 37.05 4.85
5361 5752 3.766591 AGAAACATGTGGTTGGTCAAACA 59.233 39.130 0.00 0.00 40.35 2.83
5380 5775 6.882140 TCAAACAACCCGATGTAACAGATAAT 59.118 34.615 0.00 0.00 32.02 1.28
5389 5784 6.366332 CCGATGTAACAGATAATTAGCTCCAC 59.634 42.308 0.00 0.17 0.00 4.02
5406 5801 1.402325 CCACGCAGTACTCGTCATGAA 60.402 52.381 14.68 0.00 41.61 2.57
5444 5839 8.970859 ACAGTATAAGTATTAGTACGTGGACT 57.029 34.615 0.00 0.00 35.92 3.85
5445 5840 8.834465 ACAGTATAAGTATTAGTACGTGGACTG 58.166 37.037 17.26 17.26 39.42 3.51
5446 5841 9.049523 CAGTATAAGTATTAGTACGTGGACTGA 57.950 37.037 15.43 0.00 37.87 3.41
5447 5842 9.050601 AGTATAAGTATTAGTACGTGGACTGAC 57.949 37.037 0.00 0.00 35.92 3.51
5573 5973 0.622136 AGAACCCGATAAACCCCCAC 59.378 55.000 0.00 0.00 0.00 4.61
5586 5993 1.132881 ACCCCCACACAAATCAACCAT 60.133 47.619 0.00 0.00 0.00 3.55
5617 6026 2.960170 GCAAGTGCAGCCCTGAAG 59.040 61.111 0.00 0.00 41.59 3.02
5816 6225 2.182030 CCGTCGGACTGGAAGAGC 59.818 66.667 4.91 0.00 37.43 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.642432 TCATAGGTCGAGTGATCTTCATAAAAT 58.358 33.333 0.00 0.00 36.75 1.82
1 2 8.007405 TCATAGGTCGAGTGATCTTCATAAAA 57.993 34.615 0.00 0.00 36.75 1.52
2 3 7.582667 TCATAGGTCGAGTGATCTTCATAAA 57.417 36.000 0.00 0.00 36.75 1.40
3 4 7.502561 TCTTCATAGGTCGAGTGATCTTCATAA 59.497 37.037 0.00 0.00 36.75 1.90
4 5 6.998673 TCTTCATAGGTCGAGTGATCTTCATA 59.001 38.462 0.00 0.00 36.75 2.15
5 6 5.830457 TCTTCATAGGTCGAGTGATCTTCAT 59.170 40.000 0.00 0.00 36.75 2.57
6 7 5.066634 GTCTTCATAGGTCGAGTGATCTTCA 59.933 44.000 0.00 0.00 36.75 3.02
7 8 5.506649 GGTCTTCATAGGTCGAGTGATCTTC 60.507 48.000 0.00 0.00 36.75 2.87
8 9 4.339814 GGTCTTCATAGGTCGAGTGATCTT 59.660 45.833 0.00 0.00 36.75 2.40
9 10 3.886505 GGTCTTCATAGGTCGAGTGATCT 59.113 47.826 0.00 0.00 39.47 2.75
10 11 3.632604 TGGTCTTCATAGGTCGAGTGATC 59.367 47.826 0.00 0.00 0.00 2.92
11 12 3.632333 TGGTCTTCATAGGTCGAGTGAT 58.368 45.455 0.00 0.00 0.00 3.06
12 13 3.081710 TGGTCTTCATAGGTCGAGTGA 57.918 47.619 0.00 0.00 0.00 3.41
13 14 3.444034 TCTTGGTCTTCATAGGTCGAGTG 59.556 47.826 0.00 0.00 0.00 3.51
14 15 3.697045 CTCTTGGTCTTCATAGGTCGAGT 59.303 47.826 0.00 0.00 0.00 4.18
15 16 3.490078 GCTCTTGGTCTTCATAGGTCGAG 60.490 52.174 0.00 0.00 0.00 4.04
16 17 2.427453 GCTCTTGGTCTTCATAGGTCGA 59.573 50.000 0.00 0.00 0.00 4.20
17 18 2.482142 GGCTCTTGGTCTTCATAGGTCG 60.482 54.545 0.00 0.00 0.00 4.79
18 19 2.501723 TGGCTCTTGGTCTTCATAGGTC 59.498 50.000 0.00 0.00 0.00 3.85
19 20 2.503356 CTGGCTCTTGGTCTTCATAGGT 59.497 50.000 0.00 0.00 0.00 3.08
20 21 2.158842 CCTGGCTCTTGGTCTTCATAGG 60.159 54.545 0.00 0.00 0.00 2.57
21 22 2.744494 GCCTGGCTCTTGGTCTTCATAG 60.744 54.545 12.43 0.00 0.00 2.23
22 23 1.210478 GCCTGGCTCTTGGTCTTCATA 59.790 52.381 12.43 0.00 0.00 2.15
23 24 0.034670 GCCTGGCTCTTGGTCTTCAT 60.035 55.000 12.43 0.00 0.00 2.57
24 25 1.376466 GCCTGGCTCTTGGTCTTCA 59.624 57.895 12.43 0.00 0.00 3.02
25 26 1.743252 CGCCTGGCTCTTGGTCTTC 60.743 63.158 17.92 0.00 0.00 2.87
26 27 2.348998 CGCCTGGCTCTTGGTCTT 59.651 61.111 17.92 0.00 0.00 3.01
27 28 3.710722 CCGCCTGGCTCTTGGTCT 61.711 66.667 17.92 0.00 0.00 3.85
28 29 3.254024 TTCCGCCTGGCTCTTGGTC 62.254 63.158 17.92 0.00 34.14 4.02
29 30 3.249189 TTCCGCCTGGCTCTTGGT 61.249 61.111 17.92 0.00 34.14 3.67
30 31 1.899437 TAGTTCCGCCTGGCTCTTGG 61.899 60.000 17.92 10.58 34.14 3.61
31 32 0.741221 GTAGTTCCGCCTGGCTCTTG 60.741 60.000 17.92 0.17 34.14 3.02
32 33 1.192146 TGTAGTTCCGCCTGGCTCTT 61.192 55.000 17.92 0.37 34.14 2.85
33 34 1.192146 TTGTAGTTCCGCCTGGCTCT 61.192 55.000 17.92 11.62 34.14 4.09
34 35 1.019805 GTTGTAGTTCCGCCTGGCTC 61.020 60.000 17.92 4.64 34.14 4.70
35 36 1.003718 GTTGTAGTTCCGCCTGGCT 60.004 57.895 17.92 0.00 34.14 4.75
36 37 2.388232 CGTTGTAGTTCCGCCTGGC 61.388 63.158 9.11 9.11 34.14 4.85
37 38 1.740296 CCGTTGTAGTTCCGCCTGG 60.740 63.158 0.00 0.00 0.00 4.45
38 39 1.005394 ACCGTTGTAGTTCCGCCTG 60.005 57.895 0.00 0.00 0.00 4.85
39 40 1.291272 GACCGTTGTAGTTCCGCCT 59.709 57.895 0.00 0.00 0.00 5.52
40 41 1.005867 TGACCGTTGTAGTTCCGCC 60.006 57.895 0.00 0.00 0.00 6.13
41 42 0.038892 TCTGACCGTTGTAGTTCCGC 60.039 55.000 0.00 0.00 0.00 5.54
42 43 1.694639 GTCTGACCGTTGTAGTTCCG 58.305 55.000 0.00 0.00 0.00 4.30
43 44 1.000938 ACGTCTGACCGTTGTAGTTCC 60.001 52.381 1.55 0.00 37.96 3.62
44 45 2.412421 ACGTCTGACCGTTGTAGTTC 57.588 50.000 1.55 0.00 37.96 3.01
52 53 0.311165 CAGAGTGAACGTCTGACCGT 59.689 55.000 1.55 0.99 43.65 4.83
53 54 0.311165 ACAGAGTGAACGTCTGACCG 59.689 55.000 8.08 0.35 43.65 4.79
54 55 2.553172 ACTACAGAGTGAACGTCTGACC 59.447 50.000 8.08 0.00 43.65 4.02
55 56 3.499157 AGACTACAGAGTGAACGTCTGAC 59.501 47.826 8.08 0.00 43.65 3.51
56 57 3.741249 AGACTACAGAGTGAACGTCTGA 58.259 45.455 8.08 0.00 43.65 3.27
57 58 4.491234 AAGACTACAGAGTGAACGTCTG 57.509 45.455 0.00 0.00 45.94 3.51
58 59 6.821031 ATAAAGACTACAGAGTGAACGTCT 57.179 37.500 0.00 0.00 35.45 4.18
59 60 7.188157 CCTATAAAGACTACAGAGTGAACGTC 58.812 42.308 0.00 0.00 35.45 4.34
60 61 6.404513 GCCTATAAAGACTACAGAGTGAACGT 60.405 42.308 0.00 0.00 35.45 3.99
61 62 5.972382 GCCTATAAAGACTACAGAGTGAACG 59.028 44.000 0.00 0.00 35.45 3.95
62 63 6.864342 TGCCTATAAAGACTACAGAGTGAAC 58.136 40.000 0.00 0.00 35.45 3.18
63 64 7.661536 ATGCCTATAAAGACTACAGAGTGAA 57.338 36.000 0.00 0.00 35.45 3.18
64 65 7.661536 AATGCCTATAAAGACTACAGAGTGA 57.338 36.000 0.00 0.00 35.45 3.41
65 66 9.988815 ATTAATGCCTATAAAGACTACAGAGTG 57.011 33.333 0.00 0.00 35.45 3.51
80 81 8.850156 CCAGCTTTAAGTACAATTAATGCCTAT 58.150 33.333 15.82 2.96 42.42 2.57
81 82 7.201785 GCCAGCTTTAAGTACAATTAATGCCTA 60.202 37.037 15.82 0.00 42.42 3.93
82 83 6.405842 GCCAGCTTTAAGTACAATTAATGCCT 60.406 38.462 15.82 6.69 42.42 4.75
83 84 5.748630 GCCAGCTTTAAGTACAATTAATGCC 59.251 40.000 15.82 4.50 42.42 4.40
84 85 5.455525 CGCCAGCTTTAAGTACAATTAATGC 59.544 40.000 13.36 13.36 42.07 3.56
85 86 6.551736 ACGCCAGCTTTAAGTACAATTAATG 58.448 36.000 0.00 0.00 0.00 1.90
86 87 6.753107 ACGCCAGCTTTAAGTACAATTAAT 57.247 33.333 0.00 0.00 0.00 1.40
87 88 6.563222 AACGCCAGCTTTAAGTACAATTAA 57.437 33.333 0.00 0.00 0.00 1.40
88 89 7.549842 TGATAACGCCAGCTTTAAGTACAATTA 59.450 33.333 0.00 0.00 0.00 1.40
89 90 6.373216 TGATAACGCCAGCTTTAAGTACAATT 59.627 34.615 0.00 0.00 0.00 2.32
90 91 5.878116 TGATAACGCCAGCTTTAAGTACAAT 59.122 36.000 0.00 0.00 0.00 2.71
91 92 5.239351 TGATAACGCCAGCTTTAAGTACAA 58.761 37.500 0.00 0.00 0.00 2.41
92 93 4.823157 TGATAACGCCAGCTTTAAGTACA 58.177 39.130 0.00 0.00 0.00 2.90
93 94 4.868734 ACTGATAACGCCAGCTTTAAGTAC 59.131 41.667 0.00 0.00 35.14 2.73
94 95 5.080969 ACTGATAACGCCAGCTTTAAGTA 57.919 39.130 0.00 0.00 35.14 2.24
95 96 3.939066 ACTGATAACGCCAGCTTTAAGT 58.061 40.909 0.00 0.00 35.14 2.24
96 97 5.796813 GTTACTGATAACGCCAGCTTTAAG 58.203 41.667 0.00 0.00 35.14 1.85
97 98 5.789710 GTTACTGATAACGCCAGCTTTAA 57.210 39.130 0.00 0.00 35.14 1.52
108 109 4.732672 AAGGAGGGACGTTACTGATAAC 57.267 45.455 0.00 0.00 37.85 1.89
109 110 6.608405 TCATTAAGGAGGGACGTTACTGATAA 59.392 38.462 0.00 0.00 35.35 1.75
110 111 6.131264 TCATTAAGGAGGGACGTTACTGATA 58.869 40.000 0.00 0.00 35.35 2.15
111 112 4.960469 TCATTAAGGAGGGACGTTACTGAT 59.040 41.667 0.00 0.00 35.35 2.90
112 113 4.346730 TCATTAAGGAGGGACGTTACTGA 58.653 43.478 0.00 0.00 36.73 3.41
113 114 4.730949 TCATTAAGGAGGGACGTTACTG 57.269 45.455 0.00 0.00 33.73 2.74
114 115 4.529377 TGTTCATTAAGGAGGGACGTTACT 59.471 41.667 0.00 0.00 0.00 2.24
115 116 4.824289 TGTTCATTAAGGAGGGACGTTAC 58.176 43.478 0.00 0.00 0.00 2.50
116 117 5.687166 ATGTTCATTAAGGAGGGACGTTA 57.313 39.130 0.00 0.00 0.00 3.18
117 118 4.569719 ATGTTCATTAAGGAGGGACGTT 57.430 40.909 0.00 0.00 0.00 3.99
118 119 4.019681 TCAATGTTCATTAAGGAGGGACGT 60.020 41.667 0.00 0.00 0.00 4.34
119 120 4.513442 TCAATGTTCATTAAGGAGGGACG 58.487 43.478 0.00 0.00 0.00 4.79
120 121 5.125578 GGTTCAATGTTCATTAAGGAGGGAC 59.874 44.000 0.00 0.00 0.00 4.46
121 122 5.261216 GGTTCAATGTTCATTAAGGAGGGA 58.739 41.667 0.00 0.00 0.00 4.20
122 123 4.402474 GGGTTCAATGTTCATTAAGGAGGG 59.598 45.833 0.00 0.00 0.00 4.30
123 124 5.264395 AGGGTTCAATGTTCATTAAGGAGG 58.736 41.667 0.00 0.00 0.00 4.30
124 125 6.094603 CAGAGGGTTCAATGTTCATTAAGGAG 59.905 42.308 0.00 0.00 0.00 3.69
125 126 5.945784 CAGAGGGTTCAATGTTCATTAAGGA 59.054 40.000 0.00 0.00 0.00 3.36
126 127 5.711976 ACAGAGGGTTCAATGTTCATTAAGG 59.288 40.000 0.00 0.00 0.00 2.69
127 128 6.824305 ACAGAGGGTTCAATGTTCATTAAG 57.176 37.500 0.00 0.00 0.00 1.85
128 129 7.094975 CGTTACAGAGGGTTCAATGTTCATTAA 60.095 37.037 0.00 0.00 0.00 1.40
129 130 6.370442 CGTTACAGAGGGTTCAATGTTCATTA 59.630 38.462 0.00 0.00 0.00 1.90
130 131 5.181245 CGTTACAGAGGGTTCAATGTTCATT 59.819 40.000 0.00 0.00 0.00 2.57
131 132 4.695455 CGTTACAGAGGGTTCAATGTTCAT 59.305 41.667 0.00 0.00 0.00 2.57
132 133 4.062293 CGTTACAGAGGGTTCAATGTTCA 58.938 43.478 0.00 0.00 0.00 3.18
133 134 3.435671 CCGTTACAGAGGGTTCAATGTTC 59.564 47.826 0.00 0.00 0.00 3.18
134 135 3.071892 TCCGTTACAGAGGGTTCAATGTT 59.928 43.478 0.00 0.00 34.82 2.71
135 136 2.635915 TCCGTTACAGAGGGTTCAATGT 59.364 45.455 0.00 0.00 34.82 2.71
136 137 3.262420 CTCCGTTACAGAGGGTTCAATG 58.738 50.000 0.00 0.00 34.82 2.82
137 138 2.236395 CCTCCGTTACAGAGGGTTCAAT 59.764 50.000 6.73 0.00 46.14 2.57
138 139 1.621814 CCTCCGTTACAGAGGGTTCAA 59.378 52.381 6.73 0.00 46.14 2.69
139 140 1.263356 CCTCCGTTACAGAGGGTTCA 58.737 55.000 6.73 0.00 46.14 3.18
145 146 0.684805 AGCTCCCCTCCGTTACAGAG 60.685 60.000 0.00 0.00 0.00 3.35
146 147 0.970937 CAGCTCCCCTCCGTTACAGA 60.971 60.000 0.00 0.00 0.00 3.41
147 148 1.517832 CAGCTCCCCTCCGTTACAG 59.482 63.158 0.00 0.00 0.00 2.74
148 149 1.987855 CCAGCTCCCCTCCGTTACA 60.988 63.158 0.00 0.00 0.00 2.41
149 150 2.732619 CCCAGCTCCCCTCCGTTAC 61.733 68.421 0.00 0.00 0.00 2.50
150 151 2.365105 CCCAGCTCCCCTCCGTTA 60.365 66.667 0.00 0.00 0.00 3.18
155 156 4.423209 AGGACCCCAGCTCCCCTC 62.423 72.222 0.00 0.00 0.00 4.30
156 157 4.748798 CAGGACCCCAGCTCCCCT 62.749 72.222 0.00 0.00 0.00 4.79
166 167 1.113517 TATAGAGTGCGCCAGGACCC 61.114 60.000 4.18 0.00 39.75 4.46
167 168 0.969894 ATATAGAGTGCGCCAGGACC 59.030 55.000 4.18 0.00 39.75 4.46
168 169 3.256136 ACTTATATAGAGTGCGCCAGGAC 59.744 47.826 4.18 0.00 39.15 3.85
169 170 3.497332 ACTTATATAGAGTGCGCCAGGA 58.503 45.455 4.18 0.00 0.00 3.86
170 171 3.255888 TGACTTATATAGAGTGCGCCAGG 59.744 47.826 4.18 0.00 0.00 4.45
171 172 4.230657 GTGACTTATATAGAGTGCGCCAG 58.769 47.826 4.18 0.00 0.00 4.85
172 173 3.005472 GGTGACTTATATAGAGTGCGCCA 59.995 47.826 4.18 0.00 31.27 5.69
173 174 3.576648 GGTGACTTATATAGAGTGCGCC 58.423 50.000 4.18 0.00 0.00 6.53
174 175 3.256136 AGGGTGACTTATATAGAGTGCGC 59.744 47.826 0.00 0.00 0.00 6.09
175 176 4.082679 GGAGGGTGACTTATATAGAGTGCG 60.083 50.000 3.30 0.00 0.00 5.34
176 177 5.081032 AGGAGGGTGACTTATATAGAGTGC 58.919 45.833 3.30 0.00 0.00 4.40
177 178 5.712917 GGAGGAGGGTGACTTATATAGAGTG 59.287 48.000 3.30 0.00 0.00 3.51
178 179 5.617851 AGGAGGAGGGTGACTTATATAGAGT 59.382 44.000 0.00 0.00 0.00 3.24
179 180 6.011981 AGAGGAGGAGGGTGACTTATATAGAG 60.012 46.154 0.00 0.00 0.00 2.43
180 181 5.858408 AGAGGAGGAGGGTGACTTATATAGA 59.142 44.000 0.00 0.00 0.00 1.98
181 182 5.949354 CAGAGGAGGAGGGTGACTTATATAG 59.051 48.000 0.00 0.00 0.00 1.31
182 183 5.222358 CCAGAGGAGGAGGGTGACTTATATA 60.222 48.000 0.00 0.00 0.00 0.86
183 184 4.449968 CCAGAGGAGGAGGGTGACTTATAT 60.450 50.000 0.00 0.00 0.00 0.86
184 185 3.117093 CCAGAGGAGGAGGGTGACTTATA 60.117 52.174 0.00 0.00 0.00 0.98
185 186 2.359781 CCAGAGGAGGAGGGTGACTTAT 60.360 54.545 0.00 0.00 0.00 1.73
186 187 1.007238 CCAGAGGAGGAGGGTGACTTA 59.993 57.143 0.00 0.00 0.00 2.24
187 188 0.252467 CCAGAGGAGGAGGGTGACTT 60.252 60.000 0.00 0.00 0.00 3.01
188 189 1.390125 CCAGAGGAGGAGGGTGACT 59.610 63.158 0.00 0.00 0.00 3.41
189 190 1.687493 CCCAGAGGAGGAGGGTGAC 60.687 68.421 0.00 0.00 37.81 3.67
190 191 1.862138 TCCCAGAGGAGGAGGGTGA 60.862 63.158 0.00 0.00 43.31 4.02
191 192 1.687493 GTCCCAGAGGAGGAGGGTG 60.687 68.421 0.00 0.00 45.21 4.61
192 193 1.751143 TTGTCCCAGAGGAGGAGGGT 61.751 60.000 0.00 0.00 45.21 4.34
193 194 0.980231 CTTGTCCCAGAGGAGGAGGG 60.980 65.000 0.00 0.00 45.21 4.30
194 195 0.980231 CCTTGTCCCAGAGGAGGAGG 60.980 65.000 0.00 0.00 45.21 4.30
195 196 0.980231 CCCTTGTCCCAGAGGAGGAG 60.980 65.000 0.00 0.00 45.21 3.69
196 197 1.081092 CCCTTGTCCCAGAGGAGGA 59.919 63.158 0.00 0.00 45.21 3.71
197 198 0.842467 AACCCTTGTCCCAGAGGAGG 60.842 60.000 0.00 0.00 45.21 4.30
198 199 0.615850 GAACCCTTGTCCCAGAGGAG 59.384 60.000 0.00 0.00 45.21 3.69
199 200 1.192146 CGAACCCTTGTCCCAGAGGA 61.192 60.000 0.00 0.00 41.08 3.71
200 201 1.296715 CGAACCCTTGTCCCAGAGG 59.703 63.158 0.00 0.00 0.00 3.69
201 202 1.376037 GCGAACCCTTGTCCCAGAG 60.376 63.158 0.00 0.00 0.00 3.35
202 203 2.144078 TGCGAACCCTTGTCCCAGA 61.144 57.895 0.00 0.00 0.00 3.86
203 204 1.966451 GTGCGAACCCTTGTCCCAG 60.966 63.158 0.00 0.00 0.00 4.45
204 205 2.112297 GTGCGAACCCTTGTCCCA 59.888 61.111 0.00 0.00 0.00 4.37
205 206 2.671963 GGTGCGAACCCTTGTCCC 60.672 66.667 0.00 0.00 0.00 4.46
206 207 2.671963 GGGTGCGAACCCTTGTCC 60.672 66.667 25.95 0.00 46.39 4.02
213 214 0.542805 TGTAATAGGGGGTGCGAACC 59.457 55.000 2.96 2.96 0.00 3.62
214 215 2.158871 TGATGTAATAGGGGGTGCGAAC 60.159 50.000 0.00 0.00 0.00 3.95
215 216 2.120312 TGATGTAATAGGGGGTGCGAA 58.880 47.619 0.00 0.00 0.00 4.70
216 217 1.414919 GTGATGTAATAGGGGGTGCGA 59.585 52.381 0.00 0.00 0.00 5.10
217 218 1.140052 TGTGATGTAATAGGGGGTGCG 59.860 52.381 0.00 0.00 0.00 5.34
218 219 2.092646 TGTGTGATGTAATAGGGGGTGC 60.093 50.000 0.00 0.00 0.00 5.01
219 220 3.054728 TGTGTGTGATGTAATAGGGGGTG 60.055 47.826 0.00 0.00 0.00 4.61
220 221 3.186283 TGTGTGTGATGTAATAGGGGGT 58.814 45.455 0.00 0.00 0.00 4.95
221 222 3.924114 TGTGTGTGATGTAATAGGGGG 57.076 47.619 0.00 0.00 0.00 5.40
222 223 9.383519 GATTATATGTGTGTGATGTAATAGGGG 57.616 37.037 0.00 0.00 0.00 4.79
223 224 9.383519 GGATTATATGTGTGTGATGTAATAGGG 57.616 37.037 0.00 0.00 0.00 3.53
224 225 9.942850 TGGATTATATGTGTGTGATGTAATAGG 57.057 33.333 0.00 0.00 0.00 2.57
227 228 9.494271 GACTGGATTATATGTGTGTGATGTAAT 57.506 33.333 0.00 0.00 0.00 1.89
228 229 7.651704 CGACTGGATTATATGTGTGTGATGTAA 59.348 37.037 0.00 0.00 0.00 2.41
229 230 7.013846 TCGACTGGATTATATGTGTGTGATGTA 59.986 37.037 0.00 0.00 0.00 2.29
230 231 5.985530 CGACTGGATTATATGTGTGTGATGT 59.014 40.000 0.00 0.00 0.00 3.06
231 232 6.144563 GTCGACTGGATTATATGTGTGTGATG 59.855 42.308 8.70 0.00 0.00 3.07
232 233 6.216569 GTCGACTGGATTATATGTGTGTGAT 58.783 40.000 8.70 0.00 0.00 3.06
233 234 5.451381 GGTCGACTGGATTATATGTGTGTGA 60.451 44.000 16.46 0.00 0.00 3.58
234 235 4.745125 GGTCGACTGGATTATATGTGTGTG 59.255 45.833 16.46 0.00 0.00 3.82
235 236 4.404394 TGGTCGACTGGATTATATGTGTGT 59.596 41.667 16.46 0.00 0.00 3.72
236 237 4.745125 GTGGTCGACTGGATTATATGTGTG 59.255 45.833 16.46 0.00 0.00 3.82
237 238 4.202223 GGTGGTCGACTGGATTATATGTGT 60.202 45.833 16.46 0.00 0.00 3.72
238 239 4.039245 AGGTGGTCGACTGGATTATATGTG 59.961 45.833 16.46 0.00 0.00 3.21
239 240 4.223953 AGGTGGTCGACTGGATTATATGT 58.776 43.478 16.46 0.00 0.00 2.29
240 241 4.322049 GGAGGTGGTCGACTGGATTATATG 60.322 50.000 16.46 0.00 0.00 1.78
241 242 3.833070 GGAGGTGGTCGACTGGATTATAT 59.167 47.826 16.46 0.00 0.00 0.86
242 243 3.228453 GGAGGTGGTCGACTGGATTATA 58.772 50.000 16.46 0.00 0.00 0.98
243 244 2.040178 GGAGGTGGTCGACTGGATTAT 58.960 52.381 16.46 0.00 0.00 1.28
244 245 1.481871 GGAGGTGGTCGACTGGATTA 58.518 55.000 16.46 0.00 0.00 1.75
245 246 1.605058 CGGAGGTGGTCGACTGGATT 61.605 60.000 16.46 0.00 0.00 3.01
246 247 2.052690 CGGAGGTGGTCGACTGGAT 61.053 63.158 16.46 0.00 0.00 3.41
247 248 2.675423 CGGAGGTGGTCGACTGGA 60.675 66.667 16.46 0.00 0.00 3.86
260 261 1.994507 CTACGTCTCAGTGCCCGGAG 61.995 65.000 0.73 0.00 34.59 4.63
261 262 2.034532 TACGTCTCAGTGCCCGGA 59.965 61.111 0.73 0.00 0.00 5.14
262 263 2.490217 CTACGTCTCAGTGCCCGG 59.510 66.667 0.00 0.00 0.00 5.73
263 264 2.490217 CCTACGTCTCAGTGCCCG 59.510 66.667 0.00 0.00 0.00 6.13
264 265 2.893398 CCCTACGTCTCAGTGCCC 59.107 66.667 0.00 0.00 0.00 5.36
265 266 1.035932 TAGCCCTACGTCTCAGTGCC 61.036 60.000 0.00 0.00 0.00 5.01
266 267 1.033574 ATAGCCCTACGTCTCAGTGC 58.966 55.000 0.00 0.00 0.00 4.40
267 268 3.884091 AGTAATAGCCCTACGTCTCAGTG 59.116 47.826 0.00 0.00 0.00 3.66
268 269 4.167652 AGTAATAGCCCTACGTCTCAGT 57.832 45.455 0.00 0.00 0.00 3.41
269 270 4.023021 GGAAGTAATAGCCCTACGTCTCAG 60.023 50.000 0.00 0.00 31.08 3.35
270 271 3.887716 GGAAGTAATAGCCCTACGTCTCA 59.112 47.826 0.00 0.00 31.08 3.27
271 272 4.143543 AGGAAGTAATAGCCCTACGTCTC 58.856 47.826 0.00 0.00 31.08 3.36
272 273 4.141205 AGAGGAAGTAATAGCCCTACGTCT 60.141 45.833 0.00 0.00 31.08 4.18
273 274 4.023021 CAGAGGAAGTAATAGCCCTACGTC 60.023 50.000 0.00 0.00 0.00 4.34
274 275 3.890147 CAGAGGAAGTAATAGCCCTACGT 59.110 47.826 0.00 0.00 0.00 3.57
275 276 4.142790 TCAGAGGAAGTAATAGCCCTACG 58.857 47.826 0.00 0.00 0.00 3.51
276 277 5.386924 TCTCAGAGGAAGTAATAGCCCTAC 58.613 45.833 0.00 0.00 0.00 3.18
277 278 5.664815 TCTCAGAGGAAGTAATAGCCCTA 57.335 43.478 0.00 0.00 0.00 3.53
278 279 4.544564 TCTCAGAGGAAGTAATAGCCCT 57.455 45.455 0.00 0.00 0.00 5.19
279 280 4.039852 CCTTCTCAGAGGAAGTAATAGCCC 59.960 50.000 0.00 0.00 40.56 5.19
280 281 4.039852 CCCTTCTCAGAGGAAGTAATAGCC 59.960 50.000 0.00 0.00 40.56 3.93
281 282 4.651962 ACCCTTCTCAGAGGAAGTAATAGC 59.348 45.833 0.00 0.00 40.56 2.97
282 283 6.133356 AGACCCTTCTCAGAGGAAGTAATAG 58.867 44.000 0.00 0.00 40.56 1.73
283 284 6.093617 AGACCCTTCTCAGAGGAAGTAATA 57.906 41.667 0.00 0.00 40.56 0.98
284 285 4.954089 AGACCCTTCTCAGAGGAAGTAAT 58.046 43.478 0.00 0.00 40.56 1.89
285 286 4.405756 AGACCCTTCTCAGAGGAAGTAA 57.594 45.455 0.00 0.00 40.56 2.24
286 287 5.531753 TTAGACCCTTCTCAGAGGAAGTA 57.468 43.478 0.00 0.00 40.56 2.24
287 288 4.405756 TTAGACCCTTCTCAGAGGAAGT 57.594 45.455 0.00 0.00 40.56 3.01
288 289 4.775253 AGTTTAGACCCTTCTCAGAGGAAG 59.225 45.833 0.00 0.60 39.25 3.46
289 290 4.753186 AGTTTAGACCCTTCTCAGAGGAA 58.247 43.478 0.00 0.00 39.25 3.36
290 291 4.202684 TGAGTTTAGACCCTTCTCAGAGGA 60.203 45.833 0.00 0.00 39.25 3.71
291 292 4.090090 TGAGTTTAGACCCTTCTCAGAGG 58.910 47.826 0.00 0.00 36.52 3.69
292 293 5.930837 ATGAGTTTAGACCCTTCTCAGAG 57.069 43.478 0.00 0.00 38.30 3.35
293 294 7.792364 TTTATGAGTTTAGACCCTTCTCAGA 57.208 36.000 0.00 0.00 38.30 3.27
294 295 8.482128 AGATTTATGAGTTTAGACCCTTCTCAG 58.518 37.037 0.00 0.00 38.30 3.35
295 296 8.380742 AGATTTATGAGTTTAGACCCTTCTCA 57.619 34.615 0.00 0.00 39.05 3.27
296 297 7.650104 CGAGATTTATGAGTTTAGACCCTTCTC 59.350 40.741 0.00 0.00 32.75 2.87
297 298 7.493367 CGAGATTTATGAGTTTAGACCCTTCT 58.507 38.462 0.00 0.00 35.66 2.85
298 299 6.201234 GCGAGATTTATGAGTTTAGACCCTTC 59.799 42.308 0.00 0.00 0.00 3.46
299 300 6.049790 GCGAGATTTATGAGTTTAGACCCTT 58.950 40.000 0.00 0.00 0.00 3.95
300 301 5.602628 GCGAGATTTATGAGTTTAGACCCT 58.397 41.667 0.00 0.00 0.00 4.34
301 302 4.444720 CGCGAGATTTATGAGTTTAGACCC 59.555 45.833 0.00 0.00 0.00 4.46
302 303 4.085004 GCGCGAGATTTATGAGTTTAGACC 60.085 45.833 12.10 0.00 0.00 3.85
303 304 4.374112 CGCGCGAGATTTATGAGTTTAGAC 60.374 45.833 28.94 0.00 0.00 2.59
304 305 3.729217 CGCGCGAGATTTATGAGTTTAGA 59.271 43.478 28.94 0.00 0.00 2.10
305 306 3.486108 ACGCGCGAGATTTATGAGTTTAG 59.514 43.478 39.36 0.00 0.00 1.85
306 307 3.441163 ACGCGCGAGATTTATGAGTTTA 58.559 40.909 39.36 0.00 0.00 2.01
307 308 2.268298 ACGCGCGAGATTTATGAGTTT 58.732 42.857 39.36 5.15 0.00 2.66
308 309 1.922570 ACGCGCGAGATTTATGAGTT 58.077 45.000 39.36 5.70 0.00 3.01
309 310 2.223409 TGTACGCGCGAGATTTATGAGT 60.223 45.455 39.36 12.01 0.00 3.41
310 311 2.381589 TGTACGCGCGAGATTTATGAG 58.618 47.619 39.36 2.23 0.00 2.90
311 312 2.478547 TGTACGCGCGAGATTTATGA 57.521 45.000 39.36 5.89 0.00 2.15
312 313 2.980476 AGATGTACGCGCGAGATTTATG 59.020 45.455 39.36 3.76 0.00 1.90
313 314 3.284323 AGATGTACGCGCGAGATTTAT 57.716 42.857 39.36 20.00 0.00 1.40
314 315 2.768833 AGATGTACGCGCGAGATTTA 57.231 45.000 39.36 15.66 0.00 1.40
315 316 1.852895 GAAGATGTACGCGCGAGATTT 59.147 47.619 39.36 21.07 0.00 2.17
316 317 1.202256 TGAAGATGTACGCGCGAGATT 60.202 47.619 39.36 20.46 0.00 2.40
317 318 0.380733 TGAAGATGTACGCGCGAGAT 59.619 50.000 39.36 22.91 0.00 2.75
318 319 0.522705 GTGAAGATGTACGCGCGAGA 60.523 55.000 39.36 21.39 0.00 4.04
319 320 1.472276 GGTGAAGATGTACGCGCGAG 61.472 60.000 39.36 10.29 0.00 5.03
320 321 1.515519 GGTGAAGATGTACGCGCGA 60.516 57.895 39.36 15.84 0.00 5.87
321 322 1.145759 ATGGTGAAGATGTACGCGCG 61.146 55.000 30.96 30.96 0.00 6.86
322 323 1.787155 CTATGGTGAAGATGTACGCGC 59.213 52.381 5.73 0.00 0.00 6.86
323 324 1.787155 GCTATGGTGAAGATGTACGCG 59.213 52.381 3.53 3.53 0.00 6.01
324 325 2.797156 CAGCTATGGTGAAGATGTACGC 59.203 50.000 0.00 0.00 32.22 4.42
325 326 4.036852 TCTCAGCTATGGTGAAGATGTACG 59.963 45.833 1.22 0.00 39.59 3.67
326 327 5.521906 TCTCAGCTATGGTGAAGATGTAC 57.478 43.478 1.22 0.00 39.59 2.90
327 328 6.073981 AGATCTCAGCTATGGTGAAGATGTA 58.926 40.000 12.58 0.00 39.59 2.29
328 329 4.900652 AGATCTCAGCTATGGTGAAGATGT 59.099 41.667 12.58 8.50 39.59 3.06
329 330 5.471556 AGATCTCAGCTATGGTGAAGATG 57.528 43.478 12.58 0.00 39.59 2.90
330 331 5.742546 GCAAGATCTCAGCTATGGTGAAGAT 60.743 44.000 11.67 6.28 39.59 2.40
331 332 4.442612 GCAAGATCTCAGCTATGGTGAAGA 60.443 45.833 11.67 2.31 39.59 2.87
332 333 3.808726 GCAAGATCTCAGCTATGGTGAAG 59.191 47.826 11.67 0.00 39.59 3.02
333 334 3.432749 GGCAAGATCTCAGCTATGGTGAA 60.433 47.826 16.75 0.00 39.59 3.18
334 335 2.103771 GGCAAGATCTCAGCTATGGTGA 59.896 50.000 16.75 0.00 37.74 4.02
335 336 2.104451 AGGCAAGATCTCAGCTATGGTG 59.896 50.000 16.75 1.25 0.00 4.17
336 337 2.368221 GAGGCAAGATCTCAGCTATGGT 59.632 50.000 16.75 1.48 0.00 3.55
337 338 2.633967 AGAGGCAAGATCTCAGCTATGG 59.366 50.000 16.75 0.00 33.92 2.74
338 339 3.306225 GGAGAGGCAAGATCTCAGCTATG 60.306 52.174 16.75 3.23 44.16 2.23
339 340 2.899256 GGAGAGGCAAGATCTCAGCTAT 59.101 50.000 16.75 8.44 44.16 2.97
340 341 2.315176 GGAGAGGCAAGATCTCAGCTA 58.685 52.381 16.75 0.00 44.16 3.32
341 342 1.122227 GGAGAGGCAAGATCTCAGCT 58.878 55.000 16.75 6.10 44.16 4.24
342 343 0.829333 TGGAGAGGCAAGATCTCAGC 59.171 55.000 10.74 10.74 44.16 4.26
343 344 3.896888 AGTATGGAGAGGCAAGATCTCAG 59.103 47.826 0.00 0.00 44.16 3.35
344 345 3.921104 AGTATGGAGAGGCAAGATCTCA 58.079 45.455 0.00 0.00 44.16 3.27
345 346 4.953940 AAGTATGGAGAGGCAAGATCTC 57.046 45.455 0.00 0.00 42.08 2.75
346 347 4.591072 GGTAAGTATGGAGAGGCAAGATCT 59.409 45.833 0.00 0.00 0.00 2.75
347 348 4.262678 GGGTAAGTATGGAGAGGCAAGATC 60.263 50.000 0.00 0.00 0.00 2.75
348 349 3.648545 GGGTAAGTATGGAGAGGCAAGAT 59.351 47.826 0.00 0.00 0.00 2.40
349 350 3.039011 GGGTAAGTATGGAGAGGCAAGA 58.961 50.000 0.00 0.00 0.00 3.02
350 351 2.104963 GGGGTAAGTATGGAGAGGCAAG 59.895 54.545 0.00 0.00 0.00 4.01
351 352 2.124411 GGGGTAAGTATGGAGAGGCAA 58.876 52.381 0.00 0.00 0.00 4.52
352 353 1.694693 GGGGGTAAGTATGGAGAGGCA 60.695 57.143 0.00 0.00 0.00 4.75
353 354 1.057471 GGGGGTAAGTATGGAGAGGC 58.943 60.000 0.00 0.00 0.00 4.70
354 355 2.797285 AGGGGGTAAGTATGGAGAGG 57.203 55.000 0.00 0.00 0.00 3.69
355 356 3.780850 ACAAAGGGGGTAAGTATGGAGAG 59.219 47.826 0.00 0.00 0.00 3.20
356 357 3.810623 ACAAAGGGGGTAAGTATGGAGA 58.189 45.455 0.00 0.00 0.00 3.71
357 358 4.720273 AGTACAAAGGGGGTAAGTATGGAG 59.280 45.833 0.00 0.00 0.00 3.86
358 359 4.472108 CAGTACAAAGGGGGTAAGTATGGA 59.528 45.833 0.00 0.00 0.00 3.41
359 360 4.226620 ACAGTACAAAGGGGGTAAGTATGG 59.773 45.833 0.00 0.00 0.00 2.74
360 361 5.046159 TGACAGTACAAAGGGGGTAAGTATG 60.046 44.000 0.00 0.00 0.00 2.39
361 362 5.095809 TGACAGTACAAAGGGGGTAAGTAT 58.904 41.667 0.00 0.00 0.00 2.12
362 363 4.491675 TGACAGTACAAAGGGGGTAAGTA 58.508 43.478 0.00 0.00 0.00 2.24
363 364 3.320129 TGACAGTACAAAGGGGGTAAGT 58.680 45.455 0.00 0.00 0.00 2.24
364 365 3.326880 ACTGACAGTACAAAGGGGGTAAG 59.673 47.826 6.24 0.00 0.00 2.34
365 366 3.320129 ACTGACAGTACAAAGGGGGTAA 58.680 45.455 6.24 0.00 0.00 2.85
366 367 2.901839 GACTGACAGTACAAAGGGGGTA 59.098 50.000 8.41 0.00 0.00 3.69
367 368 1.697982 GACTGACAGTACAAAGGGGGT 59.302 52.381 8.41 0.00 0.00 4.95
368 369 1.978580 AGACTGACAGTACAAAGGGGG 59.021 52.381 8.41 0.00 0.00 5.40
369 370 3.771577 AAGACTGACAGTACAAAGGGG 57.228 47.619 8.41 0.00 0.00 4.79
370 371 5.723672 TCTAAGACTGACAGTACAAAGGG 57.276 43.478 8.41 0.00 0.00 3.95
371 372 5.927115 GGTTCTAAGACTGACAGTACAAAGG 59.073 44.000 8.41 0.00 0.00 3.11
372 373 6.421202 GTGGTTCTAAGACTGACAGTACAAAG 59.579 42.308 8.41 4.42 0.00 2.77
373 374 6.278363 GTGGTTCTAAGACTGACAGTACAAA 58.722 40.000 8.41 0.00 0.00 2.83
374 375 5.506815 CGTGGTTCTAAGACTGACAGTACAA 60.507 44.000 8.41 0.00 0.00 2.41
375 376 4.023450 CGTGGTTCTAAGACTGACAGTACA 60.023 45.833 8.41 0.00 0.00 2.90
376 377 4.214971 TCGTGGTTCTAAGACTGACAGTAC 59.785 45.833 8.41 1.57 0.00 2.73
377 378 4.214971 GTCGTGGTTCTAAGACTGACAGTA 59.785 45.833 8.41 0.00 0.00 2.74
378 379 3.004524 GTCGTGGTTCTAAGACTGACAGT 59.995 47.826 8.12 8.12 0.00 3.55
379 380 3.004419 TGTCGTGGTTCTAAGACTGACAG 59.996 47.826 0.00 0.00 34.92 3.51
380 381 2.953648 TGTCGTGGTTCTAAGACTGACA 59.046 45.455 4.39 0.00 34.92 3.58
381 382 3.637998 TGTCGTGGTTCTAAGACTGAC 57.362 47.619 4.39 0.00 34.92 3.51
382 383 3.552273 GCTTGTCGTGGTTCTAAGACTGA 60.552 47.826 4.39 0.00 34.92 3.41
383 384 2.731976 GCTTGTCGTGGTTCTAAGACTG 59.268 50.000 4.39 0.19 34.92 3.51
384 385 2.607282 CGCTTGTCGTGGTTCTAAGACT 60.607 50.000 4.39 0.00 34.92 3.24
385 386 1.719780 CGCTTGTCGTGGTTCTAAGAC 59.280 52.381 0.00 0.00 0.00 3.01
386 387 2.060326 CGCTTGTCGTGGTTCTAAGA 57.940 50.000 0.00 0.00 0.00 2.10
398 399 3.119096 GGAAGGGCGACGCTTGTC 61.119 66.667 20.77 13.37 36.78 3.18
401 402 4.736896 GACGGAAGGGCGACGCTT 62.737 66.667 20.77 6.94 39.31 4.68
404 405 4.796231 CTGGACGGAAGGGCGACG 62.796 72.222 0.00 0.00 0.00 5.12
405 406 3.644399 GACTGGACGGAAGGGCGAC 62.644 68.421 0.00 0.00 0.00 5.19
406 407 3.379445 GACTGGACGGAAGGGCGA 61.379 66.667 0.00 0.00 0.00 5.54
413 414 3.507597 CGTGATTTGACTGGACGGA 57.492 52.632 0.00 0.00 0.00 4.69
527 528 1.984026 CTGGCCCATCACAAACCCC 60.984 63.158 0.00 0.00 0.00 4.95
551 552 1.381928 GCTGACATGCCCACATCAGG 61.382 60.000 9.91 0.00 32.87 3.86
558 559 4.783621 GGCTCGCTGACATGCCCA 62.784 66.667 0.00 0.00 39.49 5.36
613 614 8.557029 GTCTTGGTCAGGTTATATTATTTTCGG 58.443 37.037 0.00 0.00 0.00 4.30
620 621 7.149973 GCATACGTCTTGGTCAGGTTATATTA 58.850 38.462 0.00 0.00 0.00 0.98
623 624 4.403113 TGCATACGTCTTGGTCAGGTTATA 59.597 41.667 0.00 0.00 0.00 0.98
624 625 3.196901 TGCATACGTCTTGGTCAGGTTAT 59.803 43.478 0.00 0.00 0.00 1.89
626 627 1.346395 TGCATACGTCTTGGTCAGGTT 59.654 47.619 0.00 0.00 0.00 3.50
630 632 1.803334 GGTTGCATACGTCTTGGTCA 58.197 50.000 0.00 0.00 0.00 4.02
636 638 0.390735 GGAACCGGTTGCATACGTCT 60.391 55.000 31.30 0.00 0.00 4.18
662 664 0.304705 GTATGGGCATCTTCAACGCG 59.695 55.000 3.53 3.53 0.00 6.01
669 672 2.224378 CGGACATCAGTATGGGCATCTT 60.224 50.000 0.00 0.00 37.43 2.40
678 681 4.815040 CGACTAGTTCGGACATCAGTAT 57.185 45.455 0.00 0.00 44.60 2.12
741 791 0.101219 TCGTCATGCTCTGTCGATGG 59.899 55.000 0.00 0.00 39.83 3.51
864 914 4.500116 GAGAGACGTGGGAGGCGC 62.500 72.222 0.00 0.00 0.00 6.53
1144 1199 2.815945 CCGGATCCATCAGCAGGCT 61.816 63.158 13.41 0.00 0.00 4.58
1404 1459 3.321648 ACCTGCGAGACATGGGCA 61.322 61.111 0.00 0.07 35.07 5.36
1440 1495 3.581755 TCGAAAATCGAAATCCGTGACT 58.418 40.909 0.00 0.00 46.90 3.41
1575 1640 3.040147 TCGATGGAACTTTCTTCGCTT 57.960 42.857 1.28 0.00 34.86 4.68
1576 1641 2.743636 TCGATGGAACTTTCTTCGCT 57.256 45.000 1.28 0.00 34.86 4.93
1686 1753 1.448013 GCTGTAGCCCGGACAGAAC 60.448 63.158 22.34 5.10 46.01 3.01
1712 1789 2.463752 CCAGTGGGGTAGCAGTACTAA 58.536 52.381 0.00 0.00 30.90 2.24
1724 1804 1.118838 TCAAAGCAAAACCAGTGGGG 58.881 50.000 15.21 0.91 44.81 4.96
1725 1805 3.132925 CAATCAAAGCAAAACCAGTGGG 58.867 45.455 15.21 0.00 41.29 4.61
1726 1806 3.556775 CACAATCAAAGCAAAACCAGTGG 59.443 43.478 7.91 7.91 0.00 4.00
1727 1807 3.001533 GCACAATCAAAGCAAAACCAGTG 59.998 43.478 0.00 0.00 0.00 3.66
1744 1835 3.699779 TTTTTAGCACATGACGCACAA 57.300 38.095 13.07 5.19 0.00 3.33
1823 1915 8.485392 TGACTTGATCACATGATTCCTACAATA 58.515 33.333 0.00 0.00 34.37 1.90
1909 2001 6.813152 CCAAATGATCCACCAATTGTAGAAAC 59.187 38.462 4.43 0.00 0.00 2.78
1914 2006 4.092279 TGCCAAATGATCCACCAATTGTA 58.908 39.130 4.43 0.00 0.00 2.41
2148 2248 7.904977 CAGTAGATTCAATGTAATGAACCAACG 59.095 37.037 0.00 0.00 41.78 4.10
2168 2268 8.902540 AATTTGATTCACACAAGTACAGTAGA 57.097 30.769 0.00 0.00 0.00 2.59
2203 2303 8.506437 CACAACAGACTCAAAATTCTTATAGCA 58.494 33.333 0.00 0.00 0.00 3.49
2223 2323 4.754618 ACAGATAACGATTGAAGCACAACA 59.245 37.500 0.00 0.00 41.52 3.33
2238 2338 6.263168 CACCATTTGAGGGGATAACAGATAAC 59.737 42.308 0.00 0.00 32.15 1.89
2250 2352 2.232208 GCTTTCTTCACCATTTGAGGGG 59.768 50.000 0.00 0.00 34.94 4.79
2281 2383 6.800072 TTAATTTTGTGAACCCCAAAGTCT 57.200 33.333 0.00 0.00 33.67 3.24
2283 2385 7.373617 AGATTAATTTTGTGAACCCCAAAGT 57.626 32.000 0.00 0.00 33.67 2.66
2308 2410 7.009179 ACATCCAACAGAGAGTTCTTCATTA 57.991 36.000 0.00 0.00 38.74 1.90
2354 2456 9.233232 GCCAAAATGTCTTATATTTAGAAACGG 57.767 33.333 0.00 0.00 0.00 4.44
2419 2521 7.844779 TCTTATCCAACTTTATACTCCCTCTGT 59.155 37.037 0.00 0.00 0.00 3.41
2449 2551 3.026630 CTGGAGCAAACTTCAGTCGTA 57.973 47.619 0.00 0.00 43.67 3.43
2573 2732 5.357032 AGCCCATTCGGTCAATTAACTTAAG 59.643 40.000 0.00 0.00 0.00 1.85
2574 2733 5.258051 AGCCCATTCGGTCAATTAACTTAA 58.742 37.500 0.00 0.00 0.00 1.85
2687 2856 7.466746 AGCACAACTATCCAACATTACAATT 57.533 32.000 0.00 0.00 0.00 2.32
2840 3009 5.378230 TGCCAAACTGGAGATGATATCTT 57.622 39.130 3.98 0.00 40.96 2.40
2844 3013 4.508551 ACATGCCAAACTGGAGATGATA 57.491 40.909 10.50 0.00 40.96 2.15
3213 3382 6.656693 CCTTCTGAATGATAAACTCAACCACT 59.343 38.462 0.00 0.00 37.44 4.00
3244 3417 9.309516 GATCATTTCATGTAATTTGTTGCATCT 57.690 29.630 0.00 0.00 0.00 2.90
3351 3529 7.748683 GTCTGTCGTTCTATTAGATGCATAGAG 59.251 40.741 0.00 0.00 35.20 2.43
3370 3548 7.807433 TGAATTGTTGGAATAAATTGTCTGTCG 59.193 33.333 0.00 0.00 0.00 4.35
3505 3683 4.676109 ACCACCATTCAATCAATCCAAGA 58.324 39.130 0.00 0.00 0.00 3.02
3625 3820 8.159447 ACACCATGACAACTAGATGCATATAAT 58.841 33.333 0.00 0.00 0.00 1.28
3697 3892 4.035675 GGATTTTAAGGAGCTGACGGATTG 59.964 45.833 0.00 0.00 0.00 2.67
3732 3952 1.877443 GGACGGAGCTGCAGTTAAAAA 59.123 47.619 16.64 0.00 0.00 1.94
3787 4007 2.235402 CTCTAACTTTAGGGCCCGTTCA 59.765 50.000 18.44 0.00 0.00 3.18
3907 4127 6.889198 TCCTAGTACCAAGATTTCAATGGAG 58.111 40.000 8.79 0.00 37.66 3.86
3910 4130 9.703892 CTATCTCCTAGTACCAAGATTTCAATG 57.296 37.037 0.00 0.00 31.25 2.82
4011 4238 3.116746 ACATTTTCCCCCAAGTTCTCCTT 60.117 43.478 0.00 0.00 0.00 3.36
4164 4462 8.587608 TCTGGTTCATTTGATCTAAAAGCAAAT 58.412 29.630 7.34 0.00 41.44 2.32
4202 4500 8.567104 CATTGGCATTGCTATGTAAATACAGTA 58.433 33.333 8.82 0.00 39.92 2.74
4262 4560 4.152223 TGAATGACAAGTGTTAGCATGTCG 59.848 41.667 8.27 0.00 43.91 4.35
4364 4662 9.157259 GCAACACAAAATGCTTTATAAAAACAG 57.843 29.630 0.00 0.00 39.46 3.16
4633 4934 4.142182 ACTGTCAATTGACCAACCAAAGTG 60.142 41.667 30.66 12.79 44.15 3.16
4646 4947 8.489990 AATAGATCTGTTCTGACTGTCAATTG 57.510 34.615 12.16 0.00 35.79 2.32
4717 5019 3.763897 GGCACAGGTAATTCCATCAAACT 59.236 43.478 0.00 0.00 39.02 2.66
4751 5053 4.865365 ACGCCAAAATTTTCAACTTCGAAA 59.135 33.333 0.00 0.00 33.12 3.46
4842 5144 5.624281 AAAGAACACTTTGACACATTGGTGG 60.624 40.000 0.00 0.00 39.40 4.61
4855 5157 6.808212 CACATGACAAGAACAAAGAACACTTT 59.192 34.615 0.00 0.00 34.67 2.66
4990 5293 5.763204 GGAAAGAGACAAATCCAGTGTACAA 59.237 40.000 0.00 0.00 32.08 2.41
5003 5306 4.536765 AGGAAAGCTTTGGAAAGAGACAA 58.463 39.130 18.30 0.00 38.28 3.18
5065 5370 3.046390 TGCAACTTAAACATTTTCGCCG 58.954 40.909 0.00 0.00 0.00 6.46
5200 5505 7.148205 TGGAGACAACCAAAACTAAACACTAAC 60.148 37.037 0.00 0.00 36.96 2.34
5201 5506 6.885376 TGGAGACAACCAAAACTAAACACTAA 59.115 34.615 0.00 0.00 36.96 2.24
5233 5620 6.509418 AAGTTTAACTTGTGAGAGCAAACA 57.491 33.333 9.77 0.00 37.00 2.83
5251 5638 1.200716 CGTCAGCCATCATGCAAGTTT 59.799 47.619 0.00 0.00 0.00 2.66
5309 5700 2.593026 ACCACAATTCGGTCACCAAAT 58.407 42.857 0.00 0.00 27.30 2.32
5361 5752 6.827727 AGCTAATTATCTGTTACATCGGGTT 58.172 36.000 0.00 0.00 0.00 4.11
5365 5756 6.088217 CGTGGAGCTAATTATCTGTTACATCG 59.912 42.308 0.00 0.00 0.00 3.84
5406 5801 4.637534 ACTTATACTGTACATGGTCGTCGT 59.362 41.667 0.00 0.00 0.00 4.34
5408 5803 9.823098 CTAATACTTATACTGTACATGGTCGTC 57.177 37.037 0.00 0.00 0.00 4.20
5409 5804 9.347240 ACTAATACTTATACTGTACATGGTCGT 57.653 33.333 0.00 0.00 0.00 4.34
5444 5839 7.728148 TCACCTGTAACTTGTACAAATAGTCA 58.272 34.615 10.03 5.15 0.00 3.41
5445 5840 8.656849 CATCACCTGTAACTTGTACAAATAGTC 58.343 37.037 10.03 0.86 0.00 2.59
5446 5841 8.372459 TCATCACCTGTAACTTGTACAAATAGT 58.628 33.333 10.03 0.96 0.00 2.12
5447 5842 8.771920 TCATCACCTGTAACTTGTACAAATAG 57.228 34.615 10.03 2.89 0.00 1.73
5541 5941 9.110502 GTTTATCGGGTTCTCTGATCTTTATTT 57.889 33.333 0.00 0.00 41.46 1.40
5542 5942 7.715686 GGTTTATCGGGTTCTCTGATCTTTATT 59.284 37.037 0.00 0.00 41.46 1.40
5586 5993 4.418013 GCACTTGCACATATACACACAA 57.582 40.909 0.00 0.00 41.59 3.33
5617 6026 4.464112 CGTTTTTGTTGACTAGCCTTAGC 58.536 43.478 0.00 0.00 40.32 3.09
5648 6057 4.135153 CTCGGTGAGGTCAGGGCG 62.135 72.222 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.