Multiple sequence alignment - TraesCS1B01G330700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G330700 chr1B 100.000 3158 0 0 1 3158 556296343 556299500 0.000000e+00 5832
1 TraesCS1B01G330700 chr1B 94.118 1870 80 16 668 2513 556251090 556252953 0.000000e+00 2817
2 TraesCS1B01G330700 chr1B 96.947 1638 28 6 721 2337 556264538 556266174 0.000000e+00 2728
3 TraesCS1B01G330700 chr1B 89.312 2049 138 35 536 2513 556662631 556664669 0.000000e+00 2495
4 TraesCS1B01G330700 chr1B 89.194 1823 126 25 536 2312 556064787 556062990 0.000000e+00 2209
5 TraesCS1B01G330700 chr1B 93.997 683 40 1 1 682 556244635 556245317 0.000000e+00 1033
6 TraesCS1B01G330700 chr1B 95.751 353 11 1 2569 2917 310754413 310754765 1.640000e-157 566
7 TraesCS1B01G330700 chr1B 82.685 514 49 26 2085 2567 556266339 556266843 1.350000e-113 420
8 TraesCS1B01G330700 chr1B 83.523 176 25 3 536 708 556263902 556264076 9.060000e-36 161
9 TraesCS1B01G330700 chr1A 92.823 2076 97 24 536 2576 509777240 509775182 0.000000e+00 2961
10 TraesCS1B01G330700 chr1A 92.437 2089 100 29 536 2576 509704011 509701933 0.000000e+00 2929
11 TraesCS1B01G330700 chr1A 90.603 1958 106 29 536 2433 509849916 509847977 0.000000e+00 2525
12 TraesCS1B01G330700 chr1A 91.617 1837 88 29 536 2324 509720391 509718573 0.000000e+00 2479
13 TraesCS1B01G330700 chr1A 91.453 1837 91 29 536 2324 509793771 509791953 0.000000e+00 2462
14 TraesCS1B01G330700 chr1A 89.990 1948 99 40 701 2574 509915114 509913189 0.000000e+00 2429
15 TraesCS1B01G330700 chr1A 93.469 245 13 2 2917 3158 509701936 509701692 8.330000e-96 361
16 TraesCS1B01G330700 chr1A 93.469 245 13 2 2917 3158 509775185 509774941 8.330000e-96 361
17 TraesCS1B01G330700 chr1A 93.061 245 14 2 2917 3158 509492060 509491816 3.870000e-94 355
18 TraesCS1B01G330700 chr1D 89.942 2247 121 46 413 2574 412641598 412643824 0.000000e+00 2800
19 TraesCS1B01G330700 chr1D 89.942 2247 120 47 413 2574 412745577 412747802 0.000000e+00 2800
20 TraesCS1B01G330700 chr1D 90.241 2162 108 44 497 2574 412762823 412764965 0.000000e+00 2728
21 TraesCS1B01G330700 chr1D 91.872 1784 82 24 536 2267 412659986 412661758 0.000000e+00 2433
22 TraesCS1B01G330700 chr1D 90.600 1734 77 24 536 2219 412786369 412788066 0.000000e+00 2220
23 TraesCS1B01G330700 chr1D 91.640 1543 82 28 998 2513 412897765 412899287 0.000000e+00 2091
24 TraesCS1B01G330700 chr4B 89.044 1862 133 28 536 2348 633465595 633467434 0.000000e+00 2242
25 TraesCS1B01G330700 chr4B 96.000 350 10 1 2577 2922 234156263 234156612 1.640000e-157 566
26 TraesCS1B01G330700 chr4B 85.047 214 25 4 40 251 417209057 417209265 8.870000e-51 211
27 TraesCS1B01G330700 chr7A 96.821 346 7 1 2576 2917 673400772 673401117 2.730000e-160 575
28 TraesCS1B01G330700 chr7A 96.307 352 9 1 2572 2919 710491047 710491398 2.730000e-160 575
29 TraesCS1B01G330700 chr7A 95.739 352 11 1 2572 2919 707812698 707812347 5.910000e-157 564
30 TraesCS1B01G330700 chr4A 96.286 350 9 1 2574 2919 690223526 690223177 3.530000e-159 571
31 TraesCS1B01G330700 chr6A 96.532 346 8 1 2576 2917 604530 604185 1.270000e-158 569
32 TraesCS1B01G330700 chr5A 96.011 351 10 1 2574 2920 45711515 45711865 4.570000e-158 568
33 TraesCS1B01G330700 chr2B 95.739 352 10 2 2573 2920 89426773 89427123 2.130000e-156 562
34 TraesCS1B01G330700 chr7D 87.160 257 33 0 1 257 32153508 32153764 3.080000e-75 292
35 TraesCS1B01G330700 chr4D 84.186 215 25 6 40 251 337999485 337999693 1.920000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G330700 chr1B 556296343 556299500 3157 False 5832 5832 100.000000 1 3158 1 chr1B.!!$F4 3157
1 TraesCS1B01G330700 chr1B 556251090 556252953 1863 False 2817 2817 94.118000 668 2513 1 chr1B.!!$F3 1845
2 TraesCS1B01G330700 chr1B 556662631 556664669 2038 False 2495 2495 89.312000 536 2513 1 chr1B.!!$F5 1977
3 TraesCS1B01G330700 chr1B 556062990 556064787 1797 True 2209 2209 89.194000 536 2312 1 chr1B.!!$R1 1776
4 TraesCS1B01G330700 chr1B 556263902 556266843 2941 False 1103 2728 87.718333 536 2567 3 chr1B.!!$F6 2031
5 TraesCS1B01G330700 chr1B 556244635 556245317 682 False 1033 1033 93.997000 1 682 1 chr1B.!!$F2 681
6 TraesCS1B01G330700 chr1A 509847977 509849916 1939 True 2525 2525 90.603000 536 2433 1 chr1A.!!$R4 1897
7 TraesCS1B01G330700 chr1A 509718573 509720391 1818 True 2479 2479 91.617000 536 2324 1 chr1A.!!$R2 1788
8 TraesCS1B01G330700 chr1A 509791953 509793771 1818 True 2462 2462 91.453000 536 2324 1 chr1A.!!$R3 1788
9 TraesCS1B01G330700 chr1A 509913189 509915114 1925 True 2429 2429 89.990000 701 2574 1 chr1A.!!$R5 1873
10 TraesCS1B01G330700 chr1A 509774941 509777240 2299 True 1661 2961 93.146000 536 3158 2 chr1A.!!$R7 2622
11 TraesCS1B01G330700 chr1A 509701692 509704011 2319 True 1645 2929 92.953000 536 3158 2 chr1A.!!$R6 2622
12 TraesCS1B01G330700 chr1D 412641598 412643824 2226 False 2800 2800 89.942000 413 2574 1 chr1D.!!$F1 2161
13 TraesCS1B01G330700 chr1D 412745577 412747802 2225 False 2800 2800 89.942000 413 2574 1 chr1D.!!$F3 2161
14 TraesCS1B01G330700 chr1D 412762823 412764965 2142 False 2728 2728 90.241000 497 2574 1 chr1D.!!$F4 2077
15 TraesCS1B01G330700 chr1D 412659986 412661758 1772 False 2433 2433 91.872000 536 2267 1 chr1D.!!$F2 1731
16 TraesCS1B01G330700 chr1D 412786369 412788066 1697 False 2220 2220 90.600000 536 2219 1 chr1D.!!$F5 1683
17 TraesCS1B01G330700 chr1D 412897765 412899287 1522 False 2091 2091 91.640000 998 2513 1 chr1D.!!$F6 1515
18 TraesCS1B01G330700 chr4B 633465595 633467434 1839 False 2242 2242 89.044000 536 2348 1 chr4B.!!$F3 1812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.107508 GGCTTCTGGATGTGCTGCTA 60.108 55.0 0.0 0.0 0.0 3.49 F
89 90 0.524414 CCACGACTACATCACCACGA 59.476 55.0 0.0 0.0 0.0 4.35 F
304 305 0.606401 TGCCTCTTTTTGCCTCCTCG 60.606 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 2418 0.531974 GGTGTTGTCGTTGAGGCTGA 60.532 55.000 0.00 0.0 0.00 4.26 R
2058 2608 4.742201 GAGGCGGCGAAGTCAGCA 62.742 66.667 12.98 0.0 36.08 4.41 R
2290 3300 1.121967 GTTCGTCGTGCGTACAAGAAG 59.878 52.381 4.09 0.0 40.02 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.258206 CCACCACAAAGGCAGTGT 57.742 55.556 0.00 0.00 43.14 3.55
59 60 2.467826 GCGAGGCTTCTGGATGTGC 61.468 63.158 0.00 0.00 0.00 4.57
64 65 0.107508 GGCTTCTGGATGTGCTGCTA 60.108 55.000 0.00 0.00 0.00 3.49
89 90 0.524414 CCACGACTACATCACCACGA 59.476 55.000 0.00 0.00 0.00 4.35
95 96 3.490933 CGACTACATCACCACGATTCCAT 60.491 47.826 0.00 0.00 29.21 3.41
117 118 1.297158 GCATCGCGTCTGCATCAAC 60.297 57.895 24.37 1.55 42.97 3.18
193 194 5.698741 ACCAATCACACTTCTGATCCATA 57.301 39.130 0.00 0.00 30.12 2.74
195 196 5.426509 ACCAATCACACTTCTGATCCATAGA 59.573 40.000 0.00 0.00 30.12 1.98
215 216 8.153550 CCATAGAAGGTGTGCTAATTAGAGATT 58.846 37.037 16.85 1.74 0.00 2.40
216 217 8.986847 CATAGAAGGTGTGCTAATTAGAGATTG 58.013 37.037 16.85 0.00 0.00 2.67
218 219 7.044798 AGAAGGTGTGCTAATTAGAGATTGAC 58.955 38.462 16.85 3.42 0.00 3.18
235 236 7.554118 AGAGATTGACATCCAATTCACGTTAAT 59.446 33.333 0.00 0.00 45.00 1.40
239 240 8.554835 TTGACATCCAATTCACGTTAATCTTA 57.445 30.769 0.00 0.00 0.00 2.10
304 305 0.606401 TGCCTCTTTTTGCCTCCTCG 60.606 55.000 0.00 0.00 0.00 4.63
307 308 1.238439 CTCTTTTTGCCTCCTCGCAA 58.762 50.000 0.00 0.00 46.72 4.85
357 358 2.169561 ACTTAGAGCTAGGCAAAGAGGC 59.830 50.000 0.00 0.00 44.61 4.70
436 438 2.030981 CGAGTATCCTTAGCCGAGAACC 60.031 54.545 0.00 0.00 0.00 3.62
452 454 0.818040 AACCACACTCGGCAAAGTCC 60.818 55.000 0.00 0.00 0.00 3.85
456 458 1.066143 CACACTCGGCAAAGTCCCTAT 60.066 52.381 0.00 0.00 0.00 2.57
494 497 2.257207 TCCCGAGTTCTCCTGACATTT 58.743 47.619 0.00 0.00 0.00 2.32
568 571 4.692625 GCGCTGATACAAACATATGGATCT 59.307 41.667 7.80 0.00 40.66 2.75
621 634 1.134753 TGTCATTCAATCATTGCCCGC 59.865 47.619 0.00 0.00 0.00 6.13
713 745 8.671921 AGTAGATTGCTGTTTAGTGAATTGATG 58.328 33.333 0.00 0.00 0.00 3.07
977 1473 1.589993 CAGCCACCTAGCGATCGTG 60.590 63.158 17.81 6.33 38.01 4.35
984 1480 2.095668 CACCTAGCGATCGTGGTATCTC 60.096 54.545 22.15 3.65 0.00 2.75
1669 2219 1.918800 CCCCCGACCTCCAACTTCT 60.919 63.158 0.00 0.00 0.00 2.85
2058 2608 2.495084 GCCTTCAAGGACGAGTTCTTT 58.505 47.619 7.98 0.00 37.67 2.52
2108 2658 3.055719 CAACGCCAACCCGCTCAT 61.056 61.111 0.00 0.00 0.00 2.90
2190 3190 7.112452 AGAAGTACAAGGCTGTTTTGATTTT 57.888 32.000 0.00 0.00 36.96 1.82
2191 3191 6.980397 AGAAGTACAAGGCTGTTTTGATTTTG 59.020 34.615 0.00 0.00 36.96 2.44
2192 3192 6.220726 AGTACAAGGCTGTTTTGATTTTGT 57.779 33.333 0.00 0.00 36.96 2.83
2226 3234 6.250819 CCTGTAAATTGCTGTAAGATTGTCG 58.749 40.000 0.00 0.00 34.07 4.35
2246 3254 3.440872 TCGTAGCTCCTTTCTCTCTCAAC 59.559 47.826 0.00 0.00 0.00 3.18
2248 3256 4.082463 CGTAGCTCCTTTCTCTCTCAACTT 60.082 45.833 0.00 0.00 0.00 2.66
2290 3300 7.945033 ATTGTTTCATTACAACCATGTGAAC 57.055 32.000 0.00 0.00 40.53 3.18
2300 3310 4.272504 ACAACCATGTGAACTTCTTGTACG 59.727 41.667 0.00 0.00 38.69 3.67
2360 3388 0.445436 GTTGTCATCTGGAGCGCTTG 59.555 55.000 13.26 5.33 0.00 4.01
2541 3586 1.792949 CGATTGGATAGCGGCTAACAC 59.207 52.381 14.54 7.79 0.00 3.32
2567 3612 2.376808 CAATATTTTGGGCGTTGGCA 57.623 45.000 0.00 0.00 42.47 4.92
2574 3619 1.253593 TTGGGCGTTGGCATGCATTA 61.254 50.000 21.36 1.79 42.47 1.90
2575 3620 1.066257 GGGCGTTGGCATGCATTAG 59.934 57.895 21.36 9.00 42.47 1.73
2576 3621 1.383456 GGGCGTTGGCATGCATTAGA 61.383 55.000 21.36 0.00 42.47 2.10
2577 3622 0.029834 GGCGTTGGCATGCATTAGAG 59.970 55.000 21.36 6.40 42.47 2.43
2578 3623 0.029834 GCGTTGGCATGCATTAGAGG 59.970 55.000 21.36 6.67 39.62 3.69
2579 3624 0.664761 CGTTGGCATGCATTAGAGGG 59.335 55.000 21.36 0.00 0.00 4.30
2580 3625 1.767759 GTTGGCATGCATTAGAGGGT 58.232 50.000 21.36 0.00 0.00 4.34
2581 3626 1.406539 GTTGGCATGCATTAGAGGGTG 59.593 52.381 21.36 0.00 0.00 4.61
2582 3627 0.752743 TGGCATGCATTAGAGGGTGC 60.753 55.000 21.36 0.00 41.61 5.01
2583 3628 0.466922 GGCATGCATTAGAGGGTGCT 60.467 55.000 21.36 0.00 41.78 4.40
2584 3629 1.396653 GCATGCATTAGAGGGTGCTT 58.603 50.000 14.21 0.00 41.78 3.91
2585 3630 1.066605 GCATGCATTAGAGGGTGCTTG 59.933 52.381 14.21 8.35 44.56 4.01
2586 3631 1.679680 CATGCATTAGAGGGTGCTTGG 59.320 52.381 0.00 0.00 40.65 3.61
2587 3632 0.991146 TGCATTAGAGGGTGCTTGGA 59.009 50.000 0.00 0.00 41.78 3.53
2588 3633 1.565759 TGCATTAGAGGGTGCTTGGAT 59.434 47.619 0.00 0.00 41.78 3.41
2589 3634 2.777114 TGCATTAGAGGGTGCTTGGATA 59.223 45.455 0.00 0.00 41.78 2.59
2590 3635 3.142174 GCATTAGAGGGTGCTTGGATAC 58.858 50.000 0.00 0.00 38.30 2.24
2591 3636 3.393800 CATTAGAGGGTGCTTGGATACG 58.606 50.000 0.00 0.00 42.51 3.06
2592 3637 2.154567 TAGAGGGTGCTTGGATACGT 57.845 50.000 0.00 0.00 42.51 3.57
2593 3638 1.276622 AGAGGGTGCTTGGATACGTT 58.723 50.000 0.00 0.00 42.51 3.99
2594 3639 1.628846 AGAGGGTGCTTGGATACGTTT 59.371 47.619 0.00 0.00 42.51 3.60
2595 3640 2.039879 AGAGGGTGCTTGGATACGTTTT 59.960 45.455 0.00 0.00 42.51 2.43
2596 3641 3.262405 AGAGGGTGCTTGGATACGTTTTA 59.738 43.478 0.00 0.00 42.51 1.52
2597 3642 3.606687 AGGGTGCTTGGATACGTTTTAG 58.393 45.455 0.00 0.00 42.51 1.85
2598 3643 3.008704 AGGGTGCTTGGATACGTTTTAGT 59.991 43.478 0.00 0.00 42.51 2.24
2599 3644 3.373130 GGGTGCTTGGATACGTTTTAGTC 59.627 47.826 0.00 0.00 42.51 2.59
2600 3645 3.373130 GGTGCTTGGATACGTTTTAGTCC 59.627 47.826 0.00 0.00 42.51 3.85
2601 3646 3.373130 GTGCTTGGATACGTTTTAGTCCC 59.627 47.826 0.00 0.00 42.51 4.46
2602 3647 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
2603 3648 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
2604 3649 4.035208 GCTTGGATACGTTTTAGTCCCATG 59.965 45.833 0.00 0.00 42.51 3.66
2605 3650 5.423704 TTGGATACGTTTTAGTCCCATGA 57.576 39.130 0.00 0.00 42.51 3.07
2606 3651 4.761975 TGGATACGTTTTAGTCCCATGAC 58.238 43.478 0.00 0.00 40.25 3.06
2608 3653 5.657745 TGGATACGTTTTAGTCCCATGACTA 59.342 40.000 0.00 0.00 45.97 2.59
2619 3664 4.514401 GTCCCATGACTAAAAGTAGTGGG 58.486 47.826 17.22 17.22 46.41 4.61
2622 3667 5.422214 CCATGACTAAAAGTAGTGGGACT 57.578 43.478 0.00 0.00 40.82 3.85
2623 3668 6.540438 CCATGACTAAAAGTAGTGGGACTA 57.460 41.667 0.00 0.00 40.82 2.59
2624 3669 6.942976 CCATGACTAAAAGTAGTGGGACTAA 58.057 40.000 0.00 0.00 40.82 2.24
2625 3670 7.391620 CCATGACTAAAAGTAGTGGGACTAAA 58.608 38.462 0.00 0.00 40.82 1.85
2626 3671 7.881232 CCATGACTAAAAGTAGTGGGACTAAAA 59.119 37.037 0.00 0.00 40.82 1.52
2627 3672 8.718734 CATGACTAAAAGTAGTGGGACTAAAAC 58.281 37.037 0.00 0.00 40.82 2.43
2628 3673 8.026396 TGACTAAAAGTAGTGGGACTAAAACT 57.974 34.615 0.00 0.00 40.82 2.66
2629 3674 8.488668 TGACTAAAAGTAGTGGGACTAAAACTT 58.511 33.333 0.00 0.00 40.82 2.66
2630 3675 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
2631 3676 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
2632 3677 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
2633 3678 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
2634 3679 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
2635 3680 3.676093 AGTGGGACTAAAACTTGCTAGC 58.324 45.455 8.10 8.10 0.00 3.42
2636 3681 2.747989 GTGGGACTAAAACTTGCTAGCC 59.252 50.000 13.29 0.00 0.00 3.93
2637 3682 2.642807 TGGGACTAAAACTTGCTAGCCT 59.357 45.455 13.29 0.00 0.00 4.58
2638 3683 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
2639 3684 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
2640 3685 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
2641 3686 3.676093 ACTAAAACTTGCTAGCCTCACC 58.324 45.455 13.29 0.00 0.00 4.02
2642 3687 1.911057 AAAACTTGCTAGCCTCACCC 58.089 50.000 13.29 0.00 0.00 4.61
2643 3688 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51
2644 3689 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00
2645 3690 0.254178 ACTTGCTAGCCTCACCCATG 59.746 55.000 13.29 0.00 0.00 3.66
2646 3691 0.543277 CTTGCTAGCCTCACCCATGA 59.457 55.000 13.29 0.00 0.00 3.07
2647 3692 1.142465 CTTGCTAGCCTCACCCATGAT 59.858 52.381 13.29 0.00 33.22 2.45
2648 3693 1.216064 TGCTAGCCTCACCCATGATT 58.784 50.000 13.29 0.00 33.22 2.57
2649 3694 1.134007 TGCTAGCCTCACCCATGATTG 60.134 52.381 13.29 0.00 33.22 2.67
2650 3695 1.816961 GCTAGCCTCACCCATGATTGG 60.817 57.143 2.29 0.00 43.23 3.16
2651 3696 1.770658 CTAGCCTCACCCATGATTGGA 59.229 52.381 0.00 0.00 46.92 3.53
2652 3697 1.229131 AGCCTCACCCATGATTGGAT 58.771 50.000 0.00 0.00 46.92 3.41
2653 3698 1.144503 AGCCTCACCCATGATTGGATC 59.855 52.381 0.00 0.00 46.92 3.36
2654 3699 1.820877 GCCTCACCCATGATTGGATCC 60.821 57.143 4.20 4.20 46.92 3.36
2655 3700 1.496001 CCTCACCCATGATTGGATCCA 59.504 52.381 11.44 11.44 46.92 3.41
2656 3701 2.091720 CCTCACCCATGATTGGATCCAA 60.092 50.000 28.92 28.92 46.92 3.53
2657 3702 3.628002 CCTCACCCATGATTGGATCCAAA 60.628 47.826 30.28 16.10 46.92 3.28
2658 3703 4.220724 CTCACCCATGATTGGATCCAAAT 58.779 43.478 30.28 17.69 46.92 2.32
2659 3704 5.387788 CTCACCCATGATTGGATCCAAATA 58.612 41.667 30.28 21.42 46.92 1.40
2660 3705 5.139727 TCACCCATGATTGGATCCAAATAC 58.860 41.667 30.28 22.53 46.92 1.89
2661 3706 5.103558 TCACCCATGATTGGATCCAAATACT 60.104 40.000 30.28 14.65 46.92 2.12
2662 3707 6.102468 TCACCCATGATTGGATCCAAATACTA 59.898 38.462 30.28 15.00 46.92 1.82
2663 3708 6.777091 CACCCATGATTGGATCCAAATACTAA 59.223 38.462 30.28 8.31 46.92 2.24
2664 3709 7.287466 CACCCATGATTGGATCCAAATACTAAA 59.713 37.037 30.28 6.08 46.92 1.85
2665 3710 7.506938 ACCCATGATTGGATCCAAATACTAAAG 59.493 37.037 30.28 16.72 46.92 1.85
2666 3711 7.725397 CCCATGATTGGATCCAAATACTAAAGA 59.275 37.037 30.28 4.46 46.92 2.52
2667 3712 8.790718 CCATGATTGGATCCAAATACTAAAGAG 58.209 37.037 30.28 11.77 46.92 2.85
2668 3713 9.565090 CATGATTGGATCCAAATACTAAAGAGA 57.435 33.333 30.28 3.67 39.55 3.10
2669 3714 8.964476 TGATTGGATCCAAATACTAAAGAGAC 57.036 34.615 30.28 9.22 39.55 3.36
2670 3715 8.772250 TGATTGGATCCAAATACTAAAGAGACT 58.228 33.333 30.28 9.17 39.55 3.24
2703 3748 9.866655 AAGTTATTGAGCATTTATTATCCTCCA 57.133 29.630 0.00 0.00 0.00 3.86
2704 3749 9.866655 AGTTATTGAGCATTTATTATCCTCCAA 57.133 29.630 0.00 0.00 0.00 3.53
2707 3752 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
2708 3753 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
2709 3754 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
2710 3755 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
2711 3756 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
2712 3757 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
2713 3758 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
2714 3759 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
2715 3760 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
2716 3761 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
2717 3762 0.704076 CCTCCAAACCCTCCAATCCA 59.296 55.000 0.00 0.00 0.00 3.41
2718 3763 1.341383 CCTCCAAACCCTCCAATCCAG 60.341 57.143 0.00 0.00 0.00 3.86
2719 3764 1.635487 CTCCAAACCCTCCAATCCAGA 59.365 52.381 0.00 0.00 0.00 3.86
2720 3765 2.041620 CTCCAAACCCTCCAATCCAGAA 59.958 50.000 0.00 0.00 0.00 3.02
2721 3766 2.171003 CCAAACCCTCCAATCCAGAAC 58.829 52.381 0.00 0.00 0.00 3.01
2722 3767 2.225117 CCAAACCCTCCAATCCAGAACT 60.225 50.000 0.00 0.00 0.00 3.01
2723 3768 3.084786 CAAACCCTCCAATCCAGAACTC 58.915 50.000 0.00 0.00 0.00 3.01
2724 3769 0.905357 ACCCTCCAATCCAGAACTCG 59.095 55.000 0.00 0.00 0.00 4.18
2725 3770 0.462759 CCCTCCAATCCAGAACTCGC 60.463 60.000 0.00 0.00 0.00 5.03
2726 3771 0.250234 CCTCCAATCCAGAACTCGCA 59.750 55.000 0.00 0.00 0.00 5.10
2727 3772 1.134280 CCTCCAATCCAGAACTCGCAT 60.134 52.381 0.00 0.00 0.00 4.73
2728 3773 1.938577 CTCCAATCCAGAACTCGCATG 59.061 52.381 0.00 0.00 0.00 4.06
2729 3774 1.278985 TCCAATCCAGAACTCGCATGT 59.721 47.619 0.00 0.00 0.00 3.21
2730 3775 1.399440 CCAATCCAGAACTCGCATGTG 59.601 52.381 0.00 0.00 0.00 3.21
2731 3776 2.079158 CAATCCAGAACTCGCATGTGT 58.921 47.619 6.09 0.00 0.00 3.72
2732 3777 2.479566 ATCCAGAACTCGCATGTGTT 57.520 45.000 6.09 3.50 34.68 3.32
2733 3778 3.610040 ATCCAGAACTCGCATGTGTTA 57.390 42.857 6.09 0.00 32.29 2.41
2734 3779 3.394674 TCCAGAACTCGCATGTGTTAA 57.605 42.857 6.09 0.00 32.29 2.01
2735 3780 3.734463 TCCAGAACTCGCATGTGTTAAA 58.266 40.909 6.09 0.00 32.29 1.52
2736 3781 3.745975 TCCAGAACTCGCATGTGTTAAAG 59.254 43.478 6.09 0.00 32.29 1.85
2737 3782 3.120199 CCAGAACTCGCATGTGTTAAAGG 60.120 47.826 6.09 0.00 32.29 3.11
2738 3783 3.745975 CAGAACTCGCATGTGTTAAAGGA 59.254 43.478 6.09 0.00 32.29 3.36
2739 3784 3.997021 AGAACTCGCATGTGTTAAAGGAG 59.003 43.478 6.09 0.00 32.29 3.69
2740 3785 3.678056 ACTCGCATGTGTTAAAGGAGA 57.322 42.857 6.09 0.00 0.00 3.71
2741 3786 3.589988 ACTCGCATGTGTTAAAGGAGAG 58.410 45.455 6.09 0.00 0.00 3.20
2742 3787 2.932614 CTCGCATGTGTTAAAGGAGAGG 59.067 50.000 6.09 0.00 0.00 3.69
2743 3788 2.565391 TCGCATGTGTTAAAGGAGAGGA 59.435 45.455 6.09 0.00 0.00 3.71
2744 3789 3.007506 TCGCATGTGTTAAAGGAGAGGAA 59.992 43.478 6.09 0.00 0.00 3.36
2745 3790 3.941483 CGCATGTGTTAAAGGAGAGGAAT 59.059 43.478 0.00 0.00 0.00 3.01
2746 3791 4.396166 CGCATGTGTTAAAGGAGAGGAATT 59.604 41.667 0.00 0.00 0.00 2.17
2747 3792 5.584649 CGCATGTGTTAAAGGAGAGGAATTA 59.415 40.000 0.00 0.00 0.00 1.40
2748 3793 6.093495 CGCATGTGTTAAAGGAGAGGAATTAA 59.907 38.462 0.00 0.00 0.00 1.40
2749 3794 7.361713 CGCATGTGTTAAAGGAGAGGAATTAAA 60.362 37.037 0.00 0.00 0.00 1.52
2750 3795 8.470002 GCATGTGTTAAAGGAGAGGAATTAAAT 58.530 33.333 0.00 0.00 0.00 1.40
2751 3796 9.793252 CATGTGTTAAAGGAGAGGAATTAAATG 57.207 33.333 0.00 0.00 0.00 2.32
2752 3797 9.753674 ATGTGTTAAAGGAGAGGAATTAAATGA 57.246 29.630 0.00 0.00 0.00 2.57
2753 3798 9.231297 TGTGTTAAAGGAGAGGAATTAAATGAG 57.769 33.333 0.00 0.00 0.00 2.90
2754 3799 9.449719 GTGTTAAAGGAGAGGAATTAAATGAGA 57.550 33.333 0.00 0.00 0.00 3.27
2759 3804 7.986553 AGGAGAGGAATTAAATGAGAAGAGA 57.013 36.000 0.00 0.00 0.00 3.10
2760 3805 8.021898 AGGAGAGGAATTAAATGAGAAGAGAG 57.978 38.462 0.00 0.00 0.00 3.20
2761 3806 7.843760 AGGAGAGGAATTAAATGAGAAGAGAGA 59.156 37.037 0.00 0.00 0.00 3.10
2762 3807 8.143835 GGAGAGGAATTAAATGAGAAGAGAGAG 58.856 40.741 0.00 0.00 0.00 3.20
2763 3808 8.021898 AGAGGAATTAAATGAGAAGAGAGAGG 57.978 38.462 0.00 0.00 0.00 3.69
2764 3809 7.071071 AGAGGAATTAAATGAGAAGAGAGAGGG 59.929 40.741 0.00 0.00 0.00 4.30
2765 3810 5.762711 GGAATTAAATGAGAAGAGAGAGGGC 59.237 44.000 0.00 0.00 0.00 5.19
2766 3811 6.409120 GGAATTAAATGAGAAGAGAGAGGGCT 60.409 42.308 0.00 0.00 0.00 5.19
2767 3812 7.202047 GGAATTAAATGAGAAGAGAGAGGGCTA 60.202 40.741 0.00 0.00 0.00 3.93
2768 3813 7.682787 ATTAAATGAGAAGAGAGAGGGCTAA 57.317 36.000 0.00 0.00 0.00 3.09
2769 3814 7.682787 TTAAATGAGAAGAGAGAGGGCTAAT 57.317 36.000 0.00 0.00 0.00 1.73
2770 3815 8.783660 TTAAATGAGAAGAGAGAGGGCTAATA 57.216 34.615 0.00 0.00 0.00 0.98
2771 3816 6.664428 AATGAGAAGAGAGAGGGCTAATAC 57.336 41.667 0.00 0.00 0.00 1.89
2772 3817 5.130705 TGAGAAGAGAGAGGGCTAATACA 57.869 43.478 0.00 0.00 0.00 2.29
2773 3818 5.710646 TGAGAAGAGAGAGGGCTAATACAT 58.289 41.667 0.00 0.00 0.00 2.29
2774 3819 6.853490 TGAGAAGAGAGAGGGCTAATACATA 58.147 40.000 0.00 0.00 0.00 2.29
2775 3820 7.474445 TGAGAAGAGAGAGGGCTAATACATAT 58.526 38.462 0.00 0.00 0.00 1.78
2776 3821 7.952930 TGAGAAGAGAGAGGGCTAATACATATT 59.047 37.037 0.00 0.00 0.00 1.28
2777 3822 8.734593 AGAAGAGAGAGGGCTAATACATATTT 57.265 34.615 0.00 0.00 0.00 1.40
2778 3823 9.165057 AGAAGAGAGAGGGCTAATACATATTTT 57.835 33.333 0.00 0.00 0.00 1.82
2781 3826 9.608718 AGAGAGAGGGCTAATACATATTTTAGT 57.391 33.333 0.00 0.00 0.00 2.24
2785 3830 9.617053 AGAGGGCTAATACATATTTTAGTAGGT 57.383 33.333 0.00 0.00 0.00 3.08
2823 3868 7.689446 AAATTTTTAGCCTCAAGACTAGTCC 57.311 36.000 19.38 2.89 0.00 3.85
2824 3869 6.628644 ATTTTTAGCCTCAAGACTAGTCCT 57.371 37.500 19.38 10.36 0.00 3.85
2825 3870 7.735326 ATTTTTAGCCTCAAGACTAGTCCTA 57.265 36.000 19.38 9.39 0.00 2.94
2826 3871 6.777213 TTTTAGCCTCAAGACTAGTCCTAG 57.223 41.667 19.38 13.33 39.04 3.02
2840 3885 7.499200 ACTAGTCCTAGTCTCTCTTTAGTCA 57.501 40.000 1.08 0.00 42.30 3.41
2841 3886 7.562135 ACTAGTCCTAGTCTCTCTTTAGTCAG 58.438 42.308 1.08 0.00 42.30 3.51
2842 3887 5.751586 AGTCCTAGTCTCTCTTTAGTCAGG 58.248 45.833 0.00 0.00 0.00 3.86
2843 3888 4.885325 GTCCTAGTCTCTCTTTAGTCAGGG 59.115 50.000 0.00 0.00 0.00 4.45
2844 3889 4.079672 TCCTAGTCTCTCTTTAGTCAGGGG 60.080 50.000 0.00 0.00 0.00 4.79
2845 3890 3.837399 AGTCTCTCTTTAGTCAGGGGT 57.163 47.619 0.00 0.00 0.00 4.95
2846 3891 3.436243 AGTCTCTCTTTAGTCAGGGGTG 58.564 50.000 0.00 0.00 0.00 4.61
2847 3892 2.093921 GTCTCTCTTTAGTCAGGGGTGC 60.094 54.545 0.00 0.00 0.00 5.01
2848 3893 2.183679 CTCTCTTTAGTCAGGGGTGCT 58.816 52.381 0.00 0.00 0.00 4.40
2849 3894 2.569404 CTCTCTTTAGTCAGGGGTGCTT 59.431 50.000 0.00 0.00 0.00 3.91
2850 3895 2.303022 TCTCTTTAGTCAGGGGTGCTTG 59.697 50.000 0.00 0.00 0.00 4.01
2851 3896 1.351017 TCTTTAGTCAGGGGTGCTTGG 59.649 52.381 0.00 0.00 0.00 3.61
2852 3897 1.351017 CTTTAGTCAGGGGTGCTTGGA 59.649 52.381 0.00 0.00 0.00 3.53
2853 3898 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
2854 3899 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
2855 3900 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
2856 3901 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
2857 3902 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
2858 3903 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
2859 3904 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
2860 3905 0.888619 GGGGTGCTTGGAACTTTAGC 59.111 55.000 0.00 0.00 35.50 3.09
2861 3906 0.888619 GGGTGCTTGGAACTTTAGCC 59.111 55.000 0.00 0.00 34.03 3.93
2862 3907 1.547901 GGGTGCTTGGAACTTTAGCCT 60.548 52.381 0.00 0.00 34.03 4.58
2863 3908 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
2864 3909 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
2865 3910 3.307480 GGTGCTTGGAACTTTAGCCTCTA 60.307 47.826 0.00 0.00 34.03 2.43
2866 3911 4.324267 GTGCTTGGAACTTTAGCCTCTAA 58.676 43.478 0.00 0.00 34.03 2.10
2867 3912 4.760204 GTGCTTGGAACTTTAGCCTCTAAA 59.240 41.667 0.00 0.00 34.03 1.85
2868 3913 5.240844 GTGCTTGGAACTTTAGCCTCTAAAA 59.759 40.000 0.00 0.00 34.03 1.52
2869 3914 5.830991 TGCTTGGAACTTTAGCCTCTAAAAA 59.169 36.000 0.00 0.00 34.03 1.94
2912 3957 7.898014 AAATAGTCCCTTAAATCCAATCACC 57.102 36.000 0.00 0.00 0.00 4.02
2913 3958 4.251103 AGTCCCTTAAATCCAATCACCC 57.749 45.455 0.00 0.00 0.00 4.61
2914 3959 3.858638 AGTCCCTTAAATCCAATCACCCT 59.141 43.478 0.00 0.00 0.00 4.34
2915 3960 4.079730 AGTCCCTTAAATCCAATCACCCTC 60.080 45.833 0.00 0.00 0.00 4.30
2916 3961 4.079730 GTCCCTTAAATCCAATCACCCTCT 60.080 45.833 0.00 0.00 0.00 3.69
2917 3962 4.544152 TCCCTTAAATCCAATCACCCTCTT 59.456 41.667 0.00 0.00 0.00 2.85
2926 3971 4.467795 TCCAATCACCCTCTTAGTCTCTTG 59.532 45.833 0.00 0.00 0.00 3.02
2929 3974 6.234177 CAATCACCCTCTTAGTCTCTTGTTT 58.766 40.000 0.00 0.00 0.00 2.83
2940 3985 8.483758 TCTTAGTCTCTTGTTTTTAGGAAGTGT 58.516 33.333 0.00 0.00 0.00 3.55
2957 4002 7.454225 AGGAAGTGTATCTTTATATTCCCTGC 58.546 38.462 0.00 0.00 36.26 4.85
2985 4031 0.848305 GAAAAGCAAGTGCACAAGCG 59.152 50.000 21.04 5.02 46.23 4.68
3001 4047 1.453155 AGCGCGAAGAACAATGGATT 58.547 45.000 12.10 0.00 0.00 3.01
3003 4049 1.130373 GCGCGAAGAACAATGGATTCA 59.870 47.619 12.10 0.00 0.00 2.57
3145 4193 0.737219 GCAGCTTGGAGCATTACTGG 59.263 55.000 2.47 0.00 45.56 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.759973 ATCCAGAAGCCTCGCCGA 60.760 61.111 0.00 0.00 0.00 5.54
59 60 0.395311 TAGTCGTGGAGGGGTAGCAG 60.395 60.000 0.00 0.00 0.00 4.24
64 65 0.040646 TGATGTAGTCGTGGAGGGGT 59.959 55.000 0.00 0.00 0.00 4.95
89 90 0.882042 GACGCGATGCAGGATGGAAT 60.882 55.000 15.93 0.00 42.43 3.01
117 118 2.418083 GGCAAAATCCCTCGCCTGG 61.418 63.158 0.00 0.00 41.50 4.45
193 194 7.044798 GTCAATCTCTAATTAGCACACCTTCT 58.955 38.462 7.67 0.00 0.00 2.85
195 196 6.711277 TGTCAATCTCTAATTAGCACACCTT 58.289 36.000 7.67 0.00 0.00 3.50
202 203 9.060347 TGAATTGGATGTCAATCTCTAATTAGC 57.940 33.333 7.67 0.00 44.68 3.09
215 216 8.554835 TTAAGATTAACGTGAATTGGATGTCA 57.445 30.769 0.00 0.00 0.00 3.58
216 217 9.490663 CTTTAAGATTAACGTGAATTGGATGTC 57.509 33.333 0.00 0.00 0.00 3.06
218 219 7.432252 GCCTTTAAGATTAACGTGAATTGGATG 59.568 37.037 0.00 0.00 0.00 3.51
235 236 8.932791 CGACTTGTTAGAATTAAGCCTTTAAGA 58.067 33.333 0.00 0.00 32.58 2.10
239 240 5.705905 AGCGACTTGTTAGAATTAAGCCTTT 59.294 36.000 0.00 0.00 0.00 3.11
307 308 4.173256 CTCGACAAAAACAGGCACTTTTT 58.827 39.130 0.00 0.00 40.37 1.94
318 319 6.161381 TCTAAGTGGGATACTCGACAAAAAC 58.839 40.000 0.00 0.00 39.18 2.43
357 358 2.060383 TCCATCTGGGACTCGGCAG 61.060 63.158 0.00 0.00 42.15 4.85
377 378 2.582436 CCCACTATGGCGTCGGTT 59.418 61.111 0.00 0.00 35.79 4.44
436 438 0.320374 TAGGGACTTTGCCGAGTGTG 59.680 55.000 0.00 0.00 41.75 3.82
452 454 1.749634 AGTCGTTTCCCACTCGATAGG 59.250 52.381 0.00 0.00 36.08 2.57
456 458 2.144482 GAAAGTCGTTTCCCACTCGA 57.856 50.000 0.00 0.00 36.77 4.04
478 480 5.763088 GTTTTCCAAATGTCAGGAGAACTC 58.237 41.667 7.40 0.00 42.55 3.01
483 486 3.189287 CCGAGTTTTCCAAATGTCAGGAG 59.811 47.826 0.00 0.00 34.91 3.69
568 571 4.761739 GGTTTGATGACATGGAAGTCTCAA 59.238 41.667 0.00 0.00 39.27 3.02
863 1346 3.952508 ACGCCTGCATGTGGTGGA 61.953 61.111 19.40 0.00 39.24 4.02
977 1473 1.270305 TGCTTGGCTATGCGAGATACC 60.270 52.381 3.52 0.00 0.00 2.73
984 1480 0.309922 CCATCTTGCTTGGCTATGCG 59.690 55.000 3.52 0.00 0.00 4.73
1755 2305 0.605589 CGGAGAAGGAGAAGCAGTGT 59.394 55.000 0.00 0.00 0.00 3.55
1868 2418 0.531974 GGTGTTGTCGTTGAGGCTGA 60.532 55.000 0.00 0.00 0.00 4.26
2058 2608 4.742201 GAGGCGGCGAAGTCAGCA 62.742 66.667 12.98 0.00 36.08 4.41
2190 3190 5.306678 AGCAATTTACAGGGGAAAAATCACA 59.693 36.000 0.00 0.00 0.00 3.58
2191 3191 5.639082 CAGCAATTTACAGGGGAAAAATCAC 59.361 40.000 0.00 0.00 0.00 3.06
2192 3192 5.306678 ACAGCAATTTACAGGGGAAAAATCA 59.693 36.000 0.00 0.00 0.00 2.57
2226 3234 5.185056 AGAAGTTGAGAGAGAAAGGAGCTAC 59.815 44.000 0.00 0.00 0.00 3.58
2274 3283 6.959639 ACAAGAAGTTCACATGGTTGTAAT 57.040 33.333 5.50 0.00 33.76 1.89
2290 3300 1.121967 GTTCGTCGTGCGTACAAGAAG 59.878 52.381 4.09 0.00 40.02 2.85
2300 3310 2.088969 GCAATTTCAATGTTCGTCGTGC 59.911 45.455 0.00 0.00 0.00 5.34
2360 3388 6.729187 ACAAGACAACTTAGACAAAATGAGC 58.271 36.000 0.00 0.00 34.70 4.26
2515 3554 1.362717 CGCTATCCAATCGGTCCGT 59.637 57.895 11.88 0.00 0.00 4.69
2516 3555 1.372997 CCGCTATCCAATCGGTCCG 60.373 63.158 4.39 4.39 38.47 4.79
2523 3562 1.540363 CGGTGTTAGCCGCTATCCAAT 60.540 52.381 0.00 0.00 45.47 3.16
2567 3612 1.565759 TCCAAGCACCCTCTAATGCAT 59.434 47.619 0.00 0.00 44.59 3.96
2574 3619 1.276622 AACGTATCCAAGCACCCTCT 58.723 50.000 0.00 0.00 0.00 3.69
2575 3620 2.109425 AAACGTATCCAAGCACCCTC 57.891 50.000 0.00 0.00 0.00 4.30
2576 3621 2.579410 AAAACGTATCCAAGCACCCT 57.421 45.000 0.00 0.00 0.00 4.34
2577 3622 3.340928 ACTAAAACGTATCCAAGCACCC 58.659 45.455 0.00 0.00 0.00 4.61
2578 3623 3.373130 GGACTAAAACGTATCCAAGCACC 59.627 47.826 0.00 0.00 0.00 5.01
2579 3624 3.373130 GGGACTAAAACGTATCCAAGCAC 59.627 47.826 0.00 0.00 32.45 4.40
2580 3625 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
2581 3626 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
2582 3627 5.293569 GTCATGGGACTAAAACGTATCCAAG 59.706 44.000 0.00 0.00 40.99 3.61
2583 3628 5.180271 GTCATGGGACTAAAACGTATCCAA 58.820 41.667 0.00 0.00 40.99 3.53
2584 3629 4.761975 GTCATGGGACTAAAACGTATCCA 58.238 43.478 0.00 0.00 40.99 3.41
2599 3644 4.225267 AGTCCCACTACTTTTAGTCATGGG 59.775 45.833 16.70 16.70 46.94 4.00
2600 3645 5.422214 AGTCCCACTACTTTTAGTCATGG 57.578 43.478 0.00 0.00 36.31 3.66
2601 3646 8.718734 GTTTTAGTCCCACTACTTTTAGTCATG 58.281 37.037 0.00 0.00 36.31 3.07
2602 3647 8.657712 AGTTTTAGTCCCACTACTTTTAGTCAT 58.342 33.333 0.00 0.00 36.31 3.06
2603 3648 8.026396 AGTTTTAGTCCCACTACTTTTAGTCA 57.974 34.615 0.00 0.00 36.31 3.41
2604 3649 8.771766 CAAGTTTTAGTCCCACTACTTTTAGTC 58.228 37.037 0.00 0.00 36.31 2.59
2605 3650 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
2606 3651 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
2607 3652 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
2608 3653 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
2609 3654 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
2610 3655 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
2611 3656 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
2612 3657 4.630505 GCTAGCAAGTTTTAGTCCCACTAC 59.369 45.833 10.63 0.00 28.93 2.73
2613 3658 4.323257 GGCTAGCAAGTTTTAGTCCCACTA 60.323 45.833 18.24 0.00 0.00 2.74
2614 3659 3.559384 GGCTAGCAAGTTTTAGTCCCACT 60.559 47.826 18.24 0.00 0.00 4.00
2615 3660 2.747989 GGCTAGCAAGTTTTAGTCCCAC 59.252 50.000 18.24 0.00 0.00 4.61
2616 3661 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
2617 3662 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
2618 3663 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
2619 3664 3.685272 GGTGAGGCTAGCAAGTTTTAGTC 59.315 47.826 18.24 0.00 0.00 2.59
2620 3665 3.559384 GGGTGAGGCTAGCAAGTTTTAGT 60.559 47.826 18.24 0.00 0.00 2.24
2621 3666 3.010420 GGGTGAGGCTAGCAAGTTTTAG 58.990 50.000 18.24 0.00 0.00 1.85
2622 3667 2.373836 TGGGTGAGGCTAGCAAGTTTTA 59.626 45.455 18.24 0.00 0.00 1.52
2623 3668 1.144913 TGGGTGAGGCTAGCAAGTTTT 59.855 47.619 18.24 0.00 0.00 2.43
2624 3669 0.771127 TGGGTGAGGCTAGCAAGTTT 59.229 50.000 18.24 0.00 0.00 2.66
2625 3670 0.995024 ATGGGTGAGGCTAGCAAGTT 59.005 50.000 18.24 0.00 0.00 2.66
2626 3671 0.254178 CATGGGTGAGGCTAGCAAGT 59.746 55.000 18.24 0.00 0.00 3.16
2627 3672 0.543277 TCATGGGTGAGGCTAGCAAG 59.457 55.000 18.24 0.00 0.00 4.01
2628 3673 1.216064 ATCATGGGTGAGGCTAGCAA 58.784 50.000 18.24 0.00 37.87 3.91
2629 3674 1.134007 CAATCATGGGTGAGGCTAGCA 60.134 52.381 18.24 0.00 37.87 3.49
2630 3675 1.602311 CAATCATGGGTGAGGCTAGC 58.398 55.000 6.04 6.04 37.87 3.42
2631 3676 2.267174 CCAATCATGGGTGAGGCTAG 57.733 55.000 0.00 0.00 43.51 3.42
2642 3687 9.565090 TCTCTTTAGTATTTGGATCCAATCATG 57.435 33.333 27.53 12.28 35.70 3.07
2643 3688 9.566432 GTCTCTTTAGTATTTGGATCCAATCAT 57.434 33.333 27.53 20.35 35.70 2.45
2644 3689 8.772250 AGTCTCTTTAGTATTTGGATCCAATCA 58.228 33.333 27.53 14.58 35.70 2.57
2663 3708 9.507329 TGCTCAATAACTTGATTTTAGTCTCTT 57.493 29.630 0.00 0.00 40.52 2.85
2664 3709 9.678260 ATGCTCAATAACTTGATTTTAGTCTCT 57.322 29.630 0.00 0.00 40.52 3.10
2677 3722 9.866655 TGGAGGATAATAAATGCTCAATAACTT 57.133 29.630 8.48 0.00 38.10 2.66
2678 3723 9.866655 TTGGAGGATAATAAATGCTCAATAACT 57.133 29.630 8.48 0.00 38.10 2.24
2681 3726 9.077885 GGTTTGGAGGATAATAAATGCTCAATA 57.922 33.333 8.48 0.00 38.10 1.90
2682 3727 7.015584 GGGTTTGGAGGATAATAAATGCTCAAT 59.984 37.037 8.48 0.00 38.10 2.57
2683 3728 6.323739 GGGTTTGGAGGATAATAAATGCTCAA 59.676 38.462 8.48 0.00 38.10 3.02
2684 3729 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
2685 3730 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
2686 3731 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
2687 3732 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
2688 3733 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
2689 3734 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
2690 3735 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
2691 3736 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
2692 3737 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
2693 3738 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
2694 3739 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
2695 3740 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
2696 3741 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
2697 3742 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
2698 3743 0.704076 TGGATTGGAGGGTTTGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
2699 3744 1.635487 TCTGGATTGGAGGGTTTGGAG 59.365 52.381 0.00 0.00 0.00 3.86
2700 3745 1.753903 TCTGGATTGGAGGGTTTGGA 58.246 50.000 0.00 0.00 0.00 3.53
2701 3746 2.171003 GTTCTGGATTGGAGGGTTTGG 58.829 52.381 0.00 0.00 0.00 3.28
2702 3747 3.084786 GAGTTCTGGATTGGAGGGTTTG 58.915 50.000 0.00 0.00 0.00 2.93
2703 3748 2.290323 CGAGTTCTGGATTGGAGGGTTT 60.290 50.000 0.00 0.00 0.00 3.27
2704 3749 1.279271 CGAGTTCTGGATTGGAGGGTT 59.721 52.381 0.00 0.00 0.00 4.11
2705 3750 0.905357 CGAGTTCTGGATTGGAGGGT 59.095 55.000 0.00 0.00 0.00 4.34
2706 3751 0.462759 GCGAGTTCTGGATTGGAGGG 60.463 60.000 0.00 0.00 0.00 4.30
2707 3752 0.250234 TGCGAGTTCTGGATTGGAGG 59.750 55.000 0.00 0.00 0.00 4.30
2708 3753 1.938577 CATGCGAGTTCTGGATTGGAG 59.061 52.381 0.00 0.00 0.00 3.86
2709 3754 1.278985 ACATGCGAGTTCTGGATTGGA 59.721 47.619 0.00 0.00 0.00 3.53
2710 3755 1.399440 CACATGCGAGTTCTGGATTGG 59.601 52.381 0.00 0.00 0.00 3.16
2711 3756 2.079158 ACACATGCGAGTTCTGGATTG 58.921 47.619 0.00 0.00 0.00 2.67
2712 3757 2.479566 ACACATGCGAGTTCTGGATT 57.520 45.000 0.00 0.00 0.00 3.01
2713 3758 2.479566 AACACATGCGAGTTCTGGAT 57.520 45.000 0.00 0.00 0.00 3.41
2714 3759 3.394674 TTAACACATGCGAGTTCTGGA 57.605 42.857 0.00 0.00 0.00 3.86
2715 3760 3.120199 CCTTTAACACATGCGAGTTCTGG 60.120 47.826 0.00 0.00 0.00 3.86
2716 3761 3.745975 TCCTTTAACACATGCGAGTTCTG 59.254 43.478 0.00 0.00 0.00 3.02
2717 3762 3.997021 CTCCTTTAACACATGCGAGTTCT 59.003 43.478 0.00 0.00 0.00 3.01
2718 3763 3.994392 TCTCCTTTAACACATGCGAGTTC 59.006 43.478 0.00 0.00 0.00 3.01
2719 3764 3.997021 CTCTCCTTTAACACATGCGAGTT 59.003 43.478 0.00 0.00 0.00 3.01
2720 3765 3.589988 CTCTCCTTTAACACATGCGAGT 58.410 45.455 0.00 0.00 0.00 4.18
2721 3766 2.932614 CCTCTCCTTTAACACATGCGAG 59.067 50.000 0.00 0.00 0.00 5.03
2722 3767 2.565391 TCCTCTCCTTTAACACATGCGA 59.435 45.455 0.00 0.00 0.00 5.10
2723 3768 2.972625 TCCTCTCCTTTAACACATGCG 58.027 47.619 0.00 0.00 0.00 4.73
2724 3769 5.904362 AATTCCTCTCCTTTAACACATGC 57.096 39.130 0.00 0.00 0.00 4.06
2725 3770 9.793252 CATTTAATTCCTCTCCTTTAACACATG 57.207 33.333 0.00 0.00 0.00 3.21
2726 3771 9.753674 TCATTTAATTCCTCTCCTTTAACACAT 57.246 29.630 0.00 0.00 0.00 3.21
2727 3772 9.231297 CTCATTTAATTCCTCTCCTTTAACACA 57.769 33.333 0.00 0.00 0.00 3.72
2728 3773 9.449719 TCTCATTTAATTCCTCTCCTTTAACAC 57.550 33.333 0.00 0.00 0.00 3.32
2733 3778 8.830741 TCTCTTCTCATTTAATTCCTCTCCTTT 58.169 33.333 0.00 0.00 0.00 3.11
2734 3779 8.386012 TCTCTTCTCATTTAATTCCTCTCCTT 57.614 34.615 0.00 0.00 0.00 3.36
2735 3780 7.843760 TCTCTCTTCTCATTTAATTCCTCTCCT 59.156 37.037 0.00 0.00 0.00 3.69
2736 3781 8.017418 TCTCTCTTCTCATTTAATTCCTCTCC 57.983 38.462 0.00 0.00 0.00 3.71
2737 3782 8.143835 CCTCTCTCTTCTCATTTAATTCCTCTC 58.856 40.741 0.00 0.00 0.00 3.20
2738 3783 7.071071 CCCTCTCTCTTCTCATTTAATTCCTCT 59.929 40.741 0.00 0.00 0.00 3.69
2739 3784 7.216494 CCCTCTCTCTTCTCATTTAATTCCTC 58.784 42.308 0.00 0.00 0.00 3.71
2740 3785 6.409120 GCCCTCTCTCTTCTCATTTAATTCCT 60.409 42.308 0.00 0.00 0.00 3.36
2741 3786 5.762711 GCCCTCTCTCTTCTCATTTAATTCC 59.237 44.000 0.00 0.00 0.00 3.01
2742 3787 6.591001 AGCCCTCTCTCTTCTCATTTAATTC 58.409 40.000 0.00 0.00 0.00 2.17
2743 3788 6.573712 AGCCCTCTCTCTTCTCATTTAATT 57.426 37.500 0.00 0.00 0.00 1.40
2744 3789 7.682787 TTAGCCCTCTCTCTTCTCATTTAAT 57.317 36.000 0.00 0.00 0.00 1.40
2745 3790 7.682787 ATTAGCCCTCTCTCTTCTCATTTAA 57.317 36.000 0.00 0.00 0.00 1.52
2746 3791 7.785028 TGTATTAGCCCTCTCTCTTCTCATTTA 59.215 37.037 0.00 0.00 0.00 1.40
2747 3792 6.613271 TGTATTAGCCCTCTCTCTTCTCATTT 59.387 38.462 0.00 0.00 0.00 2.32
2748 3793 6.139671 TGTATTAGCCCTCTCTCTTCTCATT 58.860 40.000 0.00 0.00 0.00 2.57
2749 3794 5.710646 TGTATTAGCCCTCTCTCTTCTCAT 58.289 41.667 0.00 0.00 0.00 2.90
2750 3795 5.130705 TGTATTAGCCCTCTCTCTTCTCA 57.869 43.478 0.00 0.00 0.00 3.27
2751 3796 7.954666 ATATGTATTAGCCCTCTCTCTTCTC 57.045 40.000 0.00 0.00 0.00 2.87
2752 3797 8.734593 AAATATGTATTAGCCCTCTCTCTTCT 57.265 34.615 0.00 0.00 0.00 2.85
2755 3800 9.608718 ACTAAAATATGTATTAGCCCTCTCTCT 57.391 33.333 0.00 0.00 33.39 3.10
2759 3804 9.617053 ACCTACTAAAATATGTATTAGCCCTCT 57.383 33.333 0.00 0.00 33.39 3.69
2797 3842 8.577296 GGACTAGTCTTGAGGCTAAAAATTTTT 58.423 33.333 21.88 19.44 0.00 1.94
2798 3843 7.945109 AGGACTAGTCTTGAGGCTAAAAATTTT 59.055 33.333 21.88 0.00 0.00 1.82
2799 3844 7.462590 AGGACTAGTCTTGAGGCTAAAAATTT 58.537 34.615 21.88 0.00 0.00 1.82
2800 3845 7.021998 AGGACTAGTCTTGAGGCTAAAAATT 57.978 36.000 21.88 0.00 0.00 1.82
2801 3846 6.628644 AGGACTAGTCTTGAGGCTAAAAAT 57.371 37.500 21.88 0.00 0.00 1.82
2802 3847 6.724905 ACTAGGACTAGTCTTGAGGCTAAAAA 59.275 38.462 21.88 0.00 42.30 1.94
2803 3848 6.254522 ACTAGGACTAGTCTTGAGGCTAAAA 58.745 40.000 21.88 0.00 42.30 1.52
2804 3849 5.828871 ACTAGGACTAGTCTTGAGGCTAAA 58.171 41.667 21.88 0.00 42.30 1.85
2805 3850 5.453866 ACTAGGACTAGTCTTGAGGCTAA 57.546 43.478 21.88 0.00 42.30 3.09
2817 3862 6.990349 CCTGACTAAAGAGAGACTAGGACTAG 59.010 46.154 4.86 4.86 39.04 2.57
2818 3863 6.126710 CCCTGACTAAAGAGAGACTAGGACTA 60.127 46.154 0.00 0.00 0.00 2.59
2819 3864 5.339695 CCCTGACTAAAGAGAGACTAGGACT 60.340 48.000 0.00 0.00 0.00 3.85
2820 3865 4.885325 CCCTGACTAAAGAGAGACTAGGAC 59.115 50.000 0.00 0.00 0.00 3.85
2821 3866 4.079672 CCCCTGACTAAAGAGAGACTAGGA 60.080 50.000 0.00 0.00 0.00 2.94
2822 3867 4.211920 CCCCTGACTAAAGAGAGACTAGG 58.788 52.174 0.00 0.00 0.00 3.02
2823 3868 4.642885 CACCCCTGACTAAAGAGAGACTAG 59.357 50.000 0.00 0.00 0.00 2.57
2824 3869 4.601084 CACCCCTGACTAAAGAGAGACTA 58.399 47.826 0.00 0.00 0.00 2.59
2825 3870 3.436243 CACCCCTGACTAAAGAGAGACT 58.564 50.000 0.00 0.00 0.00 3.24
2826 3871 2.093921 GCACCCCTGACTAAAGAGAGAC 60.094 54.545 0.00 0.00 0.00 3.36
2827 3872 2.180276 GCACCCCTGACTAAAGAGAGA 58.820 52.381 0.00 0.00 0.00 3.10
2828 3873 2.183679 AGCACCCCTGACTAAAGAGAG 58.816 52.381 0.00 0.00 0.00 3.20
2829 3874 2.303022 CAAGCACCCCTGACTAAAGAGA 59.697 50.000 0.00 0.00 0.00 3.10
2830 3875 2.616510 CCAAGCACCCCTGACTAAAGAG 60.617 54.545 0.00 0.00 0.00 2.85
2831 3876 1.351017 CCAAGCACCCCTGACTAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
2832 3877 1.351017 TCCAAGCACCCCTGACTAAAG 59.649 52.381 0.00 0.00 0.00 1.85
2833 3878 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
2834 3879 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
2835 3880 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
2836 3881 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
2837 3882 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
2838 3883 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
2839 3884 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
2840 3885 1.547901 GCTAAAGTTCCAAGCACCCCT 60.548 52.381 0.00 0.00 36.26 4.79
2841 3886 0.888619 GCTAAAGTTCCAAGCACCCC 59.111 55.000 0.00 0.00 36.26 4.95
2842 3887 0.888619 GGCTAAAGTTCCAAGCACCC 59.111 55.000 7.02 0.00 38.01 4.61
2843 3888 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
2844 3889 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
2845 3890 4.634012 TTAGAGGCTAAAGTTCCAAGCA 57.366 40.909 0.00 0.00 38.01 3.91
2846 3891 5.959618 TTTTAGAGGCTAAAGTTCCAAGC 57.040 39.130 0.00 0.00 35.47 4.01
2886 3931 8.758829 GGTGATTGGATTTAAGGGACTATTTTT 58.241 33.333 0.00 0.00 38.49 1.94
2887 3932 7.344612 GGGTGATTGGATTTAAGGGACTATTTT 59.655 37.037 0.00 0.00 38.49 1.82
2888 3933 6.839134 GGGTGATTGGATTTAAGGGACTATTT 59.161 38.462 0.00 0.00 38.49 1.40
2889 3934 6.162241 AGGGTGATTGGATTTAAGGGACTATT 59.838 38.462 0.00 0.00 38.49 1.73
2890 3935 5.676811 AGGGTGATTGGATTTAAGGGACTAT 59.323 40.000 0.00 0.00 38.49 2.12
2891 3936 5.043762 AGGGTGATTGGATTTAAGGGACTA 58.956 41.667 0.00 0.00 38.49 2.59
2893 3938 4.079730 AGAGGGTGATTGGATTTAAGGGAC 60.080 45.833 0.00 0.00 0.00 4.46
2894 3939 4.119155 AGAGGGTGATTGGATTTAAGGGA 58.881 43.478 0.00 0.00 0.00 4.20
2895 3940 4.526438 AGAGGGTGATTGGATTTAAGGG 57.474 45.455 0.00 0.00 0.00 3.95
2896 3941 6.663734 ACTAAGAGGGTGATTGGATTTAAGG 58.336 40.000 0.00 0.00 0.00 2.69
2897 3942 7.569240 AGACTAAGAGGGTGATTGGATTTAAG 58.431 38.462 0.00 0.00 0.00 1.85
2898 3943 7.403231 AGAGACTAAGAGGGTGATTGGATTTAA 59.597 37.037 0.00 0.00 0.00 1.52
2899 3944 6.903534 AGAGACTAAGAGGGTGATTGGATTTA 59.096 38.462 0.00 0.00 0.00 1.40
2900 3945 5.728741 AGAGACTAAGAGGGTGATTGGATTT 59.271 40.000 0.00 0.00 0.00 2.17
2901 3946 5.284582 AGAGACTAAGAGGGTGATTGGATT 58.715 41.667 0.00 0.00 0.00 3.01
2902 3947 4.889780 AGAGACTAAGAGGGTGATTGGAT 58.110 43.478 0.00 0.00 0.00 3.41
2903 3948 4.338795 AGAGACTAAGAGGGTGATTGGA 57.661 45.455 0.00 0.00 0.00 3.53
2904 3949 4.223923 ACAAGAGACTAAGAGGGTGATTGG 59.776 45.833 0.00 0.00 0.00 3.16
2905 3950 5.413309 ACAAGAGACTAAGAGGGTGATTG 57.587 43.478 0.00 0.00 0.00 2.67
2906 3951 6.441088 AAACAAGAGACTAAGAGGGTGATT 57.559 37.500 0.00 0.00 0.00 2.57
2907 3952 6.441088 AAAACAAGAGACTAAGAGGGTGAT 57.559 37.500 0.00 0.00 0.00 3.06
2908 3953 5.888982 AAAACAAGAGACTAAGAGGGTGA 57.111 39.130 0.00 0.00 0.00 4.02
2909 3954 6.651225 CCTAAAAACAAGAGACTAAGAGGGTG 59.349 42.308 0.00 0.00 0.00 4.61
2910 3955 6.557633 TCCTAAAAACAAGAGACTAAGAGGGT 59.442 38.462 0.00 0.00 0.00 4.34
2911 3956 7.005709 TCCTAAAAACAAGAGACTAAGAGGG 57.994 40.000 0.00 0.00 0.00 4.30
2912 3957 8.151596 ACTTCCTAAAAACAAGAGACTAAGAGG 58.848 37.037 0.00 0.00 0.00 3.69
2913 3958 8.983724 CACTTCCTAAAAACAAGAGACTAAGAG 58.016 37.037 0.00 0.00 0.00 2.85
2914 3959 8.483758 ACACTTCCTAAAAACAAGAGACTAAGA 58.516 33.333 0.00 0.00 0.00 2.10
2915 3960 8.664211 ACACTTCCTAAAAACAAGAGACTAAG 57.336 34.615 0.00 0.00 0.00 2.18
2917 3962 9.924650 GATACACTTCCTAAAAACAAGAGACTA 57.075 33.333 0.00 0.00 0.00 2.59
2955 4000 3.058983 CACTTGCTTTTCACTGATACGCA 60.059 43.478 0.00 0.00 0.00 5.24
2956 4001 3.482786 CACTTGCTTTTCACTGATACGC 58.517 45.455 0.00 0.00 0.00 4.42
2957 4002 3.058983 TGCACTTGCTTTTCACTGATACG 60.059 43.478 2.33 0.00 42.66 3.06
2985 4031 3.191371 ACCTTGAATCCATTGTTCTTCGC 59.809 43.478 0.00 0.00 0.00 4.70
3001 4047 8.690884 TGTGTGAAAAATGAATTTCTACCTTGA 58.309 29.630 0.00 0.00 39.51 3.02
3057 4103 7.095774 ACTGTATTCTTCACATGTACGAACAAC 60.096 37.037 0.00 5.04 39.58 3.32
3112 4160 4.080695 TCCAAGCTGCTCATTGACTTCTAT 60.081 41.667 1.00 0.00 0.00 1.98
3119 4167 0.037160 TGCTCCAAGCTGCTCATTGA 59.963 50.000 1.00 0.00 42.97 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.