Multiple sequence alignment - TraesCS1B01G330500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G330500 chr1B 100.000 3158 0 0 1 3158 556250423 556253580 0.000000e+00 5832.0
1 TraesCS1B01G330500 chr1B 93.072 1963 110 12 1199 3158 556834311 556836250 0.000000e+00 2848.0
2 TraesCS1B01G330500 chr1B 93.072 1963 110 12 1199 3158 556862732 556864671 0.000000e+00 2848.0
3 TraesCS1B01G330500 chr1B 93.688 1917 91 10 701 2590 556662815 556664728 0.000000e+00 2843.0
4 TraesCS1B01G330500 chr1B 94.118 1870 80 19 668 2531 556297010 556298855 0.000000e+00 2817.0
5 TraesCS1B01G330500 chr1B 95.189 1642 54 12 721 2343 556264538 556266173 0.000000e+00 2571.0
6 TraesCS1B01G330500 chr1B 90.166 1688 106 23 669 2319 556064652 556062988 0.000000e+00 2143.0
7 TraesCS1B01G330500 chr1B 99.804 510 1 0 1 510 23233795 23234304 0.000000e+00 937.0
8 TraesCS1B01G330500 chr1B 99.608 510 2 0 1 510 31165751 31166260 0.000000e+00 931.0
9 TraesCS1B01G330500 chr1B 99.608 510 2 0 1 510 660698211 660697702 0.000000e+00 931.0
10 TraesCS1B01G330500 chr1B 88.750 560 43 7 2603 3158 556666532 556667075 0.000000e+00 667.0
11 TraesCS1B01G330500 chr1B 97.500 80 1 1 508 587 641562934 641563012 5.490000e-28 135.0
12 TraesCS1B01G330500 chr1D 92.644 2175 112 20 998 3158 412897765 412899905 0.000000e+00 3086.0
13 TraesCS1B01G330500 chr1D 92.531 2169 119 17 998 3158 412684071 412686204 0.000000e+00 3068.0
14 TraesCS1B01G330500 chr1D 89.875 2084 128 35 668 2686 412641852 412643917 0.000000e+00 2603.0
15 TraesCS1B01G330500 chr1D 89.446 2094 127 36 668 2686 412745830 412747904 0.000000e+00 2556.0
16 TraesCS1B01G330500 chr1D 90.119 2024 119 33 668 2627 412762993 412764999 0.000000e+00 2555.0
17 TraesCS1B01G330500 chr1D 93.329 1604 67 13 701 2272 412660163 412661758 0.000000e+00 2333.0
18 TraesCS1B01G330500 chr1D 90.549 328 29 2 2832 3158 412816146 412816472 1.740000e-117 433.0
19 TraesCS1B01G330500 chr1A 90.063 2053 142 26 661 2686 509777109 509775092 0.000000e+00 2604.0
20 TraesCS1B01G330500 chr1A 89.690 2066 145 36 661 2686 509703880 509701843 0.000000e+00 2573.0
21 TraesCS1B01G330500 chr1A 91.872 1784 91 19 701 2451 509849739 509847977 0.000000e+00 2442.0
22 TraesCS1B01G330500 chr1A 92.526 1659 79 17 701 2331 509720214 509718573 0.000000e+00 2335.0
23 TraesCS1B01G330500 chr1A 92.526 1659 79 17 701 2331 509793594 509791953 0.000000e+00 2335.0
24 TraesCS1B01G330500 chr1A 93.210 162 9 2 2989 3149 509540814 509540654 1.460000e-58 237.0
25 TraesCS1B01G330500 chr1A 91.195 159 12 2 2989 3146 510112703 510112860 6.860000e-52 215.0
26 TraesCS1B01G330500 chr1A 96.386 83 3 0 508 590 431979111 431979029 1.530000e-28 137.0
27 TraesCS1B01G330500 chr4B 90.457 1750 116 25 701 2423 633465773 633467498 0.000000e+00 2259.0
28 TraesCS1B01G330500 chr4B 97.500 80 1 1 508 587 621092157 621092235 5.490000e-28 135.0
29 TraesCS1B01G330500 chr4B 95.238 63 3 0 585 647 517354640 517354702 2.000000e-17 100.0
30 TraesCS1B01G330500 chr6B 99.804 510 1 0 1 510 687893 687384 0.000000e+00 937.0
31 TraesCS1B01G330500 chr6B 97.500 80 1 1 508 587 351612000 351612078 5.490000e-28 135.0
32 TraesCS1B01G330500 chrUn 99.608 510 2 0 1 510 425246049 425245540 0.000000e+00 931.0
33 TraesCS1B01G330500 chrUn 99.608 510 2 0 1 510 436159954 436160463 0.000000e+00 931.0
34 TraesCS1B01G330500 chrUn 99.608 510 2 0 1 510 456680578 456680069 0.000000e+00 931.0
35 TraesCS1B01G330500 chrUn 98.684 76 1 0 508 583 288080140 288080215 5.490000e-28 135.0
36 TraesCS1B01G330500 chrUn 98.684 76 1 0 508 583 460238513 460238588 5.490000e-28 135.0
37 TraesCS1B01G330500 chrUn 80.000 90 16 2 1370 1458 109057001 109057089 7.310000e-07 65.8
38 TraesCS1B01G330500 chr7B 99.608 510 2 0 1 510 66205864 66206373 0.000000e+00 931.0
39 TraesCS1B01G330500 chr4A 99.608 510 2 0 1 510 556180510 556180001 0.000000e+00 931.0
40 TraesCS1B01G330500 chr2D 84.564 298 42 3 2685 2979 154185292 154184996 3.080000e-75 292.0
41 TraesCS1B01G330500 chr6D 83.946 299 41 6 2685 2979 320203692 320203987 2.400000e-71 279.0
42 TraesCS1B01G330500 chr6D 97.619 42 1 0 1420 1461 72405985 72406026 4.370000e-09 73.1
43 TraesCS1B01G330500 chr5D 82.895 304 44 7 2682 2979 545768118 545768419 1.870000e-67 267.0
44 TraesCS1B01G330500 chr6A 97.531 81 1 1 508 588 12629658 12629579 1.530000e-28 137.0
45 TraesCS1B01G330500 chr2B 97.531 81 1 1 508 588 636915026 636914947 1.530000e-28 137.0
46 TraesCS1B01G330500 chr5B 96.386 83 2 1 508 590 684200099 684200018 5.490000e-28 135.0
47 TraesCS1B01G330500 chr5B 94.203 69 3 1 585 652 429828673 429828605 1.550000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G330500 chr1B 556250423 556253580 3157 False 5832 5832 100.000 1 3158 1 chr1B.!!$F3 3157
1 TraesCS1B01G330500 chr1B 556834311 556836250 1939 False 2848 2848 93.072 1199 3158 1 chr1B.!!$F6 1959
2 TraesCS1B01G330500 chr1B 556862732 556864671 1939 False 2848 2848 93.072 1199 3158 1 chr1B.!!$F7 1959
3 TraesCS1B01G330500 chr1B 556297010 556298855 1845 False 2817 2817 94.118 668 2531 1 chr1B.!!$F5 1863
4 TraesCS1B01G330500 chr1B 556264538 556266173 1635 False 2571 2571 95.189 721 2343 1 chr1B.!!$F4 1622
5 TraesCS1B01G330500 chr1B 556062988 556064652 1664 True 2143 2143 90.166 669 2319 1 chr1B.!!$R1 1650
6 TraesCS1B01G330500 chr1B 556662815 556667075 4260 False 1755 2843 91.219 701 3158 2 chr1B.!!$F9 2457
7 TraesCS1B01G330500 chr1B 23233795 23234304 509 False 937 937 99.804 1 510 1 chr1B.!!$F1 509
8 TraesCS1B01G330500 chr1B 31165751 31166260 509 False 931 931 99.608 1 510 1 chr1B.!!$F2 509
9 TraesCS1B01G330500 chr1B 660697702 660698211 509 True 931 931 99.608 1 510 1 chr1B.!!$R2 509
10 TraesCS1B01G330500 chr1D 412897765 412899905 2140 False 3086 3086 92.644 998 3158 1 chr1D.!!$F7 2160
11 TraesCS1B01G330500 chr1D 412684071 412686204 2133 False 3068 3068 92.531 998 3158 1 chr1D.!!$F3 2160
12 TraesCS1B01G330500 chr1D 412641852 412643917 2065 False 2603 2603 89.875 668 2686 1 chr1D.!!$F1 2018
13 TraesCS1B01G330500 chr1D 412745830 412747904 2074 False 2556 2556 89.446 668 2686 1 chr1D.!!$F4 2018
14 TraesCS1B01G330500 chr1D 412762993 412764999 2006 False 2555 2555 90.119 668 2627 1 chr1D.!!$F5 1959
15 TraesCS1B01G330500 chr1D 412660163 412661758 1595 False 2333 2333 93.329 701 2272 1 chr1D.!!$F2 1571
16 TraesCS1B01G330500 chr1A 509775092 509777109 2017 True 2604 2604 90.063 661 2686 1 chr1A.!!$R5 2025
17 TraesCS1B01G330500 chr1A 509701843 509703880 2037 True 2573 2573 89.690 661 2686 1 chr1A.!!$R3 2025
18 TraesCS1B01G330500 chr1A 509847977 509849739 1762 True 2442 2442 91.872 701 2451 1 chr1A.!!$R7 1750
19 TraesCS1B01G330500 chr1A 509718573 509720214 1641 True 2335 2335 92.526 701 2331 1 chr1A.!!$R4 1630
20 TraesCS1B01G330500 chr1A 509791953 509793594 1641 True 2335 2335 92.526 701 2331 1 chr1A.!!$R6 1630
21 TraesCS1B01G330500 chr4B 633465773 633467498 1725 False 2259 2259 90.457 701 2423 1 chr4B.!!$F3 1722
22 TraesCS1B01G330500 chr6B 687384 687893 509 True 937 937 99.804 1 510 1 chr6B.!!$R1 509
23 TraesCS1B01G330500 chrUn 425245540 425246049 509 True 931 931 99.608 1 510 1 chrUn.!!$R1 509
24 TraesCS1B01G330500 chrUn 436159954 436160463 509 False 931 931 99.608 1 510 1 chrUn.!!$F3 509
25 TraesCS1B01G330500 chrUn 456680069 456680578 509 True 931 931 99.608 1 510 1 chrUn.!!$R2 509
26 TraesCS1B01G330500 chr7B 66205864 66206373 509 False 931 931 99.608 1 510 1 chr7B.!!$F1 509
27 TraesCS1B01G330500 chr4A 556180001 556180510 509 True 931 931 99.608 1 510 1 chr4A.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.027586 GAATTTCCGGAATGCGTCGG 59.972 55.0 19.62 0.0 46.89 4.79 F
1397 1491 0.038526 GCTTCGGGTTTGTCGAGAGA 60.039 55.0 0.00 0.0 37.93 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1869 0.108424 CGGAGAAGGAGAAGCAGTGG 60.108 60.000 0.0 0.0 0.00 4.0 R
2688 4655 1.404748 GACTTACACCTAGACGGAGGC 59.595 57.143 0.0 0.0 40.65 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 201 5.750524 TCATATTGTCCTTTGAAATCCGGA 58.249 37.500 6.61 6.61 0.00 5.14
201 202 5.822519 TCATATTGTCCTTTGAAATCCGGAG 59.177 40.000 11.34 0.00 0.00 4.63
202 203 3.502123 TTGTCCTTTGAAATCCGGAGT 57.498 42.857 11.34 3.58 0.00 3.85
203 204 3.053831 TGTCCTTTGAAATCCGGAGTC 57.946 47.619 11.34 10.76 0.00 3.36
204 205 2.637872 TGTCCTTTGAAATCCGGAGTCT 59.362 45.455 11.34 0.00 0.00 3.24
205 206 3.072476 TGTCCTTTGAAATCCGGAGTCTT 59.928 43.478 11.34 2.72 0.00 3.01
206 207 3.437049 GTCCTTTGAAATCCGGAGTCTTG 59.563 47.826 11.34 4.69 0.00 3.02
207 208 3.072476 TCCTTTGAAATCCGGAGTCTTGT 59.928 43.478 11.34 0.00 0.00 3.16
208 209 3.821033 CCTTTGAAATCCGGAGTCTTGTT 59.179 43.478 11.34 0.00 0.00 2.83
209 210 4.083271 CCTTTGAAATCCGGAGTCTTGTTC 60.083 45.833 11.34 1.36 0.00 3.18
210 211 4.351874 TTGAAATCCGGAGTCTTGTTCT 57.648 40.909 11.34 0.00 0.00 3.01
211 212 3.664107 TGAAATCCGGAGTCTTGTTCTG 58.336 45.455 11.34 0.00 0.00 3.02
212 213 2.100605 AATCCGGAGTCTTGTTCTGC 57.899 50.000 11.34 0.00 0.00 4.26
213 214 1.270907 ATCCGGAGTCTTGTTCTGCT 58.729 50.000 11.34 0.00 0.00 4.24
214 215 1.048601 TCCGGAGTCTTGTTCTGCTT 58.951 50.000 0.00 0.00 0.00 3.91
215 216 1.151668 CCGGAGTCTTGTTCTGCTTG 58.848 55.000 0.00 0.00 0.00 4.01
216 217 1.270305 CCGGAGTCTTGTTCTGCTTGA 60.270 52.381 0.00 0.00 0.00 3.02
217 218 1.795286 CGGAGTCTTGTTCTGCTTGAC 59.205 52.381 0.00 0.00 0.00 3.18
218 219 2.803133 CGGAGTCTTGTTCTGCTTGACA 60.803 50.000 0.00 0.00 0.00 3.58
219 220 3.206150 GGAGTCTTGTTCTGCTTGACAA 58.794 45.455 0.00 0.00 0.00 3.18
220 221 3.627577 GGAGTCTTGTTCTGCTTGACAAA 59.372 43.478 0.00 0.00 0.00 2.83
221 222 4.260948 GGAGTCTTGTTCTGCTTGACAAAG 60.261 45.833 0.00 0.00 36.41 2.77
222 223 4.265073 AGTCTTGTTCTGCTTGACAAAGT 58.735 39.130 0.00 0.00 35.69 2.66
223 224 4.333926 AGTCTTGTTCTGCTTGACAAAGTC 59.666 41.667 0.00 0.00 35.69 3.01
224 225 4.094887 GTCTTGTTCTGCTTGACAAAGTCA 59.905 41.667 0.00 0.00 41.09 3.41
225 226 4.883585 TCTTGTTCTGCTTGACAAAGTCAT 59.116 37.500 0.12 0.00 42.40 3.06
226 227 4.556942 TGTTCTGCTTGACAAAGTCATG 57.443 40.909 0.12 4.84 42.40 3.07
227 228 3.316029 TGTTCTGCTTGACAAAGTCATGG 59.684 43.478 12.89 5.95 42.40 3.66
228 229 2.507484 TCTGCTTGACAAAGTCATGGG 58.493 47.619 12.89 4.00 42.40 4.00
229 230 0.961019 TGCTTGACAAAGTCATGGGC 59.039 50.000 12.89 11.80 42.40 5.36
230 231 1.251251 GCTTGACAAAGTCATGGGCT 58.749 50.000 12.89 0.00 42.40 5.19
231 232 2.224744 TGCTTGACAAAGTCATGGGCTA 60.225 45.455 12.89 0.00 42.40 3.93
232 233 2.421424 GCTTGACAAAGTCATGGGCTAG 59.579 50.000 12.89 3.44 42.40 3.42
233 234 3.869912 GCTTGACAAAGTCATGGGCTAGA 60.870 47.826 12.89 0.00 42.40 2.43
234 235 4.521146 CTTGACAAAGTCATGGGCTAGAT 58.479 43.478 0.12 0.00 42.40 1.98
235 236 4.574674 TGACAAAGTCATGGGCTAGATT 57.425 40.909 0.00 0.00 37.67 2.40
236 237 4.922206 TGACAAAGTCATGGGCTAGATTT 58.078 39.130 0.00 0.00 37.67 2.17
237 238 5.324409 TGACAAAGTCATGGGCTAGATTTT 58.676 37.500 0.00 0.00 37.67 1.82
238 239 5.183713 TGACAAAGTCATGGGCTAGATTTTG 59.816 40.000 15.07 15.07 43.11 2.44
239 240 4.082026 ACAAAGTCATGGGCTAGATTTTGC 60.082 41.667 15.93 0.00 41.99 3.68
240 241 3.659183 AGTCATGGGCTAGATTTTGCT 57.341 42.857 0.00 0.00 0.00 3.91
241 242 3.973425 AGTCATGGGCTAGATTTTGCTT 58.027 40.909 0.00 0.00 0.00 3.91
242 243 3.698040 AGTCATGGGCTAGATTTTGCTTG 59.302 43.478 0.00 0.00 0.00 4.01
243 244 3.696051 GTCATGGGCTAGATTTTGCTTGA 59.304 43.478 0.00 0.00 0.00 3.02
244 245 4.158394 GTCATGGGCTAGATTTTGCTTGAA 59.842 41.667 0.00 0.00 0.00 2.69
245 246 4.957954 TCATGGGCTAGATTTTGCTTGAAT 59.042 37.500 0.00 0.00 0.00 2.57
246 247 5.422970 TCATGGGCTAGATTTTGCTTGAATT 59.577 36.000 0.00 0.00 0.00 2.17
247 248 5.743636 TGGGCTAGATTTTGCTTGAATTT 57.256 34.783 0.00 0.00 0.00 1.82
248 249 5.723295 TGGGCTAGATTTTGCTTGAATTTC 58.277 37.500 0.00 0.00 0.00 2.17
249 250 5.111989 GGGCTAGATTTTGCTTGAATTTCC 58.888 41.667 0.00 0.00 0.00 3.13
250 251 4.800471 GGCTAGATTTTGCTTGAATTTCCG 59.200 41.667 0.00 0.00 0.00 4.30
251 252 4.800471 GCTAGATTTTGCTTGAATTTCCGG 59.200 41.667 0.00 0.00 0.00 5.14
252 253 5.393027 GCTAGATTTTGCTTGAATTTCCGGA 60.393 40.000 0.00 0.00 0.00 5.14
253 254 5.467035 AGATTTTGCTTGAATTTCCGGAA 57.533 34.783 14.35 14.35 0.00 4.30
254 255 6.041423 AGATTTTGCTTGAATTTCCGGAAT 57.959 33.333 19.62 3.25 0.00 3.01
255 256 5.870978 AGATTTTGCTTGAATTTCCGGAATG 59.129 36.000 19.62 5.68 0.00 2.67
256 257 2.652941 TGCTTGAATTTCCGGAATGC 57.347 45.000 19.62 15.06 0.00 3.56
257 258 1.135431 TGCTTGAATTTCCGGAATGCG 60.135 47.619 19.62 5.00 0.00 4.73
258 259 1.135402 GCTTGAATTTCCGGAATGCGT 60.135 47.619 19.62 3.26 0.00 5.24
259 260 2.785679 CTTGAATTTCCGGAATGCGTC 58.214 47.619 19.62 13.03 0.00 5.19
260 261 0.724549 TGAATTTCCGGAATGCGTCG 59.275 50.000 19.62 0.00 0.00 5.12
261 262 0.027586 GAATTTCCGGAATGCGTCGG 59.972 55.000 19.62 0.00 46.89 4.79
262 263 1.988834 AATTTCCGGAATGCGTCGGC 61.989 55.000 19.62 0.00 45.31 5.54
266 267 3.640000 CGGAATGCGTCGGCCATC 61.640 66.667 2.24 0.00 38.85 3.51
267 268 2.203070 GGAATGCGTCGGCCATCT 60.203 61.111 2.24 0.00 38.85 2.90
268 269 1.819632 GGAATGCGTCGGCCATCTT 60.820 57.895 2.24 0.00 38.85 2.40
269 270 0.531974 GGAATGCGTCGGCCATCTTA 60.532 55.000 2.24 0.00 38.85 2.10
270 271 1.512926 GAATGCGTCGGCCATCTTAT 58.487 50.000 2.24 0.00 38.85 1.73
271 272 1.195448 GAATGCGTCGGCCATCTTATG 59.805 52.381 2.24 0.00 38.85 1.90
272 273 0.392706 ATGCGTCGGCCATCTTATGA 59.607 50.000 2.24 0.00 38.85 2.15
273 274 0.176910 TGCGTCGGCCATCTTATGAA 59.823 50.000 2.24 0.00 38.85 2.57
274 275 0.861837 GCGTCGGCCATCTTATGAAG 59.138 55.000 2.24 0.00 0.00 3.02
275 276 1.538204 GCGTCGGCCATCTTATGAAGA 60.538 52.381 2.24 0.00 42.69 2.87
276 277 2.398498 CGTCGGCCATCTTATGAAGAG 58.602 52.381 2.24 0.00 41.61 2.85
277 278 2.139118 GTCGGCCATCTTATGAAGAGC 58.861 52.381 2.24 0.00 41.61 4.09
278 279 1.143305 CGGCCATCTTATGAAGAGCG 58.857 55.000 2.24 0.00 41.61 5.03
279 280 1.269778 CGGCCATCTTATGAAGAGCGA 60.270 52.381 2.24 0.00 41.61 4.93
280 281 2.803133 CGGCCATCTTATGAAGAGCGAA 60.803 50.000 2.24 0.00 41.61 4.70
281 282 2.545946 GGCCATCTTATGAAGAGCGAAC 59.454 50.000 0.00 0.00 41.61 3.95
282 283 3.462021 GCCATCTTATGAAGAGCGAACT 58.538 45.455 0.00 0.00 41.61 3.01
283 284 3.247173 GCCATCTTATGAAGAGCGAACTG 59.753 47.826 0.00 0.00 41.61 3.16
284 285 4.437239 CCATCTTATGAAGAGCGAACTGT 58.563 43.478 0.00 0.00 41.61 3.55
285 286 4.872691 CCATCTTATGAAGAGCGAACTGTT 59.127 41.667 0.00 0.00 41.61 3.16
286 287 5.352569 CCATCTTATGAAGAGCGAACTGTTT 59.647 40.000 0.00 0.00 41.61 2.83
287 288 5.845985 TCTTATGAAGAGCGAACTGTTTG 57.154 39.130 3.32 3.32 32.71 2.93
288 289 5.538118 TCTTATGAAGAGCGAACTGTTTGA 58.462 37.500 11.94 0.00 32.71 2.69
289 290 5.405571 TCTTATGAAGAGCGAACTGTTTGAC 59.594 40.000 11.94 4.91 32.71 3.18
290 291 3.179443 TGAAGAGCGAACTGTTTGACT 57.821 42.857 11.94 7.98 27.58 3.41
291 292 4.316205 TGAAGAGCGAACTGTTTGACTA 57.684 40.909 11.94 0.00 27.58 2.59
292 293 4.299155 TGAAGAGCGAACTGTTTGACTAG 58.701 43.478 11.94 0.00 27.58 2.57
293 294 2.678324 AGAGCGAACTGTTTGACTAGC 58.322 47.619 11.94 3.55 0.00 3.42
294 295 1.727335 GAGCGAACTGTTTGACTAGCC 59.273 52.381 11.94 0.00 0.00 3.93
295 296 1.344763 AGCGAACTGTTTGACTAGCCT 59.655 47.619 11.94 0.00 0.00 4.58
296 297 1.727335 GCGAACTGTTTGACTAGCCTC 59.273 52.381 11.94 0.00 0.00 4.70
297 298 2.338500 CGAACTGTTTGACTAGCCTCC 58.662 52.381 1.33 0.00 0.00 4.30
298 299 2.028930 CGAACTGTTTGACTAGCCTCCT 60.029 50.000 1.33 0.00 0.00 3.69
299 300 3.591023 GAACTGTTTGACTAGCCTCCTC 58.409 50.000 0.00 0.00 0.00 3.71
300 301 1.903183 ACTGTTTGACTAGCCTCCTCC 59.097 52.381 0.00 0.00 0.00 4.30
301 302 2.183679 CTGTTTGACTAGCCTCCTCCT 58.816 52.381 0.00 0.00 0.00 3.69
302 303 2.167487 CTGTTTGACTAGCCTCCTCCTC 59.833 54.545 0.00 0.00 0.00 3.71
303 304 2.225394 TGTTTGACTAGCCTCCTCCTCT 60.225 50.000 0.00 0.00 0.00 3.69
304 305 2.429250 GTTTGACTAGCCTCCTCCTCTC 59.571 54.545 0.00 0.00 0.00 3.20
305 306 0.553819 TGACTAGCCTCCTCCTCTCC 59.446 60.000 0.00 0.00 0.00 3.71
306 307 0.850784 GACTAGCCTCCTCCTCTCCT 59.149 60.000 0.00 0.00 0.00 3.69
307 308 1.216930 GACTAGCCTCCTCCTCTCCTT 59.783 57.143 0.00 0.00 0.00 3.36
308 309 1.063266 ACTAGCCTCCTCCTCTCCTTG 60.063 57.143 0.00 0.00 0.00 3.61
309 310 1.011595 TAGCCTCCTCCTCTCCTTGT 58.988 55.000 0.00 0.00 0.00 3.16
310 311 0.118144 AGCCTCCTCCTCTCCTTGTT 59.882 55.000 0.00 0.00 0.00 2.83
311 312 0.988063 GCCTCCTCCTCTCCTTGTTT 59.012 55.000 0.00 0.00 0.00 2.83
312 313 1.352687 GCCTCCTCCTCTCCTTGTTTT 59.647 52.381 0.00 0.00 0.00 2.43
313 314 2.616765 GCCTCCTCCTCTCCTTGTTTTC 60.617 54.545 0.00 0.00 0.00 2.29
314 315 2.026729 CCTCCTCCTCTCCTTGTTTTCC 60.027 54.545 0.00 0.00 0.00 3.13
315 316 2.909662 CTCCTCCTCTCCTTGTTTTCCT 59.090 50.000 0.00 0.00 0.00 3.36
316 317 2.907042 TCCTCCTCTCCTTGTTTTCCTC 59.093 50.000 0.00 0.00 0.00 3.71
317 318 2.639839 CCTCCTCTCCTTGTTTTCCTCA 59.360 50.000 0.00 0.00 0.00 3.86
318 319 3.073062 CCTCCTCTCCTTGTTTTCCTCAA 59.927 47.826 0.00 0.00 0.00 3.02
319 320 4.263683 CCTCCTCTCCTTGTTTTCCTCAAT 60.264 45.833 0.00 0.00 0.00 2.57
320 321 4.911390 TCCTCTCCTTGTTTTCCTCAATC 58.089 43.478 0.00 0.00 0.00 2.67
321 322 4.599241 TCCTCTCCTTGTTTTCCTCAATCT 59.401 41.667 0.00 0.00 0.00 2.40
322 323 5.073691 TCCTCTCCTTGTTTTCCTCAATCTT 59.926 40.000 0.00 0.00 0.00 2.40
323 324 5.182760 CCTCTCCTTGTTTTCCTCAATCTTG 59.817 44.000 0.00 0.00 0.00 3.02
324 325 5.694995 TCTCCTTGTTTTCCTCAATCTTGT 58.305 37.500 0.00 0.00 0.00 3.16
325 326 6.129179 TCTCCTTGTTTTCCTCAATCTTGTT 58.871 36.000 0.00 0.00 0.00 2.83
326 327 7.287061 TCTCCTTGTTTTCCTCAATCTTGTTA 58.713 34.615 0.00 0.00 0.00 2.41
327 328 7.228706 TCTCCTTGTTTTCCTCAATCTTGTTAC 59.771 37.037 0.00 0.00 0.00 2.50
328 329 6.264518 TCCTTGTTTTCCTCAATCTTGTTACC 59.735 38.462 0.00 0.00 0.00 2.85
329 330 6.399639 TTGTTTTCCTCAATCTTGTTACCC 57.600 37.500 0.00 0.00 0.00 3.69
330 331 5.701224 TGTTTTCCTCAATCTTGTTACCCT 58.299 37.500 0.00 0.00 0.00 4.34
331 332 5.768164 TGTTTTCCTCAATCTTGTTACCCTC 59.232 40.000 0.00 0.00 0.00 4.30
332 333 4.569719 TTCCTCAATCTTGTTACCCTCC 57.430 45.455 0.00 0.00 0.00 4.30
333 334 3.803340 TCCTCAATCTTGTTACCCTCCT 58.197 45.455 0.00 0.00 0.00 3.69
334 335 3.775316 TCCTCAATCTTGTTACCCTCCTC 59.225 47.826 0.00 0.00 0.00 3.71
335 336 3.519510 CCTCAATCTTGTTACCCTCCTCA 59.480 47.826 0.00 0.00 0.00 3.86
336 337 4.164988 CCTCAATCTTGTTACCCTCCTCAT 59.835 45.833 0.00 0.00 0.00 2.90
337 338 5.359194 TCAATCTTGTTACCCTCCTCATC 57.641 43.478 0.00 0.00 0.00 2.92
338 339 4.122776 CAATCTTGTTACCCTCCTCATCG 58.877 47.826 0.00 0.00 0.00 3.84
339 340 3.095912 TCTTGTTACCCTCCTCATCGA 57.904 47.619 0.00 0.00 0.00 3.59
340 341 3.437213 TCTTGTTACCCTCCTCATCGAA 58.563 45.455 0.00 0.00 0.00 3.71
341 342 4.030913 TCTTGTTACCCTCCTCATCGAAT 58.969 43.478 0.00 0.00 0.00 3.34
342 343 4.469945 TCTTGTTACCCTCCTCATCGAATT 59.530 41.667 0.00 0.00 0.00 2.17
343 344 4.837093 TGTTACCCTCCTCATCGAATTT 57.163 40.909 0.00 0.00 0.00 1.82
344 345 4.513442 TGTTACCCTCCTCATCGAATTTG 58.487 43.478 0.00 0.00 0.00 2.32
345 346 4.019681 TGTTACCCTCCTCATCGAATTTGT 60.020 41.667 0.00 0.00 0.00 2.83
346 347 3.721087 ACCCTCCTCATCGAATTTGTT 57.279 42.857 0.00 0.00 0.00 2.83
347 348 3.347216 ACCCTCCTCATCGAATTTGTTG 58.653 45.455 0.00 0.00 0.00 3.33
348 349 3.244911 ACCCTCCTCATCGAATTTGTTGT 60.245 43.478 0.00 0.00 0.00 3.32
349 350 4.019681 ACCCTCCTCATCGAATTTGTTGTA 60.020 41.667 0.00 0.00 0.00 2.41
350 351 5.126067 CCCTCCTCATCGAATTTGTTGTAT 58.874 41.667 0.00 0.00 0.00 2.29
351 352 5.590259 CCCTCCTCATCGAATTTGTTGTATT 59.410 40.000 0.00 0.00 0.00 1.89
352 353 6.238484 CCCTCCTCATCGAATTTGTTGTATTC 60.238 42.308 0.00 0.00 0.00 1.75
353 354 6.238484 CCTCCTCATCGAATTTGTTGTATTCC 60.238 42.308 0.00 0.00 0.00 3.01
354 355 5.293324 TCCTCATCGAATTTGTTGTATTCCG 59.707 40.000 0.00 0.00 0.00 4.30
355 356 5.478233 TCATCGAATTTGTTGTATTCCGG 57.522 39.130 0.00 0.00 0.00 5.14
356 357 4.334203 TCATCGAATTTGTTGTATTCCGGG 59.666 41.667 0.00 0.00 0.00 5.73
357 358 3.011119 TCGAATTTGTTGTATTCCGGGG 58.989 45.455 0.00 0.00 0.00 5.73
358 359 2.098443 CGAATTTGTTGTATTCCGGGGG 59.902 50.000 0.00 0.00 0.00 5.40
359 360 2.911552 ATTTGTTGTATTCCGGGGGT 57.088 45.000 0.00 0.00 0.00 4.95
360 361 4.271661 GAATTTGTTGTATTCCGGGGGTA 58.728 43.478 0.00 0.00 0.00 3.69
361 362 3.353370 TTTGTTGTATTCCGGGGGTAG 57.647 47.619 0.00 0.00 0.00 3.18
362 363 2.250921 TGTTGTATTCCGGGGGTAGA 57.749 50.000 0.00 0.00 0.00 2.59
363 364 2.549082 TGTTGTATTCCGGGGGTAGAA 58.451 47.619 0.00 0.00 0.00 2.10
364 365 2.236893 TGTTGTATTCCGGGGGTAGAAC 59.763 50.000 0.00 8.03 0.00 3.01
365 366 1.113788 TGTATTCCGGGGGTAGAACG 58.886 55.000 0.00 0.00 0.00 3.95
366 367 1.341877 TGTATTCCGGGGGTAGAACGA 60.342 52.381 0.00 0.00 0.00 3.85
367 368 1.756538 GTATTCCGGGGGTAGAACGAA 59.243 52.381 0.00 0.00 0.00 3.85
368 369 1.278537 ATTCCGGGGGTAGAACGAAA 58.721 50.000 0.00 0.00 0.00 3.46
369 370 1.278537 TTCCGGGGGTAGAACGAAAT 58.721 50.000 0.00 0.00 0.00 2.17
370 371 0.538118 TCCGGGGGTAGAACGAAATG 59.462 55.000 0.00 0.00 0.00 2.32
371 372 0.251073 CCGGGGGTAGAACGAAATGT 59.749 55.000 0.00 0.00 0.00 2.71
372 373 1.339342 CCGGGGGTAGAACGAAATGTT 60.339 52.381 0.00 0.00 45.61 2.71
385 386 6.575162 AACGAAATGTTCCATAAGCTTCTT 57.425 33.333 0.00 0.00 35.27 2.52
386 387 5.942872 ACGAAATGTTCCATAAGCTTCTTG 58.057 37.500 0.00 1.86 0.00 3.02
387 388 5.705441 ACGAAATGTTCCATAAGCTTCTTGA 59.295 36.000 0.00 0.00 0.00 3.02
388 389 6.206634 ACGAAATGTTCCATAAGCTTCTTGAA 59.793 34.615 0.00 0.00 0.00 2.69
389 390 6.744537 CGAAATGTTCCATAAGCTTCTTGAAG 59.255 38.462 0.00 6.04 0.00 3.02
390 391 5.573337 ATGTTCCATAAGCTTCTTGAAGC 57.427 39.130 23.24 23.24 45.81 3.86
422 423 8.835467 TTTTTGTTCTCTTATCGACAAAAGTG 57.165 30.769 11.50 4.48 46.38 3.16
423 424 7.780008 TTTGTTCTCTTATCGACAAAAGTGA 57.220 32.000 0.00 0.00 38.58 3.41
424 425 7.780008 TTGTTCTCTTATCGACAAAAGTGAA 57.220 32.000 13.30 13.30 34.55 3.18
425 426 7.780008 TGTTCTCTTATCGACAAAAGTGAAA 57.220 32.000 16.59 9.26 37.12 2.69
426 427 7.627340 TGTTCTCTTATCGACAAAAGTGAAAC 58.373 34.615 16.59 12.68 37.12 2.78
427 428 6.780706 TCTCTTATCGACAAAAGTGAAACC 57.219 37.500 0.00 0.00 37.80 3.27
428 429 6.285224 TCTCTTATCGACAAAAGTGAAACCA 58.715 36.000 0.00 0.00 37.80 3.67
429 430 6.934645 TCTCTTATCGACAAAAGTGAAACCAT 59.065 34.615 0.00 0.00 37.80 3.55
430 431 7.117812 TCTCTTATCGACAAAAGTGAAACCATC 59.882 37.037 0.00 0.00 37.80 3.51
431 432 6.708502 TCTTATCGACAAAAGTGAAACCATCA 59.291 34.615 0.00 0.00 37.80 3.07
432 433 5.766150 ATCGACAAAAGTGAAACCATCAA 57.234 34.783 0.00 0.00 40.50 2.57
433 434 5.766150 TCGACAAAAGTGAAACCATCAAT 57.234 34.783 0.00 0.00 40.50 2.57
435 436 6.205784 TCGACAAAAGTGAAACCATCAATTC 58.794 36.000 0.00 0.00 45.02 2.17
436 437 5.115472 CGACAAAAGTGAAACCATCAATTCG 59.885 40.000 0.00 0.00 45.02 3.34
437 438 5.901552 ACAAAAGTGAAACCATCAATTCGT 58.098 33.333 0.00 0.00 45.02 3.85
438 439 5.748152 ACAAAAGTGAAACCATCAATTCGTG 59.252 36.000 0.00 0.00 45.02 4.35
439 440 3.559238 AGTGAAACCATCAATTCGTGC 57.441 42.857 0.00 0.00 40.50 5.34
440 441 2.228822 AGTGAAACCATCAATTCGTGCC 59.771 45.455 0.00 0.00 40.50 5.01
441 442 2.228822 GTGAAACCATCAATTCGTGCCT 59.771 45.455 0.00 0.00 40.50 4.75
442 443 2.890311 TGAAACCATCAATTCGTGCCTT 59.110 40.909 0.00 0.00 34.30 4.35
443 444 3.057596 TGAAACCATCAATTCGTGCCTTC 60.058 43.478 0.00 0.00 34.30 3.46
444 445 2.496899 ACCATCAATTCGTGCCTTCT 57.503 45.000 0.00 0.00 0.00 2.85
445 446 2.795329 ACCATCAATTCGTGCCTTCTT 58.205 42.857 0.00 0.00 0.00 2.52
446 447 3.157087 ACCATCAATTCGTGCCTTCTTT 58.843 40.909 0.00 0.00 0.00 2.52
447 448 3.057315 ACCATCAATTCGTGCCTTCTTTG 60.057 43.478 0.00 0.00 0.00 2.77
448 449 3.504863 CATCAATTCGTGCCTTCTTTGG 58.495 45.455 0.00 0.00 0.00 3.28
459 460 2.800250 CCTTCTTTGGCTCATTCCACT 58.200 47.619 0.00 0.00 35.50 4.00
460 461 2.751806 CCTTCTTTGGCTCATTCCACTC 59.248 50.000 0.00 0.00 35.50 3.51
461 462 2.496899 TCTTTGGCTCATTCCACTCC 57.503 50.000 0.00 0.00 35.50 3.85
462 463 1.988107 TCTTTGGCTCATTCCACTCCT 59.012 47.619 0.00 0.00 35.50 3.69
463 464 2.089980 CTTTGGCTCATTCCACTCCTG 58.910 52.381 0.00 0.00 35.50 3.86
464 465 0.329261 TTGGCTCATTCCACTCCTGG 59.671 55.000 0.00 0.00 39.23 4.45
465 466 0.547471 TGGCTCATTCCACTCCTGGA 60.547 55.000 0.00 0.00 45.68 3.86
471 472 2.524044 TCCACTCCTGGACGGTGA 59.476 61.111 15.50 2.19 42.15 4.02
472 473 1.078528 TCCACTCCTGGACGGTGAT 59.921 57.895 15.50 0.00 42.15 3.06
473 474 0.970937 TCCACTCCTGGACGGTGATC 60.971 60.000 15.50 0.00 42.15 2.92
474 475 1.139734 CACTCCTGGACGGTGATCG 59.860 63.158 9.81 0.00 45.88 3.69
475 476 1.001269 ACTCCTGGACGGTGATCGA 60.001 57.895 0.00 0.00 42.43 3.59
476 477 1.032657 ACTCCTGGACGGTGATCGAG 61.033 60.000 0.00 0.00 42.43 4.04
477 478 0.748367 CTCCTGGACGGTGATCGAGA 60.748 60.000 0.00 0.00 42.43 4.04
478 479 1.030488 TCCTGGACGGTGATCGAGAC 61.030 60.000 0.00 0.00 42.43 3.36
479 480 1.062685 CTGGACGGTGATCGAGACG 59.937 63.158 0.00 0.00 42.43 4.18
480 481 1.645704 CTGGACGGTGATCGAGACGT 61.646 60.000 0.00 6.24 42.43 4.34
481 482 1.239296 TGGACGGTGATCGAGACGTT 61.239 55.000 0.00 0.00 42.43 3.99
482 483 0.797249 GGACGGTGATCGAGACGTTG 60.797 60.000 0.00 0.00 42.43 4.10
483 484 0.109873 GACGGTGATCGAGACGTTGT 60.110 55.000 0.00 0.00 42.43 3.32
484 485 0.109873 ACGGTGATCGAGACGTTGTC 60.110 55.000 0.00 0.00 42.43 3.18
485 486 0.168348 CGGTGATCGAGACGTTGTCT 59.832 55.000 0.00 0.00 46.42 3.41
500 501 2.672961 TGTCTCTAACAATGGCTCCG 57.327 50.000 0.00 0.00 34.03 4.63
501 502 1.291132 GTCTCTAACAATGGCTCCGC 58.709 55.000 0.00 0.00 0.00 5.54
502 503 0.901827 TCTCTAACAATGGCTCCGCA 59.098 50.000 0.00 0.00 0.00 5.69
503 504 1.486310 TCTCTAACAATGGCTCCGCAT 59.514 47.619 0.00 0.00 0.00 4.73
504 505 2.092968 TCTCTAACAATGGCTCCGCATT 60.093 45.455 0.00 0.00 0.00 3.56
505 506 2.016318 TCTAACAATGGCTCCGCATTG 58.984 47.619 10.68 10.68 42.62 2.82
506 507 1.066002 CTAACAATGGCTCCGCATTGG 59.934 52.381 15.10 1.74 41.60 3.16
507 508 2.105528 CAATGGCTCCGCATTGGC 59.894 61.111 0.00 0.00 37.80 4.52
508 509 2.043652 AATGGCTCCGCATTGGCT 60.044 55.556 0.00 0.00 38.10 4.75
509 510 2.420568 AATGGCTCCGCATTGGCTG 61.421 57.895 0.00 0.00 38.10 4.85
511 512 4.802051 GGCTCCGCATTGGCTGGA 62.802 66.667 0.00 0.00 39.33 3.86
514 515 2.268920 TCCGCATTGGCTGGAGAC 59.731 61.111 0.00 0.00 37.64 3.36
515 516 2.270205 CCGCATTGGCTGGAGACT 59.730 61.111 0.00 0.00 36.29 3.24
516 517 1.377725 CCGCATTGGCTGGAGACTT 60.378 57.895 0.00 0.00 36.29 3.01
517 518 1.372087 CCGCATTGGCTGGAGACTTC 61.372 60.000 0.00 0.00 36.29 3.01
518 519 0.674581 CGCATTGGCTGGAGACTTCA 60.675 55.000 0.00 0.00 38.10 3.02
519 520 1.760192 GCATTGGCTGGAGACTTCAT 58.240 50.000 0.00 0.00 36.96 2.57
520 521 2.097825 GCATTGGCTGGAGACTTCATT 58.902 47.619 0.00 0.00 36.96 2.57
521 522 3.282021 GCATTGGCTGGAGACTTCATTA 58.718 45.455 0.00 0.00 36.96 1.90
522 523 3.314635 GCATTGGCTGGAGACTTCATTAG 59.685 47.826 0.00 0.00 36.96 1.73
523 524 4.521146 CATTGGCTGGAGACTTCATTAGT 58.479 43.478 0.00 0.00 40.71 2.24
524 525 6.934862 GCATTGGCTGGAGACTTCATTAGTC 61.935 48.000 0.00 0.00 44.41 2.59
532 533 1.925185 GACTTCATTAGTCGCGGTTCC 59.075 52.381 6.13 0.00 43.59 3.62
533 534 1.549170 ACTTCATTAGTCGCGGTTCCT 59.451 47.619 6.13 0.00 28.23 3.36
534 535 2.756760 ACTTCATTAGTCGCGGTTCCTA 59.243 45.455 6.13 0.00 28.23 2.94
535 536 2.857592 TCATTAGTCGCGGTTCCTAC 57.142 50.000 6.13 0.00 0.00 3.18
536 537 2.093890 TCATTAGTCGCGGTTCCTACA 58.906 47.619 6.13 0.00 0.00 2.74
537 538 2.098607 TCATTAGTCGCGGTTCCTACAG 59.901 50.000 6.13 0.00 0.00 2.74
538 539 1.538047 TTAGTCGCGGTTCCTACAGT 58.462 50.000 6.13 0.00 0.00 3.55
539 540 1.538047 TAGTCGCGGTTCCTACAGTT 58.462 50.000 6.13 0.00 0.00 3.16
540 541 0.677842 AGTCGCGGTTCCTACAGTTT 59.322 50.000 6.13 0.00 0.00 2.66
541 542 1.066136 GTCGCGGTTCCTACAGTTTC 58.934 55.000 6.13 0.00 0.00 2.78
542 543 0.387622 TCGCGGTTCCTACAGTTTCG 60.388 55.000 6.13 0.00 0.00 3.46
543 544 1.785951 GCGGTTCCTACAGTTTCGC 59.214 57.895 0.00 0.00 35.12 4.70
544 545 1.952266 GCGGTTCCTACAGTTTCGCG 61.952 60.000 0.00 0.00 32.72 5.87
545 546 0.387622 CGGTTCCTACAGTTTCGCGA 60.388 55.000 3.71 3.71 0.00 5.87
546 547 1.066136 GGTTCCTACAGTTTCGCGAC 58.934 55.000 9.15 0.00 0.00 5.19
547 548 1.336609 GGTTCCTACAGTTTCGCGACT 60.337 52.381 9.15 0.00 0.00 4.18
548 549 2.095059 GGTTCCTACAGTTTCGCGACTA 60.095 50.000 9.15 0.00 0.00 2.59
549 550 3.568538 GTTCCTACAGTTTCGCGACTAA 58.431 45.455 9.15 0.00 0.00 2.24
550 551 4.171754 GTTCCTACAGTTTCGCGACTAAT 58.828 43.478 9.15 0.00 0.00 1.73
551 552 3.766151 TCCTACAGTTTCGCGACTAATG 58.234 45.455 9.15 12.42 0.00 1.90
552 553 3.441222 TCCTACAGTTTCGCGACTAATGA 59.559 43.478 20.39 0.00 0.00 2.57
553 554 3.791887 CCTACAGTTTCGCGACTAATGAG 59.208 47.826 20.39 13.78 0.00 2.90
554 555 2.607187 ACAGTTTCGCGACTAATGAGG 58.393 47.619 20.39 2.84 0.00 3.86
555 556 1.324736 CAGTTTCGCGACTAATGAGGC 59.675 52.381 9.15 0.00 0.00 4.70
556 557 1.204941 AGTTTCGCGACTAATGAGGCT 59.795 47.619 9.15 0.00 0.00 4.58
557 558 1.324736 GTTTCGCGACTAATGAGGCTG 59.675 52.381 9.15 0.00 0.00 4.85
558 559 0.179111 TTCGCGACTAATGAGGCTGG 60.179 55.000 9.15 0.00 0.00 4.85
559 560 1.035385 TCGCGACTAATGAGGCTGGA 61.035 55.000 3.71 0.00 0.00 3.86
560 561 0.872021 CGCGACTAATGAGGCTGGAC 60.872 60.000 0.00 0.00 0.00 4.02
561 562 0.872021 GCGACTAATGAGGCTGGACG 60.872 60.000 0.00 0.00 0.00 4.79
562 563 0.249073 CGACTAATGAGGCTGGACGG 60.249 60.000 0.00 0.00 0.00 4.79
563 564 1.112113 GACTAATGAGGCTGGACGGA 58.888 55.000 0.00 0.00 0.00 4.69
564 565 1.480954 GACTAATGAGGCTGGACGGAA 59.519 52.381 0.00 0.00 0.00 4.30
565 566 1.482593 ACTAATGAGGCTGGACGGAAG 59.517 52.381 0.00 0.00 0.00 3.46
566 567 0.178068 TAATGAGGCTGGACGGAAGC 59.822 55.000 0.00 0.00 40.06 3.86
571 572 2.665603 GCTGGACGGAAGCCTCTT 59.334 61.111 0.00 0.00 34.45 2.85
572 573 1.003233 GCTGGACGGAAGCCTCTTT 60.003 57.895 0.00 0.00 34.45 2.52
573 574 0.606673 GCTGGACGGAAGCCTCTTTT 60.607 55.000 0.00 0.00 34.45 2.27
574 575 1.897560 CTGGACGGAAGCCTCTTTTT 58.102 50.000 0.00 0.00 0.00 1.94
575 576 1.807142 CTGGACGGAAGCCTCTTTTTC 59.193 52.381 0.00 0.00 0.00 2.29
576 577 1.420138 TGGACGGAAGCCTCTTTTTCT 59.580 47.619 0.00 0.00 0.00 2.52
577 578 2.635915 TGGACGGAAGCCTCTTTTTCTA 59.364 45.455 0.00 0.00 0.00 2.10
578 579 3.001414 GGACGGAAGCCTCTTTTTCTAC 58.999 50.000 0.00 0.00 0.00 2.59
579 580 3.306849 GGACGGAAGCCTCTTTTTCTACT 60.307 47.826 0.00 0.00 0.00 2.57
580 581 4.081807 GGACGGAAGCCTCTTTTTCTACTA 60.082 45.833 0.00 0.00 0.00 1.82
581 582 5.074584 ACGGAAGCCTCTTTTTCTACTAG 57.925 43.478 0.00 0.00 0.00 2.57
582 583 4.527427 ACGGAAGCCTCTTTTTCTACTAGT 59.473 41.667 0.00 0.00 0.00 2.57
583 584 5.103687 CGGAAGCCTCTTTTTCTACTAGTC 58.896 45.833 0.00 0.00 0.00 2.59
584 585 5.103687 GGAAGCCTCTTTTTCTACTAGTCG 58.896 45.833 0.00 0.00 0.00 4.18
585 586 5.105837 GGAAGCCTCTTTTTCTACTAGTCGA 60.106 44.000 0.00 0.00 0.00 4.20
586 587 5.313520 AGCCTCTTTTTCTACTAGTCGAC 57.686 43.478 7.70 7.70 0.00 4.20
587 588 4.765856 AGCCTCTTTTTCTACTAGTCGACA 59.234 41.667 19.50 2.84 0.00 4.35
588 589 4.858140 GCCTCTTTTTCTACTAGTCGACAC 59.142 45.833 19.50 0.00 0.00 3.67
589 590 5.087397 CCTCTTTTTCTACTAGTCGACACG 58.913 45.833 19.50 10.40 0.00 4.49
590 591 5.039480 TCTTTTTCTACTAGTCGACACGG 57.961 43.478 19.50 9.45 0.00 4.94
591 592 2.907910 TTTCTACTAGTCGACACGGC 57.092 50.000 19.50 0.00 0.00 5.68
592 593 0.723414 TTCTACTAGTCGACACGGCG 59.277 55.000 19.50 4.80 36.23 6.46
593 594 1.086067 TCTACTAGTCGACACGGCGG 61.086 60.000 19.50 2.35 36.23 6.13
594 595 2.643764 CTACTAGTCGACACGGCGGC 62.644 65.000 19.50 0.00 36.23 6.53
625 626 3.702048 CCCTCGGGTCGCCTCAAA 61.702 66.667 0.00 0.00 0.00 2.69
626 627 2.125512 CCTCGGGTCGCCTCAAAG 60.126 66.667 0.00 0.00 0.00 2.77
627 628 2.125512 CTCGGGTCGCCTCAAAGG 60.126 66.667 0.00 0.00 38.80 3.11
628 629 2.602267 TCGGGTCGCCTCAAAGGA 60.602 61.111 0.00 0.00 37.67 3.36
629 630 2.125512 CGGGTCGCCTCAAAGGAG 60.126 66.667 0.00 0.00 37.67 3.69
637 638 3.862124 CTCAAAGGAGGCGACACG 58.138 61.111 0.00 0.00 37.51 4.49
638 639 1.289066 CTCAAAGGAGGCGACACGA 59.711 57.895 0.00 0.00 37.51 4.35
639 640 0.734253 CTCAAAGGAGGCGACACGAG 60.734 60.000 0.00 0.00 37.51 4.18
640 641 1.738099 CAAAGGAGGCGACACGAGG 60.738 63.158 0.00 0.00 0.00 4.63
641 642 2.943978 AAAGGAGGCGACACGAGGG 61.944 63.158 0.00 0.00 0.00 4.30
666 667 2.186532 GGGGGTTCTGTTCAACTCTC 57.813 55.000 0.00 0.00 0.00 3.20
992 1026 0.989164 TCGTCGTTTCTTGCATAGCG 59.011 50.000 0.00 0.00 0.00 4.26
1246 1328 0.607489 GCATGTTGTCTGTCCTGCCT 60.607 55.000 0.00 0.00 0.00 4.75
1294 1388 3.692593 ACCAGTGACCGCCATTAATTAAC 59.307 43.478 0.00 0.00 0.00 2.01
1397 1491 0.038526 GCTTCGGGTTTGTCGAGAGA 60.039 55.000 0.00 0.00 37.93 3.10
1755 1869 2.388232 GCACACGATTGGGACGTCC 61.388 63.158 27.04 27.04 42.07 4.79
2193 2320 3.795877 ACAAGGCTGTTTTGATTTGTGG 58.204 40.909 0.00 0.00 28.57 4.17
2195 2322 1.139163 GGCTGTTTTGATTTGTGGCG 58.861 50.000 0.00 0.00 0.00 5.69
2312 2463 2.521105 AGTTCCTTGTACACACGACC 57.479 50.000 0.00 0.00 0.00 4.79
2362 2513 2.166459 GTCGTCCATTGTCATCTGGAGA 59.834 50.000 5.17 3.68 42.10 3.71
2363 2514 3.033909 TCGTCCATTGTCATCTGGAGAT 58.966 45.455 5.17 0.00 42.10 2.75
2364 2515 3.452264 TCGTCCATTGTCATCTGGAGATT 59.548 43.478 5.17 0.00 42.10 2.40
2406 2560 9.444600 ACTAGTTTTGTCTAAGTTTGTCTTTGA 57.555 29.630 0.00 0.00 37.56 2.69
2546 2711 4.169856 AGTTATTTGGGGCAGGATGGATAA 59.830 41.667 0.00 0.00 35.86 1.75
2613 4571 7.068103 TGCATTTGGTCTCTTCTTGTTAGAAAA 59.932 33.333 0.00 0.00 39.80 2.29
2688 4655 5.776173 AGAACGATAGATCCAAGGTACTG 57.224 43.478 0.00 0.00 37.41 2.74
2711 4680 3.700038 CCTCCGTCTAGGTGTAAGTCATT 59.300 47.826 0.00 0.00 41.99 2.57
2730 4699 1.732941 TTAAGGTTGTGCATCGCGAT 58.267 45.000 17.62 17.62 0.00 4.58
2736 4710 1.368345 TTGTGCATCGCGATCAAGGG 61.368 55.000 20.85 8.95 0.00 3.95
2821 4810 6.403049 ACTGACCATTGTATATCGTGTTTGA 58.597 36.000 0.00 0.00 0.00 2.69
2829 4818 8.630840 CATTGTATATCGTGTTTGATAGTCTCG 58.369 37.037 0.00 0.00 34.50 4.04
2902 4893 8.696410 TTATTTGTGTCAAGAAACAAGAAACC 57.304 30.769 5.99 0.00 37.57 3.27
2923 4914 2.552599 TGTGGAAGTTAATGCACCGA 57.447 45.000 0.00 0.00 40.53 4.69
3001 4993 6.581166 ACGCGGAGTCAATAAGAAAATTTTTC 59.419 34.615 12.47 12.94 0.00 2.29
3002 4994 6.580791 CGCGGAGTCAATAAGAAAATTTTTCA 59.419 34.615 20.80 4.82 0.00 2.69
3003 4995 7.201266 CGCGGAGTCAATAAGAAAATTTTTCAG 60.201 37.037 20.80 7.84 0.00 3.02
3004 4996 7.807907 GCGGAGTCAATAAGAAAATTTTTCAGA 59.192 33.333 20.80 10.37 0.00 3.27
3073 5065 2.029649 GGTGCATTTGAGCTCATGTGTT 60.030 45.455 19.04 0.00 34.99 3.32
3075 5067 2.029739 TGCATTTGAGCTCATGTGTTGG 60.030 45.455 19.04 4.60 34.99 3.77
3113 5105 6.238130 GCTTTTCAAGGCGTTTATAGACCTAG 60.238 42.308 0.00 0.00 0.00 3.02
3118 5110 5.470047 AGGCGTTTATAGACCTAGGAATG 57.530 43.478 17.98 4.59 0.00 2.67
3119 5111 4.900054 AGGCGTTTATAGACCTAGGAATGT 59.100 41.667 17.98 4.10 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 201 4.265073 ACTTTGTCAAGCAGAACAAGACT 58.735 39.130 0.00 0.00 32.57 3.24
201 202 4.094887 TGACTTTGTCAAGCAGAACAAGAC 59.905 41.667 0.00 0.00 39.78 3.01
202 203 4.260985 TGACTTTGTCAAGCAGAACAAGA 58.739 39.130 0.00 0.00 39.78 3.02
203 204 4.621068 TGACTTTGTCAAGCAGAACAAG 57.379 40.909 0.00 0.00 39.78 3.16
204 205 4.202040 CCATGACTTTGTCAAGCAGAACAA 60.202 41.667 4.46 0.00 45.96 2.83
205 206 3.316029 CCATGACTTTGTCAAGCAGAACA 59.684 43.478 4.46 0.00 45.96 3.18
206 207 3.304928 CCCATGACTTTGTCAAGCAGAAC 60.305 47.826 4.46 0.00 45.96 3.01
207 208 2.886523 CCCATGACTTTGTCAAGCAGAA 59.113 45.455 4.46 0.00 45.96 3.02
208 209 2.507484 CCCATGACTTTGTCAAGCAGA 58.493 47.619 4.46 0.00 45.96 4.26
209 210 1.068055 GCCCATGACTTTGTCAAGCAG 60.068 52.381 4.46 0.00 45.96 4.24
210 211 0.961019 GCCCATGACTTTGTCAAGCA 59.039 50.000 4.46 0.00 45.96 3.91
211 212 1.251251 AGCCCATGACTTTGTCAAGC 58.749 50.000 4.46 8.17 45.96 4.01
212 213 3.942829 TCTAGCCCATGACTTTGTCAAG 58.057 45.455 4.46 0.50 45.96 3.02
213 214 4.574674 ATCTAGCCCATGACTTTGTCAA 57.425 40.909 4.46 0.00 45.96 3.18
214 215 4.574674 AATCTAGCCCATGACTTTGTCA 57.425 40.909 2.77 2.77 46.90 3.58
215 216 5.644644 CAAAATCTAGCCCATGACTTTGTC 58.355 41.667 0.00 0.00 28.67 3.18
216 217 4.082026 GCAAAATCTAGCCCATGACTTTGT 60.082 41.667 0.00 0.00 33.61 2.83
217 218 4.159135 AGCAAAATCTAGCCCATGACTTTG 59.841 41.667 0.00 0.00 34.02 2.77
218 219 4.347607 AGCAAAATCTAGCCCATGACTTT 58.652 39.130 0.00 0.00 0.00 2.66
219 220 3.973425 AGCAAAATCTAGCCCATGACTT 58.027 40.909 0.00 0.00 0.00 3.01
220 221 3.659183 AGCAAAATCTAGCCCATGACT 57.341 42.857 0.00 0.00 0.00 3.41
221 222 3.696051 TCAAGCAAAATCTAGCCCATGAC 59.304 43.478 0.00 0.00 0.00 3.06
222 223 3.966979 TCAAGCAAAATCTAGCCCATGA 58.033 40.909 0.00 0.00 0.00 3.07
223 224 4.724074 TTCAAGCAAAATCTAGCCCATG 57.276 40.909 0.00 0.00 0.00 3.66
224 225 5.945144 AATTCAAGCAAAATCTAGCCCAT 57.055 34.783 0.00 0.00 0.00 4.00
225 226 5.337491 GGAAATTCAAGCAAAATCTAGCCCA 60.337 40.000 0.00 0.00 0.00 5.36
226 227 5.111989 GGAAATTCAAGCAAAATCTAGCCC 58.888 41.667 0.00 0.00 0.00 5.19
227 228 4.800471 CGGAAATTCAAGCAAAATCTAGCC 59.200 41.667 0.00 0.00 0.00 3.93
228 229 4.800471 CCGGAAATTCAAGCAAAATCTAGC 59.200 41.667 0.00 0.00 0.00 3.42
229 230 6.194796 TCCGGAAATTCAAGCAAAATCTAG 57.805 37.500 0.00 0.00 0.00 2.43
230 231 6.582677 TTCCGGAAATTCAAGCAAAATCTA 57.417 33.333 16.28 0.00 0.00 1.98
231 232 5.467035 TTCCGGAAATTCAAGCAAAATCT 57.533 34.783 16.28 0.00 0.00 2.40
232 233 5.446340 GCATTCCGGAAATTCAAGCAAAATC 60.446 40.000 23.08 0.00 0.00 2.17
233 234 4.392754 GCATTCCGGAAATTCAAGCAAAAT 59.607 37.500 23.08 0.00 0.00 1.82
234 235 3.745458 GCATTCCGGAAATTCAAGCAAAA 59.255 39.130 23.08 0.00 0.00 2.44
235 236 3.324993 GCATTCCGGAAATTCAAGCAAA 58.675 40.909 23.08 0.00 0.00 3.68
236 237 2.670789 CGCATTCCGGAAATTCAAGCAA 60.671 45.455 23.08 0.00 0.00 3.91
237 238 1.135431 CGCATTCCGGAAATTCAAGCA 60.135 47.619 23.08 0.00 0.00 3.91
238 239 1.135402 ACGCATTCCGGAAATTCAAGC 60.135 47.619 23.08 16.22 42.52 4.01
239 240 2.785679 GACGCATTCCGGAAATTCAAG 58.214 47.619 23.08 11.83 42.52 3.02
240 241 1.129624 CGACGCATTCCGGAAATTCAA 59.870 47.619 23.08 0.00 42.52 2.69
241 242 0.724549 CGACGCATTCCGGAAATTCA 59.275 50.000 23.08 0.00 42.52 2.57
242 243 3.509266 CGACGCATTCCGGAAATTC 57.491 52.632 23.08 13.46 42.52 2.17
249 250 3.640000 GATGGCCGACGCATTCCG 61.640 66.667 0.00 0.00 44.21 4.30
250 251 0.531974 TAAGATGGCCGACGCATTCC 60.532 55.000 0.00 0.00 36.38 3.01
251 252 1.195448 CATAAGATGGCCGACGCATTC 59.805 52.381 0.00 0.00 36.38 2.67
252 253 1.202639 TCATAAGATGGCCGACGCATT 60.203 47.619 0.00 0.00 36.38 3.56
253 254 0.392706 TCATAAGATGGCCGACGCAT 59.607 50.000 0.00 0.00 36.38 4.73
254 255 0.176910 TTCATAAGATGGCCGACGCA 59.823 50.000 0.00 0.00 36.38 5.24
255 256 0.861837 CTTCATAAGATGGCCGACGC 59.138 55.000 0.00 0.00 0.00 5.19
256 257 2.398498 CTCTTCATAAGATGGCCGACG 58.602 52.381 0.00 0.00 36.82 5.12
257 258 2.139118 GCTCTTCATAAGATGGCCGAC 58.861 52.381 0.00 0.00 36.82 4.79
258 259 1.269778 CGCTCTTCATAAGATGGCCGA 60.270 52.381 0.00 0.00 36.82 5.54
259 260 1.143305 CGCTCTTCATAAGATGGCCG 58.857 55.000 0.00 0.00 36.82 6.13
260 261 2.533266 TCGCTCTTCATAAGATGGCC 57.467 50.000 0.00 0.00 36.82 5.36
261 262 3.247173 CAGTTCGCTCTTCATAAGATGGC 59.753 47.826 0.00 0.00 36.82 4.40
262 263 4.437239 ACAGTTCGCTCTTCATAAGATGG 58.563 43.478 0.00 0.00 36.82 3.51
263 264 6.091305 TCAAACAGTTCGCTCTTCATAAGATG 59.909 38.462 0.00 0.00 36.82 2.90
264 265 6.091441 GTCAAACAGTTCGCTCTTCATAAGAT 59.909 38.462 0.00 0.00 36.82 2.40
265 266 5.405571 GTCAAACAGTTCGCTCTTCATAAGA 59.594 40.000 0.00 0.00 35.87 2.10
266 267 5.406780 AGTCAAACAGTTCGCTCTTCATAAG 59.593 40.000 0.00 0.00 0.00 1.73
267 268 5.297547 AGTCAAACAGTTCGCTCTTCATAA 58.702 37.500 0.00 0.00 0.00 1.90
268 269 4.883083 AGTCAAACAGTTCGCTCTTCATA 58.117 39.130 0.00 0.00 0.00 2.15
269 270 3.733337 AGTCAAACAGTTCGCTCTTCAT 58.267 40.909 0.00 0.00 0.00 2.57
270 271 3.179443 AGTCAAACAGTTCGCTCTTCA 57.821 42.857 0.00 0.00 0.00 3.02
271 272 3.122111 GCTAGTCAAACAGTTCGCTCTTC 59.878 47.826 0.00 0.00 0.00 2.87
272 273 3.060602 GCTAGTCAAACAGTTCGCTCTT 58.939 45.455 0.00 0.00 0.00 2.85
273 274 2.610727 GGCTAGTCAAACAGTTCGCTCT 60.611 50.000 0.00 0.00 0.00 4.09
274 275 1.727335 GGCTAGTCAAACAGTTCGCTC 59.273 52.381 0.00 0.00 0.00 5.03
275 276 1.344763 AGGCTAGTCAAACAGTTCGCT 59.655 47.619 0.00 0.00 0.00 4.93
276 277 1.727335 GAGGCTAGTCAAACAGTTCGC 59.273 52.381 0.00 0.00 0.00 4.70
277 278 2.028930 AGGAGGCTAGTCAAACAGTTCG 60.029 50.000 0.00 0.00 0.00 3.95
278 279 3.591023 GAGGAGGCTAGTCAAACAGTTC 58.409 50.000 0.00 0.00 0.00 3.01
279 280 2.303311 GGAGGAGGCTAGTCAAACAGTT 59.697 50.000 0.00 0.00 0.00 3.16
280 281 1.903183 GGAGGAGGCTAGTCAAACAGT 59.097 52.381 0.00 0.00 0.00 3.55
281 282 2.167487 GAGGAGGAGGCTAGTCAAACAG 59.833 54.545 0.00 0.00 0.00 3.16
282 283 2.180276 GAGGAGGAGGCTAGTCAAACA 58.820 52.381 0.00 0.00 0.00 2.83
283 284 2.429250 GAGAGGAGGAGGCTAGTCAAAC 59.571 54.545 0.00 0.00 0.00 2.93
284 285 2.624557 GGAGAGGAGGAGGCTAGTCAAA 60.625 54.545 0.00 0.00 0.00 2.69
285 286 1.063567 GGAGAGGAGGAGGCTAGTCAA 60.064 57.143 0.00 0.00 0.00 3.18
286 287 0.553819 GGAGAGGAGGAGGCTAGTCA 59.446 60.000 0.00 0.00 0.00 3.41
287 288 0.850784 AGGAGAGGAGGAGGCTAGTC 59.149 60.000 0.00 0.00 0.00 2.59
288 289 1.063266 CAAGGAGAGGAGGAGGCTAGT 60.063 57.143 0.00 0.00 0.00 2.57
289 290 1.063266 ACAAGGAGAGGAGGAGGCTAG 60.063 57.143 0.00 0.00 0.00 3.42
290 291 1.011595 ACAAGGAGAGGAGGAGGCTA 58.988 55.000 0.00 0.00 0.00 3.93
291 292 0.118144 AACAAGGAGAGGAGGAGGCT 59.882 55.000 0.00 0.00 0.00 4.58
292 293 0.988063 AAACAAGGAGAGGAGGAGGC 59.012 55.000 0.00 0.00 0.00 4.70
293 294 2.026729 GGAAAACAAGGAGAGGAGGAGG 60.027 54.545 0.00 0.00 0.00 4.30
294 295 2.909662 AGGAAAACAAGGAGAGGAGGAG 59.090 50.000 0.00 0.00 0.00 3.69
295 296 2.907042 GAGGAAAACAAGGAGAGGAGGA 59.093 50.000 0.00 0.00 0.00 3.71
296 297 2.639839 TGAGGAAAACAAGGAGAGGAGG 59.360 50.000 0.00 0.00 0.00 4.30
297 298 4.357918 TTGAGGAAAACAAGGAGAGGAG 57.642 45.455 0.00 0.00 0.00 3.69
298 299 4.599241 AGATTGAGGAAAACAAGGAGAGGA 59.401 41.667 0.00 0.00 0.00 3.71
299 300 4.916183 AGATTGAGGAAAACAAGGAGAGG 58.084 43.478 0.00 0.00 0.00 3.69
300 301 5.767168 ACAAGATTGAGGAAAACAAGGAGAG 59.233 40.000 0.00 0.00 0.00 3.20
301 302 5.694995 ACAAGATTGAGGAAAACAAGGAGA 58.305 37.500 0.00 0.00 0.00 3.71
302 303 6.396829 AACAAGATTGAGGAAAACAAGGAG 57.603 37.500 0.00 0.00 0.00 3.69
303 304 6.264518 GGTAACAAGATTGAGGAAAACAAGGA 59.735 38.462 0.00 0.00 0.00 3.36
304 305 6.447162 GGTAACAAGATTGAGGAAAACAAGG 58.553 40.000 0.00 0.00 0.00 3.61
305 306 6.265422 AGGGTAACAAGATTGAGGAAAACAAG 59.735 38.462 0.00 0.00 39.74 3.16
306 307 6.133356 AGGGTAACAAGATTGAGGAAAACAA 58.867 36.000 0.00 0.00 39.74 2.83
307 308 5.701224 AGGGTAACAAGATTGAGGAAAACA 58.299 37.500 0.00 0.00 39.74 2.83
308 309 5.183331 GGAGGGTAACAAGATTGAGGAAAAC 59.817 44.000 0.00 0.00 39.74 2.43
309 310 5.074515 AGGAGGGTAACAAGATTGAGGAAAA 59.925 40.000 0.00 0.00 39.74 2.29
310 311 4.601857 AGGAGGGTAACAAGATTGAGGAAA 59.398 41.667 0.00 0.00 39.74 3.13
311 312 4.175962 AGGAGGGTAACAAGATTGAGGAA 58.824 43.478 0.00 0.00 39.74 3.36
312 313 3.775316 GAGGAGGGTAACAAGATTGAGGA 59.225 47.826 0.00 0.00 39.74 3.71
313 314 3.519510 TGAGGAGGGTAACAAGATTGAGG 59.480 47.826 0.00 0.00 39.74 3.86
314 315 4.826274 TGAGGAGGGTAACAAGATTGAG 57.174 45.455 0.00 0.00 39.74 3.02
315 316 4.141937 CGATGAGGAGGGTAACAAGATTGA 60.142 45.833 0.00 0.00 39.74 2.57
316 317 4.122776 CGATGAGGAGGGTAACAAGATTG 58.877 47.826 0.00 0.00 39.74 2.67
317 318 4.030913 TCGATGAGGAGGGTAACAAGATT 58.969 43.478 0.00 0.00 39.74 2.40
318 319 3.643237 TCGATGAGGAGGGTAACAAGAT 58.357 45.455 0.00 0.00 39.74 2.40
319 320 3.095912 TCGATGAGGAGGGTAACAAGA 57.904 47.619 0.00 0.00 39.74 3.02
320 321 3.887621 TTCGATGAGGAGGGTAACAAG 57.112 47.619 0.00 0.00 39.74 3.16
321 322 4.837093 AATTCGATGAGGAGGGTAACAA 57.163 40.909 0.00 0.00 39.74 2.83
322 323 4.019681 ACAAATTCGATGAGGAGGGTAACA 60.020 41.667 0.00 0.00 39.74 2.41
323 324 4.514401 ACAAATTCGATGAGGAGGGTAAC 58.486 43.478 0.00 0.00 0.00 2.50
324 325 4.837093 ACAAATTCGATGAGGAGGGTAA 57.163 40.909 0.00 0.00 0.00 2.85
325 326 4.019681 ACAACAAATTCGATGAGGAGGGTA 60.020 41.667 0.00 0.00 0.00 3.69
326 327 3.244911 ACAACAAATTCGATGAGGAGGGT 60.245 43.478 0.00 0.00 0.00 4.34
327 328 3.347216 ACAACAAATTCGATGAGGAGGG 58.653 45.455 0.00 0.00 0.00 4.30
328 329 6.238484 GGAATACAACAAATTCGATGAGGAGG 60.238 42.308 0.00 0.00 34.74 4.30
329 330 6.510157 CGGAATACAACAAATTCGATGAGGAG 60.510 42.308 0.00 0.00 34.74 3.69
330 331 5.293324 CGGAATACAACAAATTCGATGAGGA 59.707 40.000 0.00 0.00 34.74 3.71
331 332 5.501715 CGGAATACAACAAATTCGATGAGG 58.498 41.667 0.00 0.00 34.74 3.86
332 333 5.501715 CCGGAATACAACAAATTCGATGAG 58.498 41.667 0.00 0.00 34.74 2.90
333 334 4.334203 CCCGGAATACAACAAATTCGATGA 59.666 41.667 0.73 0.00 34.74 2.92
334 335 4.497340 CCCCGGAATACAACAAATTCGATG 60.497 45.833 0.73 0.00 34.74 3.84
335 336 3.630312 CCCCGGAATACAACAAATTCGAT 59.370 43.478 0.73 0.00 34.74 3.59
336 337 3.011119 CCCCGGAATACAACAAATTCGA 58.989 45.455 0.73 0.00 34.74 3.71
337 338 2.098443 CCCCCGGAATACAACAAATTCG 59.902 50.000 0.73 0.00 34.74 3.34
338 339 3.093814 ACCCCCGGAATACAACAAATTC 58.906 45.455 0.73 0.00 33.44 2.17
339 340 3.178412 ACCCCCGGAATACAACAAATT 57.822 42.857 0.73 0.00 0.00 1.82
340 341 2.911552 ACCCCCGGAATACAACAAAT 57.088 45.000 0.73 0.00 0.00 2.32
341 342 2.911636 TCTACCCCCGGAATACAACAAA 59.088 45.455 0.73 0.00 0.00 2.83
342 343 2.549082 TCTACCCCCGGAATACAACAA 58.451 47.619 0.73 0.00 0.00 2.83
343 344 2.236893 GTTCTACCCCCGGAATACAACA 59.763 50.000 0.73 0.00 0.00 3.33
344 345 2.739609 CGTTCTACCCCCGGAATACAAC 60.740 54.545 0.73 0.00 0.00 3.32
345 346 1.481772 CGTTCTACCCCCGGAATACAA 59.518 52.381 0.73 0.00 0.00 2.41
346 347 1.113788 CGTTCTACCCCCGGAATACA 58.886 55.000 0.73 0.00 0.00 2.29
347 348 1.402787 TCGTTCTACCCCCGGAATAC 58.597 55.000 0.73 0.00 0.00 1.89
348 349 2.157640 TTCGTTCTACCCCCGGAATA 57.842 50.000 0.73 0.00 0.00 1.75
349 350 1.278537 TTTCGTTCTACCCCCGGAAT 58.721 50.000 0.73 0.00 0.00 3.01
350 351 1.065998 CATTTCGTTCTACCCCCGGAA 60.066 52.381 0.73 0.00 0.00 4.30
351 352 0.538118 CATTTCGTTCTACCCCCGGA 59.462 55.000 0.73 0.00 0.00 5.14
352 353 0.251073 ACATTTCGTTCTACCCCCGG 59.749 55.000 0.00 0.00 0.00 5.73
353 354 2.103537 AACATTTCGTTCTACCCCCG 57.896 50.000 0.00 0.00 29.27 5.73
397 398 8.670135 TCACTTTTGTCGATAAGAGAACAAAAA 58.330 29.630 17.51 0.00 36.87 1.94
398 399 8.203937 TCACTTTTGTCGATAAGAGAACAAAA 57.796 30.769 17.51 11.93 36.22 2.44
399 400 7.780008 TCACTTTTGTCGATAAGAGAACAAA 57.220 32.000 17.51 5.24 31.34 2.83
400 401 7.780008 TTCACTTTTGTCGATAAGAGAACAA 57.220 32.000 17.51 5.70 31.34 2.83
401 402 7.254658 GGTTTCACTTTTGTCGATAAGAGAACA 60.255 37.037 17.51 7.29 33.00 3.18
402 403 7.070183 GGTTTCACTTTTGTCGATAAGAGAAC 58.930 38.462 17.51 11.51 33.00 3.01
403 404 6.764085 TGGTTTCACTTTTGTCGATAAGAGAA 59.236 34.615 17.51 13.79 31.93 2.87
404 405 6.285224 TGGTTTCACTTTTGTCGATAAGAGA 58.715 36.000 17.51 9.39 0.00 3.10
405 406 6.539649 TGGTTTCACTTTTGTCGATAAGAG 57.460 37.500 10.36 10.36 0.00 2.85
406 407 6.708502 TGATGGTTTCACTTTTGTCGATAAGA 59.291 34.615 10.62 0.00 0.00 2.10
407 408 6.898041 TGATGGTTTCACTTTTGTCGATAAG 58.102 36.000 0.00 0.00 0.00 1.73
408 409 6.869315 TGATGGTTTCACTTTTGTCGATAA 57.131 33.333 0.00 0.00 0.00 1.75
409 410 6.869315 TTGATGGTTTCACTTTTGTCGATA 57.131 33.333 0.00 0.00 32.84 2.92
410 411 5.766150 TTGATGGTTTCACTTTTGTCGAT 57.234 34.783 0.00 0.00 32.84 3.59
411 412 5.766150 ATTGATGGTTTCACTTTTGTCGA 57.234 34.783 0.00 0.00 32.84 4.20
412 413 5.115472 CGAATTGATGGTTTCACTTTTGTCG 59.885 40.000 0.00 0.00 32.84 4.35
413 414 5.977129 ACGAATTGATGGTTTCACTTTTGTC 59.023 36.000 0.00 0.00 32.84 3.18
414 415 5.748152 CACGAATTGATGGTTTCACTTTTGT 59.252 36.000 0.00 0.00 32.84 2.83
415 416 5.332506 GCACGAATTGATGGTTTCACTTTTG 60.333 40.000 0.00 0.00 32.84 2.44
416 417 4.744631 GCACGAATTGATGGTTTCACTTTT 59.255 37.500 0.00 0.00 32.84 2.27
417 418 4.298332 GCACGAATTGATGGTTTCACTTT 58.702 39.130 0.00 0.00 32.84 2.66
418 419 3.305335 GGCACGAATTGATGGTTTCACTT 60.305 43.478 0.00 0.00 32.84 3.16
419 420 2.228822 GGCACGAATTGATGGTTTCACT 59.771 45.455 0.00 0.00 32.84 3.41
420 421 2.228822 AGGCACGAATTGATGGTTTCAC 59.771 45.455 0.00 0.00 32.84 3.18
421 422 2.513753 AGGCACGAATTGATGGTTTCA 58.486 42.857 0.00 0.00 0.00 2.69
422 423 3.191371 AGAAGGCACGAATTGATGGTTTC 59.809 43.478 0.00 0.00 0.00 2.78
423 424 3.157087 AGAAGGCACGAATTGATGGTTT 58.843 40.909 0.00 0.00 0.00 3.27
424 425 2.795329 AGAAGGCACGAATTGATGGTT 58.205 42.857 0.00 0.00 0.00 3.67
425 426 2.496899 AGAAGGCACGAATTGATGGT 57.503 45.000 0.00 0.00 0.00 3.55
426 427 3.504863 CAAAGAAGGCACGAATTGATGG 58.495 45.455 0.00 0.00 0.00 3.51
427 428 3.504863 CCAAAGAAGGCACGAATTGATG 58.495 45.455 0.00 0.00 0.00 3.07
428 429 3.855689 CCAAAGAAGGCACGAATTGAT 57.144 42.857 0.00 0.00 0.00 2.57
439 440 2.751806 GAGTGGAATGAGCCAAAGAAGG 59.248 50.000 0.00 0.00 40.20 3.46
440 441 2.751806 GGAGTGGAATGAGCCAAAGAAG 59.248 50.000 0.00 0.00 40.20 2.85
441 442 2.376518 AGGAGTGGAATGAGCCAAAGAA 59.623 45.455 0.00 0.00 40.20 2.52
442 443 1.988107 AGGAGTGGAATGAGCCAAAGA 59.012 47.619 0.00 0.00 40.20 2.52
443 444 2.089980 CAGGAGTGGAATGAGCCAAAG 58.910 52.381 0.00 0.00 40.20 2.77
444 445 2.205022 CAGGAGTGGAATGAGCCAAA 57.795 50.000 0.00 0.00 40.20 3.28
445 446 3.963733 CAGGAGTGGAATGAGCCAA 57.036 52.632 0.00 0.00 40.20 4.52
455 456 1.517832 GATCACCGTCCAGGAGTGG 59.482 63.158 8.62 7.44 46.63 4.00
456 457 1.139734 CGATCACCGTCCAGGAGTG 59.860 63.158 2.86 2.86 45.00 3.51
457 458 1.001269 TCGATCACCGTCCAGGAGT 60.001 57.895 0.00 0.00 45.00 3.85
458 459 0.748367 TCTCGATCACCGTCCAGGAG 60.748 60.000 0.00 0.00 45.00 3.69
459 460 1.030488 GTCTCGATCACCGTCCAGGA 61.030 60.000 0.00 0.00 45.00 3.86
461 462 1.062685 CGTCTCGATCACCGTCCAG 59.937 63.158 0.00 0.00 39.75 3.86
462 463 1.239296 AACGTCTCGATCACCGTCCA 61.239 55.000 0.00 0.00 39.75 4.02
463 464 0.797249 CAACGTCTCGATCACCGTCC 60.797 60.000 0.00 0.00 39.75 4.79
464 465 0.109873 ACAACGTCTCGATCACCGTC 60.110 55.000 0.00 0.00 39.75 4.79
465 466 0.109873 GACAACGTCTCGATCACCGT 60.110 55.000 0.00 0.00 39.75 4.83
466 467 0.168348 AGACAACGTCTCGATCACCG 59.832 55.000 0.00 0.00 38.71 4.94
481 482 2.672961 CGGAGCCATTGTTAGAGACA 57.327 50.000 0.00 0.00 36.19 3.41
497 498 1.841302 AAGTCTCCAGCCAATGCGGA 61.841 55.000 0.00 0.00 44.33 5.54
498 499 1.372087 GAAGTCTCCAGCCAATGCGG 61.372 60.000 0.00 0.00 44.33 5.69
499 500 0.674581 TGAAGTCTCCAGCCAATGCG 60.675 55.000 0.00 0.00 44.33 4.73
500 501 1.760192 ATGAAGTCTCCAGCCAATGC 58.240 50.000 0.00 0.00 37.95 3.56
501 502 4.521146 ACTAATGAAGTCTCCAGCCAATG 58.479 43.478 0.00 0.00 30.33 2.82
502 503 4.851639 ACTAATGAAGTCTCCAGCCAAT 57.148 40.909 0.00 0.00 30.33 3.16
513 514 1.549170 AGGAACCGCGACTAATGAAGT 59.451 47.619 8.23 0.00 42.80 3.01
514 515 2.295253 AGGAACCGCGACTAATGAAG 57.705 50.000 8.23 0.00 0.00 3.02
515 516 2.492881 TGTAGGAACCGCGACTAATGAA 59.507 45.455 8.23 0.00 0.00 2.57
516 517 2.093890 TGTAGGAACCGCGACTAATGA 58.906 47.619 8.23 0.00 0.00 2.57
517 518 2.159282 ACTGTAGGAACCGCGACTAATG 60.159 50.000 8.23 3.83 0.00 1.90
518 519 2.097825 ACTGTAGGAACCGCGACTAAT 58.902 47.619 8.23 0.00 0.00 1.73
519 520 1.538047 ACTGTAGGAACCGCGACTAA 58.462 50.000 8.23 0.00 0.00 2.24
520 521 1.538047 AACTGTAGGAACCGCGACTA 58.462 50.000 8.23 1.27 0.00 2.59
521 522 0.677842 AAACTGTAGGAACCGCGACT 59.322 50.000 8.23 2.38 0.00 4.18
522 523 1.066136 GAAACTGTAGGAACCGCGAC 58.934 55.000 8.23 0.00 0.00 5.19
523 524 0.387622 CGAAACTGTAGGAACCGCGA 60.388 55.000 8.23 0.00 0.00 5.87
524 525 1.952266 GCGAAACTGTAGGAACCGCG 61.952 60.000 0.00 0.00 0.00 6.46
525 526 1.785951 GCGAAACTGTAGGAACCGC 59.214 57.895 0.00 0.00 0.00 5.68
526 527 0.387622 TCGCGAAACTGTAGGAACCG 60.388 55.000 6.20 0.00 0.00 4.44
527 528 1.066136 GTCGCGAAACTGTAGGAACC 58.934 55.000 12.06 0.00 0.00 3.62
528 529 2.061740 AGTCGCGAAACTGTAGGAAC 57.938 50.000 12.06 0.00 0.00 3.62
529 530 3.921119 TTAGTCGCGAAACTGTAGGAA 57.079 42.857 12.06 0.00 0.00 3.36
530 531 3.441222 TCATTAGTCGCGAAACTGTAGGA 59.559 43.478 12.06 2.89 0.00 2.94
531 532 3.766151 TCATTAGTCGCGAAACTGTAGG 58.234 45.455 12.06 0.36 0.00 3.18
532 533 3.791887 CCTCATTAGTCGCGAAACTGTAG 59.208 47.826 12.06 5.02 0.00 2.74
533 534 3.766151 CCTCATTAGTCGCGAAACTGTA 58.234 45.455 12.06 0.00 0.00 2.74
534 535 2.607187 CCTCATTAGTCGCGAAACTGT 58.393 47.619 12.06 0.00 0.00 3.55
535 536 1.324736 GCCTCATTAGTCGCGAAACTG 59.675 52.381 12.06 7.07 0.00 3.16
536 537 1.204941 AGCCTCATTAGTCGCGAAACT 59.795 47.619 12.06 8.26 0.00 2.66
537 538 1.324736 CAGCCTCATTAGTCGCGAAAC 59.675 52.381 12.06 0.00 0.00 2.78
538 539 1.640428 CAGCCTCATTAGTCGCGAAA 58.360 50.000 12.06 2.07 0.00 3.46
539 540 0.179111 CCAGCCTCATTAGTCGCGAA 60.179 55.000 12.06 0.00 0.00 4.70
540 541 1.035385 TCCAGCCTCATTAGTCGCGA 61.035 55.000 3.71 3.71 0.00 5.87
541 542 0.872021 GTCCAGCCTCATTAGTCGCG 60.872 60.000 0.00 0.00 0.00 5.87
542 543 0.872021 CGTCCAGCCTCATTAGTCGC 60.872 60.000 0.00 0.00 0.00 5.19
543 544 0.249073 CCGTCCAGCCTCATTAGTCG 60.249 60.000 0.00 0.00 0.00 4.18
544 545 1.112113 TCCGTCCAGCCTCATTAGTC 58.888 55.000 0.00 0.00 0.00 2.59
545 546 1.482593 CTTCCGTCCAGCCTCATTAGT 59.517 52.381 0.00 0.00 0.00 2.24
546 547 1.808133 GCTTCCGTCCAGCCTCATTAG 60.808 57.143 0.00 0.00 0.00 1.73
547 548 0.178068 GCTTCCGTCCAGCCTCATTA 59.822 55.000 0.00 0.00 0.00 1.90
548 549 1.078143 GCTTCCGTCCAGCCTCATT 60.078 57.895 0.00 0.00 0.00 2.57
549 550 2.586792 GCTTCCGTCCAGCCTCAT 59.413 61.111 0.00 0.00 0.00 2.90
554 555 0.606673 AAAAGAGGCTTCCGTCCAGC 60.607 55.000 0.00 0.00 36.45 4.85
555 556 1.807142 GAAAAAGAGGCTTCCGTCCAG 59.193 52.381 0.00 0.00 0.00 3.86
556 557 1.420138 AGAAAAAGAGGCTTCCGTCCA 59.580 47.619 0.00 0.00 0.00 4.02
557 558 2.186532 AGAAAAAGAGGCTTCCGTCC 57.813 50.000 0.00 0.00 0.00 4.79
558 559 3.927854 AGTAGAAAAAGAGGCTTCCGTC 58.072 45.455 0.00 0.00 0.00 4.79
559 560 4.527427 ACTAGTAGAAAAAGAGGCTTCCGT 59.473 41.667 3.59 0.00 0.00 4.69
560 561 5.074584 ACTAGTAGAAAAAGAGGCTTCCG 57.925 43.478 3.59 0.00 0.00 4.30
561 562 5.103687 CGACTAGTAGAAAAAGAGGCTTCC 58.896 45.833 3.59 0.00 0.00 3.46
562 563 5.801444 GTCGACTAGTAGAAAAAGAGGCTTC 59.199 44.000 8.70 0.00 0.00 3.86
563 564 5.243283 TGTCGACTAGTAGAAAAAGAGGCTT 59.757 40.000 17.92 0.00 0.00 4.35
564 565 4.765856 TGTCGACTAGTAGAAAAAGAGGCT 59.234 41.667 17.92 0.00 0.00 4.58
565 566 4.858140 GTGTCGACTAGTAGAAAAAGAGGC 59.142 45.833 17.92 0.00 0.00 4.70
566 567 5.087397 CGTGTCGACTAGTAGAAAAAGAGG 58.913 45.833 17.92 0.00 0.00 3.69
567 568 5.087397 CCGTGTCGACTAGTAGAAAAAGAG 58.913 45.833 17.92 0.00 0.00 2.85
568 569 4.614535 GCCGTGTCGACTAGTAGAAAAAGA 60.615 45.833 17.92 0.00 0.00 2.52
569 570 3.607209 GCCGTGTCGACTAGTAGAAAAAG 59.393 47.826 17.92 2.27 0.00 2.27
570 571 3.568538 GCCGTGTCGACTAGTAGAAAAA 58.431 45.455 17.92 0.00 0.00 1.94
571 572 2.413239 CGCCGTGTCGACTAGTAGAAAA 60.413 50.000 17.92 0.00 0.00 2.29
572 573 1.129251 CGCCGTGTCGACTAGTAGAAA 59.871 52.381 17.92 0.00 0.00 2.52
573 574 0.723414 CGCCGTGTCGACTAGTAGAA 59.277 55.000 17.92 0.00 0.00 2.10
574 575 1.086067 CCGCCGTGTCGACTAGTAGA 61.086 60.000 17.92 1.01 0.00 2.59
575 576 1.351012 CCGCCGTGTCGACTAGTAG 59.649 63.158 17.92 0.00 0.00 2.57
576 577 2.753966 GCCGCCGTGTCGACTAGTA 61.754 63.158 17.92 0.00 0.00 1.82
577 578 4.112341 GCCGCCGTGTCGACTAGT 62.112 66.667 17.92 0.00 0.00 2.57
608 609 3.665675 CTTTGAGGCGACCCGAGGG 62.666 68.421 6.63 6.63 42.03 4.30
609 610 2.125512 CTTTGAGGCGACCCGAGG 60.126 66.667 0.00 0.00 35.76 4.63
610 611 2.125512 CCTTTGAGGCGACCCGAG 60.126 66.667 0.00 0.00 35.76 4.63
611 612 2.602267 TCCTTTGAGGCGACCCGA 60.602 61.111 0.00 0.00 34.61 5.14
612 613 2.125512 CTCCTTTGAGGCGACCCG 60.126 66.667 0.00 0.00 34.61 5.28
620 621 0.734253 CTCGTGTCGCCTCCTTTGAG 60.734 60.000 0.00 0.00 38.42 3.02
621 622 1.289066 CTCGTGTCGCCTCCTTTGA 59.711 57.895 0.00 0.00 0.00 2.69
622 623 1.738099 CCTCGTGTCGCCTCCTTTG 60.738 63.158 0.00 0.00 0.00 2.77
623 624 2.657237 CCTCGTGTCGCCTCCTTT 59.343 61.111 0.00 0.00 0.00 3.11
624 625 3.382832 CCCTCGTGTCGCCTCCTT 61.383 66.667 0.00 0.00 0.00 3.36
647 648 1.420138 TGAGAGTTGAACAGAACCCCC 59.580 52.381 0.00 0.00 0.00 5.40
648 649 2.104963 AGTGAGAGTTGAACAGAACCCC 59.895 50.000 0.00 0.00 0.00 4.95
649 650 3.477210 AGTGAGAGTTGAACAGAACCC 57.523 47.619 0.00 0.00 0.00 4.11
650 651 7.873505 ACTAATTAGTGAGAGTTGAACAGAACC 59.126 37.037 17.35 0.00 34.72 3.62
651 652 8.819643 ACTAATTAGTGAGAGTTGAACAGAAC 57.180 34.615 17.35 0.00 34.72 3.01
654 655 9.915629 ACTTACTAATTAGTGAGAGTTGAACAG 57.084 33.333 32.64 12.28 41.03 3.16
992 1026 1.424493 CCTCGACGCCATCTTGCTTC 61.424 60.000 0.00 0.00 0.00 3.86
1122 1202 1.690219 CCCTCACCATCTCCTTCCGG 61.690 65.000 0.00 0.00 0.00 5.14
1123 1203 1.826024 CCCTCACCATCTCCTTCCG 59.174 63.158 0.00 0.00 0.00 4.30
1219 1299 2.984471 GACAGACAACATGCATGCAAAG 59.016 45.455 26.68 21.93 0.00 2.77
1246 1328 1.227704 CCGCACACAACAGGGTACA 60.228 57.895 0.00 0.00 0.00 2.90
1755 1869 0.108424 CGGAGAAGGAGAAGCAGTGG 60.108 60.000 0.00 0.00 0.00 4.00
2312 2463 4.380867 GGAGGTGGCAATATCAAAGTGTTG 60.381 45.833 0.00 0.00 35.95 3.33
2362 2513 9.444600 AAAACTAGTAACCGTGACATGAATAAT 57.555 29.630 0.00 0.00 0.00 1.28
2363 2514 8.714179 CAAAACTAGTAACCGTGACATGAATAA 58.286 33.333 0.00 0.00 0.00 1.40
2364 2515 7.874016 ACAAAACTAGTAACCGTGACATGAATA 59.126 33.333 0.00 0.00 0.00 1.75
2546 2711 4.250116 TGCCGCAAAATTTGATAGTTGT 57.750 36.364 10.26 0.00 0.00 3.32
2627 4585 9.052759 ACTTGGTTTTTACAGATACACAACTAG 57.947 33.333 0.00 0.00 0.00 2.57
2643 4610 2.758736 TGCTTGTGCACTTGGTTTTT 57.241 40.000 19.41 0.00 45.31 1.94
2688 4655 1.404748 GACTTACACCTAGACGGAGGC 59.595 57.143 0.00 0.00 40.65 4.70
2711 4680 1.663643 GATCGCGATGCACAACCTTAA 59.336 47.619 29.09 0.00 0.00 1.85
2811 4785 4.395231 TGACTCGAGACTATCAAACACGAT 59.605 41.667 21.68 0.00 0.00 3.73
2821 4810 5.330455 TGCTTTCAATGACTCGAGACTAT 57.670 39.130 21.68 7.21 0.00 2.12
2862 4851 9.083422 TGACACAAATAAAGGAATCAACCAATA 57.917 29.630 0.00 0.00 0.00 1.90
2863 4852 7.961351 TGACACAAATAAAGGAATCAACCAAT 58.039 30.769 0.00 0.00 0.00 3.16
2883 4874 5.516339 CACATGGTTTCTTGTTTCTTGACAC 59.484 40.000 0.00 0.00 0.00 3.67
2902 4893 2.746904 TCGGTGCATTAACTTCCACATG 59.253 45.455 0.00 0.00 0.00 3.21
2923 4914 9.309224 ACCAAATAATCTAAAAACACTTAGGCT 57.691 29.630 0.00 0.00 31.02 4.58
2953 4944 7.012799 GCGTCTAGGTGTATAAGTTACCTTAGT 59.987 40.741 0.41 0.00 41.93 2.24
2961 4952 3.282021 TCCGCGTCTAGGTGTATAAGTT 58.718 45.455 4.92 0.00 0.00 2.66
3038 5030 6.186957 TCAAATGCACCCTAATGAACAGTAT 58.813 36.000 0.00 0.00 0.00 2.12
3113 5105 1.840635 ACTAAGGAGGCCTCACATTCC 59.159 52.381 33.29 16.62 30.89 3.01
3118 5110 2.306219 AGGAAAACTAAGGAGGCCTCAC 59.694 50.000 33.29 22.02 30.89 3.51
3119 5111 2.572104 GAGGAAAACTAAGGAGGCCTCA 59.428 50.000 33.29 13.14 40.05 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.