AutoCloner

Multiple sequence alignment - TraesCS1B01G329800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G329800	chr1B	100.000	2297	0	0	1	2297	555860679	555862975	0.000000e+00	4242.0
1	TraesCS1B01G329800	chr2B	85.890	2360	257	32	3	2297	396951897	396949549	0.000000e+00	2444.0
2	TraesCS1B01G329800	chr1D	85.576	2378	250	38	3	2297	77847944	77845577	0.000000e+00	2405.0
3	TraesCS1B01G329800	chr7D	85.486	2377	256	35	3	2297	13893361	13890992	0.000000e+00	2396.0
4	TraesCS1B01G329800	chr7D	85.295	2319	254	38	58	2297	48274623	48272313	0.000000e+00	2313.0
5	TraesCS1B01G329800	chr3A	85.917	2045	223	35	312	2297	23212260	23214298	0.000000e+00	2121.0
6	TraesCS1B01G329800	chr3A	85.483	1791	206	26	3	1742	467880800	467882587	0.000000e+00	1818.0
7	TraesCS1B01G329800	chr3A	83.587	591	66	13	1738	2297	467891154	467891744	2.020000e-145	525.0
8	TraesCS1B01G329800	chr6A	85.940	1835	211	30	504	2297	606063483	606065311	0.000000e+00	1916.0
9	TraesCS1B01G329800	chr6B	83.980	2010	271	17	3	1962	279017008	279019016	0.000000e+00	1881.0
10	TraesCS1B01G329800	chr4B	82.906	1989	293	38	1	1967	135091432	135089469	0.000000e+00	1746.0
11	TraesCS1B01G329800	chr6D	86.639	1422	171	14	556	1966	19507153	19505740	0.000000e+00	1555.0
12	TraesCS1B01G329800	chr6D	82.810	605	59	12	3	562	19516518	19515914	1.230000e-137	499.0
13	TraesCS1B01G329800	chr6D	89.458	332	35	0	1966	2297	19505710	19505379	9.810000e-114	420.0
14	TraesCS1B01G329800	chr2D	89.615	1040	85	17	3	1021	427554761	427555798	0.000000e+00	1301.0
15	TraesCS1B01G329800	chr2D	92.988	328	23	0	1970	2297	427565347	427565674	1.600000e-131	479.0
16	TraesCS1B01G329800	chr1A	85.268	224	32	1	168	390	245515274	245515051	1.770000e-56	230.0
17	TraesCS1B01G329800	chr1A	83.654	104	13	4	58	158	245515413	245515311	6.760000e-16	95.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G329800	chr1B	555860679	555862975	2296	False	4242.0	4242	100.0000	1	2297	1	chr1B.!!$F1	2296
1	TraesCS1B01G329800	chr2B	396949549	396951897	2348	True	2444.0	2444	85.8900	3	2297	1	chr2B.!!$R1	2294
2	TraesCS1B01G329800	chr1D	77845577	77847944	2367	True	2405.0	2405	85.5760	3	2297	1	chr1D.!!$R1	2294
3	TraesCS1B01G329800	chr7D	13890992	13893361	2369	True	2396.0	2396	85.4860	3	2297	1	chr7D.!!$R1	2294
4	TraesCS1B01G329800	chr7D	48272313	48274623	2310	True	2313.0	2313	85.2950	58	2297	1	chr7D.!!$R2	2239
5	TraesCS1B01G329800	chr3A	23212260	23214298	2038	False	2121.0	2121	85.9170	312	2297	1	chr3A.!!$F1	1985
6	TraesCS1B01G329800	chr3A	467880800	467882587	1787	False	1818.0	1818	85.4830	3	1742	1	chr3A.!!$F2	1739
7	TraesCS1B01G329800	chr3A	467891154	467891744	590	False	525.0	525	83.5870	1738	2297	1	chr3A.!!$F3	559
8	TraesCS1B01G329800	chr6A	606063483	606065311	1828	False	1916.0	1916	85.9400	504	2297	1	chr6A.!!$F1	1793
9	TraesCS1B01G329800	chr6B	279017008	279019016	2008	False	1881.0	1881	83.9800	3	1962	1	chr6B.!!$F1	1959
10	TraesCS1B01G329800	chr4B	135089469	135091432	1963	True	1746.0	1746	82.9060	1	1967	1	chr4B.!!$R1	1966
11	TraesCS1B01G329800	chr6D	19505379	19507153	1774	True	987.5	1555	88.0485	556	2297	2	chr6D.!!$R2	1741
12	TraesCS1B01G329800	chr6D	19515914	19516518	604	True	499.0	499	82.8100	3	562	1	chr6D.!!$R1	559
13	TraesCS1B01G329800	chr2D	427554761	427555798	1037	False	1301.0	1301	89.6150	3	1021	1	chr2D.!!$F1	1018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
40	41	0.178944	TCCTCCACCACTTCTCGGAA	60.179	55.0	0.0	0.0	0.0	4.30	F
478	539	0.400213	AAGATCTGCGTCCCCAACAA	59.600	50.0	0.0	0.0	0.0	2.83	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1125	1188	0.109412	CGGGTCCGTTGACAGTAGAC	60.109	60.0	0.55	0.0	43.65	2.59	R
1406	1476	0.612174	TCACTTCCCTCCCGACTGAG	60.612	60.0	0.00	0.0	0.00	3.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	37	1.190643	CTCCTCCTCCACCACTTCTC	58.809	60.000	0.00	0.00	0.00	2.87
40	41	0.178944	TCCTCCACCACTTCTCGGAA	60.179	55.000	0.00	0.00	0.00	4.30
43	44	0.832135	TCCACCACTTCTCGGAAGCT	60.832	55.000	11.97	0.00	0.00	3.74
55	56	0.902531	CGGAAGCTCCTAGGGTTTCA	59.097	55.000	20.42	0.00	33.30	2.69
91	92	0.947180	CGTCGTTCGTTTGGTGGGAT	60.947	55.000	0.00	0.00	34.52	3.85
94	95	0.887387	CGTTCGTTTGGTGGGATGGT	60.887	55.000	0.00	0.00	0.00	3.55
100	101	0.780637	TTTGGTGGGATGGTAAGGCA	59.219	50.000	0.00	0.00	0.00	4.75
119	120	2.757950	GCAGGAGGAGACCATAGATCCA	60.758	54.545	0.00	0.00	35.45	3.41
120	121	2.896685	CAGGAGGAGACCATAGATCCAC	59.103	54.545	0.00	0.00	35.45	4.02
154	158	4.379243	CCACCAAGCGCGAGTCCT	62.379	66.667	12.10	0.00	0.00	3.85
164	168	2.037367	CGAGTCCTCCCACTCCCA	59.963	66.667	0.00	0.00	39.90	4.37
165	169	1.381872	CGAGTCCTCCCACTCCCAT	60.382	63.158	0.00	0.00	39.90	4.00
281	320	1.958715	CAACATGGTGTGGACGCGA	60.959	57.895	15.93	0.00	0.00	5.87
282	321	1.959226	AACATGGTGTGGACGCGAC	60.959	57.895	15.93	6.56	0.00	5.19
300	339	0.478072	ACACATCAAGGAAGGTGGCA	59.522	50.000	0.00	0.00	35.62	4.92
301	340	1.076024	ACACATCAAGGAAGGTGGCAT	59.924	47.619	0.00	0.00	35.62	4.40
349	389	1.153489	GCTGCCAGATCGAGCAAGA	60.153	57.895	2.38	0.00	38.82	3.02
390	430	4.819761	GCAGAGCGATGGCCGTCA	62.820	66.667	24.56	0.00	41.24	4.35
399	439	0.600557	GATGGCCGTCAGATCGAGAT	59.399	55.000	20.55	0.00	0.00	2.75
420	460	2.330041	GGGCGACAACAACAACCG	59.670	61.111	0.00	0.00	0.00	4.44
478	539	0.400213	AAGATCTGCGTCCCCAACAA	59.600	50.000	0.00	0.00	0.00	2.83
500	561	0.537143	TGCACGCCCTCAACAAGATT	60.537	50.000	0.00	0.00	0.00	2.40
522	583	5.414789	TGTCGTCATCCAATTCTAGGAAA	57.585	39.130	0.00	0.00	38.93	3.13
545	606	1.000896	AATGCCACCCCACTAGTGC	60.001	57.895	17.86	5.50	33.75	4.40
682	743	3.909732	TGTTCTTCCTTGGGAATGTGTT	58.090	40.909	0.00	0.00	41.23	3.32
800	863	2.037641	TGATCATTGTGATAGAGGGGCG	59.962	50.000	0.00	0.00	37.20	6.13
801	864	0.758734	TCATTGTGATAGAGGGGCGG	59.241	55.000	0.00	0.00	0.00	6.13
839	902	5.416952	AGTTGGAGGAGTTCTTTAATGCATG	59.583	40.000	0.00	0.00	0.00	4.06
864	927	6.478344	GCATTAACACAAACTGGAAATGTTCA	59.522	34.615	0.00	0.00	35.26	3.18
899	962	5.765510	TGGGCTTAATACCTTTGTCATGAT	58.234	37.500	0.00	0.00	0.00	2.45
932	995	2.489971	CAGGGACGTTGACAAAGCTTA	58.510	47.619	0.00	0.00	0.00	3.09
984	1047	1.282157	GGGGCTGTGGTGAGTCTTAAT	59.718	52.381	0.00	0.00	0.00	1.40
1028	1091	3.824443	GCCAAGGGTGTACTTAACATTGT	59.176	43.478	0.00	0.00	41.10	2.71
1125	1188	7.707035	GTGGGTGTAACTCTAGACATTGATAAG	59.293	40.741	0.00	0.00	38.97	1.73
1138	1201	7.030165	AGACATTGATAAGTCTACTGTCAACG	58.970	38.462	11.25	7.69	42.92	4.10
1158	1221	1.753463	ACCCGAGTCGGTCAGGATC	60.753	63.158	28.98	0.00	46.80	3.36
1209	1272	0.691078	CAGCTAAGGCAGAGGGGGTA	60.691	60.000	0.00	0.00	41.70	3.69
1254	1317	9.780413	GATTTCTTCTATTCAGTGGACAAAATC	57.220	33.333	0.00	0.00	29.48	2.17
1285	1348	9.961264	TTAAAAATACCCCAAAAGAAAAAGTGT	57.039	25.926	0.00	0.00	0.00	3.55
1303	1366	4.033709	AGTGTCAGTACCTTAGGATGCAT	58.966	43.478	4.77	0.00	0.00	3.96
1337	1401	4.100808	GTCACCCAAGAGAGCTAGAATCAT	59.899	45.833	0.00	0.00	0.00	2.45
1340	1404	4.837860	ACCCAAGAGAGCTAGAATCATAGG	59.162	45.833	0.00	0.00	0.00	2.57
1359	1423	9.881773	ATCATAGGAAATATACAAAATGGTGGT	57.118	29.630	0.00	0.00	0.00	4.16
1360	1424	9.707957	TCATAGGAAATATACAAAATGGTGGTT	57.292	29.630	0.00	0.00	0.00	3.67
1365	1430	7.562088	GGAAATATACAAAATGGTGGTTAGGGA	59.438	37.037	0.00	0.00	0.00	4.20
1368	1438	3.496331	ACAAAATGGTGGTTAGGGAGTG	58.504	45.455	0.00	0.00	0.00	3.51
1376	1446	1.203313	TGGTTAGGGAGTGCCTCTTCT	60.203	52.381	6.41	0.00	0.00	2.85
1380	1450	1.859302	AGGGAGTGCCTCTTCTACTG	58.141	55.000	0.00	0.00	0.00	2.74
1389	1459	2.158885	GCCTCTTCTACTGTGGGGAATC	60.159	54.545	0.00	0.00	0.00	2.52
1403	1473	1.004745	GGGAATCTTTCTGCTCCACCA	59.995	52.381	0.00	0.00	0.00	4.17
1406	1476	3.057245	GGAATCTTTCTGCTCCACCAAAC	60.057	47.826	0.00	0.00	0.00	2.93
1412	1482	1.070758	TCTGCTCCACCAAACTCAGTC	59.929	52.381	0.00	0.00	0.00	3.51
1448	1518	2.340210	TGCCTGCTGTAACAGAAACA	57.660	45.000	0.00	0.00	40.25	2.83
1497	1569	6.410942	AAAACAAAGGGAAAATGAGGAGAG	57.589	37.500	0.00	0.00	0.00	3.20
1528	1600	3.517500	AGGAGGAAAGTGAGGAGATTGAC	59.482	47.826	0.00	0.00	0.00	3.18
1537	1609	4.713814	AGTGAGGAGATTGACAATGAGCTA	59.286	41.667	5.14	0.00	0.00	3.32
1661	1744	5.030147	AGATCATACCCAGTGTTCCACTTA	58.970	41.667	0.00	0.00	42.59	2.24
1701	1785	2.345760	GGATGCTGTGTTGGGGCAG	61.346	63.158	0.00	0.00	39.38	4.85
1719	1803	4.010349	GGCAGCCTTATGTTACTGAACTT	58.990	43.478	3.29	0.00	36.45	2.66
1764	1852	2.875672	GCAAGTGCCCTCATTGTACTCA	60.876	50.000	0.00	0.00	34.31	3.41
1836	1924	7.728981	CCTACTCTACCTATGGTGGAAGAAATA	59.271	40.741	4.46	0.00	42.42	1.40
1842	1930	7.213178	ACCTATGGTGGAAGAAATACAGATT	57.787	36.000	0.00	0.00	32.98	2.40
1941	2029	7.556275	AGAAGTCTTCAAGGTAATGAAACAACA	59.444	33.333	14.97	0.00	38.75	3.33
1955	2043	8.606040	AATGAAACAACACCTAATTCCAATTG	57.394	30.769	0.00	0.00	0.00	2.32
1963	2051	7.360113	ACACCTAATTCCAATTGTTTTGAGT	57.640	32.000	4.43	0.00	0.00	3.41
1967	2055	8.482128	ACCTAATTCCAATTGTTTTGAGTTTCA	58.518	29.630	4.43	0.00	0.00	2.69
1976	2095	4.277476	TGTTTTGAGTTTCAGTGATGGGT	58.723	39.130	0.00	0.00	0.00	4.51
1979	2098	3.576078	TGAGTTTCAGTGATGGGTGTT	57.424	42.857	0.00	0.00	0.00	3.32
1982	2101	3.214328	AGTTTCAGTGATGGGTGTTGAC	58.786	45.455	0.00	0.00	0.00	3.18
1985	2104	3.507162	TCAGTGATGGGTGTTGACATT	57.493	42.857	0.00	0.00	0.00	2.71
2036	2155	8.868522	ATGTGATTAGAGAACTGGAAAAATCA	57.131	30.769	0.00	0.00	31.41	2.57
2061	2180	6.287525	AGAGCCAATATAGCTGAGAAAACTC	58.712	40.000	4.96	0.00	41.75	3.01
2157	2276	0.178876	TTGGGTGAGGGATGGTGAGA	60.179	55.000	0.00	0.00	0.00	3.27
2159	2278	1.216990	GGGTGAGGGATGGTGAGATT	58.783	55.000	0.00	0.00	0.00	2.40
2179	2298	8.470805	TGAGATTGATGAAGAGGAGTTTACTAC	58.529	37.037	0.00	0.00	0.00	2.73
2201	2320	9.181061	ACTACTGTTAGATCTAGAAGGAAAGAC	57.819	37.037	14.79	4.31	0.00	3.01
2222	2341	8.608844	AAGACAAGAAGAAGGTTAATGTAGTG	57.391	34.615	0.00	0.00	0.00	2.74
2233	2352	8.472007	AAGGTTAATGTAGTGATTTCCAAACA	57.528	30.769	0.00	0.00	0.00	2.83
2275	2394	4.989279	ACAAAGTGTCTTTTGATGCTGT	57.011	36.364	5.58	0.00	39.79	4.40
2290	2409	0.955428	GCTGTTTCGACCATGCCTCA	60.955	55.000	0.00	0.00	0.00	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	37	0.902531	TGAAACCCTAGGAGCTTCCG	59.097	55.000	11.48	0.00	42.75	4.30
40	41	0.036294	GCGTTGAAACCCTAGGAGCT	60.036	55.000	11.48	0.00	0.00	4.09
43	44	1.829222	CTAGGCGTTGAAACCCTAGGA	59.171	52.381	11.48	0.00	41.38	2.94
91	92	0.617820	GGTCTCCTCCTGCCTTACCA	60.618	60.000	0.00	0.00	0.00	3.25
94	95	2.518407	TCTATGGTCTCCTCCTGCCTTA	59.482	50.000	0.00	0.00	0.00	2.69
100	101	2.158234	GGTGGATCTATGGTCTCCTCCT	60.158	54.545	11.51	0.00	38.89	3.69
119	120	3.005539	AGATGCAGCGACCTGGGT	61.006	61.111	0.00	0.00	39.54	4.51
120	121	2.202987	GAGATGCAGCGACCTGGG	60.203	66.667	0.00	0.00	39.54	4.45
281	320	0.478072	TGCCACCTTCCTTGATGTGT	59.522	50.000	0.00	0.00	0.00	3.72
282	321	1.475280	CATGCCACCTTCCTTGATGTG	59.525	52.381	0.00	0.00	0.00	3.21
390	430	1.455773	TCGCCCCACATCTCGATCT	60.456	57.895	0.00	0.00	0.00	2.75
399	439	1.378646	TTGTTGTTGTCGCCCCACA	60.379	52.632	0.00	0.00	0.00	4.17
420	460	1.226717	CTCGTAGTCGCCTTGCCTC	60.227	63.158	0.00	0.00	36.96	4.70
478	539	0.957395	CTTGTTGAGGGCGTGCATCT	60.957	55.000	0.00	0.00	0.00	2.90
500	561	5.414789	TTTCCTAGAATTGGATGACGACA	57.585	39.130	0.00	0.00	33.09	4.35
522	583	1.005924	CTAGTGGGGTGGCATTCCTTT	59.994	52.381	9.83	2.34	0.00	3.11
545	606	2.639286	GCAAACCTCAGCACCACG	59.361	61.111	0.00	0.00	0.00	4.94
682	743	3.998913	TGAAATCCACACATAGGAGCA	57.001	42.857	0.00	0.00	38.83	4.26
785	848	2.742116	GCCCGCCCCTCTATCACAA	61.742	63.158	0.00	0.00	0.00	3.33
800	863	3.273788	AACTGCCTGCCACTAGCCC	62.274	63.158	0.00	0.00	42.71	5.19
801	864	2.042831	CAACTGCCTGCCACTAGCC	61.043	63.158	0.00	0.00	42.71	3.93
839	902	6.478344	TGAACATTTCCAGTTTGTGTTAATGC	59.522	34.615	0.00	0.00	33.55	3.56
864	927	4.899352	ATTAAGCCCAATCGATCTAGCT	57.101	40.909	0.00	4.17	0.00	3.32
899	962	1.557832	CGTCCCTGGGTGAAGGAAATA	59.442	52.381	13.56	0.00	40.02	1.40
984	1047	5.376625	GCACCCATAGATTCAGACCATTTA	58.623	41.667	0.00	0.00	0.00	1.40
1000	1063	1.140134	AGTACACCCTTGGCACCCAT	61.140	55.000	0.00	0.00	31.53	4.00
1125	1188	0.109412	CGGGTCCGTTGACAGTAGAC	60.109	60.000	0.55	0.00	43.65	2.59
1158	1221	3.438087	CAGCATCTCTACAACCCAGTTTG	59.562	47.826	0.00	0.00	0.00	2.93
1254	1317	8.966069	TTTCTTTTGGGGTATTTTTAACAAGG	57.034	30.769	0.00	0.00	0.00	3.61
1285	1348	5.070446	CCTTGTATGCATCCTAAGGTACTGA	59.930	44.000	20.32	0.79	40.86	3.41
1337	1401	9.635404	CCTAACCACCATTTTGTATATTTCCTA	57.365	33.333	0.00	0.00	0.00	2.94
1340	1404	8.528044	TCCCTAACCACCATTTTGTATATTTC	57.472	34.615	0.00	0.00	0.00	2.17
1368	1438	1.276622	TTCCCCACAGTAGAAGAGGC	58.723	55.000	0.00	0.00	0.00	4.70
1376	1446	2.912956	AGCAGAAAGATTCCCCACAGTA	59.087	45.455	0.00	0.00	0.00	2.74
1380	1450	1.004745	TGGAGCAGAAAGATTCCCCAC	59.995	52.381	0.00	0.00	0.00	4.61
1389	1459	2.551459	CTGAGTTTGGTGGAGCAGAAAG	59.449	50.000	0.00	0.00	0.00	2.62
1403	1473	0.977395	CTTCCCTCCCGACTGAGTTT	59.023	55.000	0.00	0.00	0.00	2.66
1406	1476	0.612174	TCACTTCCCTCCCGACTGAG	60.612	60.000	0.00	0.00	0.00	3.35
1412	1482	1.026718	GCATGTTCACTTCCCTCCCG	61.027	60.000	0.00	0.00	0.00	5.14
1448	1518	4.404715	CCAGCATCATTTTCCTCTTCCAAT	59.595	41.667	0.00	0.00	0.00	3.16
1497	1569	3.426615	TCACTTTCCTCCTCAGAGAGAC	58.573	50.000	0.00	0.00	43.39	3.36
1528	1600	9.102757	ACAATAGTGTCAATAAGTAGCTCATTG	57.897	33.333	0.00	0.00	29.49	2.82
1537	1609	7.744087	TTCAGCAACAATAGTGTCAATAAGT	57.256	32.000	0.00	0.00	36.80	2.24
1624	1707	6.183361	TGGGTATGATCTGCATAGAATTCACA	60.183	38.462	8.44	0.00	40.04	3.58
1701	1785	6.037610	CAGGATCAAGTTCAGTAACATAAGGC	59.962	42.308	0.00	0.00	38.12	4.35
1719	1803	6.675413	TGACATGATACATCATCAGGATCA	57.325	37.500	0.00	0.00	46.20	2.92
1764	1852	4.141756	CCAGAAGTATCAGGAGATTGCACT	60.142	45.833	0.00	0.00	34.23	4.40
1817	1905	7.931015	ATCTGTATTTCTTCCACCATAGGTA	57.069	36.000	0.00	0.00	32.11	3.08
1836	1924	7.009179	TGTTCTTTGACTCATCCTAATCTGT	57.991	36.000	0.00	0.00	0.00	3.41
1842	1930	5.071788	ACCAGTTGTTCTTTGACTCATCCTA	59.928	40.000	0.00	0.00	0.00	2.94
1919	2007	6.039382	AGGTGTTGTTTCATTACCTTGAAGAC	59.961	38.462	0.00	0.00	38.56	3.01
1941	2029	8.482128	TGAAACTCAAAACAATTGGAATTAGGT	58.518	29.630	10.83	0.00	0.00	3.08
1955	2043	4.097892	ACACCCATCACTGAAACTCAAAAC	59.902	41.667	0.00	0.00	0.00	2.43
1963	2051	3.289407	TGTCAACACCCATCACTGAAA	57.711	42.857	0.00	0.00	0.00	2.69
1967	2055	2.376518	AGGAATGTCAACACCCATCACT	59.623	45.455	6.28	0.00	0.00	3.41
1976	2095	5.850557	AATTGTTGTCAGGAATGTCAACA	57.149	34.783	14.17	14.17	45.04	3.33
1979	2098	7.068103	ACAGTAAAATTGTTGTCAGGAATGTCA	59.932	33.333	0.00	0.00	0.00	3.58
1982	2101	8.064447	CAACAGTAAAATTGTTGTCAGGAATG	57.936	34.615	9.34	0.00	46.37	2.67
2007	2126	7.672983	TTTCCAGTTCTCTAATCACATCAAC	57.327	36.000	0.00	0.00	0.00	3.18
2036	2155	6.657875	AGTTTTCTCAGCTATATTGGCTCTT	58.342	36.000	0.00	0.00	38.03	2.85
2088	2207	6.145371	CCAACAGCATTGGTAATAAACAACAC	59.855	38.462	10.82	0.00	34.92	3.32
2123	2242	6.423182	CCTCACCCAATCTGTATTTAAAGGA	58.577	40.000	0.00	0.00	0.00	3.36
2127	2246	6.364701	CATCCCTCACCCAATCTGTATTTAA	58.635	40.000	0.00	0.00	0.00	1.52
2157	2276	8.140112	ACAGTAGTAAACTCCTCTTCATCAAT	57.860	34.615	0.00	0.00	35.76	2.57
2159	2278	7.540474	AACAGTAGTAAACTCCTCTTCATCA	57.460	36.000	0.00	0.00	35.76	3.07
2179	2298	8.744652	TCTTGTCTTTCCTTCTAGATCTAACAG	58.255	37.037	3.57	2.70	0.00	3.16
2198	2317	7.963532	TCACTACATTAACCTTCTTCTTGTCT	58.036	34.615	0.00	0.00	0.00	3.41
2222	2341	7.440523	ACTTCTAGTCACATGTTTGGAAATC	57.559	36.000	0.00	0.00	0.00	2.17

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.