Multiple sequence alignment - TraesCS1B01G328100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G328100 chr1B 100.000 2549 0 0 1 2549 554736496 554733948 0.000000e+00 4708
1 TraesCS1B01G328100 chr1B 93.738 2012 52 8 566 2549 645321430 645323395 0.000000e+00 2950
2 TraesCS1B01G328100 chr6A 97.851 2001 19 2 572 2549 616131295 616133294 0.000000e+00 3435
3 TraesCS1B01G328100 chr6A 80.672 357 51 4 28 375 409765442 409765095 6.990000e-66 261
4 TraesCS1B01G328100 chr2B 97.851 2001 19 2 572 2549 781094240 781096239 0.000000e+00 3435
5 TraesCS1B01G328100 chr2B 97.751 2001 21 2 572 2549 776222961 776224960 0.000000e+00 3424
6 TraesCS1B01G328100 chr5B 97.470 2016 27 2 558 2549 641128795 641126780 0.000000e+00 3419
7 TraesCS1B01G328100 chr4B 97.701 2001 22 2 572 2549 368430368 368428369 0.000000e+00 3419
8 TraesCS1B01G328100 chr7A 97.514 2011 25 3 563 2549 39015357 39017366 0.000000e+00 3413
9 TraesCS1B01G328100 chr4A 97.560 2008 23 4 565 2549 690993557 690995561 0.000000e+00 3413
10 TraesCS1B01G328100 chr3A 97.652 2002 22 2 571 2549 54951916 54953915 0.000000e+00 3413
11 TraesCS1B01G328100 chrUn 97.502 2002 21 4 573 2549 175762113 175764110 0.000000e+00 3393
12 TraesCS1B01G328100 chrUn 97.399 1999 24 4 574 2549 231572793 231574786 0.000000e+00 3378
13 TraesCS1B01G328100 chrUn 97.251 2001 24 9 573 2549 43129528 43127535 0.000000e+00 3362
14 TraesCS1B01G328100 chrUn 96.919 1980 56 4 573 2549 87140327 87142304 0.000000e+00 3314
15 TraesCS1B01G328100 chrUn 97.649 1659 15 2 914 2549 284635182 284636839 0.000000e+00 2826
16 TraesCS1B01G328100 chr1A 93.514 370 22 2 1 370 508123611 508123244 1.330000e-152 549
17 TraesCS1B01G328100 chr1A 87.059 170 14 2 411 572 508123159 508122990 4.330000e-43 185
18 TraesCS1B01G328100 chr7D 82.906 351 48 4 28 375 36487121 36487462 3.190000e-79 305
19 TraesCS1B01G328100 chr6D 79.882 338 58 6 29 365 19685560 19685888 3.280000e-59 239
20 TraesCS1B01G328100 chr1D 93.617 141 8 1 430 570 411534438 411534299 2.570000e-50 209
21 TraesCS1B01G328100 chr1D 97.000 100 3 0 1 100 411535958 411535859 4.360000e-38 169
22 TraesCS1B01G328100 chr1D 97.619 84 2 0 101 184 411534983 411534900 7.350000e-31 145
23 TraesCS1B01G328100 chr1D 89.157 83 3 1 329 405 411534520 411534438 5.800000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G328100 chr1B 554733948 554736496 2548 True 4708 4708 100.0000 1 2549 1 chr1B.!!$R1 2548
1 TraesCS1B01G328100 chr1B 645321430 645323395 1965 False 2950 2950 93.7380 566 2549 1 chr1B.!!$F1 1983
2 TraesCS1B01G328100 chr6A 616131295 616133294 1999 False 3435 3435 97.8510 572 2549 1 chr6A.!!$F1 1977
3 TraesCS1B01G328100 chr2B 781094240 781096239 1999 False 3435 3435 97.8510 572 2549 1 chr2B.!!$F2 1977
4 TraesCS1B01G328100 chr2B 776222961 776224960 1999 False 3424 3424 97.7510 572 2549 1 chr2B.!!$F1 1977
5 TraesCS1B01G328100 chr5B 641126780 641128795 2015 True 3419 3419 97.4700 558 2549 1 chr5B.!!$R1 1991
6 TraesCS1B01G328100 chr4B 368428369 368430368 1999 True 3419 3419 97.7010 572 2549 1 chr4B.!!$R1 1977
7 TraesCS1B01G328100 chr7A 39015357 39017366 2009 False 3413 3413 97.5140 563 2549 1 chr7A.!!$F1 1986
8 TraesCS1B01G328100 chr4A 690993557 690995561 2004 False 3413 3413 97.5600 565 2549 1 chr4A.!!$F1 1984
9 TraesCS1B01G328100 chr3A 54951916 54953915 1999 False 3413 3413 97.6520 571 2549 1 chr3A.!!$F1 1978
10 TraesCS1B01G328100 chrUn 175762113 175764110 1997 False 3393 3393 97.5020 573 2549 1 chrUn.!!$F2 1976
11 TraesCS1B01G328100 chrUn 231572793 231574786 1993 False 3378 3378 97.3990 574 2549 1 chrUn.!!$F3 1975
12 TraesCS1B01G328100 chrUn 43127535 43129528 1993 True 3362 3362 97.2510 573 2549 1 chrUn.!!$R1 1976
13 TraesCS1B01G328100 chrUn 87140327 87142304 1977 False 3314 3314 96.9190 573 2549 1 chrUn.!!$F1 1976
14 TraesCS1B01G328100 chrUn 284635182 284636839 1657 False 2826 2826 97.6490 914 2549 1 chrUn.!!$F4 1635
15 TraesCS1B01G328100 chr1A 508122990 508123611 621 True 367 549 90.2865 1 572 2 chr1A.!!$R1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.035439 TAAAGAAGCCCCAGCCTTCG 60.035 55.0 0.0 0.0 41.25 3.79 F
482 483 0.036388 GCATCAGTGGGGAGACGAAA 60.036 55.0 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1263 1411 0.251354 GAGTCTTGGCCAGAGCATCA 59.749 55.000 5.11 0.0 42.56 3.07 R
2160 2414 2.284405 GGGTTCGAGTCCCCAGGA 60.284 66.667 14.49 0.0 40.88 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.192428 TCGAGGGAGTAAAGAAGCCC 58.808 55.000 0.00 0.00 41.00 5.19
29 30 0.178301 CGAGGGAGTAAAGAAGCCCC 59.822 60.000 0.00 0.00 41.65 5.80
30 31 1.286248 GAGGGAGTAAAGAAGCCCCA 58.714 55.000 0.00 0.00 41.65 4.96
31 32 1.210722 GAGGGAGTAAAGAAGCCCCAG 59.789 57.143 0.00 0.00 41.65 4.45
32 33 0.394488 GGGAGTAAAGAAGCCCCAGC 60.394 60.000 0.00 0.00 37.04 4.85
33 34 0.394488 GGAGTAAAGAAGCCCCAGCC 60.394 60.000 0.00 0.00 41.25 4.85
34 35 0.621082 GAGTAAAGAAGCCCCAGCCT 59.379 55.000 0.00 0.00 41.25 4.58
35 36 1.004862 GAGTAAAGAAGCCCCAGCCTT 59.995 52.381 0.00 0.00 41.25 4.35
36 37 1.004862 AGTAAAGAAGCCCCAGCCTTC 59.995 52.381 0.00 0.00 41.25 3.46
37 38 0.035439 TAAAGAAGCCCCAGCCTTCG 60.035 55.000 0.00 0.00 41.25 3.79
38 39 2.069165 AAAGAAGCCCCAGCCTTCGT 62.069 55.000 0.00 0.00 41.25 3.85
39 40 2.436824 GAAGCCCCAGCCTTCGTC 60.437 66.667 0.00 0.00 41.25 4.20
40 41 3.978571 GAAGCCCCAGCCTTCGTCC 62.979 68.421 0.00 0.00 41.25 4.79
43 44 4.452733 CCCCAGCCTTCGTCCGTC 62.453 72.222 0.00 0.00 0.00 4.79
44 45 4.452733 CCCAGCCTTCGTCCGTCC 62.453 72.222 0.00 0.00 0.00 4.79
45 46 4.796231 CCAGCCTTCGTCCGTCCG 62.796 72.222 0.00 0.00 0.00 4.79
46 47 4.052229 CAGCCTTCGTCCGTCCGT 62.052 66.667 0.00 0.00 0.00 4.69
47 48 4.052229 AGCCTTCGTCCGTCCGTG 62.052 66.667 0.00 0.00 0.00 4.94
49 50 3.677648 CCTTCGTCCGTCCGTGGT 61.678 66.667 0.00 0.00 0.00 4.16
50 51 2.430244 CTTCGTCCGTCCGTGGTG 60.430 66.667 0.00 0.00 0.00 4.17
51 52 3.203546 CTTCGTCCGTCCGTGGTGT 62.204 63.158 0.00 0.00 0.00 4.16
52 53 2.688526 CTTCGTCCGTCCGTGGTGTT 62.689 60.000 0.00 0.00 0.00 3.32
53 54 2.957484 TTCGTCCGTCCGTGGTGTTG 62.957 60.000 0.00 0.00 0.00 3.33
54 55 2.418356 GTCCGTCCGTGGTGTTGA 59.582 61.111 0.00 0.00 0.00 3.18
55 56 1.227321 GTCCGTCCGTGGTGTTGAA 60.227 57.895 0.00 0.00 0.00 2.69
56 57 1.227321 TCCGTCCGTGGTGTTGAAC 60.227 57.895 0.00 0.00 0.00 3.18
57 58 2.591311 CCGTCCGTGGTGTTGAACG 61.591 63.158 0.00 0.00 39.48 3.95
58 59 2.629763 GTCCGTGGTGTTGAACGC 59.370 61.111 0.00 0.00 38.46 4.84
65 66 2.050985 GTGTTGAACGCCAGCAGC 60.051 61.111 0.00 0.00 36.65 5.25
66 67 2.515757 TGTTGAACGCCAGCAGCA 60.516 55.556 0.00 0.00 44.04 4.41
67 68 2.050985 GTTGAACGCCAGCAGCAC 60.051 61.111 0.00 0.00 44.04 4.40
68 69 3.286751 TTGAACGCCAGCAGCACC 61.287 61.111 0.00 0.00 44.04 5.01
71 72 4.586235 AACGCCAGCAGCACCCTT 62.586 61.111 0.00 0.00 44.04 3.95
74 75 4.357279 GCCAGCAGCACCCTTCCT 62.357 66.667 0.00 0.00 42.97 3.36
75 76 2.360852 CCAGCAGCACCCTTCCTG 60.361 66.667 0.00 0.00 0.00 3.86
82 83 2.597217 CACCCTTCCTGCGCCAAA 60.597 61.111 4.18 0.00 0.00 3.28
83 84 2.597510 ACCCTTCCTGCGCCAAAC 60.598 61.111 4.18 0.00 0.00 2.93
84 85 2.597217 CCCTTCCTGCGCCAAACA 60.597 61.111 4.18 0.00 0.00 2.83
85 86 1.978617 CCCTTCCTGCGCCAAACAT 60.979 57.895 4.18 0.00 0.00 2.71
86 87 1.508088 CCTTCCTGCGCCAAACATC 59.492 57.895 4.18 0.00 0.00 3.06
87 88 1.243342 CCTTCCTGCGCCAAACATCA 61.243 55.000 4.18 0.00 0.00 3.07
88 89 0.813184 CTTCCTGCGCCAAACATCAT 59.187 50.000 4.18 0.00 0.00 2.45
89 90 0.810648 TTCCTGCGCCAAACATCATC 59.189 50.000 4.18 0.00 0.00 2.92
90 91 0.322366 TCCTGCGCCAAACATCATCA 60.322 50.000 4.18 0.00 0.00 3.07
91 92 0.099968 CCTGCGCCAAACATCATCAG 59.900 55.000 4.18 0.00 0.00 2.90
92 93 0.806868 CTGCGCCAAACATCATCAGT 59.193 50.000 4.18 0.00 0.00 3.41
93 94 1.200716 CTGCGCCAAACATCATCAGTT 59.799 47.619 4.18 0.00 0.00 3.16
94 95 1.068402 TGCGCCAAACATCATCAGTTG 60.068 47.619 4.18 0.00 0.00 3.16
95 96 1.068333 GCGCCAAACATCATCAGTTGT 60.068 47.619 0.00 0.00 0.00 3.32
96 97 2.587956 CGCCAAACATCATCAGTTGTG 58.412 47.619 0.00 0.00 0.00 3.33
97 98 2.669113 CGCCAAACATCATCAGTTGTGG 60.669 50.000 0.00 0.00 33.85 4.17
98 99 2.557924 GCCAAACATCATCAGTTGTGGA 59.442 45.455 0.00 0.00 33.17 4.02
99 100 3.366679 GCCAAACATCATCAGTTGTGGAG 60.367 47.826 0.00 0.00 33.17 3.86
100 101 4.074259 CCAAACATCATCAGTTGTGGAGA 58.926 43.478 0.00 0.00 33.17 3.71
101 102 4.703575 CCAAACATCATCAGTTGTGGAGAT 59.296 41.667 0.00 0.00 33.17 2.75
102 103 5.392703 CCAAACATCATCAGTTGTGGAGATG 60.393 44.000 0.00 0.00 39.38 2.90
103 104 3.882444 ACATCATCAGTTGTGGAGATGG 58.118 45.455 0.00 0.00 39.59 3.51
104 105 3.520721 ACATCATCAGTTGTGGAGATGGA 59.479 43.478 0.00 0.00 39.59 3.41
105 106 4.165565 ACATCATCAGTTGTGGAGATGGAT 59.834 41.667 0.00 0.00 39.59 3.41
106 107 4.849813 TCATCAGTTGTGGAGATGGATT 57.150 40.909 0.00 0.00 39.59 3.01
107 108 5.955961 TCATCAGTTGTGGAGATGGATTA 57.044 39.130 0.00 0.00 39.59 1.75
108 109 5.922053 TCATCAGTTGTGGAGATGGATTAG 58.078 41.667 0.00 0.00 39.59 1.73
109 110 4.760530 TCAGTTGTGGAGATGGATTAGG 57.239 45.455 0.00 0.00 0.00 2.69
110 111 4.361783 TCAGTTGTGGAGATGGATTAGGA 58.638 43.478 0.00 0.00 0.00 2.94
111 112 4.406972 TCAGTTGTGGAGATGGATTAGGAG 59.593 45.833 0.00 0.00 0.00 3.69
112 113 4.163078 CAGTTGTGGAGATGGATTAGGAGT 59.837 45.833 0.00 0.00 0.00 3.85
113 114 4.163078 AGTTGTGGAGATGGATTAGGAGTG 59.837 45.833 0.00 0.00 0.00 3.51
114 115 3.041211 TGTGGAGATGGATTAGGAGTGG 58.959 50.000 0.00 0.00 0.00 4.00
115 116 2.370189 GTGGAGATGGATTAGGAGTGGG 59.630 54.545 0.00 0.00 0.00 4.61
116 117 2.250008 TGGAGATGGATTAGGAGTGGGA 59.750 50.000 0.00 0.00 0.00 4.37
117 118 2.903135 GGAGATGGATTAGGAGTGGGAG 59.097 54.545 0.00 0.00 0.00 4.30
118 119 3.438668 GGAGATGGATTAGGAGTGGGAGA 60.439 52.174 0.00 0.00 0.00 3.71
119 120 3.831911 GAGATGGATTAGGAGTGGGAGAG 59.168 52.174 0.00 0.00 0.00 3.20
120 121 2.478872 TGGATTAGGAGTGGGAGAGG 57.521 55.000 0.00 0.00 0.00 3.69
121 122 1.651770 TGGATTAGGAGTGGGAGAGGT 59.348 52.381 0.00 0.00 0.00 3.85
122 123 2.043227 GGATTAGGAGTGGGAGAGGTG 58.957 57.143 0.00 0.00 0.00 4.00
123 124 2.043227 GATTAGGAGTGGGAGAGGTGG 58.957 57.143 0.00 0.00 0.00 4.61
124 125 1.089978 TTAGGAGTGGGAGAGGTGGA 58.910 55.000 0.00 0.00 0.00 4.02
125 126 0.631753 TAGGAGTGGGAGAGGTGGAG 59.368 60.000 0.00 0.00 0.00 3.86
126 127 1.079438 GGAGTGGGAGAGGTGGAGT 59.921 63.158 0.00 0.00 0.00 3.85
127 128 1.261238 GGAGTGGGAGAGGTGGAGTG 61.261 65.000 0.00 0.00 0.00 3.51
128 129 0.543174 GAGTGGGAGAGGTGGAGTGT 60.543 60.000 0.00 0.00 0.00 3.55
129 130 0.833834 AGTGGGAGAGGTGGAGTGTG 60.834 60.000 0.00 0.00 0.00 3.82
130 131 1.122019 GTGGGAGAGGTGGAGTGTGT 61.122 60.000 0.00 0.00 0.00 3.72
131 132 1.121407 TGGGAGAGGTGGAGTGTGTG 61.121 60.000 0.00 0.00 0.00 3.82
132 133 1.122019 GGGAGAGGTGGAGTGTGTGT 61.122 60.000 0.00 0.00 0.00 3.72
133 134 0.318762 GGAGAGGTGGAGTGTGTGTC 59.681 60.000 0.00 0.00 0.00 3.67
134 135 0.039074 GAGAGGTGGAGTGTGTGTCG 60.039 60.000 0.00 0.00 0.00 4.35
135 136 0.755698 AGAGGTGGAGTGTGTGTCGT 60.756 55.000 0.00 0.00 0.00 4.34
136 137 0.956633 GAGGTGGAGTGTGTGTCGTA 59.043 55.000 0.00 0.00 0.00 3.43
137 138 0.672342 AGGTGGAGTGTGTGTCGTAC 59.328 55.000 0.00 0.00 0.00 3.67
138 139 0.319297 GGTGGAGTGTGTGTCGTACC 60.319 60.000 0.00 0.00 0.00 3.34
139 140 0.672342 GTGGAGTGTGTGTCGTACCT 59.328 55.000 0.00 0.00 0.00 3.08
140 141 0.671796 TGGAGTGTGTGTCGTACCTG 59.328 55.000 0.00 0.00 0.00 4.00
141 142 0.956633 GGAGTGTGTGTCGTACCTGA 59.043 55.000 0.00 0.00 0.00 3.86
142 143 1.338973 GGAGTGTGTGTCGTACCTGAA 59.661 52.381 0.00 0.00 0.00 3.02
143 144 2.223876 GGAGTGTGTGTCGTACCTGAAA 60.224 50.000 0.00 0.00 0.00 2.69
144 145 3.450578 GAGTGTGTGTCGTACCTGAAAA 58.549 45.455 0.00 0.00 0.00 2.29
145 146 4.056050 GAGTGTGTGTCGTACCTGAAAAT 58.944 43.478 0.00 0.00 0.00 1.82
146 147 4.056050 AGTGTGTGTCGTACCTGAAAATC 58.944 43.478 0.00 0.00 0.00 2.17
147 148 3.054166 TGTGTGTCGTACCTGAAAATCG 58.946 45.455 0.00 0.00 0.00 3.34
148 149 2.410730 GTGTGTCGTACCTGAAAATCGG 59.589 50.000 0.00 0.00 0.00 4.18
155 156 2.482326 CCTGAAAATCGGGGTGAGC 58.518 57.895 0.00 0.00 39.28 4.26
156 157 1.369091 CCTGAAAATCGGGGTGAGCG 61.369 60.000 0.00 0.00 39.28 5.03
157 158 1.982073 CTGAAAATCGGGGTGAGCGC 61.982 60.000 0.00 0.00 0.00 5.92
158 159 2.750237 AAAATCGGGGTGAGCGCC 60.750 61.111 2.29 0.00 43.52 6.53
159 160 3.561120 AAAATCGGGGTGAGCGCCA 62.561 57.895 2.29 0.00 46.90 5.69
160 161 2.837031 AAAATCGGGGTGAGCGCCAT 62.837 55.000 2.29 0.00 46.90 4.40
161 162 4.552365 ATCGGGGTGAGCGCCATG 62.552 66.667 2.29 0.00 46.90 3.66
163 164 4.155733 CGGGGTGAGCGCCATGTA 62.156 66.667 2.29 0.00 46.90 2.29
164 165 2.513897 GGGGTGAGCGCCATGTAC 60.514 66.667 2.29 0.00 45.94 2.90
165 166 2.890474 GGGTGAGCGCCATGTACG 60.890 66.667 2.29 1.26 0.00 3.67
172 173 4.201679 CGCCATGTACGCGGAGGA 62.202 66.667 12.47 0.00 45.80 3.71
173 174 2.585247 GCCATGTACGCGGAGGAC 60.585 66.667 12.47 3.19 0.00 3.85
174 175 2.106332 CCATGTACGCGGAGGACC 59.894 66.667 12.47 0.00 30.72 4.46
175 176 2.106332 CATGTACGCGGAGGACCC 59.894 66.667 12.47 0.00 30.72 4.46
176 177 2.043248 ATGTACGCGGAGGACCCT 60.043 61.111 12.47 0.00 30.72 4.34
177 178 2.125961 ATGTACGCGGAGGACCCTC 61.126 63.158 12.47 7.53 42.04 4.30
178 179 2.439883 GTACGCGGAGGACCCTCT 60.440 66.667 12.47 0.00 42.38 3.69
179 180 2.124403 TACGCGGAGGACCCTCTC 60.124 66.667 12.47 7.25 42.38 3.20
180 181 2.677289 TACGCGGAGGACCCTCTCT 61.677 63.158 12.47 0.00 42.38 3.10
181 182 2.605854 TACGCGGAGGACCCTCTCTC 62.606 65.000 12.47 4.81 42.38 3.20
182 183 3.213402 GCGGAGGACCCTCTCTCG 61.213 72.222 15.03 11.34 42.38 4.04
183 184 3.213402 CGGAGGACCCTCTCTCGC 61.213 72.222 15.03 0.00 42.38 5.03
184 185 2.835895 GGAGGACCCTCTCTCGCC 60.836 72.222 15.03 0.00 42.38 5.54
185 186 2.043852 GAGGACCCTCTCTCGCCA 60.044 66.667 8.76 0.00 39.80 5.69
186 187 2.363147 AGGACCCTCTCTCGCCAC 60.363 66.667 0.00 0.00 0.00 5.01
187 188 3.827898 GGACCCTCTCTCGCCACG 61.828 72.222 0.00 0.00 0.00 4.94
188 189 3.827898 GACCCTCTCTCGCCACGG 61.828 72.222 0.00 0.00 0.00 4.94
213 214 2.714259 CTCCTCTGGAGTAGCCTCG 58.286 63.158 5.50 0.00 44.25 4.63
214 215 0.106918 CTCCTCTGGAGTAGCCTCGT 60.107 60.000 5.50 0.00 44.25 4.18
215 216 0.107116 TCCTCTGGAGTAGCCTCGTC 60.107 60.000 0.00 0.00 38.70 4.20
216 217 0.394488 CCTCTGGAGTAGCCTCGTCA 60.394 60.000 0.00 0.00 38.70 4.35
217 218 1.686355 CTCTGGAGTAGCCTCGTCAT 58.314 55.000 0.00 0.00 38.70 3.06
218 219 1.336440 CTCTGGAGTAGCCTCGTCATG 59.664 57.143 0.00 0.00 38.70 3.07
219 220 0.387202 CTGGAGTAGCCTCGTCATGG 59.613 60.000 0.00 0.00 38.70 3.66
237 238 3.659092 CCGCCGTCAGCTGCAAAA 61.659 61.111 9.47 0.00 40.39 2.44
238 239 2.127118 CGCCGTCAGCTGCAAAAG 60.127 61.111 9.47 0.00 40.39 2.27
248 249 4.077844 TGCAAAAGCGCAGATCCA 57.922 50.000 11.47 0.00 36.86 3.41
249 250 1.878070 TGCAAAAGCGCAGATCCAG 59.122 52.632 11.47 0.00 36.86 3.86
250 251 1.138247 GCAAAAGCGCAGATCCAGG 59.862 57.895 11.47 0.00 0.00 4.45
251 252 1.805254 CAAAAGCGCAGATCCAGGG 59.195 57.895 11.47 0.00 0.00 4.45
252 253 1.379044 AAAAGCGCAGATCCAGGGG 60.379 57.895 11.47 0.00 0.00 4.79
253 254 4.496336 AAGCGCAGATCCAGGGGC 62.496 66.667 11.47 9.70 42.61 5.80
256 257 4.247380 CGCAGATCCAGGGGCCTC 62.247 72.222 0.84 0.00 0.00 4.70
257 258 3.883549 GCAGATCCAGGGGCCTCC 61.884 72.222 0.00 0.00 0.00 4.30
268 269 4.785453 GGCCTCCCTTGGTCGCAG 62.785 72.222 0.00 0.00 0.00 5.18
270 271 3.710722 CCTCCCTTGGTCGCAGCT 61.711 66.667 0.00 0.00 0.00 4.24
271 272 2.125350 CTCCCTTGGTCGCAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
272 273 3.997064 CTCCCTTGGTCGCAGCTCG 62.997 68.421 0.00 0.00 40.15 5.03
274 275 4.749310 CCTTGGTCGCAGCTCGCT 62.749 66.667 6.58 0.00 39.08 4.93
275 276 3.485431 CTTGGTCGCAGCTCGCTG 61.485 66.667 14.30 14.30 46.15 5.18
278 279 4.742201 GGTCGCAGCTCGCTGGAA 62.742 66.667 19.42 0.09 43.77 3.53
279 280 3.184683 GTCGCAGCTCGCTGGAAG 61.185 66.667 19.42 0.00 43.77 3.46
294 295 4.730487 AAGCTGCGCTTCCTTGAT 57.270 50.000 9.73 0.00 46.77 2.57
295 296 2.177950 AAGCTGCGCTTCCTTGATG 58.822 52.632 9.73 0.00 46.77 3.07
296 297 0.321919 AAGCTGCGCTTCCTTGATGA 60.322 50.000 9.73 0.00 46.77 2.92
297 298 0.743701 AGCTGCGCTTCCTTGATGAG 60.744 55.000 9.73 0.00 33.89 2.90
307 308 3.359194 CTTGATGAGGACGAGCCAG 57.641 57.895 0.00 0.00 40.02 4.85
308 309 0.179089 CTTGATGAGGACGAGCCAGG 60.179 60.000 0.00 0.00 40.02 4.45
309 310 1.617018 TTGATGAGGACGAGCCAGGG 61.617 60.000 0.00 0.00 40.02 4.45
310 311 2.765807 ATGAGGACGAGCCAGGGG 60.766 66.667 0.00 0.00 40.02 4.79
311 312 3.625632 ATGAGGACGAGCCAGGGGT 62.626 63.158 0.00 0.00 40.02 4.95
312 313 3.775654 GAGGACGAGCCAGGGGTG 61.776 72.222 0.00 0.00 40.02 4.61
313 314 4.640690 AGGACGAGCCAGGGGTGT 62.641 66.667 0.00 0.00 40.02 4.16
314 315 4.083862 GGACGAGCCAGGGGTGTC 62.084 72.222 0.00 3.45 36.34 3.67
315 316 4.436998 GACGAGCCAGGGGTGTCG 62.437 72.222 0.00 0.12 37.33 4.35
322 323 3.991051 CAGGGGTGTCGCGTCACT 61.991 66.667 29.91 12.71 38.28 3.41
323 324 3.991051 AGGGGTGTCGCGTCACTG 61.991 66.667 29.91 0.00 38.28 3.66
324 325 3.986006 GGGGTGTCGCGTCACTGA 61.986 66.667 29.91 0.00 38.28 3.41
325 326 2.261671 GGGTGTCGCGTCACTGAT 59.738 61.111 29.91 0.00 38.28 2.90
326 327 1.805945 GGGTGTCGCGTCACTGATC 60.806 63.158 29.91 16.56 38.28 2.92
327 328 1.213013 GGTGTCGCGTCACTGATCT 59.787 57.895 29.91 0.00 38.28 2.75
328 329 1.073216 GGTGTCGCGTCACTGATCTG 61.073 60.000 29.91 0.00 38.28 2.90
329 330 1.073216 GTGTCGCGTCACTGATCTGG 61.073 60.000 25.65 0.00 35.68 3.86
330 331 1.517257 GTCGCGTCACTGATCTGGG 60.517 63.158 5.77 0.00 0.00 4.45
331 332 1.677633 TCGCGTCACTGATCTGGGA 60.678 57.895 5.77 0.00 0.00 4.37
332 333 1.215382 CGCGTCACTGATCTGGGAA 59.785 57.895 6.07 0.00 0.00 3.97
333 334 1.078759 CGCGTCACTGATCTGGGAAC 61.079 60.000 6.07 1.43 0.00 3.62
334 335 0.037326 GCGTCACTGATCTGGGAACA 60.037 55.000 6.07 0.00 39.59 3.18
335 336 1.714794 CGTCACTGATCTGGGAACAC 58.285 55.000 6.07 0.00 35.60 3.32
336 337 1.673033 CGTCACTGATCTGGGAACACC 60.673 57.143 6.07 0.00 40.81 4.16
338 339 1.347707 TCACTGATCTGGGAACACCAC 59.652 52.381 1.44 0.00 46.80 4.16
339 340 0.693049 ACTGATCTGGGAACACCACC 59.307 55.000 4.49 0.00 46.80 4.61
340 341 0.391661 CTGATCTGGGAACACCACCG 60.392 60.000 0.00 0.00 46.80 4.94
341 342 0.834261 TGATCTGGGAACACCACCGA 60.834 55.000 0.00 0.00 46.80 4.69
342 343 0.391263 GATCTGGGAACACCACCGAC 60.391 60.000 0.00 0.00 46.80 4.79
343 344 2.167398 ATCTGGGAACACCACCGACG 62.167 60.000 0.00 0.00 46.80 5.12
344 345 3.155861 TGGGAACACCACCGACGT 61.156 61.111 0.00 0.00 46.80 4.34
345 346 2.663852 GGGAACACCACCGACGTG 60.664 66.667 0.00 0.00 39.85 4.49
353 354 4.351938 CACCGACGTGGGCTTCGA 62.352 66.667 17.43 0.00 44.64 3.71
354 355 3.379445 ACCGACGTGGGCTTCGAT 61.379 61.111 17.43 0.00 44.64 3.59
355 356 2.582498 CCGACGTGGGCTTCGATC 60.582 66.667 2.79 0.00 38.44 3.69
356 357 2.490217 CGACGTGGGCTTCGATCT 59.510 61.111 0.00 0.00 38.44 2.75
357 358 1.874019 CGACGTGGGCTTCGATCTG 60.874 63.158 0.00 0.00 38.44 2.90
358 359 1.519455 GACGTGGGCTTCGATCTGG 60.519 63.158 0.00 0.00 0.00 3.86
359 360 1.945354 GACGTGGGCTTCGATCTGGA 61.945 60.000 0.00 0.00 0.00 3.86
360 361 1.218047 CGTGGGCTTCGATCTGGAA 59.782 57.895 0.00 0.00 0.00 3.53
361 362 0.807667 CGTGGGCTTCGATCTGGAAG 60.808 60.000 6.11 6.11 44.92 3.46
366 367 3.721625 CTTCGATCTGGAAGCACGA 57.278 52.632 0.00 0.00 37.24 4.35
367 368 1.272781 CTTCGATCTGGAAGCACGAC 58.727 55.000 0.00 0.00 39.76 4.34
368 369 0.108804 TTCGATCTGGAAGCACGACC 60.109 55.000 0.00 0.00 39.76 4.79
369 370 1.874019 CGATCTGGAAGCACGACCG 60.874 63.158 0.00 0.00 35.12 4.79
370 371 1.215647 GATCTGGAAGCACGACCGT 59.784 57.895 0.00 0.00 0.00 4.83
371 372 0.802607 GATCTGGAAGCACGACCGTC 60.803 60.000 0.00 0.00 0.00 4.79
372 373 2.543687 ATCTGGAAGCACGACCGTCG 62.544 60.000 19.24 19.24 46.93 5.12
373 374 3.263503 CTGGAAGCACGACCGTCGA 62.264 63.158 27.03 2.02 43.74 4.20
374 375 2.504244 GGAAGCACGACCGTCGAG 60.504 66.667 27.03 19.94 43.74 4.04
375 376 2.504244 GAAGCACGACCGTCGAGG 60.504 66.667 27.03 18.14 43.74 4.63
376 377 2.974489 GAAGCACGACCGTCGAGGA 61.974 63.158 27.03 0.00 43.74 3.71
377 378 2.852431 GAAGCACGACCGTCGAGGAG 62.852 65.000 27.03 13.87 43.74 3.69
378 379 4.477975 GCACGACCGTCGAGGAGG 62.478 72.222 27.03 11.35 43.74 4.30
379 380 3.812019 CACGACCGTCGAGGAGGG 61.812 72.222 27.03 2.99 43.74 4.30
396 397 3.090532 GGGGCAACTCCGGATCCT 61.091 66.667 3.57 0.00 34.94 3.24
397 398 2.680370 GGGGCAACTCCGGATCCTT 61.680 63.158 3.57 0.00 34.94 3.36
398 399 1.342672 GGGGCAACTCCGGATCCTTA 61.343 60.000 3.57 0.00 34.94 2.69
399 400 0.179054 GGGCAACTCCGGATCCTTAC 60.179 60.000 3.57 0.00 34.94 2.34
400 401 0.179054 GGCAACTCCGGATCCTTACC 60.179 60.000 3.57 0.00 0.00 2.85
401 402 0.539986 GCAACTCCGGATCCTTACCA 59.460 55.000 3.57 0.00 0.00 3.25
402 403 1.141053 GCAACTCCGGATCCTTACCAT 59.859 52.381 3.57 0.00 0.00 3.55
403 404 2.421529 GCAACTCCGGATCCTTACCATT 60.422 50.000 3.57 0.00 0.00 3.16
404 405 3.467803 CAACTCCGGATCCTTACCATTC 58.532 50.000 3.57 0.00 0.00 2.67
405 406 2.759355 ACTCCGGATCCTTACCATTCA 58.241 47.619 3.57 0.00 0.00 2.57
406 407 3.318313 ACTCCGGATCCTTACCATTCAT 58.682 45.455 3.57 0.00 0.00 2.57
407 408 3.325135 ACTCCGGATCCTTACCATTCATC 59.675 47.826 3.57 0.00 0.00 2.92
408 409 3.580458 CTCCGGATCCTTACCATTCATCT 59.420 47.826 3.57 0.00 0.00 2.90
409 410 3.973973 TCCGGATCCTTACCATTCATCTT 59.026 43.478 10.75 0.00 0.00 2.40
410 411 4.040461 TCCGGATCCTTACCATTCATCTTC 59.960 45.833 10.75 0.00 0.00 2.87
411 412 3.990469 CGGATCCTTACCATTCATCTTCG 59.010 47.826 10.75 0.00 0.00 3.79
412 413 3.748568 GGATCCTTACCATTCATCTTCGC 59.251 47.826 3.84 0.00 0.00 4.70
413 414 3.194005 TCCTTACCATTCATCTTCGCC 57.806 47.619 0.00 0.00 0.00 5.54
414 415 2.503765 TCCTTACCATTCATCTTCGCCA 59.496 45.455 0.00 0.00 0.00 5.69
415 416 2.874701 CCTTACCATTCATCTTCGCCAG 59.125 50.000 0.00 0.00 0.00 4.85
416 417 3.535561 CTTACCATTCATCTTCGCCAGT 58.464 45.455 0.00 0.00 0.00 4.00
417 418 2.496899 ACCATTCATCTTCGCCAGTT 57.503 45.000 0.00 0.00 0.00 3.16
418 419 2.086869 ACCATTCATCTTCGCCAGTTG 58.913 47.619 0.00 0.00 0.00 3.16
419 420 1.202222 CCATTCATCTTCGCCAGTTGC 60.202 52.381 0.00 0.00 0.00 4.17
420 421 1.098050 ATTCATCTTCGCCAGTTGCC 58.902 50.000 0.00 0.00 36.24 4.52
421 422 0.250684 TTCATCTTCGCCAGTTGCCA 60.251 50.000 0.00 0.00 36.24 4.92
422 423 0.674581 TCATCTTCGCCAGTTGCCAG 60.675 55.000 0.00 0.00 36.24 4.85
423 424 0.957395 CATCTTCGCCAGTTGCCAGT 60.957 55.000 0.00 0.00 36.24 4.00
424 425 0.957395 ATCTTCGCCAGTTGCCAGTG 60.957 55.000 0.00 0.00 36.24 3.66
425 426 1.893808 CTTCGCCAGTTGCCAGTGT 60.894 57.895 0.00 0.00 36.24 3.55
426 427 1.845809 CTTCGCCAGTTGCCAGTGTC 61.846 60.000 0.00 0.00 36.24 3.67
427 428 3.716006 CGCCAGTTGCCAGTGTCG 61.716 66.667 0.00 0.00 36.24 4.35
428 429 4.030452 GCCAGTTGCCAGTGTCGC 62.030 66.667 0.00 0.00 0.00 5.19
429 430 3.357079 CCAGTTGCCAGTGTCGCC 61.357 66.667 0.00 0.00 0.00 5.54
430 431 3.716006 CAGTTGCCAGTGTCGCCG 61.716 66.667 0.00 0.00 0.00 6.46
431 432 4.235762 AGTTGCCAGTGTCGCCGT 62.236 61.111 0.00 0.00 0.00 5.68
432 433 4.012895 GTTGCCAGTGTCGCCGTG 62.013 66.667 0.00 0.00 0.00 4.94
447 448 3.403558 GTGGGGCAGGAGGGAGAC 61.404 72.222 0.00 0.00 0.00 3.36
449 450 4.779733 GGGGCAGGAGGGAGACGA 62.780 72.222 0.00 0.00 0.00 4.20
450 451 3.462678 GGGCAGGAGGGAGACGAC 61.463 72.222 0.00 0.00 0.00 4.34
451 452 2.680352 GGCAGGAGGGAGACGACA 60.680 66.667 0.00 0.00 0.00 4.35
452 453 2.716017 GGCAGGAGGGAGACGACAG 61.716 68.421 0.00 0.00 0.00 3.51
453 454 1.679305 GCAGGAGGGAGACGACAGA 60.679 63.158 0.00 0.00 0.00 3.41
454 455 1.040339 GCAGGAGGGAGACGACAGAT 61.040 60.000 0.00 0.00 0.00 2.90
455 456 0.743688 CAGGAGGGAGACGACAGATG 59.256 60.000 0.00 0.00 0.00 2.90
456 457 0.396417 AGGAGGGAGACGACAGATGG 60.396 60.000 0.00 0.00 0.00 3.51
457 458 1.395826 GGAGGGAGACGACAGATGGG 61.396 65.000 0.00 0.00 0.00 4.00
458 459 1.381872 AGGGAGACGACAGATGGGG 60.382 63.158 0.00 0.00 0.00 4.96
459 460 1.381327 GGGAGACGACAGATGGGGA 60.381 63.158 0.00 0.00 0.00 4.81
460 461 1.677637 GGGAGACGACAGATGGGGAC 61.678 65.000 0.00 0.00 0.00 4.46
461 462 1.433879 GAGACGACAGATGGGGACG 59.566 63.158 0.00 0.00 0.00 4.79
462 463 2.005960 GAGACGACAGATGGGGACGG 62.006 65.000 0.00 0.00 0.00 4.79
463 464 3.075005 ACGACAGATGGGGACGGG 61.075 66.667 0.00 0.00 0.00 5.28
464 465 4.530857 CGACAGATGGGGACGGGC 62.531 72.222 0.00 0.00 0.00 6.13
465 466 3.399181 GACAGATGGGGACGGGCA 61.399 66.667 0.00 0.00 0.00 5.36
466 467 2.692368 ACAGATGGGGACGGGCAT 60.692 61.111 0.00 0.00 0.00 4.40
467 468 2.111878 CAGATGGGGACGGGCATC 59.888 66.667 0.00 0.00 0.00 3.91
468 469 2.366837 AGATGGGGACGGGCATCA 60.367 61.111 0.00 0.00 29.05 3.07
469 470 2.111878 GATGGGGACGGGCATCAG 59.888 66.667 0.00 0.00 0.00 2.90
470 471 2.692368 ATGGGGACGGGCATCAGT 60.692 61.111 0.00 0.00 0.00 3.41
471 472 2.947938 GATGGGGACGGGCATCAGTG 62.948 65.000 0.00 0.00 0.00 3.66
472 473 4.489771 GGGGACGGGCATCAGTGG 62.490 72.222 0.00 0.00 0.00 4.00
473 474 4.489771 GGGACGGGCATCAGTGGG 62.490 72.222 0.00 0.00 0.00 4.61
474 475 4.489771 GGACGGGCATCAGTGGGG 62.490 72.222 0.00 0.00 0.00 4.96
475 476 3.399181 GACGGGCATCAGTGGGGA 61.399 66.667 0.00 0.00 0.00 4.81
476 477 3.391665 GACGGGCATCAGTGGGGAG 62.392 68.421 0.00 0.00 0.00 4.30
477 478 3.083349 CGGGCATCAGTGGGGAGA 61.083 66.667 0.00 0.00 0.00 3.71
478 479 2.592308 GGGCATCAGTGGGGAGAC 59.408 66.667 0.00 0.00 0.00 3.36
479 480 2.187946 GGCATCAGTGGGGAGACG 59.812 66.667 0.00 0.00 0.00 4.18
480 481 2.359169 GGCATCAGTGGGGAGACGA 61.359 63.158 0.00 0.00 0.00 4.20
481 482 1.596934 GCATCAGTGGGGAGACGAA 59.403 57.895 0.00 0.00 0.00 3.85
482 483 0.036388 GCATCAGTGGGGAGACGAAA 60.036 55.000 0.00 0.00 0.00 3.46
483 484 2.009042 GCATCAGTGGGGAGACGAAAG 61.009 57.143 0.00 0.00 0.00 2.62
484 485 0.905357 ATCAGTGGGGAGACGAAAGG 59.095 55.000 0.00 0.00 0.00 3.11
485 486 1.192146 TCAGTGGGGAGACGAAAGGG 61.192 60.000 0.00 0.00 0.00 3.95
486 487 1.918800 AGTGGGGAGACGAAAGGGG 60.919 63.158 0.00 0.00 0.00 4.79
487 488 1.916777 GTGGGGAGACGAAAGGGGA 60.917 63.158 0.00 0.00 0.00 4.81
488 489 1.082206 TGGGGAGACGAAAGGGGAT 59.918 57.895 0.00 0.00 0.00 3.85
489 490 0.549169 TGGGGAGACGAAAGGGGATT 60.549 55.000 0.00 0.00 0.00 3.01
490 491 0.624254 GGGGAGACGAAAGGGGATTT 59.376 55.000 0.00 0.00 0.00 2.17
491 492 1.682087 GGGGAGACGAAAGGGGATTTG 60.682 57.143 0.00 0.00 0.00 2.32
492 493 1.280998 GGGAGACGAAAGGGGATTTGA 59.719 52.381 0.00 0.00 0.00 2.69
493 494 2.357075 GGAGACGAAAGGGGATTTGAC 58.643 52.381 0.00 0.00 0.00 3.18
494 495 2.357075 GAGACGAAAGGGGATTTGACC 58.643 52.381 0.00 0.00 0.00 4.02
495 496 1.084289 GACGAAAGGGGATTTGACCG 58.916 55.000 0.00 0.00 0.00 4.79
496 497 0.958876 ACGAAAGGGGATTTGACCGC 60.959 55.000 0.00 0.00 42.13 5.68
497 498 1.800681 GAAAGGGGATTTGACCGCG 59.199 57.895 0.00 0.00 45.58 6.46
498 499 1.654023 GAAAGGGGATTTGACCGCGG 61.654 60.000 26.86 26.86 45.58 6.46
499 500 3.638592 AAGGGGATTTGACCGCGGG 62.639 63.158 31.76 11.88 45.58 6.13
500 501 4.419921 GGGGATTTGACCGCGGGT 62.420 66.667 31.76 15.52 39.44 5.28
501 502 2.360726 GGGATTTGACCGCGGGTT 60.361 61.111 31.76 9.62 35.25 4.11
502 503 2.696759 GGGATTTGACCGCGGGTTG 61.697 63.158 31.76 3.90 35.25 3.77
503 504 1.673009 GGATTTGACCGCGGGTTGA 60.673 57.895 31.76 13.21 35.25 3.18
504 505 1.238625 GGATTTGACCGCGGGTTGAA 61.239 55.000 31.76 18.18 35.25 2.69
505 506 0.808755 GATTTGACCGCGGGTTGAAT 59.191 50.000 31.76 21.95 35.25 2.57
506 507 2.011222 GATTTGACCGCGGGTTGAATA 58.989 47.619 31.76 8.06 35.25 1.75
507 508 2.116827 TTTGACCGCGGGTTGAATAT 57.883 45.000 31.76 4.91 35.25 1.28
508 509 2.983907 TTGACCGCGGGTTGAATATA 57.016 45.000 31.76 1.13 35.25 0.86
509 510 2.228138 TGACCGCGGGTTGAATATAC 57.772 50.000 31.76 7.54 35.25 1.47
510 511 1.758280 TGACCGCGGGTTGAATATACT 59.242 47.619 31.76 2.41 35.25 2.12
511 512 2.957680 TGACCGCGGGTTGAATATACTA 59.042 45.455 31.76 0.00 35.25 1.82
512 513 3.384146 TGACCGCGGGTTGAATATACTAA 59.616 43.478 31.76 0.00 35.25 2.24
513 514 4.141981 TGACCGCGGGTTGAATATACTAAA 60.142 41.667 31.76 0.00 35.25 1.85
514 515 4.768583 ACCGCGGGTTGAATATACTAAAA 58.231 39.130 31.76 0.00 27.29 1.52
515 516 5.370679 ACCGCGGGTTGAATATACTAAAAT 58.629 37.500 31.76 0.00 27.29 1.82
516 517 6.523840 ACCGCGGGTTGAATATACTAAAATA 58.476 36.000 31.76 0.00 27.29 1.40
517 518 6.991531 ACCGCGGGTTGAATATACTAAAATAA 59.008 34.615 31.76 0.00 27.29 1.40
518 519 7.172019 ACCGCGGGTTGAATATACTAAAATAAG 59.828 37.037 31.76 0.00 27.29 1.73
519 520 7.360607 CCGCGGGTTGAATATACTAAAATAAGG 60.361 40.741 20.10 0.00 0.00 2.69
520 521 7.360607 CGCGGGTTGAATATACTAAAATAAGGG 60.361 40.741 0.00 0.00 0.00 3.95
521 522 7.094506 GCGGGTTGAATATACTAAAATAAGGGG 60.095 40.741 0.00 0.00 0.00 4.79
522 523 7.392393 CGGGTTGAATATACTAAAATAAGGGGG 59.608 40.741 0.00 0.00 0.00 5.40
523 524 7.177921 GGGTTGAATATACTAAAATAAGGGGGC 59.822 40.741 0.00 0.00 0.00 5.80
524 525 7.948447 GGTTGAATATACTAAAATAAGGGGGCT 59.052 37.037 0.00 0.00 0.00 5.19
525 526 9.363401 GTTGAATATACTAAAATAAGGGGGCTT 57.637 33.333 0.00 0.00 0.00 4.35
526 527 9.945633 TTGAATATACTAAAATAAGGGGGCTTT 57.054 29.630 0.00 0.00 0.00 3.51
527 528 9.945633 TGAATATACTAAAATAAGGGGGCTTTT 57.054 29.630 0.00 0.00 0.00 2.27
531 532 8.991783 ATACTAAAATAAGGGGGCTTTTCTAC 57.008 34.615 0.00 0.00 0.00 2.59
532 533 6.796648 ACTAAAATAAGGGGGCTTTTCTACA 58.203 36.000 0.00 0.00 0.00 2.74
533 534 7.243091 ACTAAAATAAGGGGGCTTTTCTACAA 58.757 34.615 0.00 0.00 0.00 2.41
534 535 7.731235 ACTAAAATAAGGGGGCTTTTCTACAAA 59.269 33.333 0.00 0.00 0.00 2.83
535 536 7.381789 AAAATAAGGGGGCTTTTCTACAAAA 57.618 32.000 0.00 0.00 0.00 2.44
536 537 5.995565 ATAAGGGGGCTTTTCTACAAAAC 57.004 39.130 0.00 0.00 0.00 2.43
537 538 3.322191 AGGGGGCTTTTCTACAAAACA 57.678 42.857 0.00 0.00 0.00 2.83
538 539 3.648739 AGGGGGCTTTTCTACAAAACAA 58.351 40.909 0.00 0.00 0.00 2.83
539 540 4.034410 AGGGGGCTTTTCTACAAAACAAA 58.966 39.130 0.00 0.00 0.00 2.83
540 541 4.471747 AGGGGGCTTTTCTACAAAACAAAA 59.528 37.500 0.00 0.00 0.00 2.44
541 542 4.573201 GGGGGCTTTTCTACAAAACAAAAC 59.427 41.667 0.00 0.00 0.00 2.43
542 543 5.179533 GGGGCTTTTCTACAAAACAAAACA 58.820 37.500 0.00 0.00 0.00 2.83
543 544 5.293324 GGGGCTTTTCTACAAAACAAAACAG 59.707 40.000 0.00 0.00 0.00 3.16
544 545 5.872617 GGGCTTTTCTACAAAACAAAACAGT 59.127 36.000 0.00 0.00 0.00 3.55
545 546 7.036829 GGGCTTTTCTACAAAACAAAACAGTA 58.963 34.615 0.00 0.00 0.00 2.74
546 547 7.709182 GGGCTTTTCTACAAAACAAAACAGTAT 59.291 33.333 0.00 0.00 0.00 2.12
547 548 8.752254 GGCTTTTCTACAAAACAAAACAGTATC 58.248 33.333 0.00 0.00 0.00 2.24
548 549 9.516314 GCTTTTCTACAAAACAAAACAGTATCT 57.484 29.630 0.00 0.00 0.00 1.98
552 553 8.958119 TCTACAAAACAAAACAGTATCTCAGT 57.042 30.769 0.00 0.00 0.00 3.41
553 554 9.391006 TCTACAAAACAAAACAGTATCTCAGTT 57.609 29.630 0.00 0.00 0.00 3.16
557 558 8.958043 CAAAACAAAACAGTATCTCAGTTTAGC 58.042 33.333 0.00 0.00 35.30 3.09
558 559 6.803154 ACAAAACAGTATCTCAGTTTAGCC 57.197 37.500 0.00 0.00 35.30 3.93
559 560 6.296026 ACAAAACAGTATCTCAGTTTAGCCA 58.704 36.000 0.00 0.00 35.30 4.75
560 561 6.204882 ACAAAACAGTATCTCAGTTTAGCCAC 59.795 38.462 0.00 0.00 35.30 5.01
561 562 5.746990 AACAGTATCTCAGTTTAGCCACT 57.253 39.130 0.00 0.00 0.00 4.00
562 563 5.746990 ACAGTATCTCAGTTTAGCCACTT 57.253 39.130 0.00 0.00 0.00 3.16
563 564 6.852420 ACAGTATCTCAGTTTAGCCACTTA 57.148 37.500 0.00 0.00 0.00 2.24
564 565 7.241042 ACAGTATCTCAGTTTAGCCACTTAA 57.759 36.000 0.00 0.00 0.00 1.85
638 639 0.659957 GCCCTCAGATGCGAATTGTC 59.340 55.000 0.00 0.00 0.00 3.18
739 740 0.546747 CCTTACAGGTGGGACCAGGA 60.547 60.000 0.00 0.00 41.95 3.86
750 751 1.671742 GACCAGGAGGCAGAAACGA 59.328 57.895 0.00 0.00 39.06 3.85
860 861 2.494918 GGCGACAGCGGTAGTGAT 59.505 61.111 0.00 0.00 46.35 3.06
1109 1112 0.879090 GGCGTTGATCGAAGGGTTTT 59.121 50.000 0.00 0.00 42.86 2.43
1263 1411 3.960102 TGACATGCTTCTTTCTTTGGGTT 59.040 39.130 0.00 0.00 0.00 4.11
1337 1485 2.139888 TTGCGCATGTTGCCACGAAT 62.140 50.000 12.75 0.00 41.12 3.34
1774 2025 1.714541 TGCTCTTGGGCCAAATTCAA 58.285 45.000 21.28 2.31 0.00 2.69
1779 2030 0.602372 TTGGGCCAAATTCAAAGCGC 60.602 50.000 18.51 0.00 38.54 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.796231 CGGACGGACGAAGGCTGG 62.796 72.222 0.00 0.00 35.47 4.85
29 30 4.052229 ACGGACGGACGAAGGCTG 62.052 66.667 8.01 0.00 37.61 4.85
30 31 4.052229 CACGGACGGACGAAGGCT 62.052 66.667 8.01 0.00 37.61 4.58
32 33 3.677648 ACCACGGACGGACGAAGG 61.678 66.667 8.01 10.75 38.10 3.46
33 34 2.430244 CACCACGGACGGACGAAG 60.430 66.667 8.01 1.58 37.61 3.79
34 35 2.784356 AACACCACGGACGGACGAA 61.784 57.895 8.01 0.00 37.61 3.85
35 36 3.218470 AACACCACGGACGGACGA 61.218 61.111 8.01 0.00 37.61 4.20
36 37 2.957484 TTCAACACCACGGACGGACG 62.957 60.000 0.00 0.00 40.31 4.79
37 38 1.227321 TTCAACACCACGGACGGAC 60.227 57.895 0.00 0.00 0.00 4.79
38 39 1.227321 GTTCAACACCACGGACGGA 60.227 57.895 0.00 0.00 0.00 4.69
39 40 2.591311 CGTTCAACACCACGGACGG 61.591 63.158 0.00 0.00 32.58 4.79
40 41 2.925352 CGTTCAACACCACGGACG 59.075 61.111 0.00 0.00 32.58 4.79
41 42 2.629763 GCGTTCAACACCACGGAC 59.370 61.111 0.00 0.00 36.88 4.79
42 43 2.589442 GGCGTTCAACACCACGGA 60.589 61.111 0.00 0.00 36.88 4.69
43 44 2.892334 CTGGCGTTCAACACCACGG 61.892 63.158 0.00 0.00 36.88 4.94
44 45 2.631428 CTGGCGTTCAACACCACG 59.369 61.111 0.00 0.00 39.49 4.94
45 46 2.331451 GCTGGCGTTCAACACCAC 59.669 61.111 0.00 0.00 0.00 4.16
46 47 2.124529 TGCTGGCGTTCAACACCA 60.125 55.556 0.00 0.00 0.00 4.17
47 48 2.639286 CTGCTGGCGTTCAACACC 59.361 61.111 0.00 0.00 0.00 4.16
48 49 2.050985 GCTGCTGGCGTTCAACAC 60.051 61.111 0.00 0.00 0.00 3.32
49 50 2.515757 TGCTGCTGGCGTTCAACA 60.516 55.556 0.00 0.00 45.43 3.33
50 51 2.050985 GTGCTGCTGGCGTTCAAC 60.051 61.111 0.00 0.00 45.43 3.18
51 52 3.286751 GGTGCTGCTGGCGTTCAA 61.287 61.111 0.00 0.00 45.43 2.69
54 55 4.586235 AAGGGTGCTGCTGGCGTT 62.586 61.111 0.00 0.00 45.43 4.84
57 58 4.357279 AGGAAGGGTGCTGCTGGC 62.357 66.667 0.00 0.00 42.22 4.85
58 59 2.360852 CAGGAAGGGTGCTGCTGG 60.361 66.667 0.00 0.00 36.31 4.85
65 66 2.597217 TTTGGCGCAGGAAGGGTG 60.597 61.111 10.83 0.00 0.00 4.61
66 67 2.597510 GTTTGGCGCAGGAAGGGT 60.598 61.111 10.83 0.00 0.00 4.34
67 68 1.937546 GATGTTTGGCGCAGGAAGGG 61.938 60.000 10.83 0.00 0.00 3.95
68 69 1.243342 TGATGTTTGGCGCAGGAAGG 61.243 55.000 10.83 0.00 0.00 3.46
69 70 0.813184 ATGATGTTTGGCGCAGGAAG 59.187 50.000 10.83 0.00 0.00 3.46
70 71 0.810648 GATGATGTTTGGCGCAGGAA 59.189 50.000 10.83 0.00 0.00 3.36
71 72 0.322366 TGATGATGTTTGGCGCAGGA 60.322 50.000 10.83 0.00 0.00 3.86
72 73 0.099968 CTGATGATGTTTGGCGCAGG 59.900 55.000 10.83 0.00 0.00 4.85
73 74 0.806868 ACTGATGATGTTTGGCGCAG 59.193 50.000 10.83 0.00 0.00 5.18
74 75 1.068402 CAACTGATGATGTTTGGCGCA 60.068 47.619 10.83 0.00 0.00 6.09
75 76 1.068333 ACAACTGATGATGTTTGGCGC 60.068 47.619 0.00 0.00 0.00 6.53
76 77 2.587956 CACAACTGATGATGTTTGGCG 58.412 47.619 0.00 0.00 0.00 5.69
77 78 2.557924 TCCACAACTGATGATGTTTGGC 59.442 45.455 0.00 0.00 31.76 4.52
78 79 4.074259 TCTCCACAACTGATGATGTTTGG 58.926 43.478 0.00 0.00 32.34 3.28
79 80 5.392703 CCATCTCCACAACTGATGATGTTTG 60.393 44.000 0.00 0.00 39.72 2.93
80 81 4.703575 CCATCTCCACAACTGATGATGTTT 59.296 41.667 0.00 0.00 39.72 2.83
81 82 4.019051 TCCATCTCCACAACTGATGATGTT 60.019 41.667 0.00 0.00 39.72 2.71
82 83 3.520721 TCCATCTCCACAACTGATGATGT 59.479 43.478 0.00 0.00 39.72 3.06
83 84 4.146745 TCCATCTCCACAACTGATGATG 57.853 45.455 0.00 0.00 39.72 3.07
84 85 5.384145 AATCCATCTCCACAACTGATGAT 57.616 39.130 0.00 0.00 39.72 2.45
85 86 4.849813 AATCCATCTCCACAACTGATGA 57.150 40.909 0.00 0.00 39.72 2.92
86 87 5.061853 CCTAATCCATCTCCACAACTGATG 58.938 45.833 0.00 0.00 37.79 3.07
87 88 4.971282 TCCTAATCCATCTCCACAACTGAT 59.029 41.667 0.00 0.00 0.00 2.90
88 89 4.361783 TCCTAATCCATCTCCACAACTGA 58.638 43.478 0.00 0.00 0.00 3.41
89 90 4.163078 ACTCCTAATCCATCTCCACAACTG 59.837 45.833 0.00 0.00 0.00 3.16
90 91 4.163078 CACTCCTAATCCATCTCCACAACT 59.837 45.833 0.00 0.00 0.00 3.16
91 92 4.446371 CACTCCTAATCCATCTCCACAAC 58.554 47.826 0.00 0.00 0.00 3.32
92 93 3.455910 CCACTCCTAATCCATCTCCACAA 59.544 47.826 0.00 0.00 0.00 3.33
93 94 3.041211 CCACTCCTAATCCATCTCCACA 58.959 50.000 0.00 0.00 0.00 4.17
94 95 2.370189 CCCACTCCTAATCCATCTCCAC 59.630 54.545 0.00 0.00 0.00 4.02
95 96 2.250008 TCCCACTCCTAATCCATCTCCA 59.750 50.000 0.00 0.00 0.00 3.86
96 97 2.903135 CTCCCACTCCTAATCCATCTCC 59.097 54.545 0.00 0.00 0.00 3.71
97 98 3.831911 CTCTCCCACTCCTAATCCATCTC 59.168 52.174 0.00 0.00 0.00 2.75
98 99 3.439260 CCTCTCCCACTCCTAATCCATCT 60.439 52.174 0.00 0.00 0.00 2.90
99 100 2.903135 CCTCTCCCACTCCTAATCCATC 59.097 54.545 0.00 0.00 0.00 3.51
100 101 2.251338 ACCTCTCCCACTCCTAATCCAT 59.749 50.000 0.00 0.00 0.00 3.41
101 102 1.651770 ACCTCTCCCACTCCTAATCCA 59.348 52.381 0.00 0.00 0.00 3.41
102 103 2.043227 CACCTCTCCCACTCCTAATCC 58.957 57.143 0.00 0.00 0.00 3.01
103 104 2.043227 CCACCTCTCCCACTCCTAATC 58.957 57.143 0.00 0.00 0.00 1.75
104 105 1.651770 TCCACCTCTCCCACTCCTAAT 59.348 52.381 0.00 0.00 0.00 1.73
105 106 1.007238 CTCCACCTCTCCCACTCCTAA 59.993 57.143 0.00 0.00 0.00 2.69
106 107 0.631753 CTCCACCTCTCCCACTCCTA 59.368 60.000 0.00 0.00 0.00 2.94
107 108 1.390125 CTCCACCTCTCCCACTCCT 59.610 63.158 0.00 0.00 0.00 3.69
108 109 1.079438 ACTCCACCTCTCCCACTCC 59.921 63.158 0.00 0.00 0.00 3.85
109 110 0.543174 ACACTCCACCTCTCCCACTC 60.543 60.000 0.00 0.00 0.00 3.51
110 111 0.833834 CACACTCCACCTCTCCCACT 60.834 60.000 0.00 0.00 0.00 4.00
111 112 1.122019 ACACACTCCACCTCTCCCAC 61.122 60.000 0.00 0.00 0.00 4.61
112 113 1.121407 CACACACTCCACCTCTCCCA 61.121 60.000 0.00 0.00 0.00 4.37
113 114 1.122019 ACACACACTCCACCTCTCCC 61.122 60.000 0.00 0.00 0.00 4.30
114 115 0.318762 GACACACACTCCACCTCTCC 59.681 60.000 0.00 0.00 0.00 3.71
115 116 0.039074 CGACACACACTCCACCTCTC 60.039 60.000 0.00 0.00 0.00 3.20
116 117 0.755698 ACGACACACACTCCACCTCT 60.756 55.000 0.00 0.00 0.00 3.69
117 118 0.956633 TACGACACACACTCCACCTC 59.043 55.000 0.00 0.00 0.00 3.85
118 119 0.672342 GTACGACACACACTCCACCT 59.328 55.000 0.00 0.00 0.00 4.00
119 120 0.319297 GGTACGACACACACTCCACC 60.319 60.000 0.00 0.00 0.00 4.61
120 121 0.672342 AGGTACGACACACACTCCAC 59.328 55.000 0.00 0.00 0.00 4.02
121 122 0.671796 CAGGTACGACACACACTCCA 59.328 55.000 0.00 0.00 0.00 3.86
122 123 0.956633 TCAGGTACGACACACACTCC 59.043 55.000 0.00 0.00 0.00 3.85
123 124 2.787601 TTCAGGTACGACACACACTC 57.212 50.000 0.00 0.00 0.00 3.51
124 125 3.530265 TTTTCAGGTACGACACACACT 57.470 42.857 0.00 0.00 0.00 3.55
125 126 3.121126 CGATTTTCAGGTACGACACACAC 60.121 47.826 0.00 0.00 0.00 3.82
126 127 3.054166 CGATTTTCAGGTACGACACACA 58.946 45.455 0.00 0.00 0.00 3.72
127 128 2.410730 CCGATTTTCAGGTACGACACAC 59.589 50.000 0.00 0.00 0.00 3.82
128 129 2.610976 CCCGATTTTCAGGTACGACACA 60.611 50.000 0.00 0.00 0.00 3.72
129 130 1.997606 CCCGATTTTCAGGTACGACAC 59.002 52.381 0.00 0.00 0.00 3.67
130 131 1.066716 CCCCGATTTTCAGGTACGACA 60.067 52.381 0.00 0.00 0.00 4.35
131 132 1.066645 ACCCCGATTTTCAGGTACGAC 60.067 52.381 0.00 0.00 0.00 4.34
132 133 1.066716 CACCCCGATTTTCAGGTACGA 60.067 52.381 0.00 0.00 0.00 3.43
133 134 1.066716 TCACCCCGATTTTCAGGTACG 60.067 52.381 0.00 0.00 0.00 3.67
134 135 2.629051 CTCACCCCGATTTTCAGGTAC 58.371 52.381 0.00 0.00 0.00 3.34
135 136 1.065709 GCTCACCCCGATTTTCAGGTA 60.066 52.381 0.00 0.00 0.00 3.08
136 137 0.322546 GCTCACCCCGATTTTCAGGT 60.323 55.000 0.00 0.00 0.00 4.00
137 138 1.369091 CGCTCACCCCGATTTTCAGG 61.369 60.000 0.00 0.00 0.00 3.86
138 139 1.982073 GCGCTCACCCCGATTTTCAG 61.982 60.000 0.00 0.00 0.00 3.02
139 140 2.038269 GCGCTCACCCCGATTTTCA 61.038 57.895 0.00 0.00 0.00 2.69
140 141 2.761195 GGCGCTCACCCCGATTTTC 61.761 63.158 7.64 0.00 0.00 2.29
141 142 2.750237 GGCGCTCACCCCGATTTT 60.750 61.111 7.64 0.00 0.00 1.82
142 143 3.344137 ATGGCGCTCACCCCGATTT 62.344 57.895 7.64 0.00 0.00 2.17
143 144 3.797353 ATGGCGCTCACCCCGATT 61.797 61.111 7.64 0.00 0.00 3.34
144 145 4.552365 CATGGCGCTCACCCCGAT 62.552 66.667 7.64 0.00 0.00 4.18
146 147 4.155733 TACATGGCGCTCACCCCG 62.156 66.667 7.64 0.00 0.00 5.73
147 148 2.513897 GTACATGGCGCTCACCCC 60.514 66.667 7.64 0.00 0.00 4.95
148 149 2.890474 CGTACATGGCGCTCACCC 60.890 66.667 7.64 0.00 0.00 4.61
156 157 2.585247 GTCCTCCGCGTACATGGC 60.585 66.667 4.92 0.00 0.00 4.40
157 158 2.106332 GGTCCTCCGCGTACATGG 59.894 66.667 4.92 0.00 0.00 3.66
158 159 2.106332 GGGTCCTCCGCGTACATG 59.894 66.667 4.92 0.00 33.83 3.21
159 160 2.043248 AGGGTCCTCCGCGTACAT 60.043 61.111 4.92 0.00 41.52 2.29
160 161 2.753043 GAGGGTCCTCCGCGTACA 60.753 66.667 4.92 0.00 41.52 2.90
161 162 2.439883 AGAGGGTCCTCCGCGTAC 60.440 66.667 12.99 0.00 43.70 3.67
162 163 2.124403 GAGAGGGTCCTCCGCGTA 60.124 66.667 12.99 0.00 43.70 4.42
163 164 3.999297 GAGAGAGGGTCCTCCGCGT 62.999 68.421 12.99 0.00 43.70 6.01
164 165 3.213402 GAGAGAGGGTCCTCCGCG 61.213 72.222 12.99 0.00 43.70 6.46
165 166 3.213402 CGAGAGAGGGTCCTCCGC 61.213 72.222 12.99 6.42 43.70 5.54
166 167 3.213402 GCGAGAGAGGGTCCTCCG 61.213 72.222 12.99 10.72 43.70 4.63
167 168 2.835895 GGCGAGAGAGGGTCCTCC 60.836 72.222 12.99 5.57 43.70 4.30
168 169 2.043852 TGGCGAGAGAGGGTCCTC 60.044 66.667 8.91 8.91 43.03 3.71
169 170 2.363147 GTGGCGAGAGAGGGTCCT 60.363 66.667 0.00 0.00 0.00 3.85
170 171 3.827898 CGTGGCGAGAGAGGGTCC 61.828 72.222 0.00 0.00 0.00 4.46
171 172 3.827898 CCGTGGCGAGAGAGGGTC 61.828 72.222 0.00 0.00 0.00 4.46
196 197 0.107116 GACGAGGCTACTCCAGAGGA 60.107 60.000 0.00 0.00 40.77 3.71
197 198 0.394488 TGACGAGGCTACTCCAGAGG 60.394 60.000 0.00 0.00 40.77 3.69
198 199 1.336440 CATGACGAGGCTACTCCAGAG 59.664 57.143 0.00 0.00 40.77 3.35
199 200 1.393603 CATGACGAGGCTACTCCAGA 58.606 55.000 0.00 0.00 40.77 3.86
200 201 0.387202 CCATGACGAGGCTACTCCAG 59.613 60.000 0.00 0.00 40.77 3.86
201 202 2.504920 CCATGACGAGGCTACTCCA 58.495 57.895 0.00 0.00 40.77 3.86
222 223 2.429739 GCTTTTGCAGCTGACGGC 60.430 61.111 20.43 9.71 46.27 5.68
232 233 1.138247 CCTGGATCTGCGCTTTTGC 59.862 57.895 9.73 0.00 43.23 3.68
233 234 1.660560 CCCCTGGATCTGCGCTTTTG 61.661 60.000 9.73 0.00 0.00 2.44
234 235 1.379044 CCCCTGGATCTGCGCTTTT 60.379 57.895 9.73 0.00 0.00 2.27
235 236 2.273449 CCCCTGGATCTGCGCTTT 59.727 61.111 9.73 0.00 0.00 3.51
236 237 4.496336 GCCCCTGGATCTGCGCTT 62.496 66.667 9.73 0.00 0.00 4.68
239 240 4.247380 GAGGCCCCTGGATCTGCG 62.247 72.222 0.00 0.00 0.00 5.18
240 241 3.883549 GGAGGCCCCTGGATCTGC 61.884 72.222 0.00 0.00 0.00 4.26
251 252 4.785453 CTGCGACCAAGGGAGGCC 62.785 72.222 0.00 0.00 0.00 5.19
253 254 3.672295 GAGCTGCGACCAAGGGAGG 62.672 68.421 0.00 0.00 0.00 4.30
254 255 2.125350 GAGCTGCGACCAAGGGAG 60.125 66.667 0.00 0.00 0.00 4.30
255 256 4.069232 CGAGCTGCGACCAAGGGA 62.069 66.667 0.00 0.00 44.57 4.20
289 290 0.179089 CCTGGCTCGTCCTCATCAAG 60.179 60.000 0.00 0.00 35.26 3.02
290 291 1.617018 CCCTGGCTCGTCCTCATCAA 61.617 60.000 0.00 0.00 35.26 2.57
291 292 2.060383 CCCTGGCTCGTCCTCATCA 61.060 63.158 0.00 0.00 35.26 3.07
292 293 2.801631 CCCCTGGCTCGTCCTCATC 61.802 68.421 0.00 0.00 35.26 2.92
293 294 2.765807 CCCCTGGCTCGTCCTCAT 60.766 66.667 0.00 0.00 35.26 2.90
294 295 4.316823 ACCCCTGGCTCGTCCTCA 62.317 66.667 0.00 0.00 35.26 3.86
295 296 3.775654 CACCCCTGGCTCGTCCTC 61.776 72.222 0.00 0.00 35.26 3.71
296 297 4.640690 ACACCCCTGGCTCGTCCT 62.641 66.667 0.00 0.00 35.26 3.85
297 298 4.083862 GACACCCCTGGCTCGTCC 62.084 72.222 0.00 0.00 0.00 4.79
298 299 4.436998 CGACACCCCTGGCTCGTC 62.437 72.222 0.00 0.00 0.00 4.20
305 306 3.991051 AGTGACGCGACACCCCTG 61.991 66.667 32.16 0.00 41.12 4.45
306 307 3.991051 CAGTGACGCGACACCCCT 61.991 66.667 32.16 15.78 41.12 4.79
307 308 3.296709 ATCAGTGACGCGACACCCC 62.297 63.158 32.16 13.06 41.12 4.95
308 309 1.805945 GATCAGTGACGCGACACCC 60.806 63.158 32.16 18.09 41.12 4.61
309 310 1.073216 CAGATCAGTGACGCGACACC 61.073 60.000 32.16 19.62 41.12 4.16
310 311 1.073216 CCAGATCAGTGACGCGACAC 61.073 60.000 29.69 29.69 40.60 3.67
311 312 1.212751 CCAGATCAGTGACGCGACA 59.787 57.895 15.93 11.23 0.00 4.35
312 313 1.517257 CCCAGATCAGTGACGCGAC 60.517 63.158 15.93 7.62 0.00 5.19
313 314 1.248101 TTCCCAGATCAGTGACGCGA 61.248 55.000 15.93 0.00 0.00 5.87
314 315 1.078759 GTTCCCAGATCAGTGACGCG 61.079 60.000 3.53 3.53 0.00 6.01
315 316 0.037326 TGTTCCCAGATCAGTGACGC 60.037 55.000 0.00 0.00 0.00 5.19
316 317 1.673033 GGTGTTCCCAGATCAGTGACG 60.673 57.143 0.00 0.00 0.00 4.35
317 318 1.347707 TGGTGTTCCCAGATCAGTGAC 59.652 52.381 0.00 0.00 38.72 3.67
318 319 1.347707 GTGGTGTTCCCAGATCAGTGA 59.652 52.381 0.00 0.00 46.45 3.41
319 320 1.611673 GGTGGTGTTCCCAGATCAGTG 60.612 57.143 0.00 0.00 46.45 3.66
320 321 0.693049 GGTGGTGTTCCCAGATCAGT 59.307 55.000 0.00 0.00 46.45 3.41
321 322 0.391661 CGGTGGTGTTCCCAGATCAG 60.392 60.000 0.00 0.00 46.45 2.90
322 323 0.834261 TCGGTGGTGTTCCCAGATCA 60.834 55.000 0.00 0.00 46.45 2.92
323 324 0.391263 GTCGGTGGTGTTCCCAGATC 60.391 60.000 0.00 0.00 46.45 2.75
324 325 1.677552 GTCGGTGGTGTTCCCAGAT 59.322 57.895 0.00 0.00 46.45 2.90
325 326 2.863346 CGTCGGTGGTGTTCCCAGA 61.863 63.158 0.00 0.00 46.45 3.86
326 327 2.357034 CGTCGGTGGTGTTCCCAG 60.357 66.667 0.00 0.00 46.45 4.45
327 328 3.155861 ACGTCGGTGGTGTTCCCA 61.156 61.111 0.00 0.00 42.51 4.37
328 329 2.663852 CACGTCGGTGGTGTTCCC 60.664 66.667 0.00 0.00 40.58 3.97
336 337 3.642778 ATCGAAGCCCACGTCGGTG 62.643 63.158 0.00 0.00 46.09 4.94
337 338 3.352338 GATCGAAGCCCACGTCGGT 62.352 63.158 0.00 0.00 46.09 4.69
338 339 2.582498 GATCGAAGCCCACGTCGG 60.582 66.667 0.00 0.00 46.09 4.79
340 341 1.519455 CCAGATCGAAGCCCACGTC 60.519 63.158 0.00 0.00 0.00 4.34
341 342 1.541310 TTCCAGATCGAAGCCCACGT 61.541 55.000 0.00 0.00 0.00 4.49
342 343 0.807667 CTTCCAGATCGAAGCCCACG 60.808 60.000 0.00 0.00 33.33 4.94
343 344 3.071580 CTTCCAGATCGAAGCCCAC 57.928 57.895 0.00 0.00 33.33 4.61
348 349 1.272781 GTCGTGCTTCCAGATCGAAG 58.727 55.000 6.11 6.11 41.88 3.79
349 350 0.108804 GGTCGTGCTTCCAGATCGAA 60.109 55.000 0.00 0.00 32.56 3.71
350 351 1.511305 GGTCGTGCTTCCAGATCGA 59.489 57.895 0.00 0.00 0.00 3.59
351 352 1.874019 CGGTCGTGCTTCCAGATCG 60.874 63.158 0.00 0.00 32.07 3.69
352 353 0.802607 GACGGTCGTGCTTCCAGATC 60.803 60.000 0.00 0.00 0.00 2.75
353 354 1.215647 GACGGTCGTGCTTCCAGAT 59.784 57.895 0.00 0.00 0.00 2.90
354 355 2.649034 GACGGTCGTGCTTCCAGA 59.351 61.111 0.00 0.00 0.00 3.86
355 356 2.805353 CGACGGTCGTGCTTCCAG 60.805 66.667 21.68 0.00 34.72 3.86
356 357 3.263503 CTCGACGGTCGTGCTTCCA 62.264 63.158 27.53 7.93 41.35 3.53
357 358 2.504244 CTCGACGGTCGTGCTTCC 60.504 66.667 27.53 0.00 41.35 3.46
358 359 2.504244 CCTCGACGGTCGTGCTTC 60.504 66.667 27.53 0.00 41.35 3.86
359 360 2.979197 CTCCTCGACGGTCGTGCTT 61.979 63.158 27.53 0.00 41.35 3.91
360 361 3.432588 CTCCTCGACGGTCGTGCT 61.433 66.667 27.53 0.00 41.35 4.40
361 362 4.477975 CCTCCTCGACGGTCGTGC 62.478 72.222 27.53 0.00 41.35 5.34
362 363 3.812019 CCCTCCTCGACGGTCGTG 61.812 72.222 27.53 24.52 41.35 4.35
378 379 4.191015 GGATCCGGAGTTGCCCCC 62.191 72.222 11.34 0.00 0.00 5.40
379 380 1.342672 TAAGGATCCGGAGTTGCCCC 61.343 60.000 11.34 4.04 0.00 5.80
380 381 0.179054 GTAAGGATCCGGAGTTGCCC 60.179 60.000 11.34 5.91 0.00 5.36
381 382 0.179054 GGTAAGGATCCGGAGTTGCC 60.179 60.000 11.34 12.46 0.00 4.52
382 383 0.539986 TGGTAAGGATCCGGAGTTGC 59.460 55.000 11.34 6.91 0.00 4.17
383 384 3.118408 TGAATGGTAAGGATCCGGAGTTG 60.118 47.826 11.34 0.00 0.00 3.16
384 385 3.112263 TGAATGGTAAGGATCCGGAGTT 58.888 45.455 11.34 5.99 0.00 3.01
385 386 2.759355 TGAATGGTAAGGATCCGGAGT 58.241 47.619 11.34 0.00 0.00 3.85
386 387 3.580458 AGATGAATGGTAAGGATCCGGAG 59.420 47.826 11.34 0.00 0.00 4.63
387 388 3.587498 AGATGAATGGTAAGGATCCGGA 58.413 45.455 6.61 6.61 0.00 5.14
388 389 4.319177 GAAGATGAATGGTAAGGATCCGG 58.681 47.826 5.98 0.00 0.00 5.14
389 390 3.990469 CGAAGATGAATGGTAAGGATCCG 59.010 47.826 5.98 0.00 0.00 4.18
390 391 3.748568 GCGAAGATGAATGGTAAGGATCC 59.251 47.826 2.48 2.48 0.00 3.36
391 392 3.748568 GGCGAAGATGAATGGTAAGGATC 59.251 47.826 0.00 0.00 0.00 3.36
392 393 3.136443 TGGCGAAGATGAATGGTAAGGAT 59.864 43.478 0.00 0.00 0.00 3.24
393 394 2.503765 TGGCGAAGATGAATGGTAAGGA 59.496 45.455 0.00 0.00 0.00 3.36
394 395 2.874701 CTGGCGAAGATGAATGGTAAGG 59.125 50.000 0.00 0.00 0.00 2.69
395 396 3.535561 ACTGGCGAAGATGAATGGTAAG 58.464 45.455 0.00 0.00 0.00 2.34
396 397 3.627395 ACTGGCGAAGATGAATGGTAA 57.373 42.857 0.00 0.00 0.00 2.85
397 398 3.270027 CAACTGGCGAAGATGAATGGTA 58.730 45.455 0.00 0.00 30.34 3.25
398 399 2.086869 CAACTGGCGAAGATGAATGGT 58.913 47.619 0.00 0.00 30.34 3.55
399 400 1.202222 GCAACTGGCGAAGATGAATGG 60.202 52.381 0.00 0.00 30.34 3.16
400 401 1.202222 GGCAACTGGCGAAGATGAATG 60.202 52.381 0.00 0.00 46.16 2.67
401 402 1.098050 GGCAACTGGCGAAGATGAAT 58.902 50.000 0.00 0.00 46.16 2.57
402 403 0.250684 TGGCAACTGGCGAAGATGAA 60.251 50.000 0.00 0.00 46.16 2.57
403 404 0.674581 CTGGCAACTGGCGAAGATGA 60.675 55.000 0.00 0.00 46.16 2.92
404 405 0.957395 ACTGGCAACTGGCGAAGATG 60.957 55.000 0.00 0.00 46.16 2.90
405 406 0.957395 CACTGGCAACTGGCGAAGAT 60.957 55.000 0.00 0.00 46.16 2.40
406 407 1.597854 CACTGGCAACTGGCGAAGA 60.598 57.895 0.00 0.00 46.16 2.87
407 408 1.845809 GACACTGGCAACTGGCGAAG 61.846 60.000 0.00 0.00 46.16 3.79
408 409 1.891919 GACACTGGCAACTGGCGAA 60.892 57.895 0.00 0.00 46.16 4.70
409 410 2.280797 GACACTGGCAACTGGCGA 60.281 61.111 0.00 0.00 46.16 5.54
410 411 3.716006 CGACACTGGCAACTGGCG 61.716 66.667 5.75 5.75 46.16 5.69
411 412 4.030452 GCGACACTGGCAACTGGC 62.030 66.667 0.00 0.00 43.74 4.85
412 413 3.357079 GGCGACACTGGCAACTGG 61.357 66.667 0.00 0.00 40.36 4.00
413 414 3.716006 CGGCGACACTGGCAACTG 61.716 66.667 0.00 0.00 42.06 3.16
414 415 4.235762 ACGGCGACACTGGCAACT 62.236 61.111 16.62 0.00 37.61 3.16
415 416 4.012895 CACGGCGACACTGGCAAC 62.013 66.667 16.62 0.00 0.00 4.17
430 431 3.403558 GTCTCCCTCCTGCCCCAC 61.404 72.222 0.00 0.00 0.00 4.61
432 433 4.779733 TCGTCTCCCTCCTGCCCC 62.780 72.222 0.00 0.00 0.00 5.80
433 434 3.462678 GTCGTCTCCCTCCTGCCC 61.463 72.222 0.00 0.00 0.00 5.36
434 435 2.680352 TGTCGTCTCCCTCCTGCC 60.680 66.667 0.00 0.00 0.00 4.85
435 436 1.040339 ATCTGTCGTCTCCCTCCTGC 61.040 60.000 0.00 0.00 0.00 4.85
436 437 0.743688 CATCTGTCGTCTCCCTCCTG 59.256 60.000 0.00 0.00 0.00 3.86
437 438 0.396417 CCATCTGTCGTCTCCCTCCT 60.396 60.000 0.00 0.00 0.00 3.69
438 439 1.395826 CCCATCTGTCGTCTCCCTCC 61.396 65.000 0.00 0.00 0.00 4.30
439 440 1.395826 CCCCATCTGTCGTCTCCCTC 61.396 65.000 0.00 0.00 0.00 4.30
440 441 1.381872 CCCCATCTGTCGTCTCCCT 60.382 63.158 0.00 0.00 0.00 4.20
441 442 1.381327 TCCCCATCTGTCGTCTCCC 60.381 63.158 0.00 0.00 0.00 4.30
442 443 1.817209 GTCCCCATCTGTCGTCTCC 59.183 63.158 0.00 0.00 0.00 3.71
443 444 1.433879 CGTCCCCATCTGTCGTCTC 59.566 63.158 0.00 0.00 0.00 3.36
444 445 2.052690 CCGTCCCCATCTGTCGTCT 61.053 63.158 0.00 0.00 0.00 4.18
445 446 2.494918 CCGTCCCCATCTGTCGTC 59.505 66.667 0.00 0.00 0.00 4.20
446 447 3.075005 CCCGTCCCCATCTGTCGT 61.075 66.667 0.00 0.00 0.00 4.34
447 448 4.530857 GCCCGTCCCCATCTGTCG 62.531 72.222 0.00 0.00 0.00 4.35
448 449 2.666596 GATGCCCGTCCCCATCTGTC 62.667 65.000 0.00 0.00 35.96 3.51
449 450 2.692368 ATGCCCGTCCCCATCTGT 60.692 61.111 0.00 0.00 0.00 3.41
450 451 2.111878 GATGCCCGTCCCCATCTG 59.888 66.667 0.00 0.00 35.96 2.90
451 452 2.366837 TGATGCCCGTCCCCATCT 60.367 61.111 0.00 0.00 38.84 2.90
452 453 2.111878 CTGATGCCCGTCCCCATC 59.888 66.667 0.00 0.00 38.60 3.51
453 454 2.692368 ACTGATGCCCGTCCCCAT 60.692 61.111 0.00 0.00 0.00 4.00
454 455 3.716195 CACTGATGCCCGTCCCCA 61.716 66.667 0.00 0.00 0.00 4.96
455 456 4.489771 CCACTGATGCCCGTCCCC 62.490 72.222 0.00 0.00 0.00 4.81
456 457 4.489771 CCCACTGATGCCCGTCCC 62.490 72.222 0.00 0.00 0.00 4.46
457 458 4.489771 CCCCACTGATGCCCGTCC 62.490 72.222 0.00 0.00 0.00 4.79
458 459 3.391665 CTCCCCACTGATGCCCGTC 62.392 68.421 0.00 0.00 0.00 4.79
459 460 3.402681 CTCCCCACTGATGCCCGT 61.403 66.667 0.00 0.00 0.00 5.28
460 461 3.083349 TCTCCCCACTGATGCCCG 61.083 66.667 0.00 0.00 0.00 6.13
461 462 2.592308 GTCTCCCCACTGATGCCC 59.408 66.667 0.00 0.00 0.00 5.36
462 463 1.899437 TTCGTCTCCCCACTGATGCC 61.899 60.000 0.00 0.00 0.00 4.40
463 464 0.036388 TTTCGTCTCCCCACTGATGC 60.036 55.000 0.00 0.00 0.00 3.91
464 465 1.406069 CCTTTCGTCTCCCCACTGATG 60.406 57.143 0.00 0.00 0.00 3.07
465 466 0.905357 CCTTTCGTCTCCCCACTGAT 59.095 55.000 0.00 0.00 0.00 2.90
466 467 1.192146 CCCTTTCGTCTCCCCACTGA 61.192 60.000 0.00 0.00 0.00 3.41
467 468 1.296715 CCCTTTCGTCTCCCCACTG 59.703 63.158 0.00 0.00 0.00 3.66
468 469 1.918800 CCCCTTTCGTCTCCCCACT 60.919 63.158 0.00 0.00 0.00 4.00
469 470 1.272554 ATCCCCTTTCGTCTCCCCAC 61.273 60.000 0.00 0.00 0.00 4.61
470 471 0.549169 AATCCCCTTTCGTCTCCCCA 60.549 55.000 0.00 0.00 0.00 4.96
471 472 0.624254 AAATCCCCTTTCGTCTCCCC 59.376 55.000 0.00 0.00 0.00 4.81
472 473 1.280998 TCAAATCCCCTTTCGTCTCCC 59.719 52.381 0.00 0.00 0.00 4.30
473 474 2.357075 GTCAAATCCCCTTTCGTCTCC 58.643 52.381 0.00 0.00 0.00 3.71
474 475 2.357075 GGTCAAATCCCCTTTCGTCTC 58.643 52.381 0.00 0.00 0.00 3.36
475 476 1.338769 CGGTCAAATCCCCTTTCGTCT 60.339 52.381 0.00 0.00 0.00 4.18
476 477 1.084289 CGGTCAAATCCCCTTTCGTC 58.916 55.000 0.00 0.00 0.00 4.20
477 478 0.958876 GCGGTCAAATCCCCTTTCGT 60.959 55.000 0.00 0.00 0.00 3.85
478 479 1.800681 GCGGTCAAATCCCCTTTCG 59.199 57.895 0.00 0.00 0.00 3.46
479 480 1.654023 CCGCGGTCAAATCCCCTTTC 61.654 60.000 19.50 0.00 0.00 2.62
480 481 1.677633 CCGCGGTCAAATCCCCTTT 60.678 57.895 19.50 0.00 0.00 3.11
481 482 2.045340 CCGCGGTCAAATCCCCTT 60.045 61.111 19.50 0.00 0.00 3.95
482 483 4.109675 CCCGCGGTCAAATCCCCT 62.110 66.667 26.12 0.00 0.00 4.79
483 484 3.931190 AACCCGCGGTCAAATCCCC 62.931 63.158 26.12 0.00 33.12 4.81
484 485 2.360726 AACCCGCGGTCAAATCCC 60.361 61.111 26.12 0.00 33.12 3.85
485 486 1.238625 TTCAACCCGCGGTCAAATCC 61.239 55.000 26.12 0.00 33.12 3.01
486 487 0.808755 ATTCAACCCGCGGTCAAATC 59.191 50.000 26.12 0.00 33.12 2.17
487 488 2.116827 TATTCAACCCGCGGTCAAAT 57.883 45.000 26.12 18.80 33.12 2.32
488 489 2.116827 ATATTCAACCCGCGGTCAAA 57.883 45.000 26.12 12.95 33.12 2.69
489 490 2.168936 AGTATATTCAACCCGCGGTCAA 59.831 45.455 26.12 11.03 33.12 3.18
490 491 1.758280 AGTATATTCAACCCGCGGTCA 59.242 47.619 26.12 2.60 33.12 4.02
491 492 2.521105 AGTATATTCAACCCGCGGTC 57.479 50.000 26.12 1.13 33.12 4.79
492 493 4.405116 TTTAGTATATTCAACCCGCGGT 57.595 40.909 26.12 9.63 37.65 5.68
493 494 5.934935 ATTTTAGTATATTCAACCCGCGG 57.065 39.130 21.04 21.04 0.00 6.46
494 495 7.360607 CCCTTATTTTAGTATATTCAACCCGCG 60.361 40.741 0.00 0.00 0.00 6.46
495 496 7.094506 CCCCTTATTTTAGTATATTCAACCCGC 60.095 40.741 0.00 0.00 0.00 6.13
496 497 7.392393 CCCCCTTATTTTAGTATATTCAACCCG 59.608 40.741 0.00 0.00 0.00 5.28
497 498 7.177921 GCCCCCTTATTTTAGTATATTCAACCC 59.822 40.741 0.00 0.00 0.00 4.11
498 499 7.948447 AGCCCCCTTATTTTAGTATATTCAACC 59.052 37.037 0.00 0.00 0.00 3.77
499 500 8.935614 AGCCCCCTTATTTTAGTATATTCAAC 57.064 34.615 0.00 0.00 0.00 3.18
500 501 9.945633 AAAGCCCCCTTATTTTAGTATATTCAA 57.054 29.630 0.00 0.00 0.00 2.69
501 502 9.945633 AAAAGCCCCCTTATTTTAGTATATTCA 57.054 29.630 0.00 0.00 0.00 2.57
506 507 8.562635 TGTAGAAAAGCCCCCTTATTTTAGTAT 58.437 33.333 0.00 0.00 0.00 2.12
507 508 7.931046 TGTAGAAAAGCCCCCTTATTTTAGTA 58.069 34.615 0.00 0.00 0.00 1.82
508 509 6.796648 TGTAGAAAAGCCCCCTTATTTTAGT 58.203 36.000 0.00 0.00 0.00 2.24
509 510 7.712204 TTGTAGAAAAGCCCCCTTATTTTAG 57.288 36.000 0.00 0.00 0.00 1.85
510 511 8.369424 GTTTTGTAGAAAAGCCCCCTTATTTTA 58.631 33.333 0.00 0.00 31.57 1.52
511 512 7.147461 TGTTTTGTAGAAAAGCCCCCTTATTTT 60.147 33.333 0.00 0.00 31.57 1.82
512 513 6.327887 TGTTTTGTAGAAAAGCCCCCTTATTT 59.672 34.615 0.00 0.00 31.57 1.40
513 514 5.841783 TGTTTTGTAGAAAAGCCCCCTTATT 59.158 36.000 0.00 0.00 31.57 1.40
514 515 5.399113 TGTTTTGTAGAAAAGCCCCCTTAT 58.601 37.500 0.00 0.00 31.57 1.73
515 516 4.805744 TGTTTTGTAGAAAAGCCCCCTTA 58.194 39.130 0.00 0.00 31.57 2.69
516 517 3.648739 TGTTTTGTAGAAAAGCCCCCTT 58.351 40.909 0.00 0.00 31.57 3.95
517 518 3.322191 TGTTTTGTAGAAAAGCCCCCT 57.678 42.857 0.00 0.00 31.57 4.79
518 519 4.409718 TTTGTTTTGTAGAAAAGCCCCC 57.590 40.909 0.00 0.00 31.57 5.40
519 520 5.179533 TGTTTTGTTTTGTAGAAAAGCCCC 58.820 37.500 0.00 0.00 30.51 5.80
520 521 5.872617 ACTGTTTTGTTTTGTAGAAAAGCCC 59.127 36.000 0.00 0.00 30.51 5.19
521 522 6.961359 ACTGTTTTGTTTTGTAGAAAAGCC 57.039 33.333 0.00 0.00 30.51 4.35
522 523 9.516314 AGATACTGTTTTGTTTTGTAGAAAAGC 57.484 29.630 0.00 0.00 30.51 3.51
526 527 9.391006 ACTGAGATACTGTTTTGTTTTGTAGAA 57.609 29.630 0.00 0.00 0.00 2.10
527 528 8.958119 ACTGAGATACTGTTTTGTTTTGTAGA 57.042 30.769 0.00 0.00 0.00 2.59
531 532 8.958043 GCTAAACTGAGATACTGTTTTGTTTTG 58.042 33.333 0.00 0.00 44.21 2.44
532 533 8.135529 GGCTAAACTGAGATACTGTTTTGTTTT 58.864 33.333 0.00 0.00 44.21 2.43
533 534 7.284489 TGGCTAAACTGAGATACTGTTTTGTTT 59.716 33.333 0.00 0.00 44.21 2.83
534 535 6.770785 TGGCTAAACTGAGATACTGTTTTGTT 59.229 34.615 0.00 0.00 44.21 2.83
535 536 6.204882 GTGGCTAAACTGAGATACTGTTTTGT 59.795 38.462 0.00 0.00 44.21 2.83
536 537 6.428159 AGTGGCTAAACTGAGATACTGTTTTG 59.572 38.462 0.00 0.00 44.21 2.44
537 538 6.534634 AGTGGCTAAACTGAGATACTGTTTT 58.465 36.000 0.00 0.00 44.21 2.43
538 539 6.115448 AGTGGCTAAACTGAGATACTGTTT 57.885 37.500 0.00 0.00 46.69 2.83
539 540 5.746990 AGTGGCTAAACTGAGATACTGTT 57.253 39.130 0.00 0.00 41.22 3.16
540 541 5.746990 AAGTGGCTAAACTGAGATACTGT 57.253 39.130 0.00 0.00 0.00 3.55
541 542 8.547967 TTTTAAGTGGCTAAACTGAGATACTG 57.452 34.615 0.00 0.00 0.00 2.74
564 565 9.502091 GCAAAAGGATAATTAACCCTTCTTTTT 57.498 29.630 17.65 10.90 39.21 1.94
638 639 1.340114 GGACTAGGGGCAAAACTGAGG 60.340 57.143 0.00 0.00 0.00 3.86
739 740 5.242838 TGAATAAAATTGGTCGTTTCTGCCT 59.757 36.000 0.00 0.00 0.00 4.75
750 751 4.279671 TGCAACGGTCTGAATAAAATTGGT 59.720 37.500 0.00 0.00 0.00 3.67
855 856 0.960861 TCTCTGTCGCCGTGATCACT 60.961 55.000 22.95 0.00 0.00 3.41
860 861 2.983592 TGCTCTCTGTCGCCGTGA 60.984 61.111 0.00 0.00 0.00 4.35
1085 1088 4.077184 TTCGATCAACGCCCGCCT 62.077 61.111 0.00 0.00 42.26 5.52
1109 1112 0.679505 CTGGTTCCTCGGTGTCTGAA 59.320 55.000 0.00 0.00 0.00 3.02
1263 1411 0.251354 GAGTCTTGGCCAGAGCATCA 59.749 55.000 5.11 0.00 42.56 3.07
1774 2025 3.360340 GCACTTGGCTCTGCGCTT 61.360 61.111 9.73 0.00 40.25 4.68
2160 2414 2.284405 GGGTTCGAGTCCCCAGGA 60.284 66.667 14.49 0.00 40.88 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.