Multiple sequence alignment - TraesCS1B01G327800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G327800 chr1B 100.000 3519 0 0 1 3519 553905252 553901734 0.000000e+00 6499
1 TraesCS1B01G327800 chr1B 88.168 955 94 9 1 942 671549988 671549040 0.000000e+00 1120
2 TraesCS1B01G327800 chr2B 95.825 1964 66 6 943 2906 657730664 657728717 0.000000e+00 3158
3 TraesCS1B01G327800 chr2B 90.000 1220 80 16 1103 2310 660158997 660157808 0.000000e+00 1539
4 TraesCS1B01G327800 chr2B 96.438 365 12 1 3155 3519 657728730 657728367 5.030000e-168 601
5 TraesCS1B01G327800 chr2B 92.531 241 17 1 2906 3145 18005447 18005687 9.350000e-91 344
6 TraesCS1B01G327800 chr2B 91.837 245 19 1 2902 3145 18010431 18010675 1.210000e-89 340
7 TraesCS1B01G327800 chr5A 94.800 1654 68 5 943 2587 490584590 490586234 0.000000e+00 2562
8 TraesCS1B01G327800 chr5A 89.590 951 87 6 1 944 554077314 554078259 0.000000e+00 1197
9 TraesCS1B01G327800 chr5A 96.389 360 9 1 3164 3519 490587441 490587800 1.090000e-164 590
10 TraesCS1B01G327800 chr5A 94.586 314 15 2 2576 2888 490587090 490587402 5.280000e-133 484
11 TraesCS1B01G327800 chr4B 95.277 1588 63 4 943 2530 86464536 86462961 0.000000e+00 2507
12 TraesCS1B01G327800 chr4B 92.426 845 56 2 1 837 654445914 654446758 0.000000e+00 1199
13 TraesCS1B01G327800 chr4B 92.426 845 56 2 1 837 654447755 654446911 0.000000e+00 1199
14 TraesCS1B01G327800 chr4B 93.820 356 13 3 2533 2888 86450645 86450299 8.650000e-146 527
15 TraesCS1B01G327800 chr4B 91.848 368 18 4 3164 3519 86450259 86449892 1.460000e-138 503
16 TraesCS1B01G327800 chr2A 93.101 1174 61 8 1147 2310 694472663 694471500 0.000000e+00 1701
17 TraesCS1B01G327800 chr2A 91.892 259 18 2 2906 3163 6249492 6249236 3.340000e-95 359
18 TraesCS1B01G327800 chr2A 89.888 267 23 3 2902 3167 6244547 6244284 1.210000e-89 340
19 TraesCS1B01G327800 chr2D 91.450 1228 74 13 1104 2310 554309604 554308387 0.000000e+00 1657
20 TraesCS1B01G327800 chr4A 93.340 946 56 2 1 940 12182029 12181085 0.000000e+00 1391
21 TraesCS1B01G327800 chr6B 90.757 898 77 1 1 892 213332046 213332943 0.000000e+00 1194
22 TraesCS1B01G327800 chr6B 93.798 258 16 0 2906 3163 30254838 30255095 4.260000e-104 388
23 TraesCS1B01G327800 chr6B 93.182 264 18 0 2902 3165 30259792 30260055 4.260000e-104 388
24 TraesCS1B01G327800 chr6B 87.582 306 32 5 3216 3519 19664789 19664488 2.010000e-92 350
25 TraesCS1B01G327800 chr6B 87.055 309 34 5 3213 3519 19605804 19605500 9.350000e-91 344
26 TraesCS1B01G327800 chr6B 87.097 310 33 5 3213 3519 19642790 19642485 9.350000e-91 344
27 TraesCS1B01G327800 chr6B 86.731 309 35 5 3213 3519 19719557 19719253 4.350000e-89 339
28 TraesCS1B01G327800 chr4D 88.223 951 99 8 1 942 20502769 20501823 0.000000e+00 1123
29 TraesCS1B01G327800 chr1A 87.355 949 111 4 1 942 45286513 45287459 0.000000e+00 1079
30 TraesCS1B01G327800 chr7B 87.355 949 107 7 1 942 739172332 739173274 0.000000e+00 1075
31 TraesCS1B01G327800 chr6A 93.056 360 21 1 3164 3519 485777952 485777593 1.120000e-144 523
32 TraesCS1B01G327800 chr6A 86.258 473 35 9 2312 2779 485778585 485778138 1.470000e-133 486
33 TraesCS1B01G327800 chr6A 88.272 162 9 2 943 1104 485778803 485778652 6.000000e-43 185
34 TraesCS1B01G327800 chr7A 92.458 358 25 1 3164 3519 678002674 678003031 8.710000e-141 510
35 TraesCS1B01G327800 chr7A 86.469 473 38 7 2312 2779 678002037 678002488 2.440000e-136 496
36 TraesCS1B01G327800 chr7A 88.889 162 8 4 943 1104 678001818 678001969 1.290000e-44 191
37 TraesCS1B01G327800 chrUn 90.672 268 16 3 2902 3168 31811365 31811106 7.230000e-92 348
38 TraesCS1B01G327800 chrUn 90.672 268 16 3 2902 3168 308873080 308873339 7.230000e-92 348
39 TraesCS1B01G327800 chrUn 90.347 259 16 3 2906 3163 31859466 31859216 7.280000e-87 331


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G327800 chr1B 553901734 553905252 3518 True 6499.0 6499 100.000000 1 3519 1 chr1B.!!$R1 3518
1 TraesCS1B01G327800 chr1B 671549040 671549988 948 True 1120.0 1120 88.168000 1 942 1 chr1B.!!$R2 941
2 TraesCS1B01G327800 chr2B 657728367 657730664 2297 True 1879.5 3158 96.131500 943 3519 2 chr2B.!!$R2 2576
3 TraesCS1B01G327800 chr2B 660157808 660158997 1189 True 1539.0 1539 90.000000 1103 2310 1 chr2B.!!$R1 1207
4 TraesCS1B01G327800 chr5A 490584590 490587800 3210 False 1212.0 2562 95.258333 943 3519 3 chr5A.!!$F2 2576
5 TraesCS1B01G327800 chr5A 554077314 554078259 945 False 1197.0 1197 89.590000 1 944 1 chr5A.!!$F1 943
6 TraesCS1B01G327800 chr4B 86462961 86464536 1575 True 2507.0 2507 95.277000 943 2530 1 chr4B.!!$R1 1587
7 TraesCS1B01G327800 chr4B 654445914 654446758 844 False 1199.0 1199 92.426000 1 837 1 chr4B.!!$F1 836
8 TraesCS1B01G327800 chr4B 654446911 654447755 844 True 1199.0 1199 92.426000 1 837 1 chr4B.!!$R2 836
9 TraesCS1B01G327800 chr4B 86449892 86450645 753 True 515.0 527 92.834000 2533 3519 2 chr4B.!!$R3 986
10 TraesCS1B01G327800 chr2A 694471500 694472663 1163 True 1701.0 1701 93.101000 1147 2310 1 chr2A.!!$R3 1163
11 TraesCS1B01G327800 chr2D 554308387 554309604 1217 True 1657.0 1657 91.450000 1104 2310 1 chr2D.!!$R1 1206
12 TraesCS1B01G327800 chr4A 12181085 12182029 944 True 1391.0 1391 93.340000 1 940 1 chr4A.!!$R1 939
13 TraesCS1B01G327800 chr6B 213332046 213332943 897 False 1194.0 1194 90.757000 1 892 1 chr6B.!!$F3 891
14 TraesCS1B01G327800 chr4D 20501823 20502769 946 True 1123.0 1123 88.223000 1 942 1 chr4D.!!$R1 941
15 TraesCS1B01G327800 chr1A 45286513 45287459 946 False 1079.0 1079 87.355000 1 942 1 chr1A.!!$F1 941
16 TraesCS1B01G327800 chr7B 739172332 739173274 942 False 1075.0 1075 87.355000 1 942 1 chr7B.!!$F1 941
17 TraesCS1B01G327800 chr6A 485777593 485778803 1210 True 398.0 523 89.195333 943 3519 3 chr6A.!!$R1 2576
18 TraesCS1B01G327800 chr7A 678001818 678003031 1213 False 399.0 510 89.272000 943 3519 3 chr7A.!!$F1 2576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 325 1.138883 GCACCGTCGTATGAGCTCA 59.861 57.895 20.79 20.79 0.0 4.26 F
2027 2076 0.747852 TACACAACAGCGGAGTCACA 59.252 50.000 0.00 0.00 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2099 0.672342 AAAGAGCAGGCAAGCAACAG 59.328 50.0 4.78 0.00 36.85 3.16 R
2939 3945 0.105408 ATAACATGTACGGCGTCCCC 59.895 55.0 19.21 6.57 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.846193 GTACTCCTTGGACTTGTTGCA 58.154 47.619 0.00 0.00 0.00 4.08
46 47 2.671396 GCTGGAATGCTCAAATGCAAAG 59.329 45.455 0.00 0.00 46.61 2.77
59 60 6.142139 TCAAATGCAAAGATGTTAACACTCG 58.858 36.000 11.22 6.78 0.00 4.18
145 148 4.329392 TGAGTATCACAGTCTCGTTGGTA 58.671 43.478 0.00 0.00 42.56 3.25
195 198 5.338219 GCCTGATATCTCCTATGCAGTCAAT 60.338 44.000 3.98 0.00 0.00 2.57
226 229 1.153524 TTTCTGCATGCACCCAGGT 59.846 52.632 18.46 0.00 0.00 4.00
322 325 1.138883 GCACCGTCGTATGAGCTCA 59.861 57.895 20.79 20.79 0.00 4.26
374 377 1.368950 CGGATGACAGGCGATCCAT 59.631 57.895 0.00 0.00 38.50 3.41
450 453 1.502163 AAGCAACAGTGTCTCGCAGC 61.502 55.000 13.00 4.49 0.00 5.25
466 469 1.896694 AGCAGTACTGAGGCTGAGC 59.103 57.895 27.08 8.26 36.34 4.26
526 529 4.393371 GGGTACAATCTTTGTTGAGAGAGC 59.607 45.833 0.00 0.00 42.22 4.09
528 531 6.398918 GGTACAATCTTTGTTGAGAGAGCTA 58.601 40.000 0.00 0.00 42.22 3.32
529 532 7.044798 GGTACAATCTTTGTTGAGAGAGCTAT 58.955 38.462 0.00 0.00 42.22 2.97
551 554 3.080121 CCCTCAAGCTCGCCCTCT 61.080 66.667 0.00 0.00 0.00 3.69
565 568 1.691482 GCCCTCTGGTCCTATGGTGTA 60.691 57.143 0.00 0.00 0.00 2.90
936 953 4.024556 CGAGCAGTTCCCAAATCATATGTC 60.025 45.833 1.90 0.00 0.00 3.06
1054 1071 1.538876 CTGGTCCAGTTCTCCCCCA 60.539 63.158 11.09 0.00 0.00 4.96
1195 1224 1.534595 CTGGCTTGCTTCAGTTCAGTC 59.465 52.381 0.00 0.00 0.00 3.51
1196 1225 1.141657 TGGCTTGCTTCAGTTCAGTCT 59.858 47.619 0.00 0.00 0.00 3.24
1197 1226 2.225467 GGCTTGCTTCAGTTCAGTCTT 58.775 47.619 0.00 0.00 0.00 3.01
1198 1227 2.225255 GGCTTGCTTCAGTTCAGTCTTC 59.775 50.000 0.00 0.00 0.00 2.87
1199 1228 2.874701 GCTTGCTTCAGTTCAGTCTTCA 59.125 45.455 0.00 0.00 0.00 3.02
1200 1229 3.059051 GCTTGCTTCAGTTCAGTCTTCAG 60.059 47.826 0.00 0.00 0.00 3.02
1201 1230 3.827008 TGCTTCAGTTCAGTCTTCAGT 57.173 42.857 0.00 0.00 0.00 3.41
1205 1234 3.758755 TCAGTTCAGTCTTCAGTGCAT 57.241 42.857 0.00 0.00 0.00 3.96
1285 1316 3.872696 TGTTATGCGACCTGTGATTCAT 58.127 40.909 0.00 0.00 0.00 2.57
1291 1322 1.066215 CGACCTGTGATTCATGGGTCA 60.066 52.381 26.07 6.41 44.56 4.02
1497 1538 7.645340 ACATTTTCTGTTCTGAAAGTTTCATCG 59.355 33.333 18.35 8.46 34.98 3.84
1623 1672 1.269988 GGCGATGCTCTGATTCAGCTA 60.270 52.381 8.89 0.00 37.79 3.32
1716 1765 6.349300 AGTTTCACGCCAGTATTCAGATAAT 58.651 36.000 0.00 0.00 0.00 1.28
1751 1800 4.694339 AGCTATCTCGAAGGCGTAATTTT 58.306 39.130 0.00 0.00 38.98 1.82
1867 1916 6.764560 TCAAAAGGAGTGTAAGAAACTGGTAC 59.235 38.462 0.00 0.00 0.00 3.34
2018 2067 5.111989 TCTCTATCTTGCATACACAACAGC 58.888 41.667 0.00 0.00 0.00 4.40
2027 2076 0.747852 TACACAACAGCGGAGTCACA 59.252 50.000 0.00 0.00 0.00 3.58
2050 2099 6.016276 ACATTCAGAACCATTCAAACAGGTAC 60.016 38.462 0.00 0.00 34.63 3.34
2094 2144 5.581479 CGGCATGAAAAATTGGATTTGATGA 59.419 36.000 0.00 0.00 34.56 2.92
2310 2362 5.581126 TGCCATAATTCTTGTCATGGTTC 57.419 39.130 4.91 0.00 40.13 3.62
2451 2507 1.913951 TTGGTGGCAGCGAGATCCAT 61.914 55.000 12.58 0.00 31.83 3.41
2488 2544 0.604578 GCAGCAAGATGGGCAAAGAA 59.395 50.000 0.00 0.00 0.00 2.52
2600 3527 5.007682 GGTTGCAGGTTTGAGGATAACTAA 58.992 41.667 0.00 0.00 0.00 2.24
2702 3630 6.157297 TCTCCCTCGGTTAATCCTTTTTATCA 59.843 38.462 0.00 0.00 0.00 2.15
2739 3667 6.481976 CACAATTCCTTTTTCCCTTGGTTAAC 59.518 38.462 0.00 0.00 0.00 2.01
2802 3772 8.806146 ACTGAGCAATGGTAATTATTTTGTTCT 58.194 29.630 15.75 5.12 31.39 3.01
2827 3797 2.683211 AACTCCAGGTTTGGCTGATT 57.317 45.000 0.00 0.00 44.63 2.57
2828 3798 3.806949 AACTCCAGGTTTGGCTGATTA 57.193 42.857 0.00 0.00 44.63 1.75
2829 3799 3.073274 ACTCCAGGTTTGGCTGATTAC 57.927 47.619 0.00 0.00 44.63 1.89
2830 3800 2.644798 ACTCCAGGTTTGGCTGATTACT 59.355 45.455 0.00 0.00 44.63 2.24
2831 3801 3.074538 ACTCCAGGTTTGGCTGATTACTT 59.925 43.478 0.00 0.00 44.63 2.24
2832 3802 3.420893 TCCAGGTTTGGCTGATTACTTG 58.579 45.455 0.00 0.00 44.63 3.16
2833 3803 2.493278 CCAGGTTTGGCTGATTACTTGG 59.507 50.000 0.00 0.00 37.73 3.61
2834 3804 3.420893 CAGGTTTGGCTGATTACTTGGA 58.579 45.455 0.00 0.00 0.00 3.53
2904 3910 8.714906 AGCCAGACTAACAATATGTAATAACCT 58.285 33.333 0.00 0.00 29.06 3.50
2905 3911 9.338622 GCCAGACTAACAATATGTAATAACCTT 57.661 33.333 0.00 0.00 29.06 3.50
2914 3920 8.458843 ACAATATGTAATAACCTTGTGTGAAGC 58.541 33.333 0.00 0.00 29.06 3.86
2915 3921 5.545658 ATGTAATAACCTTGTGTGAAGCG 57.454 39.130 0.00 0.00 0.00 4.68
2916 3922 3.749088 TGTAATAACCTTGTGTGAAGCGG 59.251 43.478 0.00 0.00 0.00 5.52
2917 3923 2.851263 ATAACCTTGTGTGAAGCGGA 57.149 45.000 0.00 0.00 0.00 5.54
2918 3924 2.623878 TAACCTTGTGTGAAGCGGAA 57.376 45.000 0.00 0.00 0.00 4.30
2919 3925 1.757682 AACCTTGTGTGAAGCGGAAA 58.242 45.000 0.00 0.00 0.00 3.13
2920 3926 1.757682 ACCTTGTGTGAAGCGGAAAA 58.242 45.000 0.00 0.00 0.00 2.29
2921 3927 1.404035 ACCTTGTGTGAAGCGGAAAAC 59.596 47.619 0.00 0.00 0.00 2.43
2923 3929 1.063469 CTTGTGTGAAGCGGAAAACGT 59.937 47.619 0.00 0.00 46.52 3.99
2924 3930 0.653636 TGTGTGAAGCGGAAAACGTC 59.346 50.000 0.00 0.00 46.52 4.34
2925 3931 0.935196 GTGTGAAGCGGAAAACGTCT 59.065 50.000 0.00 0.00 46.52 4.18
2926 3932 1.329599 GTGTGAAGCGGAAAACGTCTT 59.670 47.619 0.00 0.00 46.52 3.01
2927 3933 2.540931 GTGTGAAGCGGAAAACGTCTTA 59.459 45.455 0.00 0.00 46.52 2.10
2928 3934 2.540931 TGTGAAGCGGAAAACGTCTTAC 59.459 45.455 0.00 0.00 46.52 2.34
2929 3935 2.096565 GTGAAGCGGAAAACGTCTTACC 60.097 50.000 0.00 0.00 46.52 2.85
2930 3936 2.224113 TGAAGCGGAAAACGTCTTACCT 60.224 45.455 0.00 0.00 46.52 3.08
2931 3937 2.075979 AGCGGAAAACGTCTTACCTC 57.924 50.000 0.00 0.00 46.52 3.85
2932 3938 1.342174 AGCGGAAAACGTCTTACCTCA 59.658 47.619 0.00 0.00 46.52 3.86
2933 3939 2.137523 GCGGAAAACGTCTTACCTCAA 58.862 47.619 0.00 0.00 46.52 3.02
2934 3940 2.096565 GCGGAAAACGTCTTACCTCAAC 60.097 50.000 0.00 0.00 46.52 3.18
2935 3941 2.154389 CGGAAAACGTCTTACCTCAACG 59.846 50.000 0.00 0.00 41.93 4.10
2936 3942 3.383761 GGAAAACGTCTTACCTCAACGA 58.616 45.455 0.71 0.00 39.59 3.85
2937 3943 3.427863 GGAAAACGTCTTACCTCAACGAG 59.572 47.826 0.71 0.00 39.59 4.18
2938 3944 3.996150 AAACGTCTTACCTCAACGAGA 57.004 42.857 0.71 0.00 39.59 4.04
2939 3945 3.555917 AACGTCTTACCTCAACGAGAG 57.444 47.619 0.71 0.00 44.31 3.20
2946 3952 2.182030 CTCAACGAGAGGGGACGC 59.818 66.667 0.00 0.00 40.84 5.19
2947 3953 3.358076 CTCAACGAGAGGGGACGCC 62.358 68.421 0.00 0.00 40.84 5.68
2948 3954 4.796231 CAACGAGAGGGGACGCCG 62.796 72.222 2.39 0.00 0.00 6.46
2950 3956 3.925630 AACGAGAGGGGACGCCGTA 62.926 63.158 2.39 0.00 36.43 4.02
2951 3957 3.885521 CGAGAGGGGACGCCGTAC 61.886 72.222 2.39 0.00 0.00 3.67
2952 3958 2.753043 GAGAGGGGACGCCGTACA 60.753 66.667 0.12 0.00 0.00 2.90
2953 3959 2.043248 AGAGGGGACGCCGTACAT 60.043 61.111 0.12 0.00 0.00 2.29
2954 3960 2.106332 GAGGGGACGCCGTACATG 59.894 66.667 0.12 0.00 0.00 3.21
2955 3961 2.682494 AGGGGACGCCGTACATGT 60.682 61.111 0.12 2.69 0.00 3.21
2956 3962 2.234913 GAGGGGACGCCGTACATGTT 62.235 60.000 2.30 0.00 0.00 2.71
2957 3963 0.971959 AGGGGACGCCGTACATGTTA 60.972 55.000 2.30 0.00 0.00 2.41
2958 3964 0.105408 GGGGACGCCGTACATGTTAT 59.895 55.000 2.30 0.00 0.00 1.89
2959 3965 1.340889 GGGGACGCCGTACATGTTATA 59.659 52.381 2.30 0.00 0.00 0.98
2960 3966 2.608752 GGGGACGCCGTACATGTTATAG 60.609 54.545 2.30 0.00 0.00 1.31
2961 3967 2.608752 GGGACGCCGTACATGTTATAGG 60.609 54.545 2.30 3.92 0.00 2.57
2962 3968 2.056577 GACGCCGTACATGTTATAGGC 58.943 52.381 17.89 17.89 41.03 3.93
2963 3969 1.409790 ACGCCGTACATGTTATAGGCA 59.590 47.619 23.58 0.00 44.34 4.75
2964 3970 2.058798 CGCCGTACATGTTATAGGCAG 58.941 52.381 23.58 16.13 44.34 4.85
2965 3971 2.413837 GCCGTACATGTTATAGGCAGG 58.586 52.381 20.99 8.93 43.65 4.85
2966 3972 2.870435 GCCGTACATGTTATAGGCAGGG 60.870 54.545 20.99 11.20 43.65 4.45
2967 3973 2.289444 CCGTACATGTTATAGGCAGGGG 60.289 54.545 2.30 0.00 0.00 4.79
2968 3974 2.367567 CGTACATGTTATAGGCAGGGGT 59.632 50.000 2.30 0.00 0.00 4.95
2969 3975 3.740115 GTACATGTTATAGGCAGGGGTG 58.260 50.000 2.30 0.00 0.00 4.61
2970 3976 1.133792 ACATGTTATAGGCAGGGGTGC 60.134 52.381 0.00 0.00 0.00 5.01
2971 3977 0.108585 ATGTTATAGGCAGGGGTGCG 59.891 55.000 0.00 0.00 35.24 5.34
2972 3978 0.978667 TGTTATAGGCAGGGGTGCGA 60.979 55.000 0.00 0.00 35.24 5.10
2973 3979 0.249911 GTTATAGGCAGGGGTGCGAG 60.250 60.000 0.00 0.00 35.24 5.03
2974 3980 0.397957 TTATAGGCAGGGGTGCGAGA 60.398 55.000 0.00 0.00 35.24 4.04
2975 3981 1.113517 TATAGGCAGGGGTGCGAGAC 61.114 60.000 0.00 0.00 35.24 3.36
2983 3989 2.893398 GGTGCGAGACCCTGGTAG 59.107 66.667 0.00 0.00 39.10 3.18
2984 3990 2.184579 GTGCGAGACCCTGGTAGC 59.815 66.667 0.00 0.00 0.00 3.58
2985 3991 3.449227 TGCGAGACCCTGGTAGCG 61.449 66.667 6.07 6.07 0.00 4.26
2986 3992 3.450115 GCGAGACCCTGGTAGCGT 61.450 66.667 10.66 0.00 0.00 5.07
2987 3993 2.490217 CGAGACCCTGGTAGCGTG 59.510 66.667 0.00 0.00 0.00 5.34
2988 3994 2.341101 CGAGACCCTGGTAGCGTGT 61.341 63.158 0.00 0.00 0.00 4.49
2989 3995 1.028330 CGAGACCCTGGTAGCGTGTA 61.028 60.000 0.00 0.00 0.00 2.90
2990 3996 0.455005 GAGACCCTGGTAGCGTGTAC 59.545 60.000 0.00 0.00 0.00 2.90
2991 3997 0.251474 AGACCCTGGTAGCGTGTACA 60.251 55.000 0.00 0.00 0.00 2.90
2992 3998 0.172803 GACCCTGGTAGCGTGTACAG 59.827 60.000 0.00 0.00 0.00 2.74
2993 3999 0.541296 ACCCTGGTAGCGTGTACAGT 60.541 55.000 0.00 0.00 0.00 3.55
2994 4000 0.606604 CCCTGGTAGCGTGTACAGTT 59.393 55.000 0.00 0.00 0.00 3.16
2995 4001 1.001633 CCCTGGTAGCGTGTACAGTTT 59.998 52.381 0.00 0.00 0.00 2.66
2996 4002 2.066262 CCTGGTAGCGTGTACAGTTTG 58.934 52.381 0.00 0.00 0.00 2.93
2997 4003 2.066262 CTGGTAGCGTGTACAGTTTGG 58.934 52.381 0.00 0.00 0.00 3.28
2998 4004 1.687660 TGGTAGCGTGTACAGTTTGGA 59.312 47.619 0.00 0.00 0.00 3.53
2999 4005 2.300723 TGGTAGCGTGTACAGTTTGGAT 59.699 45.455 0.00 0.00 0.00 3.41
3000 4006 2.928116 GGTAGCGTGTACAGTTTGGATC 59.072 50.000 0.00 0.00 0.00 3.36
3001 4007 3.368116 GGTAGCGTGTACAGTTTGGATCT 60.368 47.826 0.00 0.00 0.00 2.75
3002 4008 2.960819 AGCGTGTACAGTTTGGATCTC 58.039 47.619 0.00 0.00 0.00 2.75
3003 4009 1.654105 GCGTGTACAGTTTGGATCTCG 59.346 52.381 0.00 0.00 0.00 4.04
3004 4010 2.925306 GCGTGTACAGTTTGGATCTCGT 60.925 50.000 0.00 0.00 0.00 4.18
3005 4011 3.671433 GCGTGTACAGTTTGGATCTCGTA 60.671 47.826 0.00 0.00 0.00 3.43
3006 4012 3.850273 CGTGTACAGTTTGGATCTCGTAC 59.150 47.826 0.00 0.00 0.00 3.67
3007 4013 4.614306 CGTGTACAGTTTGGATCTCGTACA 60.614 45.833 0.00 0.00 37.47 2.90
3008 4014 4.857588 GTGTACAGTTTGGATCTCGTACAG 59.142 45.833 0.00 0.00 39.69 2.74
3009 4015 3.594603 ACAGTTTGGATCTCGTACAGG 57.405 47.619 0.00 0.00 0.00 4.00
3010 4016 3.162666 ACAGTTTGGATCTCGTACAGGA 58.837 45.455 0.00 0.00 0.00 3.86
3011 4017 3.193691 ACAGTTTGGATCTCGTACAGGAG 59.806 47.826 0.00 0.00 35.32 3.69
3012 4018 3.444034 CAGTTTGGATCTCGTACAGGAGA 59.556 47.826 4.26 4.26 46.37 3.71
3013 4019 3.697045 AGTTTGGATCTCGTACAGGAGAG 59.303 47.826 7.60 0.00 45.59 3.20
3014 4020 3.646736 TTGGATCTCGTACAGGAGAGA 57.353 47.619 7.60 4.11 45.59 3.10
3015 4021 3.201353 TGGATCTCGTACAGGAGAGAG 57.799 52.381 7.60 0.00 45.59 3.20
3016 4022 2.158740 TGGATCTCGTACAGGAGAGAGG 60.159 54.545 7.60 0.00 45.59 3.69
3017 4023 2.158726 GGATCTCGTACAGGAGAGAGGT 60.159 54.545 7.60 0.00 45.59 3.85
3018 4024 3.547746 GATCTCGTACAGGAGAGAGGTT 58.452 50.000 7.60 0.00 45.59 3.50
3019 4025 4.444591 GGATCTCGTACAGGAGAGAGGTTA 60.445 50.000 7.60 0.00 45.59 2.85
3020 4026 3.871485 TCTCGTACAGGAGAGAGGTTAC 58.129 50.000 0.00 0.00 38.12 2.50
3021 4027 3.262660 TCTCGTACAGGAGAGAGGTTACA 59.737 47.826 0.00 0.00 38.12 2.41
3022 4028 4.008330 CTCGTACAGGAGAGAGGTTACAA 58.992 47.826 0.00 0.00 36.65 2.41
3023 4029 3.755378 TCGTACAGGAGAGAGGTTACAAC 59.245 47.826 0.00 0.00 0.00 3.32
3024 4030 3.757493 CGTACAGGAGAGAGGTTACAACT 59.243 47.826 0.00 0.00 0.00 3.16
3025 4031 4.217983 CGTACAGGAGAGAGGTTACAACTT 59.782 45.833 0.00 0.00 0.00 2.66
3026 4032 4.608948 ACAGGAGAGAGGTTACAACTTG 57.391 45.455 0.00 0.00 0.00 3.16
3027 4033 3.325135 ACAGGAGAGAGGTTACAACTTGG 59.675 47.826 0.00 0.00 0.00 3.61
3028 4034 3.578716 CAGGAGAGAGGTTACAACTTGGA 59.421 47.826 0.00 0.00 0.00 3.53
3029 4035 3.835395 AGGAGAGAGGTTACAACTTGGAG 59.165 47.826 0.00 0.00 0.00 3.86
3030 4036 3.833070 GGAGAGAGGTTACAACTTGGAGA 59.167 47.826 0.00 0.00 0.00 3.71
3031 4037 4.468153 GGAGAGAGGTTACAACTTGGAGAT 59.532 45.833 0.00 0.00 0.00 2.75
3032 4038 5.394773 GGAGAGAGGTTACAACTTGGAGATC 60.395 48.000 0.00 0.00 0.00 2.75
3033 4039 5.087323 AGAGAGGTTACAACTTGGAGATCA 58.913 41.667 0.00 0.00 0.00 2.92
3034 4040 5.544176 AGAGAGGTTACAACTTGGAGATCAA 59.456 40.000 0.00 0.00 0.00 2.57
3045 4051 5.125100 CTTGGAGATCAAGCTAGCTAGAG 57.875 47.826 25.15 11.42 45.24 2.43
3046 4052 4.445557 TGGAGATCAAGCTAGCTAGAGA 57.554 45.455 25.15 16.50 0.00 3.10
3047 4053 4.996793 TGGAGATCAAGCTAGCTAGAGAT 58.003 43.478 25.15 20.34 0.00 2.75
3048 4054 6.133253 TGGAGATCAAGCTAGCTAGAGATA 57.867 41.667 25.15 6.83 0.00 1.98
3049 4055 6.179756 TGGAGATCAAGCTAGCTAGAGATAG 58.820 44.000 25.15 8.60 37.12 2.08
3050 4056 6.012945 TGGAGATCAAGCTAGCTAGAGATAGA 60.013 42.308 25.15 13.38 36.19 1.98
3051 4057 6.884295 GGAGATCAAGCTAGCTAGAGATAGAA 59.116 42.308 25.15 2.78 36.19 2.10
3052 4058 7.557719 GGAGATCAAGCTAGCTAGAGATAGAAT 59.442 40.741 25.15 7.40 36.19 2.40
3053 4059 8.884124 AGATCAAGCTAGCTAGAGATAGAATT 57.116 34.615 25.15 0.61 36.19 2.17
3054 4060 9.973661 AGATCAAGCTAGCTAGAGATAGAATTA 57.026 33.333 25.15 0.00 36.19 1.40
3057 4063 9.527157 TCAAGCTAGCTAGAGATAGAATTATGT 57.473 33.333 25.15 0.00 36.19 2.29
3086 4092 7.902087 AGAGATAAACCTCATATCCTAACTGC 58.098 38.462 0.00 0.00 35.68 4.40
3087 4093 7.010339 AGATAAACCTCATATCCTAACTGCC 57.990 40.000 0.00 0.00 31.45 4.85
3088 4094 6.558775 AGATAAACCTCATATCCTAACTGCCA 59.441 38.462 0.00 0.00 31.45 4.92
3089 4095 5.450818 AAACCTCATATCCTAACTGCCAA 57.549 39.130 0.00 0.00 0.00 4.52
3090 4096 4.696479 ACCTCATATCCTAACTGCCAAG 57.304 45.455 0.00 0.00 0.00 3.61
3091 4097 4.298626 ACCTCATATCCTAACTGCCAAGA 58.701 43.478 0.00 0.00 0.00 3.02
3092 4098 4.910304 ACCTCATATCCTAACTGCCAAGAT 59.090 41.667 0.00 0.00 0.00 2.40
3093 4099 6.084738 ACCTCATATCCTAACTGCCAAGATA 58.915 40.000 0.00 0.00 0.00 1.98
3094 4100 6.014156 ACCTCATATCCTAACTGCCAAGATAC 60.014 42.308 0.00 0.00 0.00 2.24
3095 4101 6.025749 TCATATCCTAACTGCCAAGATACG 57.974 41.667 0.00 0.00 0.00 3.06
3096 4102 5.538813 TCATATCCTAACTGCCAAGATACGT 59.461 40.000 0.00 0.00 0.00 3.57
3097 4103 6.717997 TCATATCCTAACTGCCAAGATACGTA 59.282 38.462 0.00 0.00 0.00 3.57
3098 4104 4.644103 TCCTAACTGCCAAGATACGTAC 57.356 45.455 0.00 0.00 0.00 3.67
3099 4105 4.018490 TCCTAACTGCCAAGATACGTACA 58.982 43.478 0.00 0.00 0.00 2.90
3100 4106 4.463539 TCCTAACTGCCAAGATACGTACAA 59.536 41.667 0.00 0.00 0.00 2.41
3101 4107 4.565564 CCTAACTGCCAAGATACGTACAAC 59.434 45.833 0.00 0.00 0.00 3.32
3102 4108 3.955650 ACTGCCAAGATACGTACAACT 57.044 42.857 0.00 0.00 0.00 3.16
3103 4109 3.846360 ACTGCCAAGATACGTACAACTC 58.154 45.455 0.00 0.00 0.00 3.01
3104 4110 3.187700 CTGCCAAGATACGTACAACTCC 58.812 50.000 0.00 0.00 0.00 3.85
3105 4111 2.563620 TGCCAAGATACGTACAACTCCA 59.436 45.455 0.00 0.00 0.00 3.86
3106 4112 3.187700 GCCAAGATACGTACAACTCCAG 58.812 50.000 0.00 0.00 0.00 3.86
3107 4113 3.368116 GCCAAGATACGTACAACTCCAGT 60.368 47.826 0.00 0.00 0.00 4.00
3108 4114 4.817517 CCAAGATACGTACAACTCCAGTT 58.182 43.478 0.00 0.00 39.12 3.16
3109 4115 5.622914 GCCAAGATACGTACAACTCCAGTTA 60.623 44.000 0.00 0.00 36.32 2.24
3110 4116 6.392354 CCAAGATACGTACAACTCCAGTTAA 58.608 40.000 0.00 0.00 36.32 2.01
3111 4117 6.530534 CCAAGATACGTACAACTCCAGTTAAG 59.469 42.308 0.00 0.00 36.32 1.85
3112 4118 7.310664 CAAGATACGTACAACTCCAGTTAAGA 58.689 38.462 0.00 0.00 36.32 2.10
3113 4119 7.642082 AGATACGTACAACTCCAGTTAAGAT 57.358 36.000 0.00 0.00 36.32 2.40
3114 4120 8.743085 AGATACGTACAACTCCAGTTAAGATA 57.257 34.615 0.00 0.00 36.32 1.98
3115 4121 8.619546 AGATACGTACAACTCCAGTTAAGATAC 58.380 37.037 0.00 0.00 36.32 2.24
3116 4122 5.634896 ACGTACAACTCCAGTTAAGATACG 58.365 41.667 15.84 15.84 38.82 3.06
3117 4123 5.032863 CGTACAACTCCAGTTAAGATACGG 58.967 45.833 12.47 0.00 36.32 4.02
3118 4124 5.392380 CGTACAACTCCAGTTAAGATACGGT 60.392 44.000 12.47 0.00 36.32 4.83
3119 4125 6.183360 CGTACAACTCCAGTTAAGATACGGTA 60.183 42.308 12.47 0.00 36.32 4.02
3120 4126 5.958955 ACAACTCCAGTTAAGATACGGTAC 58.041 41.667 0.00 0.00 36.32 3.34
3121 4127 5.477984 ACAACTCCAGTTAAGATACGGTACA 59.522 40.000 0.00 0.00 36.32 2.90
3122 4128 6.154021 ACAACTCCAGTTAAGATACGGTACAT 59.846 38.462 0.00 0.00 36.32 2.29
3123 4129 7.340232 ACAACTCCAGTTAAGATACGGTACATA 59.660 37.037 0.00 0.00 36.32 2.29
3124 4130 8.358148 CAACTCCAGTTAAGATACGGTACATAT 58.642 37.037 0.00 0.00 36.32 1.78
3125 4131 7.883217 ACTCCAGTTAAGATACGGTACATATG 58.117 38.462 0.00 0.00 0.00 1.78
3126 4132 6.684686 TCCAGTTAAGATACGGTACATATGC 58.315 40.000 1.58 0.00 0.00 3.14
3127 4133 5.571741 CCAGTTAAGATACGGTACATATGCG 59.428 44.000 1.58 0.89 0.00 4.73
3128 4134 5.060569 CAGTTAAGATACGGTACATATGCGC 59.939 44.000 0.00 0.00 0.00 6.09
3129 4135 3.653539 AAGATACGGTACATATGCGCA 57.346 42.857 14.96 14.96 0.00 6.09
3130 4136 2.942710 AGATACGGTACATATGCGCAC 58.057 47.619 14.90 0.00 0.00 5.34
3131 4137 2.295070 AGATACGGTACATATGCGCACA 59.705 45.455 14.90 0.00 0.00 4.57
3132 4138 2.580966 TACGGTACATATGCGCACAA 57.419 45.000 14.90 3.92 0.00 3.33
3133 4139 1.286501 ACGGTACATATGCGCACAAG 58.713 50.000 14.90 0.00 0.00 3.16
3134 4140 1.286501 CGGTACATATGCGCACAAGT 58.713 50.000 14.90 7.13 0.00 3.16
3135 4141 2.159212 ACGGTACATATGCGCACAAGTA 60.159 45.455 14.90 5.76 0.00 2.24
3136 4142 2.861335 CGGTACATATGCGCACAAGTAA 59.139 45.455 14.90 0.00 0.00 2.24
3137 4143 3.060540 CGGTACATATGCGCACAAGTAAG 60.061 47.826 14.90 2.58 0.00 2.34
3138 4144 3.247648 GGTACATATGCGCACAAGTAAGG 59.752 47.826 14.90 0.56 0.00 2.69
3139 4145 2.985896 ACATATGCGCACAAGTAAGGT 58.014 42.857 14.90 1.24 0.00 3.50
3140 4146 3.343617 ACATATGCGCACAAGTAAGGTT 58.656 40.909 14.90 0.00 0.00 3.50
3141 4147 3.126858 ACATATGCGCACAAGTAAGGTTG 59.873 43.478 14.90 0.00 0.00 3.77
3142 4148 1.890876 ATGCGCACAAGTAAGGTTGA 58.109 45.000 14.90 0.00 0.00 3.18
3143 4149 0.941542 TGCGCACAAGTAAGGTTGAC 59.058 50.000 5.66 0.00 0.00 3.18
3144 4150 0.941542 GCGCACAAGTAAGGTTGACA 59.058 50.000 0.30 0.00 0.00 3.58
3145 4151 1.333791 GCGCACAAGTAAGGTTGACAC 60.334 52.381 0.30 0.00 0.00 3.67
3146 4152 1.937223 CGCACAAGTAAGGTTGACACA 59.063 47.619 0.00 0.00 0.00 3.72
3147 4153 2.548057 CGCACAAGTAAGGTTGACACAT 59.452 45.455 0.00 0.00 0.00 3.21
3148 4154 3.743911 CGCACAAGTAAGGTTGACACATA 59.256 43.478 0.00 0.00 0.00 2.29
3149 4155 4.377022 CGCACAAGTAAGGTTGACACATAC 60.377 45.833 0.00 0.00 0.00 2.39
3150 4156 4.377022 GCACAAGTAAGGTTGACACATACG 60.377 45.833 0.00 0.00 0.00 3.06
3151 4157 4.151689 CACAAGTAAGGTTGACACATACGG 59.848 45.833 0.00 0.00 0.00 4.02
3152 4158 2.968675 AGTAAGGTTGACACATACGGC 58.031 47.619 0.00 0.00 0.00 5.68
3153 4159 2.004733 GTAAGGTTGACACATACGGCC 58.995 52.381 0.00 0.00 0.00 6.13
3154 4160 0.690762 AAGGTTGACACATACGGCCT 59.309 50.000 0.00 0.00 0.00 5.19
3155 4161 1.563924 AGGTTGACACATACGGCCTA 58.436 50.000 0.00 0.00 0.00 3.93
3156 4162 2.116238 AGGTTGACACATACGGCCTAT 58.884 47.619 0.00 0.00 0.00 2.57
3157 4163 2.504175 AGGTTGACACATACGGCCTATT 59.496 45.455 0.00 0.00 0.00 1.73
3158 4164 3.054655 AGGTTGACACATACGGCCTATTT 60.055 43.478 0.00 0.00 0.00 1.40
3159 4165 4.162698 AGGTTGACACATACGGCCTATTTA 59.837 41.667 0.00 0.00 0.00 1.40
3160 4166 4.877251 GGTTGACACATACGGCCTATTTAA 59.123 41.667 0.00 0.00 0.00 1.52
3161 4167 5.220719 GGTTGACACATACGGCCTATTTAAC 60.221 44.000 0.00 0.00 0.00 2.01
3162 4168 5.087391 TGACACATACGGCCTATTTAACA 57.913 39.130 0.00 0.00 0.00 2.41
3163 4169 5.489249 TGACACATACGGCCTATTTAACAA 58.511 37.500 0.00 0.00 0.00 2.83
3164 4170 5.938710 TGACACATACGGCCTATTTAACAAA 59.061 36.000 0.00 0.00 0.00 2.83
3165 4171 6.128227 TGACACATACGGCCTATTTAACAAAC 60.128 38.462 0.00 0.00 0.00 2.93
3166 4172 5.706369 ACACATACGGCCTATTTAACAAACA 59.294 36.000 0.00 0.00 0.00 2.83
3366 4383 8.497554 ACACAATTTATTTTTGATGATGTGCAC 58.502 29.630 10.75 10.75 39.27 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.825090 TTTGAGCATTCCAGCACGAT 58.175 45.000 0.00 0.00 36.85 3.73
46 47 3.307242 GCAGACATCCGAGTGTTAACATC 59.693 47.826 12.26 9.33 31.16 3.06
59 60 0.531532 CCGATCAGTGGCAGACATCC 60.532 60.000 0.00 0.00 0.00 3.51
145 148 7.202011 CCTGGTAATAGTAAGGTATTGCAGACT 60.202 40.741 0.00 0.00 29.27 3.24
195 198 1.286501 GCAGAAACTGACACACACGA 58.713 50.000 2.81 0.00 32.44 4.35
226 229 0.823769 ACAGCTGACCAGTGAGACGA 60.824 55.000 23.35 0.00 0.00 4.20
277 280 3.330701 TGAAGAAGCAAACCATAGGAGGT 59.669 43.478 0.00 0.00 45.91 3.85
322 325 0.610174 TCTGCATCAGAGAAAGCCGT 59.390 50.000 0.00 0.00 35.39 5.68
382 385 1.134098 AGGACCCAGAAATACCGCATG 60.134 52.381 0.00 0.00 0.00 4.06
450 453 0.605083 TGTGCTCAGCCTCAGTACTG 59.395 55.000 17.17 17.17 35.15 2.74
466 469 1.415374 GCATGAGCAACAGCTTTGTG 58.585 50.000 0.00 0.00 39.10 3.33
481 484 5.100943 CCATATGATCTCAGTAGTCGCATG 58.899 45.833 3.65 0.00 0.00 4.06
490 493 7.623999 AAGATTGTACCCATATGATCTCAGT 57.376 36.000 3.65 0.00 0.00 3.41
526 529 1.804372 GCGAGCTTGAGGGACACATAG 60.804 57.143 4.70 0.00 0.00 2.23
528 531 1.078848 GCGAGCTTGAGGGACACAT 60.079 57.895 4.70 0.00 0.00 3.21
529 532 2.343758 GCGAGCTTGAGGGACACA 59.656 61.111 4.70 0.00 0.00 3.72
551 554 4.919774 ATGTTGTTACACCATAGGACCA 57.080 40.909 0.00 0.00 37.03 4.02
565 568 7.394359 AGAAAGATATGTAGCACCAATGTTGTT 59.606 33.333 0.00 0.00 0.00 2.83
843 856 4.824289 AGGGGTACAATACAACGTTACAG 58.176 43.478 0.00 0.00 0.00 2.74
873 888 7.125811 GGGGTGTGGCTATCTCATTATATAGAA 59.874 40.741 0.00 0.00 0.00 2.10
936 953 1.827969 CACTGGAGGAGACCCTGTAAG 59.172 57.143 0.00 0.00 44.53 2.34
1054 1071 2.626255 TATCGAGCAGAGGAGGCGGT 62.626 60.000 0.00 0.00 36.08 5.68
1195 1224 5.784750 TGAATTAAGACGATGCACTGAAG 57.215 39.130 0.00 0.00 0.00 3.02
1196 1225 6.595326 AGAATGAATTAAGACGATGCACTGAA 59.405 34.615 0.00 0.00 0.00 3.02
1197 1226 6.108687 AGAATGAATTAAGACGATGCACTGA 58.891 36.000 0.00 0.00 0.00 3.41
1198 1227 6.355397 AGAATGAATTAAGACGATGCACTG 57.645 37.500 0.00 0.00 0.00 3.66
1199 1228 6.992063 AAGAATGAATTAAGACGATGCACT 57.008 33.333 0.00 0.00 0.00 4.40
1200 1229 7.750458 TCAAAAGAATGAATTAAGACGATGCAC 59.250 33.333 0.00 0.00 0.00 4.57
1201 1230 7.815641 TCAAAAGAATGAATTAAGACGATGCA 58.184 30.769 0.00 0.00 0.00 3.96
1285 1316 6.743490 GCTCAATATCTTCATCAGATGACCCA 60.743 42.308 13.01 0.31 42.76 4.51
1463 1504 8.684386 TTTCAGAACAGAAAATGTGGTACATA 57.316 30.769 0.00 0.00 43.00 2.29
1497 1538 7.761409 TGTAATGCAAGTATTTCAGGAATCAC 58.239 34.615 0.00 0.00 0.00 3.06
1716 1765 5.010282 TCGAGATAGCTTATACCAGCATCA 58.990 41.667 0.00 0.00 42.84 3.07
1751 1800 1.675714 CCTTGGTATCACGCAGCTTCA 60.676 52.381 0.00 0.00 0.00 3.02
1867 1916 2.292292 CCAAAGTGGTTTTACCCTCGTG 59.708 50.000 0.00 0.00 37.50 4.35
2018 2067 2.455674 TGGTTCTGAATGTGACTCCG 57.544 50.000 0.00 0.00 0.00 4.63
2027 2076 6.207417 CAGTACCTGTTTGAATGGTTCTGAAT 59.793 38.462 10.97 0.00 45.74 2.57
2050 2099 0.672342 AAAGAGCAGGCAAGCAACAG 59.328 50.000 4.78 0.00 36.85 3.16
2310 2362 0.677731 ATCCCACTCATGCCACAACG 60.678 55.000 0.00 0.00 0.00 4.10
2433 2489 2.369633 ATGGATCTCGCTGCCACCA 61.370 57.895 0.00 0.00 33.93 4.17
2488 2544 2.195683 CACCCTGTTGCCACACCT 59.804 61.111 0.00 0.00 0.00 4.00
2500 2556 0.622665 CTCATCTTCTTGCCCACCCT 59.377 55.000 0.00 0.00 0.00 4.34
2600 3527 1.059098 TCTGGAACATGACCTGCAGT 58.941 50.000 13.81 0.11 38.20 4.40
2702 3630 8.962884 AAAAAGGAATTGTGAACAAATTAGCT 57.037 26.923 0.00 0.00 39.55 3.32
2739 3667 4.082571 CCAGCACAATTTTCCTCCTACAAG 60.083 45.833 0.00 0.00 0.00 3.16
2802 3772 1.754226 GCCAAACCTGGAGTTTCACAA 59.246 47.619 0.00 0.00 45.85 3.33
2827 3797 7.054124 GGGTTATGAAACTCATCATCCAAGTA 58.946 38.462 0.00 0.00 40.44 2.24
2828 3798 5.888161 GGGTTATGAAACTCATCATCCAAGT 59.112 40.000 0.00 0.00 40.44 3.16
2829 3799 5.887598 TGGGTTATGAAACTCATCATCCAAG 59.112 40.000 1.16 0.00 41.26 3.61
2830 3800 5.825532 TGGGTTATGAAACTCATCATCCAA 58.174 37.500 1.16 0.00 41.26 3.53
2831 3801 5.449297 TGGGTTATGAAACTCATCATCCA 57.551 39.130 0.00 0.00 41.26 3.41
2904 3910 1.062880 GACGTTTTCCGCTTCACACAA 59.937 47.619 0.00 0.00 41.42 3.33
2905 3911 0.653636 GACGTTTTCCGCTTCACACA 59.346 50.000 0.00 0.00 41.42 3.72
2906 3912 0.935196 AGACGTTTTCCGCTTCACAC 59.065 50.000 0.00 0.00 41.42 3.82
2907 3913 1.658994 AAGACGTTTTCCGCTTCACA 58.341 45.000 0.00 0.00 41.42 3.58
2908 3914 2.096565 GGTAAGACGTTTTCCGCTTCAC 60.097 50.000 0.00 0.00 41.42 3.18
2909 3915 2.137523 GGTAAGACGTTTTCCGCTTCA 58.862 47.619 0.00 0.00 41.42 3.02
2910 3916 2.410939 AGGTAAGACGTTTTCCGCTTC 58.589 47.619 0.00 0.00 41.42 3.86
2911 3917 2.224113 TGAGGTAAGACGTTTTCCGCTT 60.224 45.455 0.00 0.00 41.42 4.68
2912 3918 1.342174 TGAGGTAAGACGTTTTCCGCT 59.658 47.619 0.00 0.00 41.42 5.52
2913 3919 1.787012 TGAGGTAAGACGTTTTCCGC 58.213 50.000 0.00 0.00 41.42 5.54
2914 3920 2.154389 CGTTGAGGTAAGACGTTTTCCG 59.846 50.000 0.00 0.00 44.03 4.30
2915 3921 3.383761 TCGTTGAGGTAAGACGTTTTCC 58.616 45.455 0.00 0.00 37.95 3.13
2916 3922 4.293415 TCTCGTTGAGGTAAGACGTTTTC 58.707 43.478 0.00 0.00 37.95 2.29
2917 3923 4.296690 CTCTCGTTGAGGTAAGACGTTTT 58.703 43.478 0.00 0.00 39.08 2.43
2918 3924 3.898529 CTCTCGTTGAGGTAAGACGTTT 58.101 45.455 0.00 0.00 39.08 3.60
2919 3925 3.555917 CTCTCGTTGAGGTAAGACGTT 57.444 47.619 0.00 0.00 39.08 3.99
2929 3935 2.182030 GCGTCCCCTCTCGTTGAG 59.818 66.667 2.13 2.13 42.30 3.02
2930 3936 3.379445 GGCGTCCCCTCTCGTTGA 61.379 66.667 0.00 0.00 0.00 3.18
2931 3937 4.796231 CGGCGTCCCCTCTCGTTG 62.796 72.222 0.00 0.00 0.00 4.10
2932 3938 3.925630 TACGGCGTCCCCTCTCGTT 62.926 63.158 19.21 0.00 35.60 3.85
2933 3939 4.415150 TACGGCGTCCCCTCTCGT 62.415 66.667 19.21 0.00 37.78 4.18
2934 3940 3.885521 GTACGGCGTCCCCTCTCG 61.886 72.222 19.21 0.00 0.00 4.04
2935 3941 2.125961 ATGTACGGCGTCCCCTCTC 61.126 63.158 19.21 0.19 0.00 3.20
2936 3942 2.043248 ATGTACGGCGTCCCCTCT 60.043 61.111 19.21 0.00 0.00 3.69
2937 3943 2.106332 CATGTACGGCGTCCCCTC 59.894 66.667 19.21 3.96 0.00 4.30
2938 3944 0.971959 TAACATGTACGGCGTCCCCT 60.972 55.000 19.21 0.00 0.00 4.79
2939 3945 0.105408 ATAACATGTACGGCGTCCCC 59.895 55.000 19.21 6.57 0.00 4.81
2940 3946 2.608752 CCTATAACATGTACGGCGTCCC 60.609 54.545 19.21 9.52 0.00 4.46
2941 3947 2.669364 CCTATAACATGTACGGCGTCC 58.331 52.381 19.21 5.43 0.00 4.79
2942 3948 2.056577 GCCTATAACATGTACGGCGTC 58.943 52.381 19.21 9.31 0.00 5.19
2943 3949 1.409790 TGCCTATAACATGTACGGCGT 59.590 47.619 19.64 19.64 40.31 5.68
2944 3950 2.058798 CTGCCTATAACATGTACGGCG 58.941 52.381 4.80 4.80 40.31 6.46
2945 3951 2.413837 CCTGCCTATAACATGTACGGC 58.586 52.381 16.31 16.31 38.01 5.68
2946 3952 2.289444 CCCCTGCCTATAACATGTACGG 60.289 54.545 0.00 0.00 0.00 4.02
2947 3953 2.367567 ACCCCTGCCTATAACATGTACG 59.632 50.000 0.00 0.00 0.00 3.67
2948 3954 3.740115 CACCCCTGCCTATAACATGTAC 58.260 50.000 0.00 0.00 0.00 2.90
2949 3955 2.105821 GCACCCCTGCCTATAACATGTA 59.894 50.000 0.00 0.00 37.45 2.29
2950 3956 1.133792 GCACCCCTGCCTATAACATGT 60.134 52.381 0.00 0.00 37.45 3.21
2951 3957 1.609208 GCACCCCTGCCTATAACATG 58.391 55.000 0.00 0.00 37.45 3.21
2952 3958 0.108585 CGCACCCCTGCCTATAACAT 59.891 55.000 0.00 0.00 40.73 2.71
2953 3959 0.978667 TCGCACCCCTGCCTATAACA 60.979 55.000 0.00 0.00 40.73 2.41
2954 3960 0.249911 CTCGCACCCCTGCCTATAAC 60.250 60.000 0.00 0.00 40.73 1.89
2955 3961 0.397957 TCTCGCACCCCTGCCTATAA 60.398 55.000 0.00 0.00 40.73 0.98
2956 3962 1.113517 GTCTCGCACCCCTGCCTATA 61.114 60.000 0.00 0.00 40.73 1.31
2957 3963 2.041922 TCTCGCACCCCTGCCTAT 60.042 61.111 0.00 0.00 40.73 2.57
2958 3964 3.075005 GTCTCGCACCCCTGCCTA 61.075 66.667 0.00 0.00 40.73 3.93
2966 3972 2.893398 CTACCAGGGTCTCGCACC 59.107 66.667 0.00 0.00 45.97 5.01
2967 3973 2.184579 GCTACCAGGGTCTCGCAC 59.815 66.667 0.00 0.00 0.00 5.34
2968 3974 3.449227 CGCTACCAGGGTCTCGCA 61.449 66.667 0.00 0.00 0.00 5.10
2969 3975 3.450115 ACGCTACCAGGGTCTCGC 61.450 66.667 10.79 5.15 36.62 5.03
2970 3976 1.028330 TACACGCTACCAGGGTCTCG 61.028 60.000 0.00 2.48 39.54 4.04
2971 3977 0.455005 GTACACGCTACCAGGGTCTC 59.545 60.000 0.00 0.00 39.54 3.36
2972 3978 0.251474 TGTACACGCTACCAGGGTCT 60.251 55.000 0.00 0.00 39.54 3.85
2973 3979 0.172803 CTGTACACGCTACCAGGGTC 59.827 60.000 0.00 0.00 39.54 4.46
2974 3980 0.541296 ACTGTACACGCTACCAGGGT 60.541 55.000 0.00 0.00 42.51 4.34
2975 3981 0.606604 AACTGTACACGCTACCAGGG 59.393 55.000 0.00 0.00 0.00 4.45
2976 3982 2.066262 CAAACTGTACACGCTACCAGG 58.934 52.381 0.00 0.00 0.00 4.45
2977 3983 2.066262 CCAAACTGTACACGCTACCAG 58.934 52.381 0.00 0.00 0.00 4.00
2978 3984 1.687660 TCCAAACTGTACACGCTACCA 59.312 47.619 0.00 0.00 0.00 3.25
2979 3985 2.443887 TCCAAACTGTACACGCTACC 57.556 50.000 0.00 0.00 0.00 3.18
2980 3986 3.846360 AGATCCAAACTGTACACGCTAC 58.154 45.455 0.00 0.00 0.00 3.58
2981 3987 3.427098 CGAGATCCAAACTGTACACGCTA 60.427 47.826 0.00 0.00 0.00 4.26
2982 3988 2.671351 CGAGATCCAAACTGTACACGCT 60.671 50.000 0.00 0.00 0.00 5.07
2983 3989 1.654105 CGAGATCCAAACTGTACACGC 59.346 52.381 0.00 0.00 0.00 5.34
2984 3990 2.942710 ACGAGATCCAAACTGTACACG 58.057 47.619 0.00 0.00 0.00 4.49
2985 3991 4.801891 TGTACGAGATCCAAACTGTACAC 58.198 43.478 0.00 0.00 37.75 2.90
2986 3992 4.082408 CCTGTACGAGATCCAAACTGTACA 60.082 45.833 0.00 0.00 39.65 2.90
2987 3993 4.157289 TCCTGTACGAGATCCAAACTGTAC 59.843 45.833 0.00 0.00 34.32 2.90
2988 3994 4.338012 TCCTGTACGAGATCCAAACTGTA 58.662 43.478 0.00 0.00 0.00 2.74
2989 3995 3.162666 TCCTGTACGAGATCCAAACTGT 58.837 45.455 0.00 0.00 0.00 3.55
2990 3996 3.444034 TCTCCTGTACGAGATCCAAACTG 59.556 47.826 0.00 0.00 33.91 3.16
2991 3997 3.697045 CTCTCCTGTACGAGATCCAAACT 59.303 47.826 1.52 0.00 38.22 2.66
2992 3998 3.695060 TCTCTCCTGTACGAGATCCAAAC 59.305 47.826 1.52 0.00 38.22 2.93
2993 3999 3.948473 CTCTCTCCTGTACGAGATCCAAA 59.052 47.826 1.52 0.00 38.22 3.28
2994 4000 3.546724 CTCTCTCCTGTACGAGATCCAA 58.453 50.000 1.52 0.00 38.22 3.53
2995 4001 2.158740 CCTCTCTCCTGTACGAGATCCA 60.159 54.545 1.52 0.00 38.22 3.41
2996 4002 2.158726 ACCTCTCTCCTGTACGAGATCC 60.159 54.545 1.52 0.00 38.22 3.36
2997 4003 3.202829 ACCTCTCTCCTGTACGAGATC 57.797 52.381 1.52 0.00 38.22 2.75
2998 4004 3.655615 AACCTCTCTCCTGTACGAGAT 57.344 47.619 1.52 0.00 38.22 2.75
2999 4005 3.262660 TGTAACCTCTCTCCTGTACGAGA 59.737 47.826 0.00 1.23 37.35 4.04
3000 4006 3.607741 TGTAACCTCTCTCCTGTACGAG 58.392 50.000 0.00 0.00 0.00 4.18
3001 4007 3.708403 TGTAACCTCTCTCCTGTACGA 57.292 47.619 0.00 0.00 0.00 3.43
3002 4008 3.757493 AGTTGTAACCTCTCTCCTGTACG 59.243 47.826 0.00 0.00 0.00 3.67
3003 4009 5.471257 CAAGTTGTAACCTCTCTCCTGTAC 58.529 45.833 0.00 0.00 0.00 2.90
3004 4010 4.527038 CCAAGTTGTAACCTCTCTCCTGTA 59.473 45.833 1.45 0.00 0.00 2.74
3005 4011 3.325135 CCAAGTTGTAACCTCTCTCCTGT 59.675 47.826 1.45 0.00 0.00 4.00
3006 4012 3.578716 TCCAAGTTGTAACCTCTCTCCTG 59.421 47.826 1.45 0.00 0.00 3.86
3007 4013 3.835395 CTCCAAGTTGTAACCTCTCTCCT 59.165 47.826 1.45 0.00 0.00 3.69
3008 4014 3.833070 TCTCCAAGTTGTAACCTCTCTCC 59.167 47.826 1.45 0.00 0.00 3.71
3009 4015 5.186021 TGATCTCCAAGTTGTAACCTCTCTC 59.814 44.000 1.45 0.00 0.00 3.20
3010 4016 5.087323 TGATCTCCAAGTTGTAACCTCTCT 58.913 41.667 1.45 0.00 0.00 3.10
3011 4017 5.407407 TGATCTCCAAGTTGTAACCTCTC 57.593 43.478 1.45 0.00 0.00 3.20
3012 4018 5.799213 CTTGATCTCCAAGTTGTAACCTCT 58.201 41.667 1.45 0.00 45.52 3.69
3024 4030 4.797743 TCTCTAGCTAGCTTGATCTCCAA 58.202 43.478 25.69 3.74 0.00 3.53
3025 4031 4.445557 TCTCTAGCTAGCTTGATCTCCA 57.554 45.455 25.69 4.46 0.00 3.86
3026 4032 6.414732 TCTATCTCTAGCTAGCTTGATCTCC 58.585 44.000 25.69 0.00 0.00 3.71
3027 4033 7.921786 TTCTATCTCTAGCTAGCTTGATCTC 57.078 40.000 25.69 0.00 0.00 2.75
3028 4034 8.884124 AATTCTATCTCTAGCTAGCTTGATCT 57.116 34.615 25.69 18.42 0.00 2.75
3031 4037 9.527157 ACATAATTCTATCTCTAGCTAGCTTGA 57.473 33.333 24.88 24.55 0.00 3.02
3060 4066 9.026121 GCAGTTAGGATATGAGGTTTATCTCTA 57.974 37.037 0.00 0.00 34.98 2.43
3061 4067 7.038658 GGCAGTTAGGATATGAGGTTTATCTCT 60.039 40.741 0.00 0.00 34.98 3.10
3062 4068 7.100409 GGCAGTTAGGATATGAGGTTTATCTC 58.900 42.308 0.00 0.00 0.00 2.75
3063 4069 6.558775 TGGCAGTTAGGATATGAGGTTTATCT 59.441 38.462 0.00 0.00 0.00 1.98
3064 4070 6.769512 TGGCAGTTAGGATATGAGGTTTATC 58.230 40.000 0.00 0.00 0.00 1.75
3065 4071 6.763715 TGGCAGTTAGGATATGAGGTTTAT 57.236 37.500 0.00 0.00 0.00 1.40
3066 4072 6.385759 TCTTGGCAGTTAGGATATGAGGTTTA 59.614 38.462 0.00 0.00 0.00 2.01
3067 4073 5.191722 TCTTGGCAGTTAGGATATGAGGTTT 59.808 40.000 0.00 0.00 0.00 3.27
3068 4074 4.721776 TCTTGGCAGTTAGGATATGAGGTT 59.278 41.667 0.00 0.00 0.00 3.50
3069 4075 4.298626 TCTTGGCAGTTAGGATATGAGGT 58.701 43.478 0.00 0.00 0.00 3.85
3070 4076 4.963318 TCTTGGCAGTTAGGATATGAGG 57.037 45.455 0.00 0.00 0.00 3.86
3071 4077 6.096036 CGTATCTTGGCAGTTAGGATATGAG 58.904 44.000 0.00 0.00 31.38 2.90
3072 4078 5.538813 ACGTATCTTGGCAGTTAGGATATGA 59.461 40.000 15.49 0.00 33.03 2.15
3073 4079 5.784177 ACGTATCTTGGCAGTTAGGATATG 58.216 41.667 0.00 0.00 34.18 1.78
3074 4080 6.492429 TGTACGTATCTTGGCAGTTAGGATAT 59.508 38.462 0.00 0.00 0.00 1.63
3075 4081 5.829391 TGTACGTATCTTGGCAGTTAGGATA 59.171 40.000 0.00 0.00 0.00 2.59
3076 4082 4.647853 TGTACGTATCTTGGCAGTTAGGAT 59.352 41.667 0.00 0.00 0.00 3.24
3077 4083 4.018490 TGTACGTATCTTGGCAGTTAGGA 58.982 43.478 0.00 0.00 0.00 2.94
3078 4084 4.380841 TGTACGTATCTTGGCAGTTAGG 57.619 45.455 0.00 0.00 0.00 2.69
3079 4085 5.408356 AGTTGTACGTATCTTGGCAGTTAG 58.592 41.667 0.00 0.00 0.00 2.34
3080 4086 5.395682 AGTTGTACGTATCTTGGCAGTTA 57.604 39.130 0.00 0.00 0.00 2.24
3081 4087 4.243270 GAGTTGTACGTATCTTGGCAGTT 58.757 43.478 0.00 0.00 0.00 3.16
3082 4088 3.368116 GGAGTTGTACGTATCTTGGCAGT 60.368 47.826 0.00 0.00 0.00 4.40
3083 4089 3.187700 GGAGTTGTACGTATCTTGGCAG 58.812 50.000 0.00 0.00 0.00 4.85
3084 4090 2.563620 TGGAGTTGTACGTATCTTGGCA 59.436 45.455 0.00 0.00 0.00 4.92
3085 4091 3.187700 CTGGAGTTGTACGTATCTTGGC 58.812 50.000 0.00 0.00 0.00 4.52
3086 4092 4.451629 ACTGGAGTTGTACGTATCTTGG 57.548 45.455 0.00 0.00 0.00 3.61
3087 4093 7.310664 TCTTAACTGGAGTTGTACGTATCTTG 58.689 38.462 0.00 0.00 38.90 3.02
3088 4094 7.458409 TCTTAACTGGAGTTGTACGTATCTT 57.542 36.000 0.00 0.00 38.90 2.40
3089 4095 7.642082 ATCTTAACTGGAGTTGTACGTATCT 57.358 36.000 0.00 0.00 38.90 1.98
3090 4096 7.585573 CGTATCTTAACTGGAGTTGTACGTATC 59.414 40.741 0.00 0.00 38.90 2.24
3091 4097 7.412853 CGTATCTTAACTGGAGTTGTACGTAT 58.587 38.462 0.00 0.00 38.90 3.06
3092 4098 6.183360 CCGTATCTTAACTGGAGTTGTACGTA 60.183 42.308 17.40 0.00 38.90 3.57
3093 4099 5.392380 CCGTATCTTAACTGGAGTTGTACGT 60.392 44.000 17.40 0.00 38.90 3.57
3094 4100 5.032863 CCGTATCTTAACTGGAGTTGTACG 58.967 45.833 2.14 10.40 38.90 3.67
3095 4101 5.958955 ACCGTATCTTAACTGGAGTTGTAC 58.041 41.667 2.14 0.00 38.90 2.90
3096 4102 6.658816 TGTACCGTATCTTAACTGGAGTTGTA 59.341 38.462 2.14 0.00 38.90 2.41
3097 4103 5.477984 TGTACCGTATCTTAACTGGAGTTGT 59.522 40.000 2.14 0.00 38.90 3.32
3098 4104 5.957798 TGTACCGTATCTTAACTGGAGTTG 58.042 41.667 2.14 0.00 38.90 3.16
3099 4105 6.786967 ATGTACCGTATCTTAACTGGAGTT 57.213 37.500 0.00 0.00 41.73 3.01
3100 4106 7.523380 GCATATGTACCGTATCTTAACTGGAGT 60.523 40.741 4.29 0.00 0.00 3.85
3101 4107 6.807230 GCATATGTACCGTATCTTAACTGGAG 59.193 42.308 4.29 0.00 0.00 3.86
3102 4108 6.569035 CGCATATGTACCGTATCTTAACTGGA 60.569 42.308 4.29 0.00 0.00 3.86
3103 4109 5.571741 CGCATATGTACCGTATCTTAACTGG 59.428 44.000 4.29 0.00 0.00 4.00
3104 4110 5.060569 GCGCATATGTACCGTATCTTAACTG 59.939 44.000 0.30 0.00 0.00 3.16
3105 4111 5.159209 GCGCATATGTACCGTATCTTAACT 58.841 41.667 0.30 0.00 0.00 2.24
3106 4112 4.919168 TGCGCATATGTACCGTATCTTAAC 59.081 41.667 5.66 0.00 0.00 2.01
3107 4113 4.919168 GTGCGCATATGTACCGTATCTTAA 59.081 41.667 15.91 0.00 0.00 1.85
3108 4114 4.023021 TGTGCGCATATGTACCGTATCTTA 60.023 41.667 15.91 0.00 0.00 2.10
3109 4115 3.243602 TGTGCGCATATGTACCGTATCTT 60.244 43.478 15.91 0.00 0.00 2.40
3110 4116 2.295070 TGTGCGCATATGTACCGTATCT 59.705 45.455 15.91 0.00 0.00 1.98
3111 4117 2.668250 TGTGCGCATATGTACCGTATC 58.332 47.619 15.91 0.00 0.00 2.24
3112 4118 2.804697 TGTGCGCATATGTACCGTAT 57.195 45.000 15.91 0.00 0.00 3.06
3113 4119 2.159212 ACTTGTGCGCATATGTACCGTA 60.159 45.455 21.37 0.00 0.00 4.02
3114 4120 1.286501 CTTGTGCGCATATGTACCGT 58.713 50.000 15.91 0.00 0.00 4.83
3115 4121 1.286501 ACTTGTGCGCATATGTACCG 58.713 50.000 21.37 0.62 0.00 4.02
3116 4122 3.247648 CCTTACTTGTGCGCATATGTACC 59.752 47.826 25.50 8.46 0.00 3.34
3117 4123 3.869246 ACCTTACTTGTGCGCATATGTAC 59.131 43.478 25.50 9.15 0.00 2.90
3118 4124 4.131649 ACCTTACTTGTGCGCATATGTA 57.868 40.909 23.04 23.04 0.00 2.29
3119 4125 2.985896 ACCTTACTTGTGCGCATATGT 58.014 42.857 24.83 24.83 0.00 2.29
3120 4126 3.373748 TCAACCTTACTTGTGCGCATATG 59.626 43.478 15.91 16.42 0.00 1.78
3121 4127 3.374058 GTCAACCTTACTTGTGCGCATAT 59.626 43.478 15.91 0.00 0.00 1.78
3122 4128 2.739913 GTCAACCTTACTTGTGCGCATA 59.260 45.455 15.91 8.59 0.00 3.14
3123 4129 1.535462 GTCAACCTTACTTGTGCGCAT 59.465 47.619 15.91 0.00 0.00 4.73
3124 4130 0.941542 GTCAACCTTACTTGTGCGCA 59.058 50.000 5.66 5.66 0.00 6.09
3125 4131 0.941542 TGTCAACCTTACTTGTGCGC 59.058 50.000 0.00 0.00 0.00 6.09
3126 4132 1.937223 TGTGTCAACCTTACTTGTGCG 59.063 47.619 0.00 0.00 0.00 5.34
3127 4133 4.377022 CGTATGTGTCAACCTTACTTGTGC 60.377 45.833 0.00 0.00 0.00 4.57
3128 4134 4.151689 CCGTATGTGTCAACCTTACTTGTG 59.848 45.833 0.00 0.00 0.00 3.33
3129 4135 4.312443 CCGTATGTGTCAACCTTACTTGT 58.688 43.478 0.00 0.00 0.00 3.16
3130 4136 3.124636 GCCGTATGTGTCAACCTTACTTG 59.875 47.826 0.00 0.00 0.00 3.16
3131 4137 3.332034 GCCGTATGTGTCAACCTTACTT 58.668 45.455 0.00 0.00 0.00 2.24
3132 4138 2.354403 GGCCGTATGTGTCAACCTTACT 60.354 50.000 0.00 0.00 0.00 2.24
3133 4139 2.004733 GGCCGTATGTGTCAACCTTAC 58.995 52.381 0.00 0.00 0.00 2.34
3134 4140 1.903860 AGGCCGTATGTGTCAACCTTA 59.096 47.619 0.00 0.00 0.00 2.69
3135 4141 0.690762 AGGCCGTATGTGTCAACCTT 59.309 50.000 0.00 0.00 0.00 3.50
3136 4142 1.563924 TAGGCCGTATGTGTCAACCT 58.436 50.000 0.00 0.00 0.00 3.50
3137 4143 2.614829 ATAGGCCGTATGTGTCAACC 57.385 50.000 0.00 0.00 0.00 3.77
3138 4144 5.352016 TGTTAAATAGGCCGTATGTGTCAAC 59.648 40.000 0.00 0.00 0.00 3.18
3139 4145 5.489249 TGTTAAATAGGCCGTATGTGTCAA 58.511 37.500 0.00 0.00 0.00 3.18
3140 4146 5.087391 TGTTAAATAGGCCGTATGTGTCA 57.913 39.130 0.00 0.00 0.00 3.58
3141 4147 6.128227 TGTTTGTTAAATAGGCCGTATGTGTC 60.128 38.462 0.00 0.00 0.00 3.67
3142 4148 5.706369 TGTTTGTTAAATAGGCCGTATGTGT 59.294 36.000 0.00 0.00 0.00 3.72
3143 4149 6.184580 TGTTTGTTAAATAGGCCGTATGTG 57.815 37.500 0.00 0.00 0.00 3.21
3144 4150 7.399245 AATGTTTGTTAAATAGGCCGTATGT 57.601 32.000 0.00 0.00 0.00 2.29
3145 4151 8.617809 AGTAATGTTTGTTAAATAGGCCGTATG 58.382 33.333 0.00 0.00 0.00 2.39
3146 4152 8.741603 AGTAATGTTTGTTAAATAGGCCGTAT 57.258 30.769 0.00 0.00 0.00 3.06
3147 4153 9.097257 GTAGTAATGTTTGTTAAATAGGCCGTA 57.903 33.333 0.00 0.00 0.00 4.02
3148 4154 7.607223 TGTAGTAATGTTTGTTAAATAGGCCGT 59.393 33.333 0.00 0.00 0.00 5.68
3149 4155 7.906527 GTGTAGTAATGTTTGTTAAATAGGCCG 59.093 37.037 0.00 0.00 0.00 6.13
3150 4156 8.732531 TGTGTAGTAATGTTTGTTAAATAGGCC 58.267 33.333 0.00 0.00 0.00 5.19
3159 4165 8.141268 CCCTGAAATTGTGTAGTAATGTTTGTT 58.859 33.333 0.00 0.00 0.00 2.83
3160 4166 7.286775 ACCCTGAAATTGTGTAGTAATGTTTGT 59.713 33.333 0.00 0.00 0.00 2.83
3161 4167 7.657336 ACCCTGAAATTGTGTAGTAATGTTTG 58.343 34.615 0.00 0.00 0.00 2.93
3162 4168 7.833285 ACCCTGAAATTGTGTAGTAATGTTT 57.167 32.000 0.00 0.00 0.00 2.83
3163 4169 8.927675 TTACCCTGAAATTGTGTAGTAATGTT 57.072 30.769 0.00 0.00 0.00 2.71
3164 4170 8.927675 TTTACCCTGAAATTGTGTAGTAATGT 57.072 30.769 0.00 0.00 0.00 2.71
3165 4171 7.968405 GCTTTACCCTGAAATTGTGTAGTAATG 59.032 37.037 0.00 0.00 0.00 1.90
3166 4172 7.122204 GGCTTTACCCTGAAATTGTGTAGTAAT 59.878 37.037 0.00 0.00 0.00 1.89
3366 4383 4.536364 TCTTTTTCTGCTGAAAGTGTCG 57.464 40.909 16.87 7.14 42.34 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.