AutoCloner

Multiple sequence alignment - TraesCS1B01G327400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G327400	chr1B	100.000	4452	0	0	1	4452	553628272	553632723	0.000000e+00	8222.0
1	TraesCS1B01G327400	chr1A	91.094	1325	75	11	1966	3272	507077359	507078658	0.000000e+00	1753.0
2	TraesCS1B01G327400	chr1A	91.726	1124	61	19	3360	4452	507078904	507080026	0.000000e+00	1531.0
3	TraesCS1B01G327400	chr1A	86.154	1170	63	38	854	1965	507076130	507077258	0.000000e+00	1171.0
4	TraesCS1B01G327400	chr1A	77.778	342	56	14	419	758	94109011	94109334	4.540000e-45	193.0
5	TraesCS1B01G327400	chr1D	92.787	1220	55	13	2081	3272	410791466	410792680	0.000000e+00	1735.0
6	TraesCS1B01G327400	chr1D	92.082	1124	58	15	3360	4452	410792928	410794051	0.000000e+00	1554.0
7	TraesCS1B01G327400	chr1D	86.411	1148	62	37	864	1951	410790176	410791289	0.000000e+00	1170.0
8	TraesCS1B01G327400	chr1D	86.606	657	55	15	163	808	410745852	410746486	0.000000e+00	695.0
9	TraesCS1B01G327400	chr2B	92.394	355	22	2	3376	3726	234631290	234631643	6.650000e-138	501.0
10	TraesCS1B01G327400	chr2B	96.610	59	2	0	379	437	134707504	134707446	1.020000e-16	99.0
11	TraesCS1B01G327400	chr2B	75.771	227	32	11	379	585	133688017	133687794	4.740000e-15	93.5
12	TraesCS1B01G327400	chr2B	91.935	62	4	1	376	437	390611513	390611573	7.930000e-13	86.1
13	TraesCS1B01G327400	chr5D	88.690	336	29	5	1104	1439	168714635	168714309	6.940000e-108	401.0
14	TraesCS1B01G327400	chr5D	81.579	266	26	15	1614	1874	168714315	168714068	9.770000e-47	198.0
15	TraesCS1B01G327400	chr7D	85.843	332	38	4	1103	1434	619548641	619548963	1.190000e-90	344.0
16	TraesCS1B01G327400	chr7D	81.313	396	51	13	375	756	66604037	66603651	2.600000e-77	300.0
17	TraesCS1B01G327400	chr7D	78.977	352	60	10	411	759	561717869	561717529	1.250000e-55	228.0
18	TraesCS1B01G327400	chr3A	84.173	278	25	2	1614	1872	223706933	223706656	7.390000e-63	252.0
19	TraesCS1B01G327400	chr3A	78.055	401	62	16	375	761	60607971	60608359	3.460000e-56	230.0
20	TraesCS1B01G327400	chr3A	82.353	204	17	6	2762	2956	708003217	708003410	4.610000e-35	159.0
21	TraesCS1B01G327400	chr2D	80.906	309	35	12	379	671	595407028	595407328	5.800000e-54	222.0
22	TraesCS1B01G327400	chr2D	80.328	305	43	11	377	677	609766677	609766386	9.700000e-52	215.0
23	TraesCS1B01G327400	chr2D	79.444	180	15	8	373	534	322541056	322541231	1.690000e-19	108.0
24	TraesCS1B01G327400	chr3D	82.231	242	33	10	528	763	263813187	263813424	2.720000e-47	200.0
25	TraesCS1B01G327400	chr3D	75.795	409	77	17	372	772	515669890	515670284	2.110000e-43	187.0
26	TraesCS1B01G327400	chr3D	90.278	72	6	1	2883	2954	554962378	554962308	4.740000e-15	93.5
27	TraesCS1B01G327400	chr3D	93.548	62	4	0	376	437	562212829	562212890	4.740000e-15	93.5
28	TraesCS1B01G327400	chr4B	76.733	404	61	22	377	770	406396435	406396055	1.260000e-45	195.0
29	TraesCS1B01G327400	chr3B	81.513	238	36	7	527	761	44416301	44416533	5.880000e-44	189.0
30	TraesCS1B01G327400	chr3B	81.928	166	21	7	599	763	346614336	346614179	1.000000e-26	132.0
31	TraesCS1B01G327400	chr3B	90.141	71	6	1	2884	2954	737762024	737762093	1.710000e-14	91.6
32	TraesCS1B01G327400	chr6A	75.853	381	74	12	391	762	609739546	609739917	1.270000e-40	178.0
33	TraesCS1B01G327400	chr2A	77.049	244	45	10	459	699	83711336	83711571	3.610000e-26	130.0
34	TraesCS1B01G327400	chr7B	85.507	69	9	1	2886	2954	609840495	609840428	2.220000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G327400	chr1B	553628272	553632723	4451	False	8222.000000	8222	100.000000	1	4452	1	chr1B.!!$F1	4451
1	TraesCS1B01G327400	chr1A	507076130	507080026	3896	False	1485.000000	1753	89.658000	854	4452	3	chr1A.!!$F2	3598
2	TraesCS1B01G327400	chr1D	410790176	410794051	3875	False	1486.333333	1735	90.426667	864	4452	3	chr1D.!!$F2	3588
3	TraesCS1B01G327400	chr1D	410745852	410746486	634	False	695.000000	695	86.606000	163	808	1	chr1D.!!$F1	645
4	TraesCS1B01G327400	chr5D	168714068	168714635	567	True	299.500000	401	85.134500	1104	1874	2	chr5D.!!$R1	770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
928	940	0.038618	AAAAAGATCCAAACGGCCGC	60.039	50.0	28.58	6.84	0.00	6.53	F
2058	2283	0.096454	GCGAACGAATGCAAGGGTAC	59.904	55.0	0.00	0.00	0.00	3.34	F
2790	3058	0.678048	GCCTGGCAGTAACCTTGAGG	60.678	60.0	15.17	0.00	42.17	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2477	2734	0.170561	GCACCTTCAGAGCTGCAATG	59.829	55.000	1.02	35.10	2.82	R
3180	3459	0.247736	CCTCTCACCAGTCGGGAAAG	59.752	60.000	0.00	41.15	2.62	R
4397	4869	1.134907	CCCAACATGCTCATTTCCAGC	60.135	52.381	0.00	37.40	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	2.879103	CCCCTCTGGCTAAACTTCAA	57.121	50.000	0.00	0.00	0.00	2.69
20	21	3.154827	CCCCTCTGGCTAAACTTCAAA	57.845	47.619	0.00	0.00	0.00	2.69
21	22	3.084786	CCCCTCTGGCTAAACTTCAAAG	58.915	50.000	0.00	0.00	0.00	2.77
22	23	3.084786	CCCTCTGGCTAAACTTCAAAGG	58.915	50.000	0.00	0.00	0.00	3.11
23	24	3.498661	CCCTCTGGCTAAACTTCAAAGGT	60.499	47.826	0.00	0.00	0.00	3.50
24	25	4.263331	CCCTCTGGCTAAACTTCAAAGGTA	60.263	45.833	0.00	0.00	0.00	3.08
25	26	5.313712	CCTCTGGCTAAACTTCAAAGGTAA	58.686	41.667	0.00	0.00	0.00	2.85
26	27	5.768164	CCTCTGGCTAAACTTCAAAGGTAAA	59.232	40.000	0.00	0.00	0.00	2.01
27	28	6.072452	CCTCTGGCTAAACTTCAAAGGTAAAG	60.072	42.308	0.00	0.00	0.00	1.85
28	29	6.362248	TCTGGCTAAACTTCAAAGGTAAAGT	58.638	36.000	0.00	0.00	37.32	2.66
29	30	7.511268	TCTGGCTAAACTTCAAAGGTAAAGTA	58.489	34.615	0.00	0.00	34.71	2.24
30	31	7.660208	TCTGGCTAAACTTCAAAGGTAAAGTAG	59.340	37.037	0.00	0.00	34.71	2.57
31	32	7.511268	TGGCTAAACTTCAAAGGTAAAGTAGA	58.489	34.615	0.00	0.00	34.71	2.59
32	33	7.660208	TGGCTAAACTTCAAAGGTAAAGTAGAG	59.340	37.037	0.00	0.00	34.71	2.43
33	34	7.119407	GGCTAAACTTCAAAGGTAAAGTAGAGG	59.881	40.741	0.00	0.00	34.71	3.69
34	35	7.119407	GCTAAACTTCAAAGGTAAAGTAGAGGG	59.881	40.741	0.00	0.00	34.71	4.30
35	36	6.758806	AACTTCAAAGGTAAAGTAGAGGGA	57.241	37.500	0.00	0.00	34.71	4.20
36	37	6.361768	ACTTCAAAGGTAAAGTAGAGGGAG	57.638	41.667	0.00	0.00	34.05	4.30
37	38	6.082707	ACTTCAAAGGTAAAGTAGAGGGAGA	58.917	40.000	0.00	0.00	34.05	3.71
38	39	6.557633	ACTTCAAAGGTAAAGTAGAGGGAGAA	59.442	38.462	0.00	0.00	34.05	2.87
39	40	7.072076	ACTTCAAAGGTAAAGTAGAGGGAGAAA	59.928	37.037	0.00	0.00	34.05	2.52
40	41	6.766429	TCAAAGGTAAAGTAGAGGGAGAAAC	58.234	40.000	0.00	0.00	0.00	2.78
41	42	6.328148	TCAAAGGTAAAGTAGAGGGAGAAACA	59.672	38.462	0.00	0.00	0.00	2.83
42	43	6.954352	AAGGTAAAGTAGAGGGAGAAACAT	57.046	37.500	0.00	0.00	0.00	2.71
43	44	6.301169	AGGTAAAGTAGAGGGAGAAACATG	57.699	41.667	0.00	0.00	0.00	3.21
44	45	5.785940	AGGTAAAGTAGAGGGAGAAACATGT	59.214	40.000	0.00	0.00	0.00	3.21
45	46	5.875359	GGTAAAGTAGAGGGAGAAACATGTG	59.125	44.000	0.00	0.00	0.00	3.21
46	47	5.825593	AAAGTAGAGGGAGAAACATGTGA	57.174	39.130	0.00	0.00	0.00	3.58
47	48	5.825593	AAGTAGAGGGAGAAACATGTGAA	57.174	39.130	0.00	0.00	0.00	3.18
48	49	6.380079	AAGTAGAGGGAGAAACATGTGAAT	57.620	37.500	0.00	0.00	0.00	2.57
49	50	7.496346	AAGTAGAGGGAGAAACATGTGAATA	57.504	36.000	0.00	0.00	0.00	1.75
50	51	7.118496	AGTAGAGGGAGAAACATGTGAATAG	57.882	40.000	0.00	0.00	0.00	1.73
51	52	5.365021	AGAGGGAGAAACATGTGAATAGG	57.635	43.478	0.00	0.00	0.00	2.57
52	53	5.032846	AGAGGGAGAAACATGTGAATAGGA	58.967	41.667	0.00	0.00	0.00	2.94
53	54	5.488919	AGAGGGAGAAACATGTGAATAGGAA	59.511	40.000	0.00	0.00	0.00	3.36
54	55	6.012508	AGAGGGAGAAACATGTGAATAGGAAA	60.013	38.462	0.00	0.00	0.00	3.13
55	56	6.735556	AGGGAGAAACATGTGAATAGGAAAT	58.264	36.000	0.00	0.00	0.00	2.17
56	57	7.184862	AGGGAGAAACATGTGAATAGGAAATT	58.815	34.615	0.00	0.00	0.00	1.82
57	58	7.675619	AGGGAGAAACATGTGAATAGGAAATTT	59.324	33.333	0.00	0.00	0.00	1.82
58	59	8.314021	GGGAGAAACATGTGAATAGGAAATTTT	58.686	33.333	0.00	0.00	0.00	1.82
59	60	9.358872	GGAGAAACATGTGAATAGGAAATTTTC	57.641	33.333	0.00	0.24	0.00	2.29
60	61	9.912634	GAGAAACATGTGAATAGGAAATTTTCA	57.087	29.630	11.09	0.00	0.00	2.69
64	65	8.991243	ACATGTGAATAGGAAATTTTCATGTG	57.009	30.769	11.09	2.11	40.71	3.21
65	66	7.546667	ACATGTGAATAGGAAATTTTCATGTGC	59.453	33.333	11.09	1.86	40.71	4.57
66	67	6.990798	TGTGAATAGGAAATTTTCATGTGCA	58.009	32.000	11.09	4.47	32.48	4.57
67	68	7.092079	TGTGAATAGGAAATTTTCATGTGCAG	58.908	34.615	11.09	0.00	32.48	4.41
68	69	7.039853	TGTGAATAGGAAATTTTCATGTGCAGA	60.040	33.333	11.09	3.24	32.48	4.26
69	70	7.274250	GTGAATAGGAAATTTTCATGTGCAGAC	59.726	37.037	11.09	0.00	32.48	3.51
70	71	6.839124	ATAGGAAATTTTCATGTGCAGACA	57.161	33.333	11.09	0.00	36.22	3.41
94	95	6.212955	ACAATTTATGTGTTCCGTTCAAAGG	58.787	36.000	0.00	0.00	41.93	3.11
95	96	6.039941	ACAATTTATGTGTTCCGTTCAAAGGA	59.960	34.615	0.00	0.00	41.93	3.36
96	97	6.642707	ATTTATGTGTTCCGTTCAAAGGAA	57.357	33.333	0.00	0.00	44.72	3.36
108	109	6.012658	CGTTCAAAGGAATGGATCAAAAGA	57.987	37.500	0.00	0.00	36.57	2.52
109	110	6.446318	CGTTCAAAGGAATGGATCAAAAGAA	58.554	36.000	0.00	0.00	36.57	2.52
110	111	6.922957	CGTTCAAAGGAATGGATCAAAAGAAA	59.077	34.615	0.00	0.00	36.57	2.52
111	112	7.115378	CGTTCAAAGGAATGGATCAAAAGAAAG	59.885	37.037	0.00	0.00	36.57	2.62
112	113	7.601705	TCAAAGGAATGGATCAAAAGAAAGT	57.398	32.000	0.00	0.00	0.00	2.66
113	114	7.436118	TCAAAGGAATGGATCAAAAGAAAGTG	58.564	34.615	0.00	0.00	0.00	3.16
114	115	5.990120	AGGAATGGATCAAAAGAAAGTGG	57.010	39.130	0.00	0.00	0.00	4.00
115	116	4.774200	AGGAATGGATCAAAAGAAAGTGGG	59.226	41.667	0.00	0.00	0.00	4.61
116	117	4.772100	GGAATGGATCAAAAGAAAGTGGGA	59.228	41.667	0.00	0.00	0.00	4.37
117	118	5.105595	GGAATGGATCAAAAGAAAGTGGGAG	60.106	44.000	0.00	0.00	0.00	4.30
118	119	3.766545	TGGATCAAAAGAAAGTGGGAGG	58.233	45.455	0.00	0.00	0.00	4.30
119	120	3.397618	TGGATCAAAAGAAAGTGGGAGGA	59.602	43.478	0.00	0.00	0.00	3.71
120	121	3.759086	GGATCAAAAGAAAGTGGGAGGAC	59.241	47.826	0.00	0.00	0.00	3.85
121	122	2.846193	TCAAAAGAAAGTGGGAGGACG	58.154	47.619	0.00	0.00	0.00	4.79
122	123	2.171870	TCAAAAGAAAGTGGGAGGACGT	59.828	45.455	0.00	0.00	0.00	4.34
123	124	2.949644	CAAAAGAAAGTGGGAGGACGTT	59.050	45.455	0.00	0.00	0.00	3.99
124	125	3.292492	AAAGAAAGTGGGAGGACGTTT	57.708	42.857	0.00	0.00	0.00	3.60
125	126	3.292492	AAGAAAGTGGGAGGACGTTTT	57.708	42.857	0.00	0.00	0.00	2.43
126	127	2.847441	AGAAAGTGGGAGGACGTTTTC	58.153	47.619	0.00	0.00	0.00	2.29
127	128	1.878088	GAAAGTGGGAGGACGTTTTCC	59.122	52.381	10.01	10.01	46.33	3.13
139	140	4.576879	GGACGTTTTCCTTTGATCCTAGT	58.423	43.478	0.00	0.00	41.95	2.57
140	141	4.630505	GGACGTTTTCCTTTGATCCTAGTC	59.369	45.833	0.00	0.00	41.95	2.59
141	142	5.480205	GACGTTTTCCTTTGATCCTAGTCT	58.520	41.667	0.00	0.00	0.00	3.24
142	143	5.480205	ACGTTTTCCTTTGATCCTAGTCTC	58.520	41.667	0.00	0.00	0.00	3.36
143	144	4.563184	CGTTTTCCTTTGATCCTAGTCTCG	59.437	45.833	0.00	0.00	0.00	4.04
144	145	5.480205	GTTTTCCTTTGATCCTAGTCTCGT	58.520	41.667	0.00	0.00	0.00	4.18
145	146	6.624423	CGTTTTCCTTTGATCCTAGTCTCGTA	60.624	42.308	0.00	0.00	0.00	3.43
146	147	6.452494	TTTCCTTTGATCCTAGTCTCGTAG	57.548	41.667	0.00	0.00	0.00	3.51
147	148	4.462133	TCCTTTGATCCTAGTCTCGTAGG	58.538	47.826	0.00	0.00	41.09	3.18
148	149	3.570550	CCTTTGATCCTAGTCTCGTAGGG	59.429	52.174	0.00	0.00	40.25	3.53
149	150	4.462133	CTTTGATCCTAGTCTCGTAGGGA	58.538	47.826	0.00	0.00	40.25	4.20
150	151	4.515028	TTGATCCTAGTCTCGTAGGGAA	57.485	45.455	0.00	0.00	40.25	3.97
151	152	4.515028	TGATCCTAGTCTCGTAGGGAAA	57.485	45.455	0.00	0.00	40.25	3.13
152	153	4.863548	TGATCCTAGTCTCGTAGGGAAAA	58.136	43.478	0.00	0.00	40.25	2.29
153	154	4.888239	TGATCCTAGTCTCGTAGGGAAAAG	59.112	45.833	0.00	0.00	40.25	2.27
154	155	3.022406	TCCTAGTCTCGTAGGGAAAAGC	58.978	50.000	0.00	0.00	40.25	3.51
155	156	2.758979	CCTAGTCTCGTAGGGAAAAGCA	59.241	50.000	0.00	0.00	36.63	3.91
156	157	2.745515	AGTCTCGTAGGGAAAAGCAC	57.254	50.000	0.00	0.00	0.00	4.40
157	158	1.968493	AGTCTCGTAGGGAAAAGCACA	59.032	47.619	0.00	0.00	0.00	4.57
158	159	2.367567	AGTCTCGTAGGGAAAAGCACAA	59.632	45.455	0.00	0.00	0.00	3.33
159	160	2.737252	GTCTCGTAGGGAAAAGCACAAG	59.263	50.000	0.00	0.00	0.00	3.16
160	161	2.631062	TCTCGTAGGGAAAAGCACAAGA	59.369	45.455	0.00	0.00	0.00	3.02
161	162	3.070446	TCTCGTAGGGAAAAGCACAAGAA	59.930	43.478	0.00	0.00	0.00	2.52
196	197	5.068987	CACTTGAACCTCCTTTCCAAATTCA	59.931	40.000	0.00	0.00	0.00	2.57
301	302	7.477008	AGTATTATACTACTTCCCCTCCGATT	58.523	38.462	2.64	0.00	37.23	3.34
315	316	4.941263	CCCTCCGATTCAAATTAAGTGTCA	59.059	41.667	0.00	0.00	0.00	3.58
316	317	5.590259	CCCTCCGATTCAAATTAAGTGTCAT	59.410	40.000	0.00	0.00	0.00	3.06
317	318	6.765989	CCCTCCGATTCAAATTAAGTGTCATA	59.234	38.462	0.00	0.00	0.00	2.15
333	334	8.871686	AAGTGTCATAGTTTTGAATTTGAACC	57.128	30.769	0.00	0.00	0.00	3.62
352	353	1.596603	CGGGGTTAGTTCAAAACCGT	58.403	50.000	0.00	0.00	46.14	4.83
355	356	3.151554	GGGGTTAGTTCAAAACCGTGAT	58.848	45.455	0.00	0.00	46.14	3.06
356	357	3.057806	GGGGTTAGTTCAAAACCGTGATG	60.058	47.826	0.00	0.00	46.14	3.07
367	368	3.821421	AACCGTGATGGAGGAAGTATC	57.179	47.619	0.00	0.00	42.00	2.24
368	369	3.033659	ACCGTGATGGAGGAAGTATCT	57.966	47.619	0.00	0.00	42.00	1.98
369	370	2.959707	ACCGTGATGGAGGAAGTATCTC	59.040	50.000	0.00	0.00	42.00	2.75
370	371	2.959030	CCGTGATGGAGGAAGTATCTCA	59.041	50.000	0.00	0.00	42.00	3.27
371	372	3.243569	CCGTGATGGAGGAAGTATCTCAC	60.244	52.174	0.00	0.00	42.00	3.51
372	373	3.381590	CGTGATGGAGGAAGTATCTCACA	59.618	47.826	0.00	0.00	32.98	3.58
373	374	4.142160	CGTGATGGAGGAAGTATCTCACAA	60.142	45.833	0.00	0.00	32.98	3.33
374	375	5.355596	GTGATGGAGGAAGTATCTCACAAG	58.644	45.833	0.00	0.00	33.49	3.16
375	376	5.026121	TGATGGAGGAAGTATCTCACAAGT	58.974	41.667	0.00	0.00	33.18	3.16
376	377	5.127845	TGATGGAGGAAGTATCTCACAAGTC	59.872	44.000	0.00	0.00	33.18	3.01
377	378	4.416516	TGGAGGAAGTATCTCACAAGTCA	58.583	43.478	0.00	0.00	33.18	3.41
382	383	6.831976	AGGAAGTATCTCACAAGTCAAAAGT	58.168	36.000	0.00	0.00	0.00	2.66
480	491	6.316890	AGCAAACTTTGAGAAATGTTTTGCAT	59.683	30.769	16.04	2.01	40.03	3.96
481	492	6.412653	GCAAACTTTGAGAAATGTTTTGCATG	59.587	34.615	5.65	0.00	37.96	4.06
482	493	5.662211	ACTTTGAGAAATGTTTTGCATGC	57.338	34.783	11.82	11.82	37.96	4.06
494	505	6.630444	TGTTTTGCATGCATACCAAAATTT	57.370	29.167	26.65	0.00	39.66	1.82
498	509	5.082251	TGCATGCATACCAAAATTTAGCA	57.918	34.783	18.46	0.00	34.78	3.49
511	522	7.440856	ACCAAAATTTAGCACGAAATGACATTT	59.559	29.630	13.24	13.24	34.64	2.32
513	524	6.393720	AATTTAGCACGAAATGACATTTGC	57.606	33.333	18.00	15.31	31.47	3.68
521	532	3.364864	CGAAATGACATTTGCGGAAGTCA	60.365	43.478	18.00	12.85	44.16	3.41
556	567	4.764823	AGATCAGCGGTCCAAAATGTTTTA	59.235	37.500	0.00	0.00	0.00	1.52
559	570	5.848406	TCAGCGGTCCAAAATGTTTTAAAT	58.152	33.333	0.00	0.00	0.00	1.40
561	572	7.087639	TCAGCGGTCCAAAATGTTTTAAATAG	58.912	34.615	0.00	0.00	0.00	1.73
580	591	7.408756	AAATAGTAGCATTTTTGGAGCATCA	57.591	32.000	0.00	0.00	36.25	3.07
582	593	5.927281	AGTAGCATTTTTGGAGCATCAAT	57.073	34.783	0.00	0.00	36.25	2.57
583	594	6.290294	AGTAGCATTTTTGGAGCATCAATT	57.710	33.333	0.00	0.00	36.25	2.32
584	595	6.704310	AGTAGCATTTTTGGAGCATCAATTT	58.296	32.000	0.00	0.00	36.25	1.82
585	596	6.815142	AGTAGCATTTTTGGAGCATCAATTTC	59.185	34.615	0.00	0.00	36.25	2.17
586	597	4.628333	AGCATTTTTGGAGCATCAATTTCG	59.372	37.500	0.00	0.00	36.25	3.46
587	598	4.201744	GCATTTTTGGAGCATCAATTTCGG	60.202	41.667	0.00	0.00	36.25	4.30
588	599	4.599047	TTTTTGGAGCATCAATTTCGGT	57.401	36.364	0.00	0.00	36.25	4.69
620	631	4.725359	TGACTTGCATGAATGTCATTTCG	58.275	39.130	16.56	0.00	34.28	3.46
640	651	2.477375	CGTGCTGAAATTTTGCAAGCAT	59.523	40.909	17.39	0.00	38.50	3.79
642	653	4.201551	CGTGCTGAAATTTTGCAAGCATAG	60.202	41.667	17.39	12.33	38.50	2.23
647	658	7.173562	TGCTGAAATTTTGCAAGCATAGAAAAT	59.826	29.630	14.60	0.00	33.48	1.82
730	741	0.109532	TTTCACCGTGCATGAGGGAA	59.890	50.000	7.72	7.70	33.43	3.97
742	753	2.099141	TGAGGGAACATTTGAGCTCG	57.901	50.000	9.64	0.00	0.00	5.03
746	757	1.613255	GGGAACATTTGAGCTCGGGAA	60.613	52.381	9.64	4.35	0.00	3.97
749	760	1.813513	ACATTTGAGCTCGGGAACAG	58.186	50.000	9.64	3.67	0.00	3.16
761	772	1.203994	CGGGAACAGATACTCCACGTT	59.796	52.381	0.00	0.00	32.95	3.99
777	788	3.058914	CCACGTTCCTCACAAGTTCATTC	60.059	47.826	0.00	0.00	0.00	2.67
822	833	7.730364	AAGCGAGAGATTTACTTCAGAAAAA	57.270	32.000	0.00	0.00	35.29	1.94
848	859	9.753674	AAGGATGATTAGATAAAACTGGTTTCA	57.246	29.630	0.00	0.00	31.45	2.69
849	860	9.927081	AGGATGATTAGATAAAACTGGTTTCAT	57.073	29.630	0.00	0.00	31.45	2.57
862	873	4.704540	ACTGGTTTCATAAATCGGCATTGA	59.295	37.500	0.00	0.00	30.81	2.57
876	887	4.035558	TCGGCATTGATATTCTTGCTTGTC	59.964	41.667	0.00	0.00	35.46	3.18
877	888	4.201940	CGGCATTGATATTCTTGCTTGTCA	60.202	41.667	0.00	0.00	35.46	3.58
885	897	8.054152	TGATATTCTTGCTTGTCATTTGCTTA	57.946	30.769	0.00	0.00	0.00	3.09
923	935	7.118390	AGACTCTACATCAAAAAGATCCAAACG	59.882	37.037	0.00	0.00	33.72	3.60
925	937	3.913089	ACATCAAAAAGATCCAAACGGC	58.087	40.909	0.00	0.00	33.72	5.68
927	939	1.268352	TCAAAAAGATCCAAACGGCCG	59.732	47.619	26.86	26.86	0.00	6.13
928	940	0.038618	AAAAAGATCCAAACGGCCGC	60.039	50.000	28.58	6.84	0.00	6.53
943	955	4.210304	CGCCGCGTAGAAGCAAGC	62.210	66.667	4.92	0.00	36.85	4.01
944	956	2.815647	GCCGCGTAGAAGCAAGCT	60.816	61.111	4.92	0.00	36.85	3.74
1020	1051	1.654137	GAAACCACACGTTGCAGCG	60.654	57.895	21.95	21.95	33.93	5.18
1191	1246	2.125912	CCCTGTCGTTCTGCTCCG	60.126	66.667	0.00	0.00	0.00	4.63
1505	1578	8.455598	CTCTAGTTCAGAGCACTAGTTTTTAC	57.544	38.462	8.54	0.00	44.34	2.01
1506	1579	7.948357	TCTAGTTCAGAGCACTAGTTTTTACA	58.052	34.615	8.54	0.00	43.01	2.41
1507	1580	8.082852	TCTAGTTCAGAGCACTAGTTTTTACAG	58.917	37.037	8.54	0.00	43.01	2.74
1517	1591	9.694137	AGCACTAGTTTTTACAGTACTTTCTAG	57.306	33.333	0.00	0.00	0.00	2.43
1526	1600	7.493743	TTACAGTACTTTCTAGCCTCTATCG	57.506	40.000	0.00	0.00	0.00	2.92
1527	1601	4.822896	ACAGTACTTTCTAGCCTCTATCGG	59.177	45.833	0.00	0.00	0.00	4.18
1529	1603	5.531659	CAGTACTTTCTAGCCTCTATCGGAA	59.468	44.000	0.00	0.00	0.00	4.30
1691	1773	1.134946	GCATTTTGGGATTCAGTCGGG	59.865	52.381	0.00	0.00	0.00	5.14
1704	1786	1.001974	CAGTCGGGTGATTTCCTGTGA	59.998	52.381	0.00	0.00	35.51	3.58
1727	1809	6.531594	TGATTCTAGCTAACACAATCTGAACG	59.468	38.462	0.00	0.00	0.00	3.95
1764	1862	6.643388	ACTGTTACAGATGATGCACAAGATA	58.357	36.000	20.07	0.00	35.18	1.98
1795	1893	3.398406	TCTAATGTGTGCAATCGTGTGT	58.602	40.909	0.00	0.00	0.00	3.72
1841	1939	1.537814	ATGCACACGGGGAGAACGTA	61.538	55.000	0.00	0.00	43.58	3.57
1888	1986	1.895798	CTCAGCTGGTCTGGACTACAA	59.104	52.381	15.13	0.00	43.06	2.41
1958	2056	6.145696	CACTTGTGCAGGTTACTACTACTTTC	59.854	42.308	0.00	0.00	0.00	2.62
1983	2181	8.875168	TCTACTACAGTACCTATTAGGGTCTAC	58.125	40.741	14.26	7.60	40.58	2.59
1985	2183	7.516452	ACTACAGTACCTATTAGGGTCTACAG	58.484	42.308	14.26	12.13	40.58	2.74
2008	2233	7.243604	AGATTGTCTCTGAGAATGAGAAGTT	57.756	36.000	9.31	0.00	31.12	2.66
2036	2261	4.234574	CCGTAACTTTTGCCCTCAAATTC	58.765	43.478	0.00	0.00	41.37	2.17
2055	2280	2.257286	CTGGCGAACGAATGCAAGGG	62.257	60.000	0.00	0.00	0.00	3.95
2058	2283	0.096454	GCGAACGAATGCAAGGGTAC	59.904	55.000	0.00	0.00	0.00	3.34
2079	2331	1.071699	AGGAAACGTACTGTGCCATGT	59.928	47.619	0.00	0.00	0.00	3.21
2088	2340	5.591472	ACGTACTGTGCCATGTAGATACTTA	59.409	40.000	0.00	0.00	0.00	2.24
2090	2342	7.145985	CGTACTGTGCCATGTAGATACTTAAT	58.854	38.462	0.00	0.00	0.00	1.40
2265	2522	8.381387	GTTGTTTTCGTTTATCCTCATCTACTC	58.619	37.037	0.00	0.00	0.00	2.59
2331	2588	0.763652	CCTCCATCCACAGGATCCAG	59.236	60.000	15.82	8.89	40.98	3.86
2348	2605	4.090761	TCCAGAGGCCACAAATATCATC	57.909	45.455	5.01	0.00	0.00	2.92
2414	2671	6.578919	CGACTAAATTGTGCCTTCTTTTTCTC	59.421	38.462	0.00	0.00	0.00	2.87
2521	2778	9.900264	GCAATGTTTAAAACTGTTCTTGTTTAG	57.100	29.630	0.00	0.00	36.72	1.85
2653	2921	1.824852	TCAAGCTGTAAGATCCGCTCA	59.175	47.619	0.00	0.00	34.07	4.26
2708	2976	2.624838	CAGAATGCTGGTTCACTTGGTT	59.375	45.455	0.00	0.00	38.51	3.67
2712	2980	1.515521	GCTGGTTCACTTGGTTCCGG	61.516	60.000	0.00	0.00	0.00	5.14
2741	3009	2.015587	GAGCCTTCATGCTTCTCAAGG	58.984	52.381	4.60	4.60	42.95	3.61
2753	3021	3.329386	CTTCTCAAGGAGCATCGACAAA	58.671	45.455	0.00	0.00	34.37	2.83
2754	3022	3.616956	TCTCAAGGAGCATCGACAAAT	57.383	42.857	0.00	0.00	34.37	2.32
2755	3023	3.525537	TCTCAAGGAGCATCGACAAATC	58.474	45.455	0.00	0.00	34.37	2.17
2790	3058	0.678048	GCCTGGCAGTAACCTTGAGG	60.678	60.000	15.17	0.00	42.17	3.86
2813	3081	3.828657	GTCCTCAAAGGGGACGTAC	57.171	57.895	0.00	0.00	42.84	3.67
2897	3165	0.748729	TTGCGAAAACCGGTGGAACT	60.749	50.000	8.52	0.00	39.04	3.01
2900	3168	1.868469	CGAAAACCGGTGGAACTGTA	58.132	50.000	8.52	0.00	43.33	2.74
2977	3245	9.736023	AAAATTTAACATGTCACTCAGAGTTTC	57.264	29.630	0.00	0.00	32.92	2.78
2978	3246	8.450578	AATTTAACATGTCACTCAGAGTTTCA	57.549	30.769	0.00	3.66	32.92	2.69
2991	3259	7.227512	CACTCAGAGTTTCATTTCTTGGTTACT	59.772	37.037	0.00	0.00	0.00	2.24
3029	3297	4.141620	ACCTCACCAGTTATATCTTGCCTG	60.142	45.833	0.00	0.00	0.00	4.85
3033	3301	6.759272	TCACCAGTTATATCTTGCCTGATAC	58.241	40.000	0.00	0.00	32.51	2.24
3131	3399	2.072298	CTTCAGGGAACAAGAAGAGCG	58.928	52.381	0.00	0.00	43.38	5.03
3139	3407	4.695928	GGGAACAAGAAGAGCGTAGATTTT	59.304	41.667	0.00	0.00	0.00	1.82
3148	3416	7.147976	AGAAGAGCGTAGATTTTTGCATTTTT	58.852	30.769	0.00	0.00	0.00	1.94
3149	3417	6.934561	AGAGCGTAGATTTTTGCATTTTTC	57.065	33.333	0.00	0.00	0.00	2.29
3152	3420	7.327032	AGAGCGTAGATTTTTGCATTTTTCTTC	59.673	33.333	0.00	0.00	0.00	2.87
3162	3441	6.831727	TTGCATTTTTCTTCTCACATTGTG	57.168	33.333	10.64	10.64	34.45	3.33
3180	3459	3.674997	TGTGAAGGCAGATTGACCTTAC	58.325	45.455	0.00	0.00	46.33	2.34
3196	3475	2.353803	CCTTACTTTCCCGACTGGTGAG	60.354	54.545	0.00	0.00	34.77	3.51
3200	3479	0.471211	TTTCCCGACTGGTGAGAGGT	60.471	55.000	0.00	0.00	34.77	3.85
3233	3512	2.108952	ACAGGAGGAGAATGTTTTGGCT	59.891	45.455	0.00	0.00	0.00	4.75
3235	3514	3.192212	CAGGAGGAGAATGTTTTGGCTTC	59.808	47.826	0.00	0.00	0.00	3.86
3239	3518	4.218312	AGGAGAATGTTTTGGCTTCAACT	58.782	39.130	0.00	0.00	0.00	3.16
3272	3551	6.320418	CCATTTTGGTAGGATTACTTGGGTAC	59.680	42.308	0.00	0.00	31.35	3.34
3275	3554	4.035112	TGGTAGGATTACTTGGGTACTGG	58.965	47.826	0.00	0.00	0.00	4.00
3276	3555	4.035814	GGTAGGATTACTTGGGTACTGGT	58.964	47.826	0.00	0.00	0.00	4.00
3278	3557	3.527937	AGGATTACTTGGGTACTGGTGT	58.472	45.455	0.00	0.00	0.00	4.16
3280	3559	3.262405	GGATTACTTGGGTACTGGTGTGA	59.738	47.826	0.00	0.00	0.00	3.58
3281	3560	3.756933	TTACTTGGGTACTGGTGTGAC	57.243	47.619	0.00	0.00	0.00	3.67
3282	3561	0.391597	ACTTGGGTACTGGTGTGACG	59.608	55.000	0.00	0.00	0.00	4.35
3285	3564	1.295423	GGGTACTGGTGTGACGCAT	59.705	57.895	0.00	0.00	0.00	4.73
3286	3565	0.533491	GGGTACTGGTGTGACGCATA	59.467	55.000	0.00	0.00	0.00	3.14
3287	3566	1.138266	GGGTACTGGTGTGACGCATAT	59.862	52.381	0.00	0.00	0.00	1.78
3288	3567	2.201732	GGTACTGGTGTGACGCATATG	58.798	52.381	0.00	0.00	0.00	1.78
3290	3569	2.472695	ACTGGTGTGACGCATATGTT	57.527	45.000	4.29	0.00	0.00	2.71
3291	3570	2.778299	ACTGGTGTGACGCATATGTTT	58.222	42.857	4.29	0.00	0.00	2.83
3293	3572	3.058293	ACTGGTGTGACGCATATGTTTTG	60.058	43.478	4.29	0.00	0.00	2.44
3294	3573	3.142174	TGGTGTGACGCATATGTTTTGA	58.858	40.909	4.29	0.00	0.00	2.69
3295	3574	3.188254	TGGTGTGACGCATATGTTTTGAG	59.812	43.478	4.29	0.00	0.00	3.02
3296	3575	3.426159	GGTGTGACGCATATGTTTTGAGG	60.426	47.826	4.29	0.00	0.00	3.86
3297	3576	3.435327	GTGTGACGCATATGTTTTGAGGA	59.565	43.478	4.29	0.00	0.00	3.71
3298	3577	3.435327	TGTGACGCATATGTTTTGAGGAC	59.565	43.478	4.29	0.00	0.00	3.85
3299	3578	3.435327	GTGACGCATATGTTTTGAGGACA	59.565	43.478	4.29	0.00	0.00	4.02
3313	3705	8.204160	TGTTTTGAGGACATATGATAAGACGAT	58.796	33.333	10.38	0.00	0.00	3.73
3317	3709	6.490040	TGAGGACATATGATAAGACGATGTGA	59.510	38.462	10.38	0.00	31.03	3.58
3322	3714	8.893219	ACATATGATAAGACGATGTGATGTTT	57.107	30.769	10.38	0.00	29.75	2.83
3325	3717	6.806120	TGATAAGACGATGTGATGTTTACG	57.194	37.500	0.00	0.00	0.00	3.18
3330	3722	1.999735	CGATGTGATGTTTACGGTGCT	59.000	47.619	0.00	0.00	0.00	4.40
3338	3730	1.527736	TGTTTACGGTGCTTAAGTGCG	59.472	47.619	4.02	0.00	35.36	5.34
3358	3750	4.621068	CGAATAGCACATGGACAAATGT	57.379	40.909	0.00	0.00	41.50	2.71
3367	3807	5.064452	GCACATGGACAAATGTTTTGTTTCA	59.936	36.000	7.03	8.99	38.75	2.69
3371	3811	4.574013	TGGACAAATGTTTTGTTTCATGCC	59.426	37.500	7.03	3.89	31.96	4.40
3389	3829	8.481492	TTCATGCCCATCATTTTTATCACTAT	57.519	30.769	0.00	0.00	31.79	2.12
3441	3881	7.134842	AGGATATCAAAATCCCAGATTGGTTT	58.865	34.615	4.83	0.00	45.74	3.27
3468	3909	5.602145	AGGACAAACCCAGATTGATTTTCAA	59.398	36.000	0.00	0.00	39.06	2.69
3508	3949	5.852738	ACTGAATCAGAAAACATGTCGAG	57.147	39.130	18.20	0.00	35.18	4.04
3569	4010	2.082366	CAACTCACGCGCAAATGGC	61.082	57.895	5.73	0.00	39.90	4.40
3577	4018	0.590732	CGCGCAAATGGCAGAAGATC	60.591	55.000	8.75	0.00	45.17	2.75
3581	4022	2.356695	CGCAAATGGCAGAAGATCATCA	59.643	45.455	0.10	0.00	45.17	3.07
3598	4039	9.950496	AAGATCATCATTTCAGTTAGTACAACT	57.050	29.630	0.00	0.19	0.00	3.16
3625	4066	5.692115	TTGCTTCCAGTATCCTCATACAA	57.308	39.130	0.00	0.00	37.89	2.41
3754	4195	4.870123	AAAAACCTGTGCATGCATTAGA	57.130	36.364	25.64	7.55	0.00	2.10
3755	4196	4.445452	AAAACCTGTGCATGCATTAGAG	57.555	40.909	25.64	18.78	0.00	2.43
3756	4197	3.354948	AACCTGTGCATGCATTAGAGA	57.645	42.857	25.64	0.00	0.00	3.10
3757	4198	3.572632	ACCTGTGCATGCATTAGAGAT	57.427	42.857	25.64	11.09	0.00	2.75
3758	4199	3.894759	ACCTGTGCATGCATTAGAGATT	58.105	40.909	25.64	7.81	0.00	2.40
3759	4200	5.039920	ACCTGTGCATGCATTAGAGATTA	57.960	39.130	25.64	0.00	0.00	1.75
3780	4242	3.615155	AGAGTATGCTTTGAAGGCCTTC	58.385	45.455	34.48	34.48	39.91	3.46
3815	4286	7.441458	GTGTAGAACTTTCAGTGTTCAGGTTAT	59.559	37.037	8.91	0.00	44.30	1.89
3828	4299	3.747099	CAGGTTATCTGAACTTTGCCG	57.253	47.619	0.00	0.00	46.18	5.69
3858	4329	0.469705	TGCCATTTTGGTGCTCAGGT	60.470	50.000	0.00	0.00	40.46	4.00
3863	4334	3.157087	CATTTTGGTGCTCAGGTTACCT	58.843	45.455	0.00	0.00	35.51	3.08
3907	4379	7.386851	TCTTTTCCTCTTTGTACTCCTATGTG	58.613	38.462	0.00	0.00	0.00	3.21
4033	4505	5.445069	TGTCAAACCTTCTTTCTGATTGGA	58.555	37.500	0.00	0.00	0.00	3.53
4037	4509	3.949132	ACCTTCTTTCTGATTGGAGAGC	58.051	45.455	0.00	0.00	0.00	4.09
4066	4538	2.442126	AGAACTCCGAAACTTTCCCCTT	59.558	45.455	0.00	0.00	0.00	3.95
4253	4725	2.832931	CTGGAAGGCTCAGTTGACG	58.167	57.895	0.00	0.00	0.00	4.35
4353	4825	0.618458	GAGGTATTGTGCTCCCACCA	59.382	55.000	0.00	0.00	41.35	4.17
4405	4877	6.012745	ACAGAAGAAATAAGTGGCTGGAAAT	58.987	36.000	0.00	0.00	0.00	2.17
4409	4881	4.400567	AGAAATAAGTGGCTGGAAATGAGC	59.599	41.667	0.00	0.00	35.57	4.26
4432	4904	2.224992	TGTTGGGCCTTTGCTAGAATCA	60.225	45.455	4.53	0.00	37.74	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.879103	TTGAAGTTTAGCCAGAGGGG	57.121	50.000	0.00	0.00	40.85	4.79
1	2	3.084786	CCTTTGAAGTTTAGCCAGAGGG	58.915	50.000	0.00	0.00	30.95	4.30
2	3	3.756117	ACCTTTGAAGTTTAGCCAGAGG	58.244	45.455	0.00	0.00	37.95	3.69
3	4	6.486993	ACTTTACCTTTGAAGTTTAGCCAGAG	59.513	38.462	0.00	0.00	32.43	3.35
4	5	6.362248	ACTTTACCTTTGAAGTTTAGCCAGA	58.638	36.000	0.00	0.00	32.43	3.86
5	6	6.635030	ACTTTACCTTTGAAGTTTAGCCAG	57.365	37.500	0.00	0.00	32.43	4.85
6	7	7.511268	TCTACTTTACCTTTGAAGTTTAGCCA	58.489	34.615	0.00	0.00	37.32	4.75
7	8	7.119407	CCTCTACTTTACCTTTGAAGTTTAGCC	59.881	40.741	0.00	0.00	37.32	3.93
8	9	7.119407	CCCTCTACTTTACCTTTGAAGTTTAGC	59.881	40.741	0.00	0.00	37.32	3.09
9	10	8.373220	TCCCTCTACTTTACCTTTGAAGTTTAG	58.627	37.037	0.00	0.00	37.32	1.85
10	11	8.266363	TCCCTCTACTTTACCTTTGAAGTTTA	57.734	34.615	0.00	0.00	37.32	2.01
11	12	7.072076	TCTCCCTCTACTTTACCTTTGAAGTTT	59.928	37.037	0.00	0.00	37.32	2.66
12	13	6.557633	TCTCCCTCTACTTTACCTTTGAAGTT	59.442	38.462	0.00	0.00	37.32	2.66
13	14	6.082707	TCTCCCTCTACTTTACCTTTGAAGT	58.917	40.000	0.00	0.00	39.32	3.01
14	15	6.607004	TCTCCCTCTACTTTACCTTTGAAG	57.393	41.667	0.00	0.00	0.00	3.02
15	16	7.147444	TGTTTCTCCCTCTACTTTACCTTTGAA	60.147	37.037	0.00	0.00	0.00	2.69
16	17	6.328148	TGTTTCTCCCTCTACTTTACCTTTGA	59.672	38.462	0.00	0.00	0.00	2.69
17	18	6.531021	TGTTTCTCCCTCTACTTTACCTTTG	58.469	40.000	0.00	0.00	0.00	2.77
18	19	6.758806	TGTTTCTCCCTCTACTTTACCTTT	57.241	37.500	0.00	0.00	0.00	3.11
19	20	6.272558	ACATGTTTCTCCCTCTACTTTACCTT	59.727	38.462	0.00	0.00	0.00	3.50
20	21	5.785940	ACATGTTTCTCCCTCTACTTTACCT	59.214	40.000	0.00	0.00	0.00	3.08
21	22	5.875359	CACATGTTTCTCCCTCTACTTTACC	59.125	44.000	0.00	0.00	0.00	2.85
22	23	6.698380	TCACATGTTTCTCCCTCTACTTTAC	58.302	40.000	0.00	0.00	0.00	2.01
23	24	6.928348	TCACATGTTTCTCCCTCTACTTTA	57.072	37.500	0.00	0.00	0.00	1.85
24	25	5.825593	TCACATGTTTCTCCCTCTACTTT	57.174	39.130	0.00	0.00	0.00	2.66
25	26	5.825593	TTCACATGTTTCTCCCTCTACTT	57.174	39.130	0.00	0.00	0.00	2.24
26	27	6.098982	CCTATTCACATGTTTCTCCCTCTACT	59.901	42.308	0.00	0.00	0.00	2.57
27	28	6.098409	TCCTATTCACATGTTTCTCCCTCTAC	59.902	42.308	0.00	0.00	0.00	2.59
28	29	6.202331	TCCTATTCACATGTTTCTCCCTCTA	58.798	40.000	0.00	0.00	0.00	2.43
29	30	5.032846	TCCTATTCACATGTTTCTCCCTCT	58.967	41.667	0.00	0.00	0.00	3.69
30	31	5.359194	TCCTATTCACATGTTTCTCCCTC	57.641	43.478	0.00	0.00	0.00	4.30
31	32	5.779241	TTCCTATTCACATGTTTCTCCCT	57.221	39.130	0.00	0.00	0.00	4.20
32	33	7.410120	AATTTCCTATTCACATGTTTCTCCC	57.590	36.000	0.00	0.00	0.00	4.30
33	34	9.358872	GAAAATTTCCTATTCACATGTTTCTCC	57.641	33.333	0.00	0.00	0.00	3.71
34	35	9.912634	TGAAAATTTCCTATTCACATGTTTCTC	57.087	29.630	0.00	0.00	0.00	2.87
38	39	9.426837	CACATGAAAATTTCCTATTCACATGTT	57.573	29.630	0.00	0.00	42.03	2.71
39	40	7.546667	GCACATGAAAATTTCCTATTCACATGT	59.453	33.333	0.00	0.00	43.79	3.21
40	41	7.546316	TGCACATGAAAATTTCCTATTCACATG	59.454	33.333	0.00	0.00	36.03	3.21
41	42	7.613585	TGCACATGAAAATTTCCTATTCACAT	58.386	30.769	0.00	0.00	36.03	3.21
42	43	6.990798	TGCACATGAAAATTTCCTATTCACA	58.009	32.000	0.00	0.00	36.03	3.58
43	44	7.274250	GTCTGCACATGAAAATTTCCTATTCAC	59.726	37.037	0.00	0.00	36.03	3.18
44	45	7.039853	TGTCTGCACATGAAAATTTCCTATTCA	60.040	33.333	0.00	0.00	37.47	2.57
45	46	7.274250	GTGTCTGCACATGAAAATTTCCTATTC	59.726	37.037	0.00	0.00	44.64	1.75
46	47	7.092716	GTGTCTGCACATGAAAATTTCCTATT	58.907	34.615	0.00	0.00	44.64	1.73
47	48	6.624423	GTGTCTGCACATGAAAATTTCCTAT	58.376	36.000	0.00	0.00	44.64	2.57
48	49	6.012658	GTGTCTGCACATGAAAATTTCCTA	57.987	37.500	0.00	0.00	44.64	2.94
49	50	4.874970	GTGTCTGCACATGAAAATTTCCT	58.125	39.130	0.00	0.00	44.64	3.36
70	71	6.039941	TCCTTTGAACGGAACACATAAATTGT	59.960	34.615	0.00	0.00	39.91	2.71
71	72	6.442952	TCCTTTGAACGGAACACATAAATTG	58.557	36.000	0.00	0.00	0.00	2.32
72	73	6.642707	TCCTTTGAACGGAACACATAAATT	57.357	33.333	0.00	0.00	0.00	1.82
73	74	6.642707	TTCCTTTGAACGGAACACATAAAT	57.357	33.333	0.00	0.00	35.70	1.40
74	75	6.442952	CATTCCTTTGAACGGAACACATAAA	58.557	36.000	5.20	0.00	42.87	1.40
75	76	5.048364	CCATTCCTTTGAACGGAACACATAA	60.048	40.000	5.20	0.00	42.87	1.90
76	77	4.457603	CCATTCCTTTGAACGGAACACATA	59.542	41.667	5.20	0.00	42.87	2.29
77	78	3.255642	CCATTCCTTTGAACGGAACACAT	59.744	43.478	5.20	0.00	42.87	3.21
78	79	2.621055	CCATTCCTTTGAACGGAACACA	59.379	45.455	5.20	0.00	42.87	3.72
79	80	2.882137	TCCATTCCTTTGAACGGAACAC	59.118	45.455	5.20	0.00	39.76	3.32
80	81	3.216187	TCCATTCCTTTGAACGGAACA	57.784	42.857	5.20	0.00	39.76	3.18
81	82	3.756434	TGATCCATTCCTTTGAACGGAAC	59.244	43.478	5.20	0.00	45.25	3.62
82	83	4.027674	TGATCCATTCCTTTGAACGGAA	57.972	40.909	5.57	5.57	45.25	4.30
83	84	3.712016	TGATCCATTCCTTTGAACGGA	57.288	42.857	0.00	0.00	46.08	4.69
84	85	4.782019	TTTGATCCATTCCTTTGAACGG	57.218	40.909	0.00	0.00	35.12	4.44
85	86	6.012658	TCTTTTGATCCATTCCTTTGAACG	57.987	37.500	0.00	0.00	32.13	3.95
86	87	7.928167	ACTTTCTTTTGATCCATTCCTTTGAAC	59.072	33.333	0.00	0.00	32.13	3.18
87	88	7.927629	CACTTTCTTTTGATCCATTCCTTTGAA	59.072	33.333	0.00	0.00	34.33	2.69
88	89	7.436118	CACTTTCTTTTGATCCATTCCTTTGA	58.564	34.615	0.00	0.00	0.00	2.69
89	90	6.647895	CCACTTTCTTTTGATCCATTCCTTTG	59.352	38.462	0.00	0.00	0.00	2.77
90	91	6.239686	CCCACTTTCTTTTGATCCATTCCTTT	60.240	38.462	0.00	0.00	0.00	3.11
91	92	5.246883	CCCACTTTCTTTTGATCCATTCCTT	59.753	40.000	0.00	0.00	0.00	3.36
92	93	4.774200	CCCACTTTCTTTTGATCCATTCCT	59.226	41.667	0.00	0.00	0.00	3.36
93	94	4.772100	TCCCACTTTCTTTTGATCCATTCC	59.228	41.667	0.00	0.00	0.00	3.01
94	95	5.105595	CCTCCCACTTTCTTTTGATCCATTC	60.106	44.000	0.00	0.00	0.00	2.67
95	96	4.774200	CCTCCCACTTTCTTTTGATCCATT	59.226	41.667	0.00	0.00	0.00	3.16
96	97	4.044571	TCCTCCCACTTTCTTTTGATCCAT	59.955	41.667	0.00	0.00	0.00	3.41
97	98	3.397618	TCCTCCCACTTTCTTTTGATCCA	59.602	43.478	0.00	0.00	0.00	3.41
98	99	3.759086	GTCCTCCCACTTTCTTTTGATCC	59.241	47.826	0.00	0.00	0.00	3.36
99	100	3.437049	CGTCCTCCCACTTTCTTTTGATC	59.563	47.826	0.00	0.00	0.00	2.92
100	101	3.181443	ACGTCCTCCCACTTTCTTTTGAT	60.181	43.478	0.00	0.00	0.00	2.57
101	102	2.171870	ACGTCCTCCCACTTTCTTTTGA	59.828	45.455	0.00	0.00	0.00	2.69
102	103	2.572290	ACGTCCTCCCACTTTCTTTTG	58.428	47.619	0.00	0.00	0.00	2.44
103	104	3.292492	AACGTCCTCCCACTTTCTTTT	57.708	42.857	0.00	0.00	0.00	2.27
104	105	3.292492	AAACGTCCTCCCACTTTCTTT	57.708	42.857	0.00	0.00	0.00	2.52
105	106	3.211865	GAAAACGTCCTCCCACTTTCTT	58.788	45.455	0.00	0.00	0.00	2.52
106	107	2.486727	GGAAAACGTCCTCCCACTTTCT	60.487	50.000	4.82	0.00	43.98	2.52
107	108	1.878088	GGAAAACGTCCTCCCACTTTC	59.122	52.381	4.82	1.31	43.98	2.62
108	109	1.977056	GGAAAACGTCCTCCCACTTT	58.023	50.000	4.82	0.00	43.98	2.66
109	110	3.719816	GGAAAACGTCCTCCCACTT	57.280	52.632	4.82	0.00	43.98	3.16
118	119	5.480205	AGACTAGGATCAAAGGAAAACGTC	58.520	41.667	0.00	0.00	0.00	4.34
119	120	5.480205	GAGACTAGGATCAAAGGAAAACGT	58.520	41.667	0.00	0.00	0.00	3.99
120	121	4.563184	CGAGACTAGGATCAAAGGAAAACG	59.437	45.833	0.00	0.00	0.00	3.60
121	122	5.480205	ACGAGACTAGGATCAAAGGAAAAC	58.520	41.667	0.00	0.00	0.00	2.43
122	123	5.740290	ACGAGACTAGGATCAAAGGAAAA	57.260	39.130	0.00	0.00	0.00	2.29
123	124	5.360144	CCTACGAGACTAGGATCAAAGGAAA	59.640	44.000	0.00	0.00	36.10	3.13
124	125	4.888239	CCTACGAGACTAGGATCAAAGGAA	59.112	45.833	0.00	0.00	36.10	3.36
125	126	4.462133	CCTACGAGACTAGGATCAAAGGA	58.538	47.826	0.00	0.00	36.10	3.36
126	127	3.570550	CCCTACGAGACTAGGATCAAAGG	59.429	52.174	0.00	1.56	36.10	3.11
127	128	4.462133	TCCCTACGAGACTAGGATCAAAG	58.538	47.826	0.00	0.00	36.10	2.77
128	129	4.515028	TCCCTACGAGACTAGGATCAAA	57.485	45.455	0.00	0.00	36.10	2.69
129	130	4.515028	TTCCCTACGAGACTAGGATCAA	57.485	45.455	0.00	0.00	36.10	2.57
130	131	4.515028	TTTCCCTACGAGACTAGGATCA	57.485	45.455	0.00	0.00	36.10	2.92
131	132	4.261698	GCTTTTCCCTACGAGACTAGGATC	60.262	50.000	0.00	0.00	36.10	3.36
132	133	3.637694	GCTTTTCCCTACGAGACTAGGAT	59.362	47.826	0.00	0.00	36.10	3.24
133	134	3.022406	GCTTTTCCCTACGAGACTAGGA	58.978	50.000	0.00	0.00	36.10	2.94
134	135	2.758979	TGCTTTTCCCTACGAGACTAGG	59.241	50.000	0.00	0.00	34.04	3.02
135	136	3.192844	TGTGCTTTTCCCTACGAGACTAG	59.807	47.826	0.00	0.00	0.00	2.57
136	137	3.159472	TGTGCTTTTCCCTACGAGACTA	58.841	45.455	0.00	0.00	0.00	2.59
137	138	1.968493	TGTGCTTTTCCCTACGAGACT	59.032	47.619	0.00	0.00	0.00	3.24
138	139	2.450609	TGTGCTTTTCCCTACGAGAC	57.549	50.000	0.00	0.00	0.00	3.36
139	140	2.631062	TCTTGTGCTTTTCCCTACGAGA	59.369	45.455	0.00	0.00	32.60	4.04
140	141	3.040147	TCTTGTGCTTTTCCCTACGAG	57.960	47.619	0.00	0.00	0.00	4.18
141	142	3.478857	TTCTTGTGCTTTTCCCTACGA	57.521	42.857	0.00	0.00	0.00	3.43
142	143	4.455877	AGAATTCTTGTGCTTTTCCCTACG	59.544	41.667	0.88	0.00	0.00	3.51
143	144	5.966742	AGAATTCTTGTGCTTTTCCCTAC	57.033	39.130	0.88	0.00	0.00	3.18
144	145	5.648092	GCTAGAATTCTTGTGCTTTTCCCTA	59.352	40.000	14.36	0.00	0.00	3.53
145	146	4.460731	GCTAGAATTCTTGTGCTTTTCCCT	59.539	41.667	14.36	0.00	0.00	4.20
146	147	4.218417	TGCTAGAATTCTTGTGCTTTTCCC	59.782	41.667	14.36	0.00	0.00	3.97
147	148	5.376854	TGCTAGAATTCTTGTGCTTTTCC	57.623	39.130	14.36	0.00	0.00	3.13
148	149	6.032717	GGATGCTAGAATTCTTGTGCTTTTC	58.967	40.000	14.36	12.73	0.00	2.29
149	150	5.477984	TGGATGCTAGAATTCTTGTGCTTTT	59.522	36.000	14.36	5.91	0.00	2.27
150	151	5.012239	TGGATGCTAGAATTCTTGTGCTTT	58.988	37.500	14.36	8.04	0.00	3.51
151	152	4.397417	GTGGATGCTAGAATTCTTGTGCTT	59.603	41.667	14.36	13.16	0.00	3.91
152	153	3.944015	GTGGATGCTAGAATTCTTGTGCT	59.056	43.478	14.36	6.42	0.00	4.40
153	154	3.944015	AGTGGATGCTAGAATTCTTGTGC	59.056	43.478	14.36	15.44	0.00	4.57
154	155	5.645067	TCAAGTGGATGCTAGAATTCTTGTG	59.355	40.000	14.36	5.91	34.57	3.33
155	156	5.809001	TCAAGTGGATGCTAGAATTCTTGT	58.191	37.500	14.36	0.00	34.57	3.16
156	157	6.404074	GGTTCAAGTGGATGCTAGAATTCTTG	60.404	42.308	14.36	13.01	34.35	3.02
157	158	5.649831	GGTTCAAGTGGATGCTAGAATTCTT	59.350	40.000	14.36	0.00	0.00	2.52
158	159	5.045286	AGGTTCAAGTGGATGCTAGAATTCT	60.045	40.000	13.56	13.56	0.00	2.40
159	160	5.189180	AGGTTCAAGTGGATGCTAGAATTC	58.811	41.667	0.00	0.00	0.00	2.17
160	161	5.184892	AGGTTCAAGTGGATGCTAGAATT	57.815	39.130	0.00	0.00	0.00	2.17
161	162	4.384647	GGAGGTTCAAGTGGATGCTAGAAT	60.385	45.833	0.00	0.00	0.00	2.40
235	236	3.000122	CCGAACAAGCAAACAACAACATG	60.000	43.478	0.00	0.00	0.00	3.21
275	276	6.856757	TCGGAGGGGAAGTAGTATAATACTT	58.143	40.000	22.04	22.04	46.23	2.24
290	291	4.018779	ACACTTAATTTGAATCGGAGGGGA	60.019	41.667	0.00	0.00	0.00	4.81
315	316	4.836175	ACCCCGGTTCAAATTCAAAACTAT	59.164	37.500	0.00	0.00	0.00	2.12
316	317	4.216708	ACCCCGGTTCAAATTCAAAACTA	58.783	39.130	0.00	0.00	0.00	2.24
317	318	3.035363	ACCCCGGTTCAAATTCAAAACT	58.965	40.909	0.00	0.00	0.00	2.66
332	333	0.876399	CGGTTTTGAACTAACCCCGG	59.124	55.000	0.00	0.00	41.62	5.73
333	334	1.264826	CACGGTTTTGAACTAACCCCG	59.735	52.381	0.00	0.00	41.62	5.73
352	353	5.026121	ACTTGTGAGATACTTCCTCCATCA	58.974	41.667	0.00	0.00	0.00	3.07
355	356	4.416516	TGACTTGTGAGATACTTCCTCCA	58.583	43.478	0.00	0.00	0.00	3.86
356	357	5.407407	TTGACTTGTGAGATACTTCCTCC	57.593	43.478	0.00	0.00	0.00	4.30
367	368	7.020010	GCAGAATATGACTTTTGACTTGTGAG	58.980	38.462	0.00	0.00	0.00	3.51
368	369	6.712095	AGCAGAATATGACTTTTGACTTGTGA	59.288	34.615	0.00	0.00	0.00	3.58
369	370	6.906659	AGCAGAATATGACTTTTGACTTGTG	58.093	36.000	0.00	0.00	0.00	3.33
370	371	6.150140	GGAGCAGAATATGACTTTTGACTTGT	59.850	38.462	0.00	0.00	0.00	3.16
371	372	6.404074	GGGAGCAGAATATGACTTTTGACTTG	60.404	42.308	0.00	0.00	0.00	3.16
372	373	5.649831	GGGAGCAGAATATGACTTTTGACTT	59.350	40.000	0.00	0.00	0.00	3.01
373	374	5.189180	GGGAGCAGAATATGACTTTTGACT	58.811	41.667	0.00	0.00	0.00	3.41
374	375	4.034510	CGGGAGCAGAATATGACTTTTGAC	59.965	45.833	0.00	0.00	0.00	3.18
375	376	4.081142	TCGGGAGCAGAATATGACTTTTGA	60.081	41.667	0.00	0.00	0.00	2.69
376	377	4.191544	TCGGGAGCAGAATATGACTTTTG	58.808	43.478	0.00	0.00	0.00	2.44
377	378	4.446371	CTCGGGAGCAGAATATGACTTTT	58.554	43.478	0.00	0.00	0.00	2.27
457	468	6.412653	GCATGCAAAACATTTCTCAAAGTTTG	59.587	34.615	14.21	9.44	36.64	2.93
467	478	5.859521	TTGGTATGCATGCAAAACATTTC	57.140	34.783	26.68	12.81	36.64	2.17
480	491	5.378292	TTCGTGCTAAATTTTGGTATGCA	57.622	34.783	0.00	0.00	0.00	3.96
481	492	6.529829	TCATTTCGTGCTAAATTTTGGTATGC	59.470	34.615	0.00	0.00	0.00	3.14
482	493	7.540400	TGTCATTTCGTGCTAAATTTTGGTATG	59.460	33.333	0.00	0.00	0.00	2.39
494	505	2.159585	CCGCAAATGTCATTTCGTGCTA	60.160	45.455	15.35	0.00	0.00	3.49
498	509	2.552315	ACTTCCGCAAATGTCATTTCGT	59.448	40.909	19.47	6.68	0.00	3.85
511	522	0.886938	TTTTCGCCATGACTTCCGCA	60.887	50.000	0.00	0.00	0.00	5.69
533	544	2.496899	ACATTTTGGACCGCTGATCT	57.503	45.000	0.00	0.00	0.00	2.75
534	545	3.575965	AAACATTTTGGACCGCTGATC	57.424	42.857	0.00	0.00	0.00	2.92
535	546	5.461032	TTAAAACATTTTGGACCGCTGAT	57.539	34.783	0.00	0.00	0.00	2.90
537	548	6.866248	ACTATTTAAAACATTTTGGACCGCTG	59.134	34.615	0.00	0.00	0.00	5.18
538	549	6.988522	ACTATTTAAAACATTTTGGACCGCT	58.011	32.000	0.00	0.00	0.00	5.52
539	550	7.008901	GCTACTATTTAAAACATTTTGGACCGC	59.991	37.037	0.00	0.00	0.00	5.68
540	551	8.024285	TGCTACTATTTAAAACATTTTGGACCG	58.976	33.333	0.00	0.00	0.00	4.79
541	552	9.869757	ATGCTACTATTTAAAACATTTTGGACC	57.130	29.630	0.00	0.00	0.00	4.46
556	567	7.408756	TGATGCTCCAAAAATGCTACTATTT	57.591	32.000	0.00	0.00	31.87	1.40
559	570	7.408756	AATTGATGCTCCAAAAATGCTACTA	57.591	32.000	0.00	0.00	0.00	1.82
561	572	6.237648	CGAAATTGATGCTCCAAAAATGCTAC	60.238	38.462	0.00	0.00	0.00	3.58
607	618	4.827304	TTTCAGCACGAAATGACATTCA	57.173	36.364	0.05	0.00	38.72	2.57
620	631	4.925054	TCTATGCTTGCAAAATTTCAGCAC	59.075	37.500	15.38	7.99	38.11	4.40
710	721	0.605319	TCCCTCATGCACGGTGAAAC	60.605	55.000	13.29	0.00	0.00	2.78
714	725	0.677731	ATGTTCCCTCATGCACGGTG	60.678	55.000	3.15	3.15	0.00	4.94
715	726	0.038166	AATGTTCCCTCATGCACGGT	59.962	50.000	0.00	0.00	0.00	4.83
716	727	1.135315	CAAATGTTCCCTCATGCACGG	60.135	52.381	0.00	0.00	0.00	4.94
717	728	1.811965	TCAAATGTTCCCTCATGCACG	59.188	47.619	0.00	0.00	0.00	5.34
730	741	1.347707	TCTGTTCCCGAGCTCAAATGT	59.652	47.619	15.40	0.00	0.00	2.71
742	753	2.418334	GGAACGTGGAGTATCTGTTCCC	60.418	54.545	10.55	0.00	46.30	3.97
746	757	2.492484	GTGAGGAACGTGGAGTATCTGT	59.508	50.000	0.00	0.00	33.73	3.41
749	760	3.056749	ACTTGTGAGGAACGTGGAGTATC	60.057	47.826	0.00	0.00	0.00	2.24
761	772	5.005740	CCATGAAGAATGAACTTGTGAGGA	58.994	41.667	0.00	0.00	38.72	3.71
797	808	7.730364	TTTTCTGAAGTAAATCTCTCGCTTT	57.270	32.000	0.00	0.00	0.00	3.51
822	833	9.753674	TGAAACCAGTTTTATCTAATCATCCTT	57.246	29.630	0.00	0.00	32.11	3.36
823	834	9.927081	ATGAAACCAGTTTTATCTAATCATCCT	57.073	29.630	0.00	0.00	32.11	3.24
831	842	8.617809	GCCGATTTATGAAACCAGTTTTATCTA	58.382	33.333	4.04	0.00	32.22	1.98
832	843	7.122055	TGCCGATTTATGAAACCAGTTTTATCT	59.878	33.333	4.04	0.00	32.22	1.98
833	844	7.254852	TGCCGATTTATGAAACCAGTTTTATC	58.745	34.615	4.04	0.70	32.22	1.75
834	845	7.164230	TGCCGATTTATGAAACCAGTTTTAT	57.836	32.000	5.92	5.92	34.00	1.40
835	846	6.576662	TGCCGATTTATGAAACCAGTTTTA	57.423	33.333	0.00	0.00	32.11	1.52
836	847	5.461032	TGCCGATTTATGAAACCAGTTTT	57.539	34.783	0.00	0.00	32.11	2.43
837	848	5.659440	ATGCCGATTTATGAAACCAGTTT	57.341	34.783	0.00	0.00	35.14	2.66
838	849	5.184864	TCAATGCCGATTTATGAAACCAGTT	59.815	36.000	0.00	0.00	0.00	3.16
839	850	4.704540	TCAATGCCGATTTATGAAACCAGT	59.295	37.500	0.00	0.00	0.00	4.00
840	851	5.247507	TCAATGCCGATTTATGAAACCAG	57.752	39.130	0.00	0.00	0.00	4.00
841	852	5.850557	ATCAATGCCGATTTATGAAACCA	57.149	34.783	0.00	0.00	0.00	3.67
842	853	8.299570	AGAATATCAATGCCGATTTATGAAACC	58.700	33.333	0.00	0.00	0.00	3.27
843	854	9.683069	AAGAATATCAATGCCGATTTATGAAAC	57.317	29.630	0.00	0.00	0.00	2.78
844	855	9.681692	CAAGAATATCAATGCCGATTTATGAAA	57.318	29.630	0.00	0.00	0.00	2.69
845	856	7.809331	GCAAGAATATCAATGCCGATTTATGAA	59.191	33.333	0.00	0.00	32.73	2.57
846	857	7.175467	AGCAAGAATATCAATGCCGATTTATGA	59.825	33.333	0.00	0.00	39.59	2.15
847	858	7.310664	AGCAAGAATATCAATGCCGATTTATG	58.689	34.615	0.00	0.00	39.59	1.90
848	859	7.458409	AGCAAGAATATCAATGCCGATTTAT	57.542	32.000	0.00	0.00	39.59	1.40
849	860	6.882610	AGCAAGAATATCAATGCCGATTTA	57.117	33.333	0.00	0.00	39.59	1.40
850	861	5.779529	AGCAAGAATATCAATGCCGATTT	57.220	34.783	0.00	0.00	39.59	2.17
851	862	5.068198	ACAAGCAAGAATATCAATGCCGATT	59.932	36.000	0.00	0.00	39.59	3.34
852	863	4.581824	ACAAGCAAGAATATCAATGCCGAT	59.418	37.500	0.00	0.00	39.59	4.18
862	873	6.968904	CGTAAGCAAATGACAAGCAAGAATAT	59.031	34.615	0.00	0.00	0.00	1.28
894	906	6.813649	TGGATCTTTTTGATGTAGAGTCTTCG	59.186	38.462	0.00	0.00	35.14	3.79
895	907	8.553459	TTGGATCTTTTTGATGTAGAGTCTTC	57.447	34.615	0.00	0.00	35.14	2.87
925	937	3.554692	CTTGCTTCTACGCGGCGG	61.555	66.667	27.37	9.93	0.00	6.13
927	939	2.815647	AGCTTGCTTCTACGCGGC	60.816	61.111	12.47	3.78	0.00	6.53
928	940	1.416813	CTCAGCTTGCTTCTACGCGG	61.417	60.000	12.47	0.00	0.00	6.46
930	942	1.714794	TTCTCAGCTTGCTTCTACGC	58.285	50.000	0.00	0.00	0.00	4.42
931	943	2.670414	CCTTTCTCAGCTTGCTTCTACG	59.330	50.000	0.00	0.00	0.00	3.51
932	944	3.006247	CCCTTTCTCAGCTTGCTTCTAC	58.994	50.000	0.00	0.00	0.00	2.59
933	945	2.616510	GCCCTTTCTCAGCTTGCTTCTA	60.617	50.000	0.00	0.00	0.00	2.10
934	946	1.885790	GCCCTTTCTCAGCTTGCTTCT	60.886	52.381	0.00	0.00	0.00	2.85
935	947	0.525311	GCCCTTTCTCAGCTTGCTTC	59.475	55.000	0.00	0.00	0.00	3.86
937	949	1.303970	GGCCCTTTCTCAGCTTGCT	60.304	57.895	0.00	0.00	0.00	3.91
938	950	1.604593	TGGCCCTTTCTCAGCTTGC	60.605	57.895	0.00	0.00	0.00	4.01
939	951	1.580845	CGTGGCCCTTTCTCAGCTTG	61.581	60.000	0.00	0.00	0.00	4.01
940	952	1.302832	CGTGGCCCTTTCTCAGCTT	60.303	57.895	0.00	0.00	0.00	3.74
941	953	2.348998	CGTGGCCCTTTCTCAGCT	59.651	61.111	0.00	0.00	0.00	4.24
943	955	2.747855	GCCGTGGCCCTTTCTCAG	60.748	66.667	0.00	0.00	34.56	3.35
988	1016	0.609662	GGTTTCGGTGGCTACAGGTA	59.390	55.000	1.52	0.00	0.00	3.08
989	1017	1.373812	GGTTTCGGTGGCTACAGGT	59.626	57.895	1.52	0.00	0.00	4.00
990	1018	0.953960	GTGGTTTCGGTGGCTACAGG	60.954	60.000	1.52	0.00	0.00	4.00
1171	1226	1.446966	GAGCAGAACGACAGGGCTC	60.447	63.158	0.00	0.00	43.41	4.70
1235	1305	1.871418	TCAGGAGAAGGGGTGAGATG	58.129	55.000	0.00	0.00	0.00	2.90
1236	1306	2.406559	CATCAGGAGAAGGGGTGAGAT	58.593	52.381	0.00	0.00	0.00	2.75
1241	1311	0.043940	AGAGCATCAGGAGAAGGGGT	59.956	55.000	0.00	0.00	37.82	4.95
1505	1578	5.064558	TCCGATAGAGGCTAGAAAGTACTG	58.935	45.833	0.00	0.00	39.76	2.74
1506	1579	5.307544	TCCGATAGAGGCTAGAAAGTACT	57.692	43.478	0.00	0.00	39.76	2.73
1507	1580	6.578163	ATTCCGATAGAGGCTAGAAAGTAC	57.422	41.667	0.00	0.00	39.76	2.73
1527	1601	7.841915	TGAAACTTTTGTCAGGGAAAAATTC	57.158	32.000	0.00	0.00	0.00	2.17
1529	1603	7.280652	CACATGAAACTTTTGTCAGGGAAAAAT	59.719	33.333	0.00	0.00	29.97	1.82
1691	1773	6.818644	TGTTAGCTAGAATCACAGGAAATCAC	59.181	38.462	0.00	0.00	0.00	3.06
1704	1786	6.631016	TCGTTCAGATTGTGTTAGCTAGAAT	58.369	36.000	0.00	0.00	0.00	2.40
1727	1809	3.656559	TGTAACAGTAAGGCCGAAACTC	58.343	45.455	0.00	0.00	0.00	3.01
1764	1862	4.314961	TGCACACATTAGATCTTTGACGT	58.685	39.130	0.00	0.00	0.00	4.34
1795	1893	4.080413	TGGTGATTATGGAGATCTGCACAA	60.080	41.667	20.09	15.21	32.58	3.33
1888	1986	2.979678	ACAGAGGTTTCATACACTGGGT	59.020	45.455	0.00	0.00	37.17	4.51
1894	1992	5.012664	TGCTTTCCTACAGAGGTTTCATACA	59.987	40.000	0.00	0.00	44.19	2.29
1958	2056	8.654997	TGTAGACCCTAATAGGTACTGTAGTAG	58.345	40.741	5.49	0.00	41.42	2.57
1985	2183	7.095910	TGAACTTCTCATTCTCAGAGACAATC	58.904	38.462	0.00	0.00	41.53	2.67
2008	2233	1.271102	GGGCAAAAGTTACGGCAATGA	59.729	47.619	0.00	0.00	0.00	2.57
2036	2261	1.135315	CCTTGCATTCGTTCGCCAG	59.865	57.895	0.00	0.00	0.00	4.85
2055	2280	2.064014	GGCACAGTACGTTTCCTGTAC	58.936	52.381	12.88	8.84	39.83	2.90
2058	2283	3.299050	TGGCACAGTACGTTTCCTG	57.701	52.632	0.00	0.02	34.82	3.86
2088	2340	8.730680	CCTGCAGACATAACAGTAACTTTTATT	58.269	33.333	17.39	0.00	0.00	1.40
2090	2342	7.446769	TCCTGCAGACATAACAGTAACTTTTA	58.553	34.615	17.39	0.00	0.00	1.52
2095	2347	5.389516	CGTTTCCTGCAGACATAACAGTAAC	60.390	44.000	17.39	5.15	0.00	2.50
2097	2349	4.242475	CGTTTCCTGCAGACATAACAGTA	58.758	43.478	17.39	0.00	0.00	2.74
2098	2350	3.067106	CGTTTCCTGCAGACATAACAGT	58.933	45.455	17.39	0.00	0.00	3.55
2099	2351	3.067106	ACGTTTCCTGCAGACATAACAG	58.933	45.455	17.39	11.29	0.00	3.16
2100	2352	3.120321	ACGTTTCCTGCAGACATAACA	57.880	42.857	17.39	0.00	0.00	2.41
2101	2353	3.060363	CGTACGTTTCCTGCAGACATAAC	59.940	47.826	17.39	11.93	0.00	1.89
2255	2512	4.101942	GTTCAAGCACTCGAGTAGATGAG	58.898	47.826	19.57	5.81	38.21	2.90
2265	2522	2.430546	ACTCTCAGTTCAAGCACTCG	57.569	50.000	0.00	0.00	0.00	4.18
2331	2588	6.349944	GGATTGATGATGATATTTGTGGCCTC	60.350	42.308	3.32	0.00	0.00	4.70
2477	2734	0.170561	GCACCTTCAGAGCTGCAATG	59.829	55.000	1.02	0.00	35.10	2.82
2521	2778	7.370383	TGCTGATGTCTTTTCCTGAAAAATAC	58.630	34.615	6.53	8.04	39.49	1.89
2653	2921	1.736126	CGTTCAGCAGCATGTTCTCAT	59.264	47.619	0.00	0.00	39.31	2.90
2741	3009	4.807834	TCTTCTGATGATTTGTCGATGCTC	59.192	41.667	0.00	0.00	0.00	4.26
2753	3021	4.525024	CAGGCTTTTCCTCTTCTGATGAT	58.475	43.478	0.00	0.00	45.52	2.45
2754	3022	3.307975	CCAGGCTTTTCCTCTTCTGATGA	60.308	47.826	0.00	0.00	45.52	2.92
2755	3023	3.015327	CCAGGCTTTTCCTCTTCTGATG	58.985	50.000	0.00	0.00	45.52	3.07
2813	3081	5.453266	CAGTATATTTGCAGCAACAATGTCG	59.547	40.000	7.54	0.00	0.00	4.35
2897	3165	5.185454	CACAATATCCCTGAAACAGCTACA	58.815	41.667	0.00	0.00	0.00	2.74
2900	3168	4.012374	CACACAATATCCCTGAAACAGCT	58.988	43.478	0.00	0.00	0.00	4.24
2967	3235	7.736447	AGTAACCAAGAAATGAAACTCTGAG	57.264	36.000	2.45	2.45	0.00	3.35
2977	3245	7.856145	AGAGAAGCATAGTAACCAAGAAATG	57.144	36.000	0.00	0.00	0.00	2.32
2978	3246	7.337942	CCAAGAGAAGCATAGTAACCAAGAAAT	59.662	37.037	0.00	0.00	0.00	2.17
2991	3259	4.737855	GTGAGGTACCAAGAGAAGCATA	57.262	45.455	15.94	0.00	0.00	3.14
3026	3294	3.551046	CGATCTTCGGAACCTGTATCAGG	60.551	52.174	13.43	13.43	45.65	3.86
3029	3297	3.984508	TCGATCTTCGGAACCTGTATC	57.015	47.619	0.00	0.00	40.88	2.24
3033	3301	2.673368	CCTTTTCGATCTTCGGAACCTG	59.327	50.000	0.00	0.00	37.05	4.00
3131	3399	9.248291	TGTGAGAAGAAAAATGCAAAAATCTAC	57.752	29.630	0.00	0.00	0.00	2.59
3139	3407	6.571605	TCACAATGTGAGAAGAAAAATGCAA	58.428	32.000	12.63	0.00	37.67	4.08
3148	3416	3.071457	TCTGCCTTCACAATGTGAGAAGA	59.929	43.478	16.10	12.01	44.33	2.87
3149	3417	3.405831	TCTGCCTTCACAATGTGAGAAG	58.594	45.455	16.10	11.60	43.69	2.85
3152	3420	3.754850	TCAATCTGCCTTCACAATGTGAG	59.245	43.478	16.10	7.19	43.69	3.51
3162	3441	4.396478	GGAAAGTAAGGTCAATCTGCCTTC	59.604	45.833	0.00	0.00	43.40	3.46
3180	3459	0.247736	CCTCTCACCAGTCGGGAAAG	59.752	60.000	0.00	0.00	41.15	2.62
3272	3551	3.188254	TCAAAACATATGCGTCACACCAG	59.812	43.478	1.58	0.00	0.00	4.00
3275	3554	3.435327	TCCTCAAAACATATGCGTCACAC	59.565	43.478	1.58	0.00	0.00	3.82
3276	3555	3.435327	GTCCTCAAAACATATGCGTCACA	59.565	43.478	1.58	0.00	0.00	3.58
3278	3557	3.669536	TGTCCTCAAAACATATGCGTCA	58.330	40.909	1.58	0.00	0.00	4.35
3285	3564	9.476202	CGTCTTATCATATGTCCTCAAAACATA	57.524	33.333	1.90	0.00	42.20	2.29
3286	3565	8.204160	TCGTCTTATCATATGTCCTCAAAACAT	58.796	33.333	1.90	0.00	40.37	2.71
3287	3566	7.552459	TCGTCTTATCATATGTCCTCAAAACA	58.448	34.615	1.90	0.00	0.00	2.83
3288	3567	8.491152	CATCGTCTTATCATATGTCCTCAAAAC	58.509	37.037	1.90	0.00	0.00	2.43
3290	3569	7.653311	CACATCGTCTTATCATATGTCCTCAAA	59.347	37.037	1.90	0.00	0.00	2.69
3291	3570	7.014230	TCACATCGTCTTATCATATGTCCTCAA	59.986	37.037	1.90	0.00	0.00	3.02
3293	3572	6.914259	TCACATCGTCTTATCATATGTCCTC	58.086	40.000	1.90	0.00	0.00	3.71
3294	3573	6.901081	TCACATCGTCTTATCATATGTCCT	57.099	37.500	1.90	0.00	0.00	3.85
3295	3574	7.093354	ACATCACATCGTCTTATCATATGTCC	58.907	38.462	1.90	0.00	0.00	4.02
3296	3575	8.526218	AACATCACATCGTCTTATCATATGTC	57.474	34.615	1.90	0.00	0.00	3.06
3297	3576	8.893219	AAACATCACATCGTCTTATCATATGT	57.107	30.769	1.90	0.00	0.00	2.29
3299	3578	9.129209	CGTAAACATCACATCGTCTTATCATAT	57.871	33.333	0.00	0.00	0.00	1.78
3310	3702	1.999735	AGCACCGTAAACATCACATCG	59.000	47.619	0.00	0.00	0.00	3.84
3313	3705	4.212425	CACTTAAGCACCGTAAACATCACA	59.788	41.667	1.29	0.00	0.00	3.58
3317	3709	2.158841	CGCACTTAAGCACCGTAAACAT	59.841	45.455	1.29	0.00	0.00	2.71
3322	3714	2.373540	ATTCGCACTTAAGCACCGTA	57.626	45.000	1.29	0.00	0.00	4.02
3325	3717	2.006888	TGCTATTCGCACTTAAGCACC	58.993	47.619	1.29	0.00	45.47	5.01
3338	3730	6.646240	ACAAAACATTTGTCCATGTGCTATTC	59.354	34.615	2.76	0.00	37.46	1.75
3352	3744	5.238868	TGATGGGCATGAAACAAAACATTTG	59.761	36.000	0.00	1.47	0.00	2.32
3353	3745	5.374921	TGATGGGCATGAAACAAAACATTT	58.625	33.333	0.00	0.00	0.00	2.32
3354	3746	4.970711	TGATGGGCATGAAACAAAACATT	58.029	34.783	0.00	0.00	0.00	2.71
3355	3747	4.620589	TGATGGGCATGAAACAAAACAT	57.379	36.364	0.00	0.00	0.00	2.71
3356	3748	4.620589	ATGATGGGCATGAAACAAAACA	57.379	36.364	0.00	0.00	35.42	2.83
3358	3750	6.956202	AAAAATGATGGGCATGAAACAAAA	57.044	29.167	0.00	0.00	37.28	2.44
3367	3807	8.660295	ATCATAGTGATAAAAATGATGGGCAT	57.340	30.769	0.00	0.00	37.61	4.40
3371	3811	8.939929	ACGCTATCATAGTGATAAAAATGATGG	58.060	33.333	12.37	5.33	38.72	3.51
3389	3829	3.261580	CACACATTTCCTCACGCTATCA	58.738	45.455	0.00	0.00	0.00	2.15
3441	3881	3.874383	TCAATCTGGGTTTGTCCTCAA	57.126	42.857	0.00	0.00	36.25	3.02
3481	3922	6.128445	CGACATGTTTTCTGATTCAGTTAGCT	60.128	38.462	13.23	0.00	32.61	3.32
3483	3924	7.351414	TCGACATGTTTTCTGATTCAGTTAG	57.649	36.000	13.23	1.70	32.61	2.34
3487	3928	4.093998	CCCTCGACATGTTTTCTGATTCAG	59.906	45.833	7.38	7.38	0.00	3.02
3508	3949	3.067833	GTCTGCAGTTAGTCTGAAACCC	58.932	50.000	14.67	0.00	46.27	4.11
3569	4010	9.591792	TGTACTAACTGAAATGATGATCTTCTG	57.408	33.333	9.75	4.11	0.00	3.02
3581	4022	9.284968	AGCAATACAAGTTGTACTAACTGAAAT	57.715	29.630	17.79	0.00	35.42	2.17
3625	4066	7.905265	CAGATAGTGGACATATCTTCAGGAAT	58.095	38.462	0.00	0.00	37.79	3.01
3735	4176	3.689347	TCTCTAATGCATGCACAGGTTT	58.311	40.909	25.37	15.59	0.00	3.27
3736	4177	3.354948	TCTCTAATGCATGCACAGGTT	57.645	42.857	25.37	15.99	0.00	3.50
3738	4179	5.303165	TCTAATCTCTAATGCATGCACAGG	58.697	41.667	25.37	15.33	0.00	4.00
3741	4182	7.412781	GCATACTCTAATCTCTAATGCATGCAC	60.413	40.741	25.37	0.00	38.44	4.57
3742	4183	6.592994	GCATACTCTAATCTCTAATGCATGCA	59.407	38.462	25.04	25.04	38.44	3.96
3743	4184	6.817641	AGCATACTCTAATCTCTAATGCATGC	59.182	38.462	11.82	11.82	40.45	4.06
3744	4185	8.774890	AAGCATACTCTAATCTCTAATGCATG	57.225	34.615	0.00	0.00	40.45	4.06
3745	4186	9.217278	CAAAGCATACTCTAATCTCTAATGCAT	57.783	33.333	0.00	0.00	40.45	3.96
3746	4187	8.424133	TCAAAGCATACTCTAATCTCTAATGCA	58.576	33.333	7.10	0.00	40.45	3.96
3747	4188	8.824159	TCAAAGCATACTCTAATCTCTAATGC	57.176	34.615	0.00	0.00	38.76	3.56
3750	4191	7.928706	GCCTTCAAAGCATACTCTAATCTCTAA	59.071	37.037	0.00	0.00	0.00	2.10
3751	4192	7.437748	GCCTTCAAAGCATACTCTAATCTCTA	58.562	38.462	0.00	0.00	0.00	2.43
3752	4193	6.287525	GCCTTCAAAGCATACTCTAATCTCT	58.712	40.000	0.00	0.00	0.00	3.10
3754	4195	5.131809	AGGCCTTCAAAGCATACTCTAATCT	59.868	40.000	0.00	0.00	0.00	2.40
3755	4196	5.372373	AGGCCTTCAAAGCATACTCTAATC	58.628	41.667	0.00	0.00	0.00	1.75
3756	4197	5.379706	AGGCCTTCAAAGCATACTCTAAT	57.620	39.130	0.00	0.00	0.00	1.73
3757	4198	4.844349	AGGCCTTCAAAGCATACTCTAA	57.156	40.909	0.00	0.00	0.00	2.10
3758	4199	4.680708	CGAAGGCCTTCAAAGCATACTCTA	60.681	45.833	37.88	0.00	39.46	2.43
3759	4200	3.615155	GAAGGCCTTCAAAGCATACTCT	58.385	45.455	35.71	1.51	39.31	3.24
3780	4242	4.854399	TGAAAGTTCTACACAATTTGGCG	58.146	39.130	0.78	0.00	0.00	5.69
3815	4286	3.684788	GCTCTAATTCGGCAAAGTTCAGA	59.315	43.478	0.00	0.00	0.00	3.27
3824	4295	1.153168	GGCAGGCTCTAATTCGGCA	60.153	57.895	0.00	0.00	0.00	5.69
3828	4299	3.448660	ACCAAAATGGCAGGCTCTAATTC	59.551	43.478	0.00	0.00	42.67	2.17
3858	4329	9.807921	AGAATGAAAAACTAAGGATTCAGGTAA	57.192	29.630	0.00	0.00	35.47	2.85
3863	4334	9.981114	GGAAAAGAATGAAAAACTAAGGATTCA	57.019	29.630	0.00	0.00	36.35	2.57
3907	4379	7.836479	AATGGATAGTACTAGTACCCTGAAC	57.164	40.000	25.97	13.95	36.75	3.18
4033	4505	2.365617	TCGGAGTTCTCAAAGTTGCTCT	59.634	45.455	2.24	0.00	0.00	4.09
4037	4509	5.485662	AAGTTTCGGAGTTCTCAAAGTTG	57.514	39.130	2.24	0.00	0.00	3.16
4066	4538	3.009115	CCCCTGGGAAGAGCGGAA	61.009	66.667	16.20	0.00	37.50	4.30
4084	4556	3.987745	TCTCTCCCATTTCTCAGTAGCT	58.012	45.455	0.00	0.00	0.00	3.32
4253	4725	8.271487	GTGCTTGTTCAAATCATCTTCTTTTTC	58.729	33.333	0.00	0.00	0.00	2.29
4323	4795	4.631813	AGCACAATACCTCGTCTGAATTTC	59.368	41.667	0.00	0.00	0.00	2.17
4397	4869	1.134907	CCCAACATGCTCATTTCCAGC	60.135	52.381	0.00	0.00	37.40	4.85
4398	4870	1.134907	GCCCAACATGCTCATTTCCAG	60.135	52.381	0.00	0.00	0.00	3.86
4405	4877	1.818959	GCAAAGGCCCAACATGCTCA	61.819	55.000	0.00	0.00	34.29	4.26
4409	4881	1.838112	TCTAGCAAAGGCCCAACATG	58.162	50.000	0.00	0.00	42.56	3.21

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.