Multiple sequence alignment - TraesCS1B01G326900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G326900 chr1B 100.000 2674 0 0 1 2674 553137178 553134505 0.000000e+00 4939.0
1 TraesCS1B01G326900 chr1B 88.292 1042 82 22 726 1747 553025522 553024501 0.000000e+00 1212.0
2 TraesCS1B01G326900 chr1A 92.528 1258 78 8 641 1888 506494028 506492777 0.000000e+00 1788.0
3 TraesCS1B01G326900 chr1A 92.155 1211 70 11 711 1912 506474471 506473277 0.000000e+00 1687.0
4 TraesCS1B01G326900 chr1A 89.440 1250 80 31 700 1917 506489631 506488402 0.000000e+00 1530.0
5 TraesCS1B01G326900 chr1A 94.231 780 45 0 1047 1826 506481145 506480366 0.000000e+00 1192.0
6 TraesCS1B01G326900 chr1A 85.014 1041 96 32 726 1747 506309134 506308135 0.000000e+00 1003.0
7 TraesCS1B01G326900 chr1A 82.110 436 46 19 726 1154 506294534 506294124 7.090000e-91 344.0
8 TraesCS1B01G326900 chr1A 79.614 363 59 7 1904 2253 506471332 506470972 2.060000e-61 246.0
9 TraesCS1B01G326900 chr1A 85.870 92 11 2 1826 1917 506478623 506478534 2.190000e-16 97.1
10 TraesCS1B01G326900 chr1D 89.206 1436 111 18 700 2117 410491401 410489992 0.000000e+00 1753.0
11 TraesCS1B01G326900 chr1D 85.579 1685 177 37 861 2503 410483031 410481371 0.000000e+00 1705.0
12 TraesCS1B01G326900 chr1D 87.826 1035 90 21 726 1747 410472534 410471523 0.000000e+00 1181.0
13 TraesCS1B01G326900 chr1D 82.846 513 67 11 2169 2674 410489986 410489488 8.790000e-120 440.0
14 TraesCS1B01G326900 chr1D 90.654 107 7 3 1 105 410492238 410492133 3.590000e-29 139.0
15 TraesCS1B01G326900 chr4B 78.089 429 71 14 2251 2674 575761576 575761166 1.590000e-62 250.0
16 TraesCS1B01G326900 chr7D 80.660 212 30 6 2465 2674 123741055 123740853 1.280000e-33 154.0
17 TraesCS1B01G326900 chr7B 86.131 137 16 3 2540 2674 707608118 707607983 7.720000e-31 145.0
18 TraesCS1B01G326900 chr5D 80.645 186 24 8 2495 2674 476756143 476755964 1.670000e-27 134.0
19 TraesCS1B01G326900 chr5D 79.188 197 28 10 2483 2674 546657803 546657991 1.010000e-24 124.0
20 TraesCS1B01G326900 chr5D 86.667 75 8 2 1928 2002 421642484 421642412 6.140000e-12 82.4
21 TraesCS1B01G326900 chr3B 83.333 138 18 5 2541 2674 487438664 487438800 3.620000e-24 122.0
22 TraesCS1B01G326900 chr3B 78.378 185 19 14 2493 2674 51906643 51906477 1.690000e-17 100.0
23 TraesCS1B01G326900 chr3A 80.723 166 22 6 2514 2674 928388 928548 1.300000e-23 121.0
24 TraesCS1B01G326900 chr3A 85.000 80 9 3 1924 2002 743669998 743670075 7.940000e-11 78.7
25 TraesCS1B01G326900 chr3D 81.061 132 18 6 236 364 113458500 113458627 6.090000e-17 99.0
26 TraesCS1B01G326900 chr3D 87.838 74 7 2 1929 2002 525918726 525918797 4.740000e-13 86.1
27 TraesCS1B01G326900 chr2B 88.750 80 9 0 2074 2153 547919198 547919277 6.090000e-17 99.0
28 TraesCS1B01G326900 chr2B 86.667 75 8 2 1928 2002 508317373 508317301 6.140000e-12 82.4
29 TraesCS1B01G326900 chr7A 77.838 185 20 13 2493 2674 27051790 27051956 7.880000e-16 95.3
30 TraesCS1B01G326900 chr6A 74.370 238 48 8 1927 2155 48707558 48707791 3.670000e-14 89.8
31 TraesCS1B01G326900 chr2D 88.000 75 7 2 1928 2002 417546504 417546576 1.320000e-13 87.9
32 TraesCS1B01G326900 chr5B 85.897 78 9 2 1925 2002 466559377 466559452 6.140000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G326900 chr1B 553134505 553137178 2673 True 4939.000000 4939 100.000000 1 2674 1 chr1B.!!$R2 2673
1 TraesCS1B01G326900 chr1B 553024501 553025522 1021 True 1212.000000 1212 88.292000 726 1747 1 chr1B.!!$R1 1021
2 TraesCS1B01G326900 chr1A 506488402 506494028 5626 True 1659.000000 1788 90.984000 641 1917 2 chr1A.!!$R5 1276
3 TraesCS1B01G326900 chr1A 506308135 506309134 999 True 1003.000000 1003 85.014000 726 1747 1 chr1A.!!$R2 1021
4 TraesCS1B01G326900 chr1A 506470972 506474471 3499 True 966.500000 1687 85.884500 711 2253 2 chr1A.!!$R3 1542
5 TraesCS1B01G326900 chr1A 506478534 506481145 2611 True 644.550000 1192 90.050500 1047 1917 2 chr1A.!!$R4 870
6 TraesCS1B01G326900 chr1D 410481371 410483031 1660 True 1705.000000 1705 85.579000 861 2503 1 chr1D.!!$R2 1642
7 TraesCS1B01G326900 chr1D 410471523 410472534 1011 True 1181.000000 1181 87.826000 726 1747 1 chr1D.!!$R1 1021
8 TraesCS1B01G326900 chr1D 410489488 410492238 2750 True 777.333333 1753 87.568667 1 2674 3 chr1D.!!$R3 2673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 874 0.033642 TTTGGTACGGACATCGCACA 59.966 50.0 0.0 0.0 43.89 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 6629 0.179234 TGTGCGTTCAGTGGGAGAAA 59.821 50.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.264947 TCATCAGAATCTTGCCGAAGTG 58.735 45.455 0.00 0.00 0.00 3.16
59 60 1.089920 CAGAATCTTGCCGAAGTGGG 58.910 55.000 0.00 0.00 38.63 4.61
95 98 3.322466 CGGAGTGGGACTGGGCTT 61.322 66.667 0.00 0.00 0.00 4.35
105 108 4.408821 CTGGGCTTGTAGGCGGCA 62.409 66.667 13.08 0.00 42.43 5.69
106 109 3.704231 CTGGGCTTGTAGGCGGCAT 62.704 63.158 13.08 0.00 42.43 4.40
107 110 3.211963 GGGCTTGTAGGCGGCATG 61.212 66.667 13.08 0.00 42.43 4.06
108 111 2.438434 GGCTTGTAGGCGGCATGT 60.438 61.111 13.08 0.00 0.00 3.21
109 112 2.046285 GGCTTGTAGGCGGCATGTT 61.046 57.895 13.08 0.00 0.00 2.71
110 113 1.137404 GCTTGTAGGCGGCATGTTG 59.863 57.895 13.08 0.00 0.00 3.33
111 114 1.137404 CTTGTAGGCGGCATGTTGC 59.863 57.895 13.08 0.00 44.08 4.17
120 123 4.047059 GCATGTTGCACGGCTGCT 62.047 61.111 0.00 0.00 44.26 4.24
122 125 3.425713 ATGTTGCACGGCTGCTCG 61.426 61.111 0.00 4.21 44.57 5.03
124 127 3.782244 GTTGCACGGCTGCTCGAG 61.782 66.667 8.45 8.45 44.57 4.04
139 142 2.434843 CGAGTGGCCATGGGAGCTA 61.435 63.158 9.72 0.00 0.00 3.32
140 143 1.915228 GAGTGGCCATGGGAGCTAA 59.085 57.895 9.72 0.00 0.00 3.09
141 144 0.179034 GAGTGGCCATGGGAGCTAAG 60.179 60.000 9.72 0.00 0.00 2.18
142 145 0.621571 AGTGGCCATGGGAGCTAAGA 60.622 55.000 9.72 0.00 0.00 2.10
144 147 0.255890 TGGCCATGGGAGCTAAGAAC 59.744 55.000 15.13 0.00 0.00 3.01
145 148 0.548510 GGCCATGGGAGCTAAGAACT 59.451 55.000 15.13 0.00 0.00 3.01
146 149 1.768870 GGCCATGGGAGCTAAGAACTA 59.231 52.381 15.13 0.00 0.00 2.24
147 150 2.172717 GGCCATGGGAGCTAAGAACTAA 59.827 50.000 15.13 0.00 0.00 2.24
148 151 3.371595 GGCCATGGGAGCTAAGAACTAAA 60.372 47.826 15.13 0.00 0.00 1.85
149 152 4.464947 GCCATGGGAGCTAAGAACTAAAT 58.535 43.478 15.13 0.00 0.00 1.40
150 153 4.276926 GCCATGGGAGCTAAGAACTAAATG 59.723 45.833 15.13 0.00 0.00 2.32
151 154 5.684704 CCATGGGAGCTAAGAACTAAATGA 58.315 41.667 2.85 0.00 0.00 2.57
152 155 6.122277 CCATGGGAGCTAAGAACTAAATGAA 58.878 40.000 2.85 0.00 0.00 2.57
153 156 6.603201 CCATGGGAGCTAAGAACTAAATGAAA 59.397 38.462 2.85 0.00 0.00 2.69
154 157 7.415653 CCATGGGAGCTAAGAACTAAATGAAAC 60.416 40.741 2.85 0.00 0.00 2.78
155 158 5.944007 TGGGAGCTAAGAACTAAATGAAACC 59.056 40.000 0.00 0.00 0.00 3.27
156 159 5.944007 GGGAGCTAAGAACTAAATGAAACCA 59.056 40.000 0.00 0.00 0.00 3.67
157 160 6.094186 GGGAGCTAAGAACTAAATGAAACCAG 59.906 42.308 0.00 0.00 0.00 4.00
158 161 6.879458 GGAGCTAAGAACTAAATGAAACCAGA 59.121 38.462 0.00 0.00 0.00 3.86
159 162 7.390718 GGAGCTAAGAACTAAATGAAACCAGAA 59.609 37.037 0.00 0.00 0.00 3.02
160 163 8.691661 AGCTAAGAACTAAATGAAACCAGAAA 57.308 30.769 0.00 0.00 0.00 2.52
161 164 9.301897 AGCTAAGAACTAAATGAAACCAGAAAT 57.698 29.630 0.00 0.00 0.00 2.17
162 165 9.346725 GCTAAGAACTAAATGAAACCAGAAATG 57.653 33.333 0.00 0.00 0.00 2.32
163 166 9.846248 CTAAGAACTAAATGAAACCAGAAATGG 57.154 33.333 0.00 0.00 0.00 3.16
164 167 7.232118 AGAACTAAATGAAACCAGAAATGGG 57.768 36.000 0.00 0.00 0.00 4.00
165 168 5.405935 ACTAAATGAAACCAGAAATGGGC 57.594 39.130 0.00 0.00 0.00 5.36
166 169 5.086621 ACTAAATGAAACCAGAAATGGGCT 58.913 37.500 0.00 0.00 0.00 5.19
167 170 6.252995 ACTAAATGAAACCAGAAATGGGCTA 58.747 36.000 0.00 0.00 0.00 3.93
168 171 5.665916 AAATGAAACCAGAAATGGGCTAG 57.334 39.130 0.00 0.00 0.00 3.42
169 172 3.806949 TGAAACCAGAAATGGGCTAGT 57.193 42.857 0.00 0.00 0.00 2.57
170 173 4.112634 TGAAACCAGAAATGGGCTAGTT 57.887 40.909 0.00 0.00 0.00 2.24
171 174 5.249780 TGAAACCAGAAATGGGCTAGTTA 57.750 39.130 0.00 0.00 0.00 2.24
172 175 5.253330 TGAAACCAGAAATGGGCTAGTTAG 58.747 41.667 0.00 0.00 0.00 2.34
173 176 3.933861 ACCAGAAATGGGCTAGTTAGG 57.066 47.619 0.00 1.45 0.00 2.69
174 177 2.092375 ACCAGAAATGGGCTAGTTAGGC 60.092 50.000 4.26 4.26 47.00 3.93
184 187 3.597255 GGCTAGTTAGGCGATAATTCCC 58.403 50.000 0.00 0.00 39.15 3.97
185 188 3.597255 GCTAGTTAGGCGATAATTCCCC 58.403 50.000 0.00 0.00 0.00 4.81
186 189 3.007614 GCTAGTTAGGCGATAATTCCCCA 59.992 47.826 0.00 0.00 0.00 4.96
187 190 4.323562 GCTAGTTAGGCGATAATTCCCCAT 60.324 45.833 0.00 0.00 0.00 4.00
188 191 4.287766 AGTTAGGCGATAATTCCCCATC 57.712 45.455 0.00 0.00 0.00 3.51
189 192 3.650942 AGTTAGGCGATAATTCCCCATCA 59.349 43.478 0.00 0.00 0.00 3.07
190 193 4.104102 AGTTAGGCGATAATTCCCCATCAA 59.896 41.667 0.00 0.00 0.00 2.57
191 194 3.593442 AGGCGATAATTCCCCATCAAA 57.407 42.857 0.00 0.00 0.00 2.69
192 195 3.909732 AGGCGATAATTCCCCATCAAAA 58.090 40.909 0.00 0.00 0.00 2.44
193 196 3.891366 AGGCGATAATTCCCCATCAAAAG 59.109 43.478 0.00 0.00 0.00 2.27
194 197 3.005791 GGCGATAATTCCCCATCAAAAGG 59.994 47.826 0.00 0.00 0.00 3.11
195 198 3.636764 GCGATAATTCCCCATCAAAAGGT 59.363 43.478 0.00 0.00 0.00 3.50
196 199 4.099419 GCGATAATTCCCCATCAAAAGGTT 59.901 41.667 0.00 0.00 0.00 3.50
197 200 5.395214 GCGATAATTCCCCATCAAAAGGTTT 60.395 40.000 0.00 0.00 0.00 3.27
198 201 6.639563 CGATAATTCCCCATCAAAAGGTTTT 58.360 36.000 0.00 0.00 0.00 2.43
199 202 6.756542 CGATAATTCCCCATCAAAAGGTTTTC 59.243 38.462 0.00 0.00 0.00 2.29
200 203 4.908601 ATTCCCCATCAAAAGGTTTTCC 57.091 40.909 0.00 0.00 41.05 3.13
201 204 2.615391 TCCCCATCAAAAGGTTTTCCC 58.385 47.619 0.00 0.00 41.86 3.97
203 206 2.567169 CCCCATCAAAAGGTTTTCCCTC 59.433 50.000 0.00 0.00 45.47 4.30
204 207 3.238597 CCCATCAAAAGGTTTTCCCTCA 58.761 45.455 0.00 0.00 45.47 3.86
205 208 3.840078 CCCATCAAAAGGTTTTCCCTCAT 59.160 43.478 0.00 0.00 45.47 2.90
206 209 5.022787 CCCATCAAAAGGTTTTCCCTCATA 58.977 41.667 0.00 0.00 45.47 2.15
207 210 5.662657 CCCATCAAAAGGTTTTCCCTCATAT 59.337 40.000 0.00 0.00 45.47 1.78
208 211 6.156775 CCCATCAAAAGGTTTTCCCTCATATT 59.843 38.462 0.00 0.00 45.47 1.28
209 212 7.344352 CCCATCAAAAGGTTTTCCCTCATATTA 59.656 37.037 0.00 0.00 45.47 0.98
210 213 8.757877 CCATCAAAAGGTTTTCCCTCATATTAA 58.242 33.333 0.00 0.00 45.47 1.40
216 219 9.772973 AAAGGTTTTCCCTCATATTAAAAACAC 57.227 29.630 10.17 2.15 45.47 3.32
217 220 8.721133 AGGTTTTCCCTCATATTAAAAACACT 57.279 30.769 10.17 3.90 40.71 3.55
218 221 9.816787 AGGTTTTCCCTCATATTAAAAACACTA 57.183 29.630 10.17 0.00 40.71 2.74
224 227 9.886132 TCCCTCATATTAAAAACACTAAGAGTC 57.114 33.333 0.00 0.00 0.00 3.36
225 228 8.818057 CCCTCATATTAAAAACACTAAGAGTCG 58.182 37.037 0.00 0.00 0.00 4.18
226 229 9.582431 CCTCATATTAAAAACACTAAGAGTCGA 57.418 33.333 0.00 0.00 0.00 4.20
231 234 4.710528 AAAACACTAAGAGTCGAAAGCG 57.289 40.909 0.00 0.00 39.35 4.68
232 235 2.349297 ACACTAAGAGTCGAAAGCGG 57.651 50.000 0.00 0.00 38.28 5.52
233 236 1.067776 ACACTAAGAGTCGAAAGCGGG 60.068 52.381 0.00 0.00 38.28 6.13
234 237 0.531200 ACTAAGAGTCGAAAGCGGGG 59.469 55.000 0.00 0.00 38.28 5.73
235 238 0.531200 CTAAGAGTCGAAAGCGGGGT 59.469 55.000 0.00 0.00 38.28 4.95
236 239 0.971386 TAAGAGTCGAAAGCGGGGTT 59.029 50.000 0.00 0.00 38.28 4.11
237 240 0.108019 AAGAGTCGAAAGCGGGGTTT 59.892 50.000 0.00 0.00 38.28 3.27
238 241 0.108019 AGAGTCGAAAGCGGGGTTTT 59.892 50.000 0.00 0.00 38.28 2.43
239 242 0.237498 GAGTCGAAAGCGGGGTTTTG 59.763 55.000 4.57 4.57 38.28 2.44
240 243 1.170290 AGTCGAAAGCGGGGTTTTGG 61.170 55.000 9.91 1.29 38.28 3.28
241 244 2.049526 CGAAAGCGGGGTTTTGGC 60.050 61.111 3.24 0.00 0.00 4.52
242 245 2.561037 CGAAAGCGGGGTTTTGGCT 61.561 57.895 3.24 0.00 39.01 4.75
248 251 2.989253 GGGGTTTTGGCTCCCGTG 60.989 66.667 0.00 0.00 44.27 4.94
253 256 0.521735 GTTTTGGCTCCCGTGCTTAG 59.478 55.000 0.00 0.00 0.00 2.18
259 262 0.878086 GCTCCCGTGCTTAGATGAGC 60.878 60.000 0.00 0.00 43.00 4.26
262 265 1.040646 CCCGTGCTTAGATGAGCCTA 58.959 55.000 0.00 0.00 42.01 3.93
263 266 1.620819 CCCGTGCTTAGATGAGCCTAT 59.379 52.381 0.00 0.00 42.01 2.57
264 267 2.611473 CCCGTGCTTAGATGAGCCTATG 60.611 54.545 0.00 0.00 42.01 2.23
266 269 2.546584 CGTGCTTAGATGAGCCTATGCA 60.547 50.000 0.00 0.00 43.20 3.96
267 270 3.672808 GTGCTTAGATGAGCCTATGCAT 58.327 45.455 3.79 3.79 45.33 3.96
269 272 5.240891 GTGCTTAGATGAGCCTATGCATTA 58.759 41.667 3.54 0.00 45.33 1.90
271 274 5.221702 TGCTTAGATGAGCCTATGCATTACA 60.222 40.000 3.54 0.00 41.69 2.41
272 275 5.350914 GCTTAGATGAGCCTATGCATTACAG 59.649 44.000 3.54 0.00 41.13 2.74
273 276 4.970860 AGATGAGCCTATGCATTACAGT 57.029 40.909 3.54 0.00 41.13 3.55
275 278 6.425210 AGATGAGCCTATGCATTACAGTAA 57.575 37.500 3.54 0.00 41.13 2.24
276 279 6.830912 AGATGAGCCTATGCATTACAGTAAA 58.169 36.000 3.54 0.00 41.13 2.01
278 281 7.941238 AGATGAGCCTATGCATTACAGTAAAAT 59.059 33.333 3.54 0.00 41.13 1.82
279 282 7.496529 TGAGCCTATGCATTACAGTAAAATC 57.503 36.000 3.54 0.00 41.13 2.17
280 283 7.053498 TGAGCCTATGCATTACAGTAAAATCA 58.947 34.615 3.54 0.00 41.13 2.57
281 284 7.720957 TGAGCCTATGCATTACAGTAAAATCAT 59.279 33.333 3.54 4.28 41.13 2.45
283 286 9.573166 AGCCTATGCATTACAGTAAAATCATTA 57.427 29.630 3.54 0.00 41.13 1.90
342 345 6.463995 TTTTGTGGTGAAAGATGCTTAAGT 57.536 33.333 4.02 0.00 0.00 2.24
343 346 5.437289 TTGTGGTGAAAGATGCTTAAGTG 57.563 39.130 4.02 0.00 0.00 3.16
344 347 3.253188 TGTGGTGAAAGATGCTTAAGTGC 59.747 43.478 4.02 0.00 0.00 4.40
345 348 2.483877 TGGTGAAAGATGCTTAAGTGCG 59.516 45.455 4.02 0.00 35.36 5.34
346 349 2.484264 GGTGAAAGATGCTTAAGTGCGT 59.516 45.455 4.02 0.00 35.36 5.24
347 350 3.482786 GTGAAAGATGCTTAAGTGCGTG 58.517 45.455 4.02 0.00 35.36 5.34
348 351 3.186409 GTGAAAGATGCTTAAGTGCGTGA 59.814 43.478 4.02 0.00 35.36 4.35
349 352 4.002982 TGAAAGATGCTTAAGTGCGTGAT 58.997 39.130 4.02 0.00 35.36 3.06
350 353 4.142838 TGAAAGATGCTTAAGTGCGTGATG 60.143 41.667 4.02 0.00 35.36 3.07
351 354 2.977914 AGATGCTTAAGTGCGTGATGT 58.022 42.857 4.02 0.00 35.36 3.06
352 355 3.338249 AGATGCTTAAGTGCGTGATGTT 58.662 40.909 4.02 0.00 35.36 2.71
353 356 3.372206 AGATGCTTAAGTGCGTGATGTTC 59.628 43.478 4.02 0.00 35.36 3.18
354 357 1.459209 TGCTTAAGTGCGTGATGTTCG 59.541 47.619 4.02 0.00 35.36 3.95
355 358 1.459592 GCTTAAGTGCGTGATGTTCGT 59.540 47.619 4.02 0.00 0.00 3.85
356 359 2.721797 GCTTAAGTGCGTGATGTTCGTG 60.722 50.000 4.02 0.00 0.00 4.35
357 360 0.787787 TAAGTGCGTGATGTTCGTGC 59.212 50.000 0.00 0.00 0.00 5.34
361 716 1.281353 GCGTGATGTTCGTGCCAAA 59.719 52.632 0.00 0.00 0.00 3.28
364 719 2.241722 CGTGATGTTCGTGCCAAATTC 58.758 47.619 0.00 0.00 0.00 2.17
367 722 1.199097 GATGTTCGTGCCAAATTCCGT 59.801 47.619 0.00 0.00 0.00 4.69
368 723 0.589223 TGTTCGTGCCAAATTCCGTC 59.411 50.000 0.00 0.00 0.00 4.79
375 730 1.268794 TGCCAAATTCCGTCGTGTTTG 60.269 47.619 7.05 7.05 0.00 2.93
380 735 2.178912 ATTCCGTCGTGTTTGGACAT 57.821 45.000 0.00 0.00 38.23 3.06
381 736 1.956297 TTCCGTCGTGTTTGGACATT 58.044 45.000 0.00 0.00 38.23 2.71
382 737 1.956297 TCCGTCGTGTTTGGACATTT 58.044 45.000 0.00 0.00 38.23 2.32
383 738 3.109044 TCCGTCGTGTTTGGACATTTA 57.891 42.857 0.00 0.00 38.23 1.40
386 741 3.249080 CCGTCGTGTTTGGACATTTAAGT 59.751 43.478 0.00 0.00 38.23 2.24
387 742 4.448395 CCGTCGTGTTTGGACATTTAAGTA 59.552 41.667 0.00 0.00 38.23 2.24
389 744 5.379827 GTCGTGTTTGGACATTTAAGTAGC 58.620 41.667 0.00 0.00 38.23 3.58
390 745 5.178809 GTCGTGTTTGGACATTTAAGTAGCT 59.821 40.000 0.00 0.00 38.23 3.32
392 747 5.178623 CGTGTTTGGACATTTAAGTAGCTCA 59.821 40.000 0.00 0.00 38.23 4.26
393 748 6.128282 CGTGTTTGGACATTTAAGTAGCTCAT 60.128 38.462 0.00 0.00 38.23 2.90
397 752 8.821894 GTTTGGACATTTAAGTAGCTCATAGAG 58.178 37.037 0.00 0.00 0.00 2.43
401 756 7.202011 GGACATTTAAGTAGCTCATAGAGGGAA 60.202 40.741 0.00 0.00 0.00 3.97
402 757 8.090788 ACATTTAAGTAGCTCATAGAGGGAAA 57.909 34.615 0.00 0.00 0.00 3.13
403 758 8.548877 ACATTTAAGTAGCTCATAGAGGGAAAA 58.451 33.333 0.00 0.00 0.00 2.29
404 759 8.831550 CATTTAAGTAGCTCATAGAGGGAAAAC 58.168 37.037 0.00 0.00 0.00 2.43
406 761 6.374417 AAGTAGCTCATAGAGGGAAAACAA 57.626 37.500 0.00 0.00 0.00 2.83
407 762 5.983540 AGTAGCTCATAGAGGGAAAACAAG 58.016 41.667 0.00 0.00 0.00 3.16
409 764 5.505181 AGCTCATAGAGGGAAAACAAGAA 57.495 39.130 0.00 0.00 0.00 2.52
410 765 5.495640 AGCTCATAGAGGGAAAACAAGAAG 58.504 41.667 0.00 0.00 0.00 2.85
411 766 4.095632 GCTCATAGAGGGAAAACAAGAAGC 59.904 45.833 0.00 0.00 0.00 3.86
412 767 5.241403 TCATAGAGGGAAAACAAGAAGCA 57.759 39.130 0.00 0.00 0.00 3.91
413 768 5.630121 TCATAGAGGGAAAACAAGAAGCAA 58.370 37.500 0.00 0.00 0.00 3.91
414 769 6.068010 TCATAGAGGGAAAACAAGAAGCAAA 58.932 36.000 0.00 0.00 0.00 3.68
415 770 6.549364 TCATAGAGGGAAAACAAGAAGCAAAA 59.451 34.615 0.00 0.00 0.00 2.44
416 771 5.876651 AGAGGGAAAACAAGAAGCAAAAT 57.123 34.783 0.00 0.00 0.00 1.82
417 772 6.239217 AGAGGGAAAACAAGAAGCAAAATT 57.761 33.333 0.00 0.00 0.00 1.82
418 773 6.051074 AGAGGGAAAACAAGAAGCAAAATTG 58.949 36.000 0.00 0.00 0.00 2.32
419 774 5.988287 AGGGAAAACAAGAAGCAAAATTGA 58.012 33.333 0.00 0.00 0.00 2.57
422 777 5.817296 GGAAAACAAGAAGCAAAATTGAGGT 59.183 36.000 0.00 0.00 0.00 3.85
423 778 6.018751 GGAAAACAAGAAGCAAAATTGAGGTC 60.019 38.462 0.00 0.00 0.00 3.85
425 780 5.192327 ACAAGAAGCAAAATTGAGGTCTG 57.808 39.130 0.00 0.00 0.00 3.51
426 781 4.646492 ACAAGAAGCAAAATTGAGGTCTGT 59.354 37.500 0.00 0.00 0.00 3.41
427 782 4.843220 AGAAGCAAAATTGAGGTCTGTG 57.157 40.909 0.00 0.00 0.00 3.66
429 784 4.518211 AGAAGCAAAATTGAGGTCTGTGAG 59.482 41.667 0.00 0.00 0.00 3.51
430 785 4.090761 AGCAAAATTGAGGTCTGTGAGA 57.909 40.909 0.00 0.00 0.00 3.27
431 786 4.464008 AGCAAAATTGAGGTCTGTGAGAA 58.536 39.130 0.00 0.00 0.00 2.87
433 788 5.009410 AGCAAAATTGAGGTCTGTGAGAAAG 59.991 40.000 0.00 0.00 0.00 2.62
435 790 6.681368 GCAAAATTGAGGTCTGTGAGAAAGTT 60.681 38.462 0.00 0.00 0.00 2.66
436 791 6.625873 AAATTGAGGTCTGTGAGAAAGTTC 57.374 37.500 0.00 0.00 0.00 3.01
437 792 4.753516 TTGAGGTCTGTGAGAAAGTTCA 57.246 40.909 0.00 0.00 0.00 3.18
439 794 5.296151 TGAGGTCTGTGAGAAAGTTCATT 57.704 39.130 0.00 0.00 0.00 2.57
440 795 5.059161 TGAGGTCTGTGAGAAAGTTCATTG 58.941 41.667 0.00 0.00 0.00 2.82
444 799 5.296780 GGTCTGTGAGAAAGTTCATTGTTCA 59.703 40.000 0.00 0.00 0.00 3.18
445 800 6.425504 GTCTGTGAGAAAGTTCATTGTTCAG 58.574 40.000 0.00 0.00 0.00 3.02
447 802 6.258727 TCTGTGAGAAAGTTCATTGTTCAGAC 59.741 38.462 0.00 0.00 0.00 3.51
448 803 5.296780 TGTGAGAAAGTTCATTGTTCAGACC 59.703 40.000 0.00 0.00 0.00 3.85
449 804 5.296780 GTGAGAAAGTTCATTGTTCAGACCA 59.703 40.000 0.00 0.00 0.00 4.02
451 806 6.547141 TGAGAAAGTTCATTGTTCAGACCAAT 59.453 34.615 0.00 0.00 32.88 3.16
452 807 7.068593 TGAGAAAGTTCATTGTTCAGACCAATT 59.931 33.333 0.00 0.00 30.28 2.32
453 808 8.463930 AGAAAGTTCATTGTTCAGACCAATTA 57.536 30.769 0.00 0.00 30.28 1.40
477 832 4.898607 TTTTTGCCACGAGCTCCT 57.101 50.000 8.47 0.00 44.23 3.69
478 833 2.629002 TTTTTGCCACGAGCTCCTC 58.371 52.632 8.47 0.00 44.23 3.71
479 834 0.179032 TTTTTGCCACGAGCTCCTCA 60.179 50.000 8.47 0.00 44.23 3.86
480 835 0.603707 TTTTGCCACGAGCTCCTCAG 60.604 55.000 8.47 0.00 44.23 3.35
481 836 1.471829 TTTGCCACGAGCTCCTCAGA 61.472 55.000 8.47 0.00 44.23 3.27
482 837 1.260538 TTGCCACGAGCTCCTCAGAT 61.261 55.000 8.47 0.00 44.23 2.90
483 838 1.227205 GCCACGAGCTCCTCAGATG 60.227 63.158 8.47 0.00 38.99 2.90
484 839 1.954362 GCCACGAGCTCCTCAGATGT 61.954 60.000 8.47 0.00 38.99 3.06
485 840 0.102120 CCACGAGCTCCTCAGATGTC 59.898 60.000 8.47 0.00 0.00 3.06
486 841 0.102120 CACGAGCTCCTCAGATGTCC 59.898 60.000 8.47 0.00 0.00 4.02
487 842 0.323816 ACGAGCTCCTCAGATGTCCA 60.324 55.000 8.47 0.00 0.00 4.02
488 843 0.385029 CGAGCTCCTCAGATGTCCAG 59.615 60.000 8.47 0.00 0.00 3.86
489 844 1.774110 GAGCTCCTCAGATGTCCAGA 58.226 55.000 0.87 0.00 0.00 3.86
490 845 1.408702 GAGCTCCTCAGATGTCCAGAC 59.591 57.143 0.87 0.00 0.00 3.51
491 846 1.189752 GCTCCTCAGATGTCCAGACA 58.810 55.000 2.42 2.42 46.44 3.41
492 847 1.134848 GCTCCTCAGATGTCCAGACAC 60.135 57.143 1.88 0.00 45.05 3.67
493 848 1.133982 CTCCTCAGATGTCCAGACACG 59.866 57.143 1.88 0.00 45.05 4.49
494 849 1.177401 CCTCAGATGTCCAGACACGA 58.823 55.000 1.88 0.00 45.05 4.35
495 850 1.753649 CCTCAGATGTCCAGACACGAT 59.246 52.381 1.88 0.00 45.05 3.73
496 851 2.952310 CCTCAGATGTCCAGACACGATA 59.048 50.000 1.88 0.00 45.05 2.92
497 852 3.381590 CCTCAGATGTCCAGACACGATAA 59.618 47.826 1.88 0.00 45.05 1.75
498 853 4.142160 CCTCAGATGTCCAGACACGATAAA 60.142 45.833 1.88 0.00 45.05 1.40
499 854 5.400066 TCAGATGTCCAGACACGATAAAA 57.600 39.130 1.88 0.00 45.05 1.52
500 855 5.977635 TCAGATGTCCAGACACGATAAAAT 58.022 37.500 1.88 0.00 45.05 1.82
501 856 6.406370 TCAGATGTCCAGACACGATAAAATT 58.594 36.000 1.88 0.00 45.05 1.82
502 857 6.878923 TCAGATGTCCAGACACGATAAAATTT 59.121 34.615 1.88 0.00 45.05 1.82
503 858 6.963242 CAGATGTCCAGACACGATAAAATTTG 59.037 38.462 1.88 0.00 45.05 2.32
504 859 5.621197 TGTCCAGACACGATAAAATTTGG 57.379 39.130 0.00 0.00 36.21 3.28
505 860 5.067273 TGTCCAGACACGATAAAATTTGGT 58.933 37.500 0.00 0.00 36.21 3.67
506 861 6.231951 TGTCCAGACACGATAAAATTTGGTA 58.768 36.000 0.00 0.00 36.21 3.25
507 862 6.148150 TGTCCAGACACGATAAAATTTGGTAC 59.852 38.462 0.00 0.00 36.21 3.34
508 863 5.349270 TCCAGACACGATAAAATTTGGTACG 59.651 40.000 0.00 0.00 0.00 3.67
509 864 5.446741 CCAGACACGATAAAATTTGGTACGG 60.447 44.000 0.00 0.00 0.00 4.02
510 865 5.349270 CAGACACGATAAAATTTGGTACGGA 59.651 40.000 0.00 0.00 0.00 4.69
511 866 5.349543 AGACACGATAAAATTTGGTACGGAC 59.650 40.000 0.00 0.00 0.00 4.79
512 867 4.996122 ACACGATAAAATTTGGTACGGACA 59.004 37.500 0.00 0.00 0.00 4.02
513 868 5.644636 ACACGATAAAATTTGGTACGGACAT 59.355 36.000 0.00 0.00 0.00 3.06
514 869 6.183360 ACACGATAAAATTTGGTACGGACATC 60.183 38.462 0.00 0.00 0.00 3.06
515 870 5.005971 ACGATAAAATTTGGTACGGACATCG 59.994 40.000 10.32 10.32 45.88 3.84
516 871 3.481112 AAAATTTGGTACGGACATCGC 57.519 42.857 0.00 0.00 43.89 4.58
517 872 2.102070 AATTTGGTACGGACATCGCA 57.898 45.000 0.00 0.00 43.89 5.10
518 873 1.365699 ATTTGGTACGGACATCGCAC 58.634 50.000 0.00 0.00 43.89 5.34
519 874 0.033642 TTTGGTACGGACATCGCACA 59.966 50.000 0.00 0.00 43.89 4.57
520 875 0.668096 TTGGTACGGACATCGCACAC 60.668 55.000 0.00 0.00 43.89 3.82
521 876 1.214589 GGTACGGACATCGCACACT 59.785 57.895 0.00 0.00 43.89 3.55
522 877 0.801067 GGTACGGACATCGCACACTC 60.801 60.000 0.00 0.00 43.89 3.51
523 878 0.801067 GTACGGACATCGCACACTCC 60.801 60.000 0.00 0.00 43.89 3.85
524 879 1.245376 TACGGACATCGCACACTCCA 61.245 55.000 0.00 0.00 43.89 3.86
525 880 1.374125 CGGACATCGCACACTCCAA 60.374 57.895 0.00 0.00 0.00 3.53
526 881 0.740868 CGGACATCGCACACTCCAAT 60.741 55.000 0.00 0.00 0.00 3.16
527 882 1.470805 CGGACATCGCACACTCCAATA 60.471 52.381 0.00 0.00 0.00 1.90
528 883 2.803133 CGGACATCGCACACTCCAATAT 60.803 50.000 0.00 0.00 0.00 1.28
529 884 2.802816 GGACATCGCACACTCCAATATC 59.197 50.000 0.00 0.00 0.00 1.63
530 885 3.493350 GGACATCGCACACTCCAATATCT 60.493 47.826 0.00 0.00 0.00 1.98
531 886 4.122776 GACATCGCACACTCCAATATCTT 58.877 43.478 0.00 0.00 0.00 2.40
532 887 4.517285 ACATCGCACACTCCAATATCTTT 58.483 39.130 0.00 0.00 0.00 2.52
533 888 4.572389 ACATCGCACACTCCAATATCTTTC 59.428 41.667 0.00 0.00 0.00 2.62
534 889 4.200838 TCGCACACTCCAATATCTTTCA 57.799 40.909 0.00 0.00 0.00 2.69
535 890 4.769688 TCGCACACTCCAATATCTTTCAT 58.230 39.130 0.00 0.00 0.00 2.57
536 891 4.571984 TCGCACACTCCAATATCTTTCATG 59.428 41.667 0.00 0.00 0.00 3.07
537 892 4.333649 CGCACACTCCAATATCTTTCATGT 59.666 41.667 0.00 0.00 0.00 3.21
538 893 5.523552 CGCACACTCCAATATCTTTCATGTA 59.476 40.000 0.00 0.00 0.00 2.29
539 894 6.037062 CGCACACTCCAATATCTTTCATGTAA 59.963 38.462 0.00 0.00 0.00 2.41
540 895 7.413988 CGCACACTCCAATATCTTTCATGTAAA 60.414 37.037 0.00 0.00 0.00 2.01
541 896 8.243426 GCACACTCCAATATCTTTCATGTAAAA 58.757 33.333 0.00 0.00 0.00 1.52
598 953 7.519032 TTTTAATTTACTGTTCACCAGGAGG 57.481 36.000 0.00 0.00 46.06 4.30
599 954 4.993705 AATTTACTGTTCACCAGGAGGA 57.006 40.909 0.00 0.00 46.06 3.71
601 956 1.267121 TACTGTTCACCAGGAGGAGC 58.733 55.000 0.00 0.00 46.06 4.70
604 959 2.119611 TTCACCAGGAGGAGCCGA 59.880 61.111 0.00 0.00 43.43 5.54
619 974 4.559502 CGAGCCCGGGAAATGAAT 57.440 55.556 29.31 0.00 0.00 2.57
620 975 3.698250 CGAGCCCGGGAAATGAATA 57.302 52.632 29.31 0.00 0.00 1.75
621 976 2.185004 CGAGCCCGGGAAATGAATAT 57.815 50.000 29.31 0.00 0.00 1.28
622 977 2.504367 CGAGCCCGGGAAATGAATATT 58.496 47.619 29.31 0.00 0.00 1.28
623 978 2.484264 CGAGCCCGGGAAATGAATATTC 59.516 50.000 29.31 8.60 0.00 1.75
624 979 2.484264 GAGCCCGGGAAATGAATATTCG 59.516 50.000 29.31 0.00 0.00 3.34
625 980 1.068541 GCCCGGGAAATGAATATTCGC 60.069 52.381 29.31 0.00 36.65 4.70
627 982 2.484264 CCCGGGAAATGAATATTCGCTC 59.516 50.000 18.48 6.80 37.53 5.03
628 983 3.138304 CCGGGAAATGAATATTCGCTCA 58.862 45.455 10.80 0.00 37.53 4.26
629 984 3.187227 CCGGGAAATGAATATTCGCTCAG 59.813 47.826 10.80 5.41 37.53 3.35
632 987 5.059833 GGGAAATGAATATTCGCTCAGAGT 58.940 41.667 10.80 0.00 36.94 3.24
633 988 5.049818 GGGAAATGAATATTCGCTCAGAGTG 60.050 44.000 10.80 4.41 36.94 3.51
634 989 5.755375 GGAAATGAATATTCGCTCAGAGTGA 59.245 40.000 9.78 9.78 32.06 3.41
635 990 6.426328 GGAAATGAATATTCGCTCAGAGTGAT 59.574 38.462 14.57 7.64 34.32 3.06
636 991 7.600375 GGAAATGAATATTCGCTCAGAGTGATA 59.400 37.037 14.57 9.40 34.32 2.15
637 992 8.531622 AAATGAATATTCGCTCAGAGTGATAG 57.468 34.615 14.57 0.00 34.32 2.08
638 993 6.641169 TGAATATTCGCTCAGAGTGATAGT 57.359 37.500 14.57 8.39 34.32 2.12
643 998 9.988815 AATATTCGCTCAGAGTGATAGTATTTT 57.011 29.630 14.57 4.33 34.32 1.82
644 999 7.706281 ATTCGCTCAGAGTGATAGTATTTTG 57.294 36.000 14.57 0.00 34.32 2.44
645 1000 6.208988 TCGCTCAGAGTGATAGTATTTTGT 57.791 37.500 9.78 0.00 28.30 2.83
646 1001 6.631016 TCGCTCAGAGTGATAGTATTTTGTT 58.369 36.000 9.78 0.00 28.30 2.83
647 1002 7.768240 TCGCTCAGAGTGATAGTATTTTGTTA 58.232 34.615 9.78 0.00 28.30 2.41
648 1003 8.248253 TCGCTCAGAGTGATAGTATTTTGTTAA 58.752 33.333 9.78 0.00 28.30 2.01
688 1051 3.617540 TTTTTGTCAGTACATGGTGCG 57.382 42.857 0.00 0.00 34.97 5.34
689 1052 0.871722 TTTGTCAGTACATGGTGCGC 59.128 50.000 0.00 0.00 34.97 6.09
697 1063 2.287457 TACATGGTGCGCGTACCCTC 62.287 60.000 37.87 18.14 40.09 4.30
709 1075 1.789523 GTACCCTCCTACATGCTGGA 58.210 55.000 7.02 7.02 0.00 3.86
710 1076 2.330216 GTACCCTCCTACATGCTGGAT 58.670 52.381 7.60 0.00 0.00 3.41
711 1077 1.428869 ACCCTCCTACATGCTGGATC 58.571 55.000 7.60 0.00 0.00 3.36
712 1078 1.061812 ACCCTCCTACATGCTGGATCT 60.062 52.381 7.60 0.00 0.00 2.75
720 1090 1.134877 ACATGCTGGATCTGTCTCGTG 60.135 52.381 0.00 0.00 0.00 4.35
724 1094 0.179116 CTGGATCTGTCTCGTGCCAG 60.179 60.000 0.00 0.00 37.21 4.85
812 1187 2.577700 CCTCCACGTACAGCTCTATCT 58.422 52.381 0.00 0.00 0.00 1.98
814 1189 2.210961 TCCACGTACAGCTCTATCTCG 58.789 52.381 0.00 0.00 0.00 4.04
934 1311 1.945819 GCCAAGTGTCATCACCATCGT 60.946 52.381 0.00 0.00 44.83 3.73
936 1313 2.416547 CCAAGTGTCATCACCATCGTTC 59.583 50.000 0.00 0.00 44.83 3.95
937 1314 3.329386 CAAGTGTCATCACCATCGTTCT 58.671 45.455 0.00 0.00 44.83 3.01
938 1315 4.494484 CAAGTGTCATCACCATCGTTCTA 58.506 43.478 0.00 0.00 44.83 2.10
939 1316 4.801330 AGTGTCATCACCATCGTTCTAA 57.199 40.909 0.00 0.00 44.83 2.10
940 1317 5.147330 AGTGTCATCACCATCGTTCTAAA 57.853 39.130 0.00 0.00 44.83 1.85
946 1323 3.766151 TCACCATCGTTCTAAACTAGCG 58.234 45.455 0.00 0.00 0.00 4.26
994 1374 1.285578 CGCTAGCTTTTCTCTGCCTC 58.714 55.000 13.93 0.00 0.00 4.70
1015 1395 0.908910 AGTAATGGCGACCATGGTGA 59.091 50.000 25.52 3.28 44.40 4.02
1262 1650 1.381327 GTCGACCTCCTCATCCCCA 60.381 63.158 3.51 0.00 0.00 4.96
1263 1651 1.381327 TCGACCTCCTCATCCCCAC 60.381 63.158 0.00 0.00 0.00 4.61
1566 1960 4.785512 AGAGCAAGTCGAGCGGCG 62.786 66.667 0.51 0.51 42.69 6.46
1765 2182 7.274686 GCCACGTTGCAATTTTGTATTACTATT 59.725 33.333 6.76 0.00 0.00 1.73
1824 2241 7.734942 TGTTTTCATGGCTTCTTATCCTTTTT 58.265 30.769 0.00 0.00 0.00 1.94
1900 4067 1.124780 TTTCACCACCGTCCTCTTGA 58.875 50.000 0.00 0.00 0.00 3.02
1909 6033 2.299297 ACCGTCCTCTTGAGGTTAACTG 59.701 50.000 15.44 6.69 32.17 3.16
1925 6436 9.477484 GAGGTTAACTGTATATTTGATGACGAT 57.523 33.333 5.42 0.00 0.00 3.73
1927 6438 9.042008 GGTTAACTGTATATTTGATGACGATGT 57.958 33.333 5.42 0.00 0.00 3.06
1957 6473 1.006102 AGTACAGACGCAAGCGCTT 60.006 52.632 18.98 18.98 44.19 4.68
1961 6477 2.225068 ACAGACGCAAGCGCTTATAT 57.775 45.000 24.55 10.78 44.19 0.86
2002 6523 4.965042 TCTATATAAATGCACACACGCG 57.035 40.909 3.53 3.53 33.35 6.01
2022 6558 0.247736 CCCTGTCTCCACTTTCGAGG 59.752 60.000 0.00 0.00 0.00 4.63
2031 6567 1.344763 CCACTTTCGAGGGACTGAGTT 59.655 52.381 0.00 0.00 41.55 3.01
2032 6568 2.561419 CCACTTTCGAGGGACTGAGTTA 59.439 50.000 0.00 0.00 41.55 2.24
2033 6569 3.576648 CACTTTCGAGGGACTGAGTTAC 58.423 50.000 0.00 0.00 41.55 2.50
2046 6582 4.194640 ACTGAGTTACCACATCATCATGC 58.805 43.478 0.00 0.00 32.57 4.06
2059 6595 0.678395 ATCATGCGATCGAGGAAGCT 59.322 50.000 21.57 0.00 0.00 3.74
2060 6596 1.318576 TCATGCGATCGAGGAAGCTA 58.681 50.000 21.57 0.00 0.00 3.32
2061 6597 1.889170 TCATGCGATCGAGGAAGCTAT 59.111 47.619 21.57 0.00 0.00 2.97
2064 6600 1.889170 TGCGATCGAGGAAGCTATCAT 59.111 47.619 21.57 0.00 0.00 2.45
2067 6603 3.375610 GCGATCGAGGAAGCTATCATAGA 59.624 47.826 21.57 0.00 0.00 1.98
2089 6625 1.790838 CGCCTTTGTAGTCGACGAGAG 60.791 57.143 10.46 5.33 0.00 3.20
2093 6629 3.502920 CTTTGTAGTCGACGAGAGCATT 58.497 45.455 10.46 0.00 0.00 3.56
2114 6650 0.396435 TCTCCCACTGAACGCACATT 59.604 50.000 0.00 0.00 0.00 2.71
2180 6716 3.370104 ACTCTCTGGCTAGTATGTGCTT 58.630 45.455 0.00 0.00 0.00 3.91
2202 6738 6.294176 GCTTCATGTTTATCCGCTAATCCATT 60.294 38.462 0.00 0.00 0.00 3.16
2299 6837 8.085909 ACCTGAAAATTAAATTTGGGTTAGTCG 58.914 33.333 0.00 0.00 31.29 4.18
2363 6977 1.254026 TCGGACTAGTCTGTGGGTTG 58.746 55.000 27.11 6.98 37.27 3.77
2365 6979 1.067776 CGGACTAGTCTGTGGGTTGTC 60.068 57.143 21.64 1.46 0.00 3.18
2434 7055 1.438814 CCGAAGCCCATTCCAATGC 59.561 57.895 0.00 0.00 35.08 3.56
2439 7060 0.611618 AGCCCATTCCAATGCGACAA 60.612 50.000 0.00 0.00 35.08 3.18
2441 7062 1.736696 GCCCATTCCAATGCGACAAAG 60.737 52.381 0.00 0.00 35.08 2.77
2449 7070 2.487762 CCAATGCGACAAAGCCTTCTTA 59.512 45.455 0.00 0.00 36.02 2.10
2460 7081 6.986250 ACAAAGCCTTCTTATTTCTCCTTTG 58.014 36.000 0.00 0.00 41.96 2.77
2462 7083 7.040132 ACAAAGCCTTCTTATTTCTCCTTTGAG 60.040 37.037 14.41 0.00 39.91 3.02
2505 8648 4.315803 TGCGTTTTTGTTTTTCCTTTCCA 58.684 34.783 0.00 0.00 0.00 3.53
2509 8652 7.281100 TGCGTTTTTGTTTTTCCTTTCCATTAT 59.719 29.630 0.00 0.00 0.00 1.28
2516 8659 9.990360 TTGTTTTTCCTTTCCATTATTAGTTCC 57.010 29.630 0.00 0.00 0.00 3.62
2517 8660 9.374711 TGTTTTTCCTTTCCATTATTAGTTCCT 57.625 29.630 0.00 0.00 0.00 3.36
2523 8666 9.374711 TCCTTTCCATTATTAGTTCCTTTTTGT 57.625 29.630 0.00 0.00 0.00 2.83
2524 8667 9.996554 CCTTTCCATTATTAGTTCCTTTTTGTT 57.003 29.630 0.00 0.00 0.00 2.83
2557 10546 4.714308 TGGGTATTTTTGGGATGTTGGATC 59.286 41.667 0.00 0.00 0.00 3.36
2614 10603 3.927758 TGCGCCAAAATTTCATGATTCTG 59.072 39.130 4.18 0.00 0.00 3.02
2621 10610 8.814235 GCCAAAATTTCATGATTCTGTGATTAG 58.186 33.333 0.00 0.00 0.00 1.73
2622 10611 8.814235 CCAAAATTTCATGATTCTGTGATTAGC 58.186 33.333 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.334759 CACTTCGGCAAGATTCTGATGAAT 59.665 41.667 4.13 0.00 44.79 2.57
42 43 1.032114 CCCCCACTTCGGCAAGATTC 61.032 60.000 4.13 0.00 33.34 2.52
70 71 4.731853 TCCCACTCCGCCCCATGA 62.732 66.667 0.00 0.00 0.00 3.07
71 72 4.489771 GTCCCACTCCGCCCCATG 62.490 72.222 0.00 0.00 0.00 3.66
78 81 3.322466 AAGCCCAGTCCCACTCCG 61.322 66.667 0.00 0.00 0.00 4.63
95 98 2.033294 TGCAACATGCCGCCTACA 59.967 55.556 4.63 0.00 44.23 2.74
114 117 4.479993 ATGGCCACTCGAGCAGCC 62.480 66.667 30.15 30.15 45.96 4.85
115 118 3.200593 CATGGCCACTCGAGCAGC 61.201 66.667 8.16 15.49 0.00 5.25
116 119 2.513204 CCATGGCCACTCGAGCAG 60.513 66.667 8.16 4.99 0.00 4.24
120 123 2.871795 TAGCTCCCATGGCCACTCGA 62.872 60.000 8.16 1.80 0.00 4.04
122 125 0.179034 CTTAGCTCCCATGGCCACTC 60.179 60.000 8.16 0.00 0.00 3.51
124 127 0.255890 TTCTTAGCTCCCATGGCCAC 59.744 55.000 8.16 0.00 0.00 5.01
139 142 7.670364 CCCATTTCTGGTTTCATTTAGTTCTT 58.330 34.615 0.00 0.00 41.37 2.52
140 143 6.295292 GCCCATTTCTGGTTTCATTTAGTTCT 60.295 38.462 0.00 0.00 41.37 3.01
141 144 5.869344 GCCCATTTCTGGTTTCATTTAGTTC 59.131 40.000 0.00 0.00 41.37 3.01
142 145 5.543790 AGCCCATTTCTGGTTTCATTTAGTT 59.456 36.000 0.00 0.00 41.37 2.24
144 147 5.665916 AGCCCATTTCTGGTTTCATTTAG 57.334 39.130 0.00 0.00 41.37 1.85
145 148 6.252995 ACTAGCCCATTTCTGGTTTCATTTA 58.747 36.000 0.00 0.00 41.37 1.40
146 149 5.086621 ACTAGCCCATTTCTGGTTTCATTT 58.913 37.500 0.00 0.00 41.37 2.32
147 150 4.677182 ACTAGCCCATTTCTGGTTTCATT 58.323 39.130 0.00 0.00 41.37 2.57
148 151 4.322057 ACTAGCCCATTTCTGGTTTCAT 57.678 40.909 0.00 0.00 41.37 2.57
149 152 3.806949 ACTAGCCCATTTCTGGTTTCA 57.193 42.857 0.00 0.00 41.37 2.69
150 153 4.640647 CCTAACTAGCCCATTTCTGGTTTC 59.359 45.833 0.00 0.00 41.37 2.78
151 154 4.600062 CCTAACTAGCCCATTTCTGGTTT 58.400 43.478 0.00 0.00 41.37 3.27
152 155 3.624959 GCCTAACTAGCCCATTTCTGGTT 60.625 47.826 0.00 0.00 41.37 3.67
153 156 2.092375 GCCTAACTAGCCCATTTCTGGT 60.092 50.000 0.00 0.00 41.37 4.00
154 157 2.576615 GCCTAACTAGCCCATTTCTGG 58.423 52.381 0.00 0.00 42.73 3.86
155 158 2.158957 TCGCCTAACTAGCCCATTTCTG 60.159 50.000 0.00 0.00 0.00 3.02
156 159 2.116238 TCGCCTAACTAGCCCATTTCT 58.884 47.619 0.00 0.00 0.00 2.52
157 160 2.614829 TCGCCTAACTAGCCCATTTC 57.385 50.000 0.00 0.00 0.00 2.17
158 161 4.699925 TTATCGCCTAACTAGCCCATTT 57.300 40.909 0.00 0.00 0.00 2.32
159 162 4.910458 ATTATCGCCTAACTAGCCCATT 57.090 40.909 0.00 0.00 0.00 3.16
160 163 4.323562 GGAATTATCGCCTAACTAGCCCAT 60.324 45.833 0.00 0.00 0.00 4.00
161 164 3.007614 GGAATTATCGCCTAACTAGCCCA 59.992 47.826 0.00 0.00 0.00 5.36
162 165 3.597255 GGAATTATCGCCTAACTAGCCC 58.403 50.000 0.00 0.00 0.00 5.19
163 166 3.597255 GGGAATTATCGCCTAACTAGCC 58.403 50.000 0.00 0.00 32.60 3.93
173 176 3.636764 ACCTTTTGATGGGGAATTATCGC 59.363 43.478 0.00 0.00 37.77 4.58
174 177 5.852282 AACCTTTTGATGGGGAATTATCG 57.148 39.130 0.00 0.00 0.00 2.92
175 178 7.047891 GGAAAACCTTTTGATGGGGAATTATC 58.952 38.462 0.00 0.00 0.00 1.75
176 179 6.069673 GGGAAAACCTTTTGATGGGGAATTAT 60.070 38.462 0.00 0.00 35.85 1.28
177 180 5.249622 GGGAAAACCTTTTGATGGGGAATTA 59.750 40.000 0.00 0.00 35.85 1.40
178 181 4.042809 GGGAAAACCTTTTGATGGGGAATT 59.957 41.667 0.00 0.00 35.85 2.17
179 182 3.587061 GGGAAAACCTTTTGATGGGGAAT 59.413 43.478 0.00 0.00 35.85 3.01
180 183 2.976185 GGGAAAACCTTTTGATGGGGAA 59.024 45.455 0.00 0.00 35.85 3.97
181 184 2.615391 GGGAAAACCTTTTGATGGGGA 58.385 47.619 0.00 0.00 35.85 4.81
198 201 9.886132 GACTCTTAGTGTTTTTAATATGAGGGA 57.114 33.333 0.00 0.00 30.99 4.20
199 202 8.818057 CGACTCTTAGTGTTTTTAATATGAGGG 58.182 37.037 0.00 0.00 30.99 4.30
200 203 9.582431 TCGACTCTTAGTGTTTTTAATATGAGG 57.418 33.333 0.00 0.00 30.99 3.86
205 208 8.430063 CGCTTTCGACTCTTAGTGTTTTTAATA 58.570 33.333 0.00 0.00 38.10 0.98
206 209 7.288672 CGCTTTCGACTCTTAGTGTTTTTAAT 58.711 34.615 0.00 0.00 38.10 1.40
207 210 6.292488 CCGCTTTCGACTCTTAGTGTTTTTAA 60.292 38.462 0.00 0.00 38.10 1.52
208 211 5.176223 CCGCTTTCGACTCTTAGTGTTTTTA 59.824 40.000 0.00 0.00 38.10 1.52
209 212 4.025145 CCGCTTTCGACTCTTAGTGTTTTT 60.025 41.667 0.00 0.00 38.10 1.94
210 213 3.493503 CCGCTTTCGACTCTTAGTGTTTT 59.506 43.478 0.00 0.00 38.10 2.43
211 214 3.057734 CCGCTTTCGACTCTTAGTGTTT 58.942 45.455 0.00 0.00 38.10 2.83
212 215 2.609737 CCCGCTTTCGACTCTTAGTGTT 60.610 50.000 0.00 0.00 38.10 3.32
213 216 1.067776 CCCGCTTTCGACTCTTAGTGT 60.068 52.381 0.00 0.00 38.10 3.55
214 217 1.630148 CCCGCTTTCGACTCTTAGTG 58.370 55.000 0.00 0.00 38.10 2.74
215 218 0.531200 CCCCGCTTTCGACTCTTAGT 59.469 55.000 0.00 0.00 38.10 2.24
216 219 0.531200 ACCCCGCTTTCGACTCTTAG 59.469 55.000 0.00 0.00 38.10 2.18
217 220 0.971386 AACCCCGCTTTCGACTCTTA 59.029 50.000 0.00 0.00 38.10 2.10
218 221 0.108019 AAACCCCGCTTTCGACTCTT 59.892 50.000 0.00 0.00 38.10 2.85
219 222 0.108019 AAAACCCCGCTTTCGACTCT 59.892 50.000 0.00 0.00 38.10 3.24
220 223 0.237498 CAAAACCCCGCTTTCGACTC 59.763 55.000 0.00 0.00 38.10 3.36
221 224 1.170290 CCAAAACCCCGCTTTCGACT 61.170 55.000 0.00 0.00 38.10 4.18
222 225 1.284715 CCAAAACCCCGCTTTCGAC 59.715 57.895 0.00 0.00 38.10 4.20
223 226 2.557372 GCCAAAACCCCGCTTTCGA 61.557 57.895 0.00 0.00 38.10 3.71
224 227 2.049526 GCCAAAACCCCGCTTTCG 60.050 61.111 0.00 0.00 0.00 3.46
225 228 1.289066 GAGCCAAAACCCCGCTTTC 59.711 57.895 0.00 0.00 31.61 2.62
226 229 2.207229 GGAGCCAAAACCCCGCTTT 61.207 57.895 0.00 0.00 31.61 3.51
227 230 2.600470 GGAGCCAAAACCCCGCTT 60.600 61.111 0.00 0.00 31.61 4.68
228 231 4.678743 GGGAGCCAAAACCCCGCT 62.679 66.667 0.00 0.00 40.19 5.52
231 234 2.989253 CACGGGAGCCAAAACCCC 60.989 66.667 0.00 0.00 42.86 4.95
232 235 3.680786 GCACGGGAGCCAAAACCC 61.681 66.667 0.00 0.00 42.43 4.11
233 236 0.891904 TAAGCACGGGAGCCAAAACC 60.892 55.000 0.00 0.00 34.23 3.27
234 237 0.521735 CTAAGCACGGGAGCCAAAAC 59.478 55.000 0.00 0.00 34.23 2.43
235 238 0.398696 TCTAAGCACGGGAGCCAAAA 59.601 50.000 0.00 0.00 34.23 2.44
236 239 0.618458 ATCTAAGCACGGGAGCCAAA 59.382 50.000 0.00 0.00 34.23 3.28
237 240 0.107703 CATCTAAGCACGGGAGCCAA 60.108 55.000 0.00 0.00 34.23 4.52
238 241 0.975556 TCATCTAAGCACGGGAGCCA 60.976 55.000 0.00 0.00 34.23 4.75
239 242 0.249657 CTCATCTAAGCACGGGAGCC 60.250 60.000 0.00 0.00 34.23 4.70
240 243 0.878086 GCTCATCTAAGCACGGGAGC 60.878 60.000 0.00 0.00 42.05 4.70
241 244 0.249657 GGCTCATCTAAGCACGGGAG 60.250 60.000 0.00 0.00 44.35 4.30
242 245 0.687757 AGGCTCATCTAAGCACGGGA 60.688 55.000 0.00 0.00 44.35 5.14
246 249 3.117491 TGCATAGGCTCATCTAAGCAC 57.883 47.619 0.00 0.00 44.35 4.40
248 251 5.240891 TGTAATGCATAGGCTCATCTAAGC 58.759 41.667 0.00 0.00 41.91 3.09
253 256 7.496529 TTTTACTGTAATGCATAGGCTCATC 57.503 36.000 0.00 0.00 41.91 2.92
318 321 6.756074 CACTTAAGCATCTTTCACCACAAAAA 59.244 34.615 1.29 0.00 0.00 1.94
319 322 6.272318 CACTTAAGCATCTTTCACCACAAAA 58.728 36.000 1.29 0.00 0.00 2.44
320 323 5.735922 GCACTTAAGCATCTTTCACCACAAA 60.736 40.000 1.29 0.00 0.00 2.83
321 324 4.261572 GCACTTAAGCATCTTTCACCACAA 60.262 41.667 1.29 0.00 0.00 3.33
322 325 3.253188 GCACTTAAGCATCTTTCACCACA 59.747 43.478 1.29 0.00 0.00 4.17
323 326 3.667960 CGCACTTAAGCATCTTTCACCAC 60.668 47.826 1.29 0.00 0.00 4.16
324 327 2.483877 CGCACTTAAGCATCTTTCACCA 59.516 45.455 1.29 0.00 0.00 4.17
325 328 2.484264 ACGCACTTAAGCATCTTTCACC 59.516 45.455 1.29 0.00 0.00 4.02
326 329 3.186409 TCACGCACTTAAGCATCTTTCAC 59.814 43.478 1.29 0.00 0.00 3.18
327 330 3.398406 TCACGCACTTAAGCATCTTTCA 58.602 40.909 1.29 0.00 0.00 2.69
328 331 4.142816 ACATCACGCACTTAAGCATCTTTC 60.143 41.667 1.29 0.00 0.00 2.62
329 332 3.753272 ACATCACGCACTTAAGCATCTTT 59.247 39.130 1.29 0.00 0.00 2.52
330 333 3.338249 ACATCACGCACTTAAGCATCTT 58.662 40.909 1.29 0.00 0.00 2.40
331 334 2.977914 ACATCACGCACTTAAGCATCT 58.022 42.857 1.29 0.00 0.00 2.90
332 335 3.674423 GAACATCACGCACTTAAGCATC 58.326 45.455 1.29 0.00 0.00 3.91
333 336 2.094258 CGAACATCACGCACTTAAGCAT 59.906 45.455 1.29 0.00 0.00 3.79
334 337 1.459209 CGAACATCACGCACTTAAGCA 59.541 47.619 1.29 0.00 0.00 3.91
335 338 1.459592 ACGAACATCACGCACTTAAGC 59.540 47.619 1.29 0.00 0.00 3.09
336 339 2.721797 GCACGAACATCACGCACTTAAG 60.722 50.000 0.00 0.00 0.00 1.85
337 340 1.193650 GCACGAACATCACGCACTTAA 59.806 47.619 0.00 0.00 0.00 1.85
338 341 0.787787 GCACGAACATCACGCACTTA 59.212 50.000 0.00 0.00 0.00 2.24
339 342 1.569493 GCACGAACATCACGCACTT 59.431 52.632 0.00 0.00 0.00 3.16
340 343 2.317609 GGCACGAACATCACGCACT 61.318 57.895 0.00 0.00 0.00 4.40
341 344 2.111932 TTGGCACGAACATCACGCAC 62.112 55.000 0.00 0.00 0.00 5.34
342 345 1.440145 TTTGGCACGAACATCACGCA 61.440 50.000 0.00 0.00 0.00 5.24
343 346 0.109781 ATTTGGCACGAACATCACGC 60.110 50.000 0.00 0.00 0.00 5.34
344 347 2.241722 GAATTTGGCACGAACATCACG 58.758 47.619 0.00 0.00 0.00 4.35
345 348 2.595386 GGAATTTGGCACGAACATCAC 58.405 47.619 0.00 0.00 0.00 3.06
346 349 1.198867 CGGAATTTGGCACGAACATCA 59.801 47.619 0.00 0.00 0.00 3.07
347 350 1.199097 ACGGAATTTGGCACGAACATC 59.801 47.619 1.25 0.00 0.00 3.06
348 351 1.199097 GACGGAATTTGGCACGAACAT 59.801 47.619 1.25 0.00 0.00 2.71
349 352 0.589223 GACGGAATTTGGCACGAACA 59.411 50.000 1.25 0.00 0.00 3.18
350 353 0.452122 CGACGGAATTTGGCACGAAC 60.452 55.000 1.25 0.00 0.00 3.95
351 354 0.881159 ACGACGGAATTTGGCACGAA 60.881 50.000 0.00 0.00 0.00 3.85
352 355 1.301087 ACGACGGAATTTGGCACGA 60.301 52.632 0.00 0.00 0.00 4.35
353 356 1.154488 CACGACGGAATTTGGCACG 60.154 57.895 0.00 0.00 0.00 5.34
354 357 0.309612 AACACGACGGAATTTGGCAC 59.690 50.000 0.00 0.00 0.00 5.01
355 358 1.025812 AAACACGACGGAATTTGGCA 58.974 45.000 0.00 0.00 0.00 4.92
356 359 1.404477 CAAACACGACGGAATTTGGC 58.596 50.000 0.00 0.00 0.00 4.52
357 360 2.044888 CCAAACACGACGGAATTTGG 57.955 50.000 19.03 19.03 43.69 3.28
361 716 2.178912 ATGTCCAAACACGACGGAAT 57.821 45.000 0.00 0.00 38.48 3.01
364 719 3.249080 ACTTAAATGTCCAAACACGACGG 59.751 43.478 0.00 0.00 38.48 4.79
367 722 5.302360 AGCTACTTAAATGTCCAAACACGA 58.698 37.500 0.00 0.00 38.48 4.35
368 723 5.178623 TGAGCTACTTAAATGTCCAAACACG 59.821 40.000 0.00 0.00 38.48 4.49
375 730 6.267928 TCCCTCTATGAGCTACTTAAATGTCC 59.732 42.308 0.00 0.00 0.00 4.02
380 735 7.913789 TGTTTTCCCTCTATGAGCTACTTAAA 58.086 34.615 0.00 0.00 0.00 1.52
381 736 7.490657 TGTTTTCCCTCTATGAGCTACTTAA 57.509 36.000 0.00 0.00 0.00 1.85
382 737 7.399191 TCTTGTTTTCCCTCTATGAGCTACTTA 59.601 37.037 0.00 0.00 0.00 2.24
383 738 6.213600 TCTTGTTTTCCCTCTATGAGCTACTT 59.786 38.462 0.00 0.00 0.00 2.24
386 741 6.620877 TTCTTGTTTTCCCTCTATGAGCTA 57.379 37.500 0.00 0.00 0.00 3.32
387 742 5.495640 CTTCTTGTTTTCCCTCTATGAGCT 58.504 41.667 0.00 0.00 0.00 4.09
389 744 5.248640 TGCTTCTTGTTTTCCCTCTATGAG 58.751 41.667 0.00 0.00 0.00 2.90
390 745 5.241403 TGCTTCTTGTTTTCCCTCTATGA 57.759 39.130 0.00 0.00 0.00 2.15
392 747 6.976934 TTTTGCTTCTTGTTTTCCCTCTAT 57.023 33.333 0.00 0.00 0.00 1.98
393 748 6.976934 ATTTTGCTTCTTGTTTTCCCTCTA 57.023 33.333 0.00 0.00 0.00 2.43
397 752 5.237127 CCTCAATTTTGCTTCTTGTTTTCCC 59.763 40.000 0.00 0.00 0.00 3.97
401 756 6.044682 CAGACCTCAATTTTGCTTCTTGTTT 58.955 36.000 0.00 0.00 0.00 2.83
402 757 5.127682 ACAGACCTCAATTTTGCTTCTTGTT 59.872 36.000 0.00 0.00 0.00 2.83
403 758 4.646492 ACAGACCTCAATTTTGCTTCTTGT 59.354 37.500 0.00 0.00 0.00 3.16
404 759 4.980434 CACAGACCTCAATTTTGCTTCTTG 59.020 41.667 0.00 0.00 0.00 3.02
406 761 4.464008 TCACAGACCTCAATTTTGCTTCT 58.536 39.130 0.00 0.00 0.00 2.85
407 762 4.516698 TCTCACAGACCTCAATTTTGCTTC 59.483 41.667 0.00 0.00 0.00 3.86
409 764 4.090761 TCTCACAGACCTCAATTTTGCT 57.909 40.909 0.00 0.00 0.00 3.91
410 765 4.836125 TTCTCACAGACCTCAATTTTGC 57.164 40.909 0.00 0.00 0.00 3.68
411 766 6.382869 ACTTTCTCACAGACCTCAATTTTG 57.617 37.500 0.00 0.00 0.00 2.44
412 767 6.603201 TGAACTTTCTCACAGACCTCAATTTT 59.397 34.615 0.00 0.00 0.00 1.82
413 768 6.122277 TGAACTTTCTCACAGACCTCAATTT 58.878 36.000 0.00 0.00 0.00 1.82
414 769 5.684704 TGAACTTTCTCACAGACCTCAATT 58.315 37.500 0.00 0.00 0.00 2.32
415 770 5.296151 TGAACTTTCTCACAGACCTCAAT 57.704 39.130 0.00 0.00 0.00 2.57
416 771 4.753516 TGAACTTTCTCACAGACCTCAA 57.246 40.909 0.00 0.00 0.00 3.02
417 772 4.963318 ATGAACTTTCTCACAGACCTCA 57.037 40.909 0.00 0.00 0.00 3.86
418 773 5.059833 ACAATGAACTTTCTCACAGACCTC 58.940 41.667 0.00 0.00 0.00 3.85
419 774 5.041191 ACAATGAACTTTCTCACAGACCT 57.959 39.130 0.00 0.00 0.00 3.85
422 777 6.258727 GTCTGAACAATGAACTTTCTCACAGA 59.741 38.462 0.00 0.00 0.00 3.41
423 778 6.425504 GTCTGAACAATGAACTTTCTCACAG 58.574 40.000 0.00 0.00 0.00 3.66
425 780 5.296780 TGGTCTGAACAATGAACTTTCTCAC 59.703 40.000 0.00 0.00 0.00 3.51
426 781 5.436175 TGGTCTGAACAATGAACTTTCTCA 58.564 37.500 0.00 0.00 0.00 3.27
427 782 6.377327 TTGGTCTGAACAATGAACTTTCTC 57.623 37.500 3.54 0.00 0.00 2.87
460 815 0.179032 TGAGGAGCTCGTGGCAAAAA 60.179 50.000 14.78 0.00 44.79 1.94
463 818 1.260538 ATCTGAGGAGCTCGTGGCAA 61.261 55.000 14.78 0.00 44.79 4.52
464 819 1.683707 ATCTGAGGAGCTCGTGGCA 60.684 57.895 14.78 5.65 44.79 4.92
465 820 1.227205 CATCTGAGGAGCTCGTGGC 60.227 63.158 14.78 0.55 42.19 5.01
466 821 0.102120 GACATCTGAGGAGCTCGTGG 59.898 60.000 14.78 6.65 32.35 4.94
467 822 0.102120 GGACATCTGAGGAGCTCGTG 59.898 60.000 14.78 0.07 32.35 4.35
468 823 0.323816 TGGACATCTGAGGAGCTCGT 60.324 55.000 9.04 9.04 32.35 4.18
469 824 0.385029 CTGGACATCTGAGGAGCTCG 59.615 60.000 7.83 0.00 32.35 5.03
471 826 1.272928 TGTCTGGACATCTGAGGAGCT 60.273 52.381 0.00 0.00 36.21 4.09
472 827 1.134848 GTGTCTGGACATCTGAGGAGC 60.135 57.143 6.71 0.00 43.97 4.70
473 828 1.133982 CGTGTCTGGACATCTGAGGAG 59.866 57.143 6.71 0.00 43.97 3.69
474 829 1.177401 CGTGTCTGGACATCTGAGGA 58.823 55.000 6.71 0.00 43.97 3.71
475 830 1.177401 TCGTGTCTGGACATCTGAGG 58.823 55.000 6.71 0.00 43.97 3.86
476 831 4.639135 TTATCGTGTCTGGACATCTGAG 57.361 45.455 6.71 0.00 43.97 3.35
477 832 5.400066 TTTTATCGTGTCTGGACATCTGA 57.600 39.130 6.71 6.29 43.97 3.27
478 833 6.668541 AATTTTATCGTGTCTGGACATCTG 57.331 37.500 6.71 1.37 43.97 2.90
479 834 6.094048 CCAAATTTTATCGTGTCTGGACATCT 59.906 38.462 6.71 0.00 43.97 2.90
480 835 6.128007 ACCAAATTTTATCGTGTCTGGACATC 60.128 38.462 6.71 1.03 43.97 3.06
481 836 5.710099 ACCAAATTTTATCGTGTCTGGACAT 59.290 36.000 6.71 0.00 43.97 3.06
482 837 5.067273 ACCAAATTTTATCGTGTCTGGACA 58.933 37.500 0.00 0.00 39.32 4.02
483 838 5.622770 ACCAAATTTTATCGTGTCTGGAC 57.377 39.130 0.00 0.00 0.00 4.02
484 839 5.349270 CGTACCAAATTTTATCGTGTCTGGA 59.651 40.000 0.00 0.00 0.00 3.86
485 840 5.446741 CCGTACCAAATTTTATCGTGTCTGG 60.447 44.000 0.00 0.00 0.00 3.86
486 841 5.349270 TCCGTACCAAATTTTATCGTGTCTG 59.651 40.000 0.00 0.00 0.00 3.51
487 842 5.349543 GTCCGTACCAAATTTTATCGTGTCT 59.650 40.000 0.00 0.00 0.00 3.41
488 843 5.120519 TGTCCGTACCAAATTTTATCGTGTC 59.879 40.000 0.00 0.00 0.00 3.67
489 844 4.996122 TGTCCGTACCAAATTTTATCGTGT 59.004 37.500 0.00 0.00 0.00 4.49
490 845 5.533533 TGTCCGTACCAAATTTTATCGTG 57.466 39.130 0.00 0.00 0.00 4.35
491 846 5.005971 CGATGTCCGTACCAAATTTTATCGT 59.994 40.000 0.00 0.00 31.80 3.73
492 847 5.428770 CGATGTCCGTACCAAATTTTATCG 58.571 41.667 0.00 0.00 0.00 2.92
493 848 5.202640 GCGATGTCCGTACCAAATTTTATC 58.797 41.667 0.00 0.00 41.15 1.75
494 849 4.636648 TGCGATGTCCGTACCAAATTTTAT 59.363 37.500 0.00 0.00 41.15 1.40
495 850 4.001652 TGCGATGTCCGTACCAAATTTTA 58.998 39.130 0.00 0.00 41.15 1.52
496 851 2.814919 TGCGATGTCCGTACCAAATTTT 59.185 40.909 0.00 0.00 41.15 1.82
497 852 2.160813 GTGCGATGTCCGTACCAAATTT 59.839 45.455 0.00 0.00 46.03 1.82
498 853 1.735571 GTGCGATGTCCGTACCAAATT 59.264 47.619 0.00 0.00 46.03 1.82
499 854 1.365699 GTGCGATGTCCGTACCAAAT 58.634 50.000 0.00 0.00 46.03 2.32
500 855 2.830264 GTGCGATGTCCGTACCAAA 58.170 52.632 0.00 0.00 46.03 3.28
501 856 4.582760 GTGCGATGTCCGTACCAA 57.417 55.556 0.00 0.00 46.03 3.67
505 860 1.245376 TGGAGTGTGCGATGTCCGTA 61.245 55.000 0.00 0.00 41.15 4.02
506 861 2.094757 TTGGAGTGTGCGATGTCCGT 62.095 55.000 0.00 0.00 41.15 4.69
507 862 0.740868 ATTGGAGTGTGCGATGTCCG 60.741 55.000 0.00 0.00 42.21 4.79
508 863 2.309528 TATTGGAGTGTGCGATGTCC 57.690 50.000 0.00 0.00 0.00 4.02
509 864 3.722147 AGATATTGGAGTGTGCGATGTC 58.278 45.455 0.00 0.00 0.00 3.06
510 865 3.827008 AGATATTGGAGTGTGCGATGT 57.173 42.857 0.00 0.00 0.00 3.06
511 866 4.571984 TGAAAGATATTGGAGTGTGCGATG 59.428 41.667 0.00 0.00 0.00 3.84
512 867 4.769688 TGAAAGATATTGGAGTGTGCGAT 58.230 39.130 0.00 0.00 0.00 4.58
513 868 4.200838 TGAAAGATATTGGAGTGTGCGA 57.799 40.909 0.00 0.00 0.00 5.10
514 869 4.333649 ACATGAAAGATATTGGAGTGTGCG 59.666 41.667 0.00 0.00 0.00 5.34
515 870 5.824904 ACATGAAAGATATTGGAGTGTGC 57.175 39.130 0.00 0.00 0.00 4.57
577 932 5.570844 GCTCCTCCTGGTGAACAGTAAATTA 60.571 44.000 0.00 0.00 46.06 1.40
578 933 4.807643 GCTCCTCCTGGTGAACAGTAAATT 60.808 45.833 0.00 0.00 46.06 1.82
579 934 3.307762 GCTCCTCCTGGTGAACAGTAAAT 60.308 47.826 0.00 0.00 46.06 1.40
580 935 2.038557 GCTCCTCCTGGTGAACAGTAAA 59.961 50.000 0.00 0.00 46.06 2.01
581 936 1.623811 GCTCCTCCTGGTGAACAGTAA 59.376 52.381 0.00 0.00 46.06 2.24
582 937 1.267121 GCTCCTCCTGGTGAACAGTA 58.733 55.000 0.00 0.00 46.06 2.74
583 938 1.484444 GGCTCCTCCTGGTGAACAGT 61.484 60.000 0.00 0.00 46.06 3.55
586 941 2.232298 CTCGGCTCCTCCTGGTGAAC 62.232 65.000 0.00 0.00 34.23 3.18
587 942 1.984570 CTCGGCTCCTCCTGGTGAA 60.985 63.158 0.00 0.00 34.23 3.18
604 959 2.504367 CGAATATTCATTTCCCGGGCT 58.496 47.619 18.49 0.00 0.00 5.19
610 965 5.755375 TCACTCTGAGCGAATATTCATTTCC 59.245 40.000 15.57 0.83 0.00 3.13
611 966 6.834959 TCACTCTGAGCGAATATTCATTTC 57.165 37.500 15.57 9.42 0.00 2.17
612 967 8.147058 ACTATCACTCTGAGCGAATATTCATTT 58.853 33.333 15.57 0.04 0.00 2.32
613 968 7.665690 ACTATCACTCTGAGCGAATATTCATT 58.334 34.615 15.57 2.53 0.00 2.57
614 969 7.225784 ACTATCACTCTGAGCGAATATTCAT 57.774 36.000 15.57 3.19 0.00 2.57
615 970 6.641169 ACTATCACTCTGAGCGAATATTCA 57.359 37.500 15.57 0.00 0.00 2.57
616 971 9.632807 AAATACTATCACTCTGAGCGAATATTC 57.367 33.333 4.19 5.30 0.00 1.75
617 972 9.988815 AAAATACTATCACTCTGAGCGAATATT 57.011 29.630 4.19 4.88 0.00 1.28
618 973 9.416794 CAAAATACTATCACTCTGAGCGAATAT 57.583 33.333 4.19 0.00 0.00 1.28
619 974 8.414003 ACAAAATACTATCACTCTGAGCGAATA 58.586 33.333 4.19 0.00 0.00 1.75
620 975 7.268586 ACAAAATACTATCACTCTGAGCGAAT 58.731 34.615 4.19 0.00 0.00 3.34
621 976 6.631016 ACAAAATACTATCACTCTGAGCGAA 58.369 36.000 4.19 0.00 0.00 4.70
622 977 6.208988 ACAAAATACTATCACTCTGAGCGA 57.791 37.500 4.19 0.39 0.00 4.93
623 978 6.893958 AACAAAATACTATCACTCTGAGCG 57.106 37.500 4.19 0.00 0.00 5.03
624 979 8.331742 GCTTAACAAAATACTATCACTCTGAGC 58.668 37.037 4.19 0.00 0.00 4.26
625 980 8.535592 CGCTTAACAAAATACTATCACTCTGAG 58.464 37.037 2.45 2.45 0.00 3.35
627 982 8.186178 ACGCTTAACAAAATACTATCACTCTG 57.814 34.615 0.00 0.00 0.00 3.35
628 983 9.517609 CTACGCTTAACAAAATACTATCACTCT 57.482 33.333 0.00 0.00 0.00 3.24
629 984 8.753175 CCTACGCTTAACAAAATACTATCACTC 58.247 37.037 0.00 0.00 0.00 3.51
636 991 9.148104 CTCTTAACCTACGCTTAACAAAATACT 57.852 33.333 0.00 0.00 0.00 2.12
637 992 8.385858 CCTCTTAACCTACGCTTAACAAAATAC 58.614 37.037 0.00 0.00 0.00 1.89
638 993 8.313292 TCCTCTTAACCTACGCTTAACAAAATA 58.687 33.333 0.00 0.00 0.00 1.40
643 998 5.010922 TGTTCCTCTTAACCTACGCTTAACA 59.989 40.000 0.00 0.00 0.00 2.41
644 999 5.473039 TGTTCCTCTTAACCTACGCTTAAC 58.527 41.667 0.00 0.00 0.00 2.01
645 1000 5.726980 TGTTCCTCTTAACCTACGCTTAA 57.273 39.130 0.00 0.00 0.00 1.85
646 1001 5.927281 ATGTTCCTCTTAACCTACGCTTA 57.073 39.130 0.00 0.00 0.00 3.09
647 1002 4.820894 ATGTTCCTCTTAACCTACGCTT 57.179 40.909 0.00 0.00 0.00 4.68
648 1003 4.820894 AATGTTCCTCTTAACCTACGCT 57.179 40.909 0.00 0.00 0.00 5.07
665 1020 4.556501 CGCACCATGTACTGACAAAAATGT 60.557 41.667 0.00 0.00 39.59 2.71
688 1051 0.249489 CAGCATGTAGGAGGGTACGC 60.249 60.000 0.77 0.77 0.00 4.42
689 1052 0.389391 CCAGCATGTAGGAGGGTACG 59.611 60.000 0.00 0.00 0.00 3.67
697 1063 2.288091 CGAGACAGATCCAGCATGTAGG 60.288 54.545 0.00 0.00 0.00 3.18
712 1078 1.021202 CCAAAAACTGGCACGAGACA 58.979 50.000 0.00 0.00 38.76 3.41
724 1094 1.792118 AACCCGCTCTCGCCAAAAAC 61.792 55.000 0.00 0.00 0.00 2.43
885 1261 1.535028 CGTTGCTGTGCCTATTGTGAA 59.465 47.619 0.00 0.00 0.00 3.18
934 1311 2.607187 GTGCTGCTCGCTAGTTTAGAA 58.393 47.619 0.00 0.00 40.11 2.10
936 1313 1.134965 AGGTGCTGCTCGCTAGTTTAG 60.135 52.381 0.00 0.00 40.11 1.85
937 1314 0.895530 AGGTGCTGCTCGCTAGTTTA 59.104 50.000 0.00 0.00 40.11 2.01
938 1315 0.035458 AAGGTGCTGCTCGCTAGTTT 59.965 50.000 0.00 0.00 40.11 2.66
939 1316 0.390472 GAAGGTGCTGCTCGCTAGTT 60.390 55.000 0.00 0.00 40.11 2.24
940 1317 1.216710 GAAGGTGCTGCTCGCTAGT 59.783 57.895 0.00 0.00 40.11 2.57
946 1323 2.495669 AGAACTAGAGAAGGTGCTGCTC 59.504 50.000 0.00 0.00 36.43 4.26
994 1374 0.179084 ACCATGGTCGCCATTACTCG 60.179 55.000 13.00 0.00 42.23 4.18
1015 1395 1.374758 CGGCGAAGGAGCTCAAAGT 60.375 57.895 17.19 0.00 37.29 2.66
1105 1485 3.567473 GTGAAAGCTCACCTCGGC 58.433 61.111 0.00 0.00 45.41 5.54
1295 1689 2.036256 GTCATGGGCTTGGGTGCT 59.964 61.111 0.00 0.00 0.00 4.40
1677 2071 0.921347 CCACAGCGCTACATTACGTC 59.079 55.000 10.99 0.00 0.00 4.34
1783 2200 9.740239 CCATGAAAACAACCTTAATATGAGATG 57.260 33.333 0.00 0.00 0.00 2.90
1791 2208 6.670695 AGAAGCCATGAAAACAACCTTAAT 57.329 33.333 0.00 0.00 0.00 1.40
1824 2241 3.058708 CACACTCGTGGACTCGTACTAAA 60.059 47.826 1.77 0.00 39.64 1.85
1880 4047 1.487142 TCAAGAGGACGGTGGTGAAAA 59.513 47.619 0.00 0.00 0.00 2.29
1900 4067 9.261180 CATCGTCATCAAATATACAGTTAACCT 57.739 33.333 0.88 0.00 0.00 3.50
1938 6454 1.284982 AAGCGCTTGCGTCTGTACTG 61.285 55.000 24.40 0.00 45.69 2.74
1957 6473 9.636789 AGAAGTGGGTGTATATGCGTATATATA 57.363 33.333 15.06 10.50 34.98 0.86
1961 6477 7.949690 ATAGAAGTGGGTGTATATGCGTATA 57.050 36.000 1.29 1.29 0.00 1.47
1976 6496 6.649436 CGTGTGTGCATTTATATAGAAGTGG 58.351 40.000 4.97 0.00 0.00 4.00
1981 6501 4.965042 CGCGTGTGTGCATTTATATAGA 57.035 40.909 0.00 0.00 34.15 1.98
2002 6523 0.390472 CTCGAAAGTGGAGACAGGGC 60.390 60.000 0.00 0.00 44.46 5.19
2022 6558 4.471904 TGATGATGTGGTAACTCAGTCC 57.528 45.455 0.00 0.00 44.40 3.85
2031 6567 2.295909 TCGATCGCATGATGATGTGGTA 59.704 45.455 11.09 0.00 40.05 3.25
2032 6568 1.069049 TCGATCGCATGATGATGTGGT 59.931 47.619 11.09 0.00 40.05 4.16
2033 6569 1.725164 CTCGATCGCATGATGATGTGG 59.275 52.381 11.09 0.00 40.05 4.17
2046 6582 5.328691 GTTCTATGATAGCTTCCTCGATCG 58.671 45.833 9.36 9.36 0.00 3.69
2089 6625 1.401539 GCGTTCAGTGGGAGAAAATGC 60.402 52.381 0.00 0.00 0.00 3.56
2093 6629 0.179234 TGTGCGTTCAGTGGGAGAAA 59.821 50.000 0.00 0.00 0.00 2.52
2114 6650 6.544564 CAGGATTTATTTTAGGCCTTTCGGTA 59.455 38.462 12.58 0.00 0.00 4.02
2138 6674 0.881118 GAGGGTGCTCGCATTTTTCA 59.119 50.000 5.59 0.00 0.00 2.69
2159 6695 3.025322 AGCACATACTAGCCAGAGAGT 57.975 47.619 0.00 0.00 0.00 3.24
2164 6700 3.801698 ACATGAAGCACATACTAGCCAG 58.198 45.455 0.00 0.00 37.46 4.85
2180 6716 7.220740 TGTAATGGATTAGCGGATAAACATGA 58.779 34.615 0.00 0.00 30.14 3.07
2266 6802 9.771534 CCCAAATTTAATTTTCAGGTGACTTAA 57.228 29.630 0.00 0.00 40.21 1.85
2273 6811 8.085909 CGACTAACCCAAATTTAATTTTCAGGT 58.914 33.333 0.00 5.62 32.11 4.00
2299 6837 8.797266 AAACAGAAATCAACGGTCTAAAAATC 57.203 30.769 0.00 0.00 0.00 2.17
2308 6846 8.194769 ACAAATCTTAAAACAGAAATCAACGGT 58.805 29.630 0.00 0.00 0.00 4.83
2309 6847 8.479280 CACAAATCTTAAAACAGAAATCAACGG 58.521 33.333 0.00 0.00 0.00 4.44
2349 6963 2.289694 CCCAAGACAACCCACAGACTAG 60.290 54.545 0.00 0.00 0.00 2.57
2378 6992 4.264172 ACTGGCCCAAATATGGTTCAGTAA 60.264 41.667 14.49 0.00 46.78 2.24
2380 6994 2.042979 ACTGGCCCAAATATGGTTCAGT 59.957 45.455 0.00 11.85 46.01 3.41
2383 6997 2.733956 TGACTGGCCCAAATATGGTTC 58.266 47.619 0.00 0.00 46.01 3.62
2385 6999 2.917713 TTGACTGGCCCAAATATGGT 57.082 45.000 0.00 0.00 46.01 3.55
2386 7000 7.898365 GTTAAGAATTGACTGGCCCAAATATGG 60.898 40.741 0.00 0.00 37.78 2.74
2397 7018 1.743394 GGCCCGTTAAGAATTGACTGG 59.257 52.381 0.00 0.00 40.98 4.00
2431 7052 4.702131 AGAAATAAGAAGGCTTTGTCGCAT 59.298 37.500 0.00 0.00 35.56 4.73
2434 7055 4.938226 AGGAGAAATAAGAAGGCTTTGTCG 59.062 41.667 0.00 0.00 35.56 4.35
2439 7060 6.547402 ACTCAAAGGAGAAATAAGAAGGCTT 58.453 36.000 0.00 0.00 44.26 4.35
2441 7062 6.825944 AACTCAAAGGAGAAATAAGAAGGC 57.174 37.500 0.00 0.00 44.26 4.35
2515 8658 6.567687 ACCCACAAAAGAAAAACAAAAAGG 57.432 33.333 0.00 0.00 0.00 3.11
2519 8662 9.899226 CAAAAATACCCACAAAAGAAAAACAAA 57.101 25.926 0.00 0.00 0.00 2.83
2521 8664 7.121315 CCCAAAAATACCCACAAAAGAAAAACA 59.879 33.333 0.00 0.00 0.00 2.83
2522 8665 7.337184 TCCCAAAAATACCCACAAAAGAAAAAC 59.663 33.333 0.00 0.00 0.00 2.43
2523 8666 7.402862 TCCCAAAAATACCCACAAAAGAAAAA 58.597 30.769 0.00 0.00 0.00 1.94
2524 8667 6.958767 TCCCAAAAATACCCACAAAAGAAAA 58.041 32.000 0.00 0.00 0.00 2.29
2534 8677 4.133526 TCCAACATCCCAAAAATACCCA 57.866 40.909 0.00 0.00 0.00 4.51
2593 10582 3.928375 ACAGAATCATGAAATTTTGGCGC 59.072 39.130 0.00 0.00 0.00 6.53
2595 10584 7.605410 AATCACAGAATCATGAAATTTTGGC 57.395 32.000 0.00 0.00 0.00 4.52
2650 10641 2.270959 TGCACACAACTTTGCACCA 58.729 47.368 0.00 0.00 43.79 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.