Multiple sequence alignment - TraesCS1B01G326800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G326800 chr1B 100.000 2102 0 0 565 2666 553025683 553023582 0.000000e+00 3882
1 TraesCS1B01G326800 chr1B 88.292 1042 82 22 726 1747 553136453 553135432 0.000000e+00 1212
2 TraesCS1B01G326800 chr1B 100.000 254 0 0 1 254 553026247 553025994 1.120000e-128 470
3 TraesCS1B01G326800 chr1B 84.874 357 39 13 1944 2296 341209335 341209680 1.960000e-91 346
4 TraesCS1B01G326800 chr1D 92.683 1517 61 16 723 2213 410472537 410471045 0.000000e+00 2141
5 TraesCS1B01G326800 chr1D 93.679 886 44 7 863 1747 410483031 410482157 0.000000e+00 1315
6 TraesCS1B01G326800 chr1D 87.344 1043 81 34 723 1747 410491376 410490367 0.000000e+00 1147
7 TraesCS1B01G326800 chr1D 93.333 390 23 3 2277 2666 410471047 410470661 8.280000e-160 573
8 TraesCS1B01G326800 chr1A 90.663 1071 61 10 715 1779 506309145 506308108 0.000000e+00 1387
9 TraesCS1B01G326800 chr1A 88.602 1044 86 17 720 1747 506493943 506492917 0.000000e+00 1238
10 TraesCS1B01G326800 chr1A 88.303 1043 81 20 723 1747 506474459 506473440 0.000000e+00 1212
11 TraesCS1B01G326800 chr1A 87.144 1019 89 29 723 1722 506489606 506488611 0.000000e+00 1118
12 TraesCS1B01G326800 chr1A 90.028 712 49 13 1047 1747 506481145 506480445 0.000000e+00 902
13 TraesCS1B01G326800 chr1A 92.295 597 35 5 1187 1779 506288735 506288146 0.000000e+00 837
14 TraesCS1B01G326800 chr1A 91.189 488 20 5 710 1194 506294550 506294083 2.240000e-180 641
15 TraesCS1B01G326800 chr1A 95.745 94 4 0 2573 2666 506287952 506287859 4.600000e-33 152
16 TraesCS1B01G326800 chr1A 95.745 94 4 0 2573 2666 506307914 506307821 4.600000e-33 152
17 TraesCS1B01G326800 chr3D 81.104 471 63 9 1847 2299 141341895 141341433 1.170000e-93 353
18 TraesCS1B01G326800 chr3D 80.556 468 65 10 1847 2296 120722766 120723225 1.180000e-88 337
19 TraesCS1B01G326800 chr6D 80.679 471 65 9 1847 2299 6891511 6891049 2.540000e-90 342
20 TraesCS1B01G326800 chr7D 80.508 472 64 11 1847 2299 150620 150158 1.180000e-88 337
21 TraesCS1B01G326800 chr7D 80.297 472 65 11 1847 2299 264965213 264964751 5.500000e-87 331
22 TraesCS1B01G326800 chr7D 80.085 472 66 11 1847 2299 264960573 264960111 2.560000e-85 326
23 TraesCS1B01G326800 chr2D 80.384 469 64 11 1847 2296 628812300 628812759 5.500000e-87 331
24 TraesCS1B01G326800 chr6A 79.536 474 65 14 1847 2299 270784107 270783645 2.580000e-80 309
25 TraesCS1B01G326800 chr6A 79.114 474 67 14 1847 2299 391448607 391448145 5.580000e-77 298
26 TraesCS1B01G326800 chrUn 79.193 471 63 16 1847 2296 259645370 259645826 7.220000e-76 294
27 TraesCS1B01G326800 chr7A 78.947 475 68 15 1847 2299 619562897 619562433 7.220000e-76 294


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G326800 chr1B 553023582 553026247 2665 True 2176.0 3882 100.000 1 2666 2 chr1B.!!$R2 2665
1 TraesCS1B01G326800 chr1B 553135432 553136453 1021 True 1212.0 1212 88.292 726 1747 1 chr1B.!!$R1 1021
2 TraesCS1B01G326800 chr1D 410470661 410472537 1876 True 1357.0 2141 93.008 723 2666 2 chr1D.!!$R3 1943
3 TraesCS1B01G326800 chr1D 410482157 410483031 874 True 1315.0 1315 93.679 863 1747 1 chr1D.!!$R1 884
4 TraesCS1B01G326800 chr1D 410490367 410491376 1009 True 1147.0 1147 87.344 723 1747 1 chr1D.!!$R2 1024
5 TraesCS1B01G326800 chr1A 506473440 506474459 1019 True 1212.0 1212 88.303 723 1747 1 chr1A.!!$R2 1024
6 TraesCS1B01G326800 chr1A 506488611 506493943 5332 True 1178.0 1238 87.873 720 1747 2 chr1A.!!$R6 1027
7 TraesCS1B01G326800 chr1A 506480445 506481145 700 True 902.0 902 90.028 1047 1747 1 chr1A.!!$R3 700
8 TraesCS1B01G326800 chr1A 506307821 506309145 1324 True 769.5 1387 93.204 715 2666 2 chr1A.!!$R5 1951
9 TraesCS1B01G326800 chr1A 506287859 506288735 876 True 494.5 837 94.020 1187 2666 2 chr1A.!!$R4 1479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.03496 GGTCCTTCTTCTGCCCCTTC 60.035 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 1722 0.17576 AAAGAGAATCCGCAGCGCTA 59.824 50.0 10.99 0.0 33.66 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.320673 CGGCTTTCTTCTACACCTTCT 57.679 47.619 0.00 0.00 0.00 2.85
21 22 3.665190 CGGCTTTCTTCTACACCTTCTT 58.335 45.455 0.00 0.00 0.00 2.52
22 23 4.065789 CGGCTTTCTTCTACACCTTCTTT 58.934 43.478 0.00 0.00 0.00 2.52
23 24 4.515567 CGGCTTTCTTCTACACCTTCTTTT 59.484 41.667 0.00 0.00 0.00 2.27
24 25 5.334182 CGGCTTTCTTCTACACCTTCTTTTC 60.334 44.000 0.00 0.00 0.00 2.29
25 26 5.048643 GGCTTTCTTCTACACCTTCTTTTCC 60.049 44.000 0.00 0.00 0.00 3.13
26 27 5.334182 GCTTTCTTCTACACCTTCTTTTCCG 60.334 44.000 0.00 0.00 0.00 4.30
27 28 3.660865 TCTTCTACACCTTCTTTTCCGC 58.339 45.455 0.00 0.00 0.00 5.54
28 29 2.467566 TCTACACCTTCTTTTCCGCC 57.532 50.000 0.00 0.00 0.00 6.13
29 30 1.695242 TCTACACCTTCTTTTCCGCCA 59.305 47.619 0.00 0.00 0.00 5.69
30 31 2.076863 CTACACCTTCTTTTCCGCCAG 58.923 52.381 0.00 0.00 0.00 4.85
31 32 1.172812 ACACCTTCTTTTCCGCCAGC 61.173 55.000 0.00 0.00 0.00 4.85
32 33 1.603739 ACCTTCTTTTCCGCCAGCC 60.604 57.895 0.00 0.00 0.00 4.85
33 34 2.343426 CCTTCTTTTCCGCCAGCCC 61.343 63.158 0.00 0.00 0.00 5.19
34 35 2.282887 TTCTTTTCCGCCAGCCCC 60.283 61.111 0.00 0.00 0.00 5.80
35 36 2.771328 CTTCTTTTCCGCCAGCCCCT 62.771 60.000 0.00 0.00 0.00 4.79
36 37 2.751837 CTTTTCCGCCAGCCCCTC 60.752 66.667 0.00 0.00 0.00 4.30
37 38 4.360405 TTTTCCGCCAGCCCCTCC 62.360 66.667 0.00 0.00 0.00 4.30
42 43 4.479993 CGCCAGCCCCTCCTCTTG 62.480 72.222 0.00 0.00 0.00 3.02
43 44 4.120755 GCCAGCCCCTCCTCTTGG 62.121 72.222 0.00 0.00 0.00 3.61
44 45 4.120755 CCAGCCCCTCCTCTTGGC 62.121 72.222 0.00 0.00 45.70 4.52
45 46 4.120755 CAGCCCCTCCTCTTGGCC 62.121 72.222 0.00 0.00 46.55 5.36
48 49 2.770048 CCCCTCCTCTTGGCCGAT 60.770 66.667 0.00 0.00 0.00 4.18
49 50 2.378634 CCCCTCCTCTTGGCCGATT 61.379 63.158 0.00 0.00 0.00 3.34
50 51 1.147153 CCCTCCTCTTGGCCGATTC 59.853 63.158 0.00 0.00 0.00 2.52
51 52 1.147153 CCTCCTCTTGGCCGATTCC 59.853 63.158 0.00 0.00 0.00 3.01
52 53 1.341156 CCTCCTCTTGGCCGATTCCT 61.341 60.000 0.00 0.00 0.00 3.36
53 54 0.105778 CTCCTCTTGGCCGATTCCTC 59.894 60.000 0.00 0.00 0.00 3.71
54 55 1.227380 CCTCTTGGCCGATTCCTCG 60.227 63.158 0.00 0.00 44.62 4.63
55 56 1.517832 CTCTTGGCCGATTCCTCGT 59.482 57.895 0.00 0.00 43.49 4.18
56 57 0.108138 CTCTTGGCCGATTCCTCGTT 60.108 55.000 0.00 0.00 43.49 3.85
57 58 0.391130 TCTTGGCCGATTCCTCGTTG 60.391 55.000 0.00 0.00 43.49 4.10
58 59 0.391130 CTTGGCCGATTCCTCGTTGA 60.391 55.000 0.00 0.00 43.49 3.18
59 60 0.391130 TTGGCCGATTCCTCGTTGAG 60.391 55.000 0.00 0.00 43.49 3.02
60 61 2.174319 GGCCGATTCCTCGTTGAGC 61.174 63.158 0.00 0.00 43.49 4.26
61 62 2.174319 GCCGATTCCTCGTTGAGCC 61.174 63.158 0.00 0.00 43.49 4.70
62 63 1.218047 CCGATTCCTCGTTGAGCCA 59.782 57.895 0.00 0.00 43.49 4.75
63 64 1.084370 CCGATTCCTCGTTGAGCCAC 61.084 60.000 0.00 0.00 43.49 5.01
64 65 1.413767 CGATTCCTCGTTGAGCCACG 61.414 60.000 0.00 0.00 40.07 4.94
65 66 1.696832 GATTCCTCGTTGAGCCACGC 61.697 60.000 0.00 0.00 40.14 5.34
66 67 4.717629 TCCTCGTTGAGCCACGCG 62.718 66.667 3.53 3.53 40.14 6.01
67 68 4.717629 CCTCGTTGAGCCACGCGA 62.718 66.667 15.93 0.00 40.14 5.87
68 69 3.175240 CTCGTTGAGCCACGCGAG 61.175 66.667 15.93 4.16 43.42 5.03
82 83 4.056125 CGAGCTCTGCCGGTGTGA 62.056 66.667 12.85 0.00 0.00 3.58
83 84 2.125753 GAGCTCTGCCGGTGTGAG 60.126 66.667 6.43 9.62 0.00 3.51
85 86 4.385405 GCTCTGCCGGTGTGAGCT 62.385 66.667 26.50 0.00 46.69 4.09
86 87 2.433838 CTCTGCCGGTGTGAGCTG 60.434 66.667 1.90 0.00 0.00 4.24
87 88 4.687215 TCTGCCGGTGTGAGCTGC 62.687 66.667 1.90 0.00 0.00 5.25
94 95 4.664677 GTGTGAGCTGCGACCGGT 62.665 66.667 6.92 6.92 0.00 5.28
95 96 4.357947 TGTGAGCTGCGACCGGTC 62.358 66.667 25.28 25.28 0.00 4.79
98 99 4.070552 GAGCTGCGACCGGTCCTT 62.071 66.667 28.52 9.67 0.00 3.36
99 100 3.991536 GAGCTGCGACCGGTCCTTC 62.992 68.421 28.52 17.59 0.00 3.46
100 101 4.070552 GCTGCGACCGGTCCTTCT 62.071 66.667 28.52 0.00 0.00 2.85
101 102 2.657237 CTGCGACCGGTCCTTCTT 59.343 61.111 28.52 0.00 0.00 2.52
102 103 1.446272 CTGCGACCGGTCCTTCTTC 60.446 63.158 28.52 11.10 0.00 2.87
103 104 1.878656 CTGCGACCGGTCCTTCTTCT 61.879 60.000 28.52 0.00 0.00 2.85
104 105 1.446272 GCGACCGGTCCTTCTTCTG 60.446 63.158 28.52 12.90 0.00 3.02
105 106 1.446272 CGACCGGTCCTTCTTCTGC 60.446 63.158 28.52 0.31 0.00 4.26
106 107 1.079057 GACCGGTCCTTCTTCTGCC 60.079 63.158 24.75 0.00 0.00 4.85
107 108 2.269241 CCGGTCCTTCTTCTGCCC 59.731 66.667 0.00 0.00 0.00 5.36
108 109 2.269241 CGGTCCTTCTTCTGCCCC 59.731 66.667 0.00 0.00 0.00 5.80
109 110 2.294078 CGGTCCTTCTTCTGCCCCT 61.294 63.158 0.00 0.00 0.00 4.79
110 111 1.842381 CGGTCCTTCTTCTGCCCCTT 61.842 60.000 0.00 0.00 0.00 3.95
111 112 0.034960 GGTCCTTCTTCTGCCCCTTC 60.035 60.000 0.00 0.00 0.00 3.46
112 113 0.988063 GTCCTTCTTCTGCCCCTTCT 59.012 55.000 0.00 0.00 0.00 2.85
113 114 1.352687 GTCCTTCTTCTGCCCCTTCTT 59.647 52.381 0.00 0.00 0.00 2.52
114 115 1.352352 TCCTTCTTCTGCCCCTTCTTG 59.648 52.381 0.00 0.00 0.00 3.02
115 116 1.615384 CCTTCTTCTGCCCCTTCTTGG 60.615 57.143 0.00 0.00 0.00 3.61
123 124 4.489771 CCCTTCTTGGCCGCGGAT 62.490 66.667 33.48 0.00 0.00 4.18
124 125 2.897350 CCTTCTTGGCCGCGGATC 60.897 66.667 33.48 20.75 0.00 3.36
125 126 3.264897 CTTCTTGGCCGCGGATCG 61.265 66.667 33.48 13.74 38.08 3.69
154 155 3.145551 CCGGATCGTCGGGGTTCT 61.146 66.667 0.00 0.00 45.78 3.01
155 156 2.718073 CCGGATCGTCGGGGTTCTT 61.718 63.158 0.00 0.00 45.78 2.52
156 157 1.226888 CGGATCGTCGGGGTTCTTC 60.227 63.158 0.00 0.00 0.00 2.87
157 158 1.226888 GGATCGTCGGGGTTCTTCG 60.227 63.158 0.00 0.00 0.00 3.79
158 159 1.509923 GATCGTCGGGGTTCTTCGT 59.490 57.895 0.00 0.00 0.00 3.85
159 160 0.801067 GATCGTCGGGGTTCTTCGTG 60.801 60.000 0.00 0.00 0.00 4.35
160 161 2.221906 ATCGTCGGGGTTCTTCGTGG 62.222 60.000 0.00 0.00 0.00 4.94
161 162 2.741211 GTCGGGGTTCTTCGTGGC 60.741 66.667 0.00 0.00 0.00 5.01
162 163 4.367023 TCGGGGTTCTTCGTGGCG 62.367 66.667 0.00 0.00 0.00 5.69
180 181 4.195334 CCGCCCATGGAGAAGGGG 62.195 72.222 15.22 10.46 45.58 4.79
182 183 3.023735 GCCCATGGAGAAGGGGGT 61.024 66.667 15.22 0.00 45.58 4.95
183 184 3.010144 CCCATGGAGAAGGGGGTG 58.990 66.667 15.22 0.00 41.58 4.61
184 185 2.693871 CCCATGGAGAAGGGGGTGG 61.694 68.421 15.22 0.00 41.58 4.61
185 186 1.619363 CCATGGAGAAGGGGGTGGA 60.619 63.158 5.56 0.00 0.00 4.02
186 187 1.639635 CCATGGAGAAGGGGGTGGAG 61.640 65.000 5.56 0.00 0.00 3.86
187 188 1.308216 ATGGAGAAGGGGGTGGAGG 60.308 63.158 0.00 0.00 0.00 4.30
188 189 2.692741 GGAGAAGGGGGTGGAGGG 60.693 72.222 0.00 0.00 0.00 4.30
189 190 3.412408 GAGAAGGGGGTGGAGGGC 61.412 72.222 0.00 0.00 0.00 5.19
198 199 3.647771 GTGGAGGGCGGGAGGTTT 61.648 66.667 0.00 0.00 0.00 3.27
199 200 2.856988 TGGAGGGCGGGAGGTTTT 60.857 61.111 0.00 0.00 0.00 2.43
200 201 2.439245 GGAGGGCGGGAGGTTTTT 59.561 61.111 0.00 0.00 0.00 1.94
220 221 5.789643 TTTTGAGAATGAAGGGAAAGTGG 57.210 39.130 0.00 0.00 0.00 4.00
221 222 3.439857 TGAGAATGAAGGGAAAGTGGG 57.560 47.619 0.00 0.00 0.00 4.61
222 223 2.095461 GAGAATGAAGGGAAAGTGGGC 58.905 52.381 0.00 0.00 0.00 5.36
223 224 1.428912 AGAATGAAGGGAAAGTGGGCA 59.571 47.619 0.00 0.00 0.00 5.36
224 225 2.043526 AGAATGAAGGGAAAGTGGGCAT 59.956 45.455 0.00 0.00 0.00 4.40
225 226 2.629017 ATGAAGGGAAAGTGGGCATT 57.371 45.000 0.00 0.00 0.00 3.56
226 227 1.631405 TGAAGGGAAAGTGGGCATTG 58.369 50.000 0.00 0.00 0.00 2.82
227 228 1.133199 TGAAGGGAAAGTGGGCATTGT 60.133 47.619 0.00 0.00 0.00 2.71
228 229 1.273327 GAAGGGAAAGTGGGCATTGTG 59.727 52.381 0.00 0.00 0.00 3.33
229 230 0.188342 AGGGAAAGTGGGCATTGTGT 59.812 50.000 0.00 0.00 0.00 3.72
230 231 0.318120 GGGAAAGTGGGCATTGTGTG 59.682 55.000 0.00 0.00 0.00 3.82
589 590 3.286329 GGTCTAAATTTAGGCCGGGAA 57.714 47.619 28.33 4.95 44.73 3.97
590 591 3.828921 GGTCTAAATTTAGGCCGGGAAT 58.171 45.455 28.33 0.00 44.73 3.01
591 592 3.568430 GGTCTAAATTTAGGCCGGGAATG 59.432 47.826 28.33 0.89 44.73 2.67
592 593 4.204799 GTCTAAATTTAGGCCGGGAATGT 58.795 43.478 22.11 0.00 29.23 2.71
593 594 4.036380 GTCTAAATTTAGGCCGGGAATGTG 59.964 45.833 22.11 0.00 29.23 3.21
594 595 1.111277 AATTTAGGCCGGGAATGTGC 58.889 50.000 2.18 0.00 0.00 4.57
595 596 0.755327 ATTTAGGCCGGGAATGTGCC 60.755 55.000 2.18 0.00 45.70 5.01
603 604 3.792716 GGGAATGTGCCGAAAACAG 57.207 52.632 0.00 0.00 0.00 3.16
604 605 1.243902 GGGAATGTGCCGAAAACAGA 58.756 50.000 0.00 0.00 0.00 3.41
605 606 1.068541 GGGAATGTGCCGAAAACAGAC 60.069 52.381 0.00 0.00 0.00 3.51
606 607 1.606668 GGAATGTGCCGAAAACAGACA 59.393 47.619 0.00 0.00 0.00 3.41
607 608 2.350772 GGAATGTGCCGAAAACAGACAG 60.351 50.000 0.00 0.00 0.00 3.51
608 609 2.254546 ATGTGCCGAAAACAGACAGA 57.745 45.000 0.00 0.00 0.00 3.41
609 610 2.031258 TGTGCCGAAAACAGACAGAA 57.969 45.000 0.00 0.00 0.00 3.02
610 611 2.360844 TGTGCCGAAAACAGACAGAAA 58.639 42.857 0.00 0.00 0.00 2.52
611 612 2.750166 TGTGCCGAAAACAGACAGAAAA 59.250 40.909 0.00 0.00 0.00 2.29
612 613 3.380004 TGTGCCGAAAACAGACAGAAAAT 59.620 39.130 0.00 0.00 0.00 1.82
613 614 4.142271 TGTGCCGAAAACAGACAGAAAATT 60.142 37.500 0.00 0.00 0.00 1.82
614 615 4.207019 GTGCCGAAAACAGACAGAAAATTG 59.793 41.667 0.00 0.00 0.00 2.32
615 616 4.097135 TGCCGAAAACAGACAGAAAATTGA 59.903 37.500 0.00 0.00 0.00 2.57
616 617 4.441087 GCCGAAAACAGACAGAAAATTGAC 59.559 41.667 0.00 0.00 0.00 3.18
617 618 5.577835 CCGAAAACAGACAGAAAATTGACA 58.422 37.500 0.00 0.00 0.00 3.58
618 619 6.208644 CCGAAAACAGACAGAAAATTGACAT 58.791 36.000 0.00 0.00 0.00 3.06
619 620 6.697019 CCGAAAACAGACAGAAAATTGACATT 59.303 34.615 0.00 0.00 0.00 2.71
620 621 7.222611 CCGAAAACAGACAGAAAATTGACATTT 59.777 33.333 0.00 0.00 33.72 2.32
621 622 8.594687 CGAAAACAGACAGAAAATTGACATTTT 58.405 29.630 0.00 0.00 43.97 1.82
646 647 9.893634 TTATATTTCTTTATCCTCAAACGGACA 57.106 29.630 0.00 0.00 35.52 4.02
647 648 5.934935 TTTCTTTATCCTCAAACGGACAC 57.065 39.130 0.00 0.00 35.52 3.67
649 650 2.373540 TTATCCTCAAACGGACACGG 57.626 50.000 0.00 0.00 46.48 4.94
650 651 0.533491 TATCCTCAAACGGACACGGG 59.467 55.000 0.00 0.00 46.48 5.28
651 652 2.798148 ATCCTCAAACGGACACGGGC 62.798 60.000 0.00 0.00 46.48 6.13
652 653 3.411351 CTCAAACGGACACGGGCG 61.411 66.667 0.00 0.00 46.48 6.13
653 654 4.973055 TCAAACGGACACGGGCGG 62.973 66.667 0.00 0.00 46.48 6.13
654 655 4.973055 CAAACGGACACGGGCGGA 62.973 66.667 0.00 0.00 46.48 5.54
655 656 4.974989 AAACGGACACGGGCGGAC 62.975 66.667 0.00 0.00 46.48 4.79
659 660 4.832608 GGACACGGGCGGACCATC 62.833 72.222 0.00 0.00 40.22 3.51
660 661 3.771160 GACACGGGCGGACCATCT 61.771 66.667 0.00 0.00 40.22 2.90
661 662 3.718210 GACACGGGCGGACCATCTC 62.718 68.421 0.00 0.00 40.22 2.75
662 663 4.873129 CACGGGCGGACCATCTCG 62.873 72.222 0.00 1.80 40.22 4.04
671 672 3.461773 ACCATCTCGGGTCCTGCG 61.462 66.667 0.00 0.00 35.96 5.18
672 673 3.461773 CCATCTCGGGTCCTGCGT 61.462 66.667 0.00 0.00 0.00 5.24
673 674 2.579201 CATCTCGGGTCCTGCGTT 59.421 61.111 0.00 0.00 0.00 4.84
674 675 1.811266 CATCTCGGGTCCTGCGTTG 60.811 63.158 0.00 0.00 0.00 4.10
675 676 1.982395 ATCTCGGGTCCTGCGTTGA 60.982 57.895 0.00 0.00 0.00 3.18
676 677 1.541310 ATCTCGGGTCCTGCGTTGAA 61.541 55.000 0.00 0.00 0.00 2.69
677 678 1.738099 CTCGGGTCCTGCGTTGAAG 60.738 63.158 0.00 0.00 0.00 3.02
678 679 2.030562 CGGGTCCTGCGTTGAAGT 59.969 61.111 0.00 0.00 0.00 3.01
679 680 1.597027 CGGGTCCTGCGTTGAAGTT 60.597 57.895 0.00 0.00 0.00 2.66
680 681 1.566018 CGGGTCCTGCGTTGAAGTTC 61.566 60.000 0.00 0.00 0.00 3.01
681 682 1.566018 GGGTCCTGCGTTGAAGTTCG 61.566 60.000 0.00 0.00 0.00 3.95
686 687 3.027292 GCGTTGAAGTTCGCCCAA 58.973 55.556 0.00 0.00 45.54 4.12
687 688 1.579429 GCGTTGAAGTTCGCCCAAT 59.421 52.632 0.00 0.00 45.54 3.16
688 689 0.454452 GCGTTGAAGTTCGCCCAATC 60.454 55.000 0.00 0.00 45.54 2.67
689 690 1.156736 CGTTGAAGTTCGCCCAATCT 58.843 50.000 0.00 0.00 0.00 2.40
690 691 1.128692 CGTTGAAGTTCGCCCAATCTC 59.871 52.381 0.00 0.00 0.00 2.75
691 692 1.468914 GTTGAAGTTCGCCCAATCTCC 59.531 52.381 0.00 0.00 0.00 3.71
692 693 0.984230 TGAAGTTCGCCCAATCTCCT 59.016 50.000 0.00 0.00 0.00 3.69
693 694 2.184533 TGAAGTTCGCCCAATCTCCTA 58.815 47.619 0.00 0.00 0.00 2.94
694 695 2.093658 TGAAGTTCGCCCAATCTCCTAC 60.094 50.000 0.00 0.00 0.00 3.18
695 696 1.867363 AGTTCGCCCAATCTCCTACT 58.133 50.000 0.00 0.00 0.00 2.57
696 697 3.028094 AGTTCGCCCAATCTCCTACTA 57.972 47.619 0.00 0.00 0.00 1.82
697 698 2.694109 AGTTCGCCCAATCTCCTACTAC 59.306 50.000 0.00 0.00 0.00 2.73
698 699 2.694109 GTTCGCCCAATCTCCTACTACT 59.306 50.000 0.00 0.00 0.00 2.57
699 700 2.307768 TCGCCCAATCTCCTACTACTG 58.692 52.381 0.00 0.00 0.00 2.74
700 701 2.032620 CGCCCAATCTCCTACTACTGT 58.967 52.381 0.00 0.00 0.00 3.55
701 702 2.034812 CGCCCAATCTCCTACTACTGTC 59.965 54.545 0.00 0.00 0.00 3.51
702 703 2.365941 GCCCAATCTCCTACTACTGTCC 59.634 54.545 0.00 0.00 0.00 4.02
703 704 3.917300 CCCAATCTCCTACTACTGTCCT 58.083 50.000 0.00 0.00 0.00 3.85
704 705 4.691935 GCCCAATCTCCTACTACTGTCCTA 60.692 50.000 0.00 0.00 0.00 2.94
705 706 4.828387 CCCAATCTCCTACTACTGTCCTAC 59.172 50.000 0.00 0.00 0.00 3.18
706 707 5.446860 CCAATCTCCTACTACTGTCCTACA 58.553 45.833 0.00 0.00 0.00 2.74
707 708 5.892119 CCAATCTCCTACTACTGTCCTACAA 59.108 44.000 0.00 0.00 0.00 2.41
708 709 6.183360 CCAATCTCCTACTACTGTCCTACAAC 60.183 46.154 0.00 0.00 0.00 3.32
709 710 5.775813 TCTCCTACTACTGTCCTACAACT 57.224 43.478 0.00 0.00 0.00 3.16
710 711 6.881067 TCTCCTACTACTGTCCTACAACTA 57.119 41.667 0.00 0.00 0.00 2.24
711 712 6.648192 TCTCCTACTACTGTCCTACAACTAC 58.352 44.000 0.00 0.00 0.00 2.73
712 713 5.423015 TCCTACTACTGTCCTACAACTACG 58.577 45.833 0.00 0.00 0.00 3.51
713 714 4.034975 CCTACTACTGTCCTACAACTACGC 59.965 50.000 0.00 0.00 0.00 4.42
718 719 0.801067 GTCCTACAACTACGCGCTGG 60.801 60.000 5.73 0.00 0.00 4.85
910 915 1.263484 CACAGAGACACAGCAAAGCAG 59.737 52.381 0.00 0.00 0.00 4.24
1159 1183 2.528743 CGCATGCTGGCTAGTTCGG 61.529 63.158 17.13 0.00 0.00 4.30
1183 1207 2.599082 CTCGACCTTAACGTGAGATTGC 59.401 50.000 0.00 0.00 0.00 3.56
1209 1233 3.138798 GTGCAGCCTGGCATGGAG 61.139 66.667 22.65 6.11 46.92 3.86
1401 1434 1.378382 CATGGTGGGATTCGTGGCA 60.378 57.895 0.00 0.00 0.00 4.92
1638 1671 3.195698 GCCGCCACCGAGTTCATC 61.196 66.667 0.00 0.00 36.29 2.92
1673 1717 1.992170 GTCAACATCTAAGACGGCGT 58.008 50.000 14.65 14.65 0.00 5.68
1674 1718 3.141002 GTCAACATCTAAGACGGCGTA 57.859 47.619 14.74 0.00 0.00 4.42
1675 1719 2.850647 GTCAACATCTAAGACGGCGTAC 59.149 50.000 14.74 6.97 0.00 3.67
1676 1720 2.751259 TCAACATCTAAGACGGCGTACT 59.249 45.455 14.74 9.49 0.00 2.73
1677 1721 2.846039 ACATCTAAGACGGCGTACTG 57.154 50.000 14.74 6.96 0.00 2.74
1678 1722 2.089980 ACATCTAAGACGGCGTACTGT 58.910 47.619 14.74 7.62 38.42 3.55
1679 1723 3.273434 ACATCTAAGACGGCGTACTGTA 58.727 45.455 14.74 1.73 34.75 2.74
1680 1724 3.311871 ACATCTAAGACGGCGTACTGTAG 59.688 47.826 14.74 12.06 34.75 2.74
1753 2496 3.729966 TGTTGTAGCCACGTTTATGTCA 58.270 40.909 0.00 0.00 0.00 3.58
1754 2497 3.495377 TGTTGTAGCCACGTTTATGTCAC 59.505 43.478 0.00 0.00 0.00 3.67
1755 2498 3.388345 TGTAGCCACGTTTATGTCACA 57.612 42.857 0.00 0.00 0.00 3.58
1756 2499 3.729966 TGTAGCCACGTTTATGTCACAA 58.270 40.909 0.00 0.00 0.00 3.33
1795 2541 3.016177 CGTTGCCGTTTTGTACTATCG 57.984 47.619 0.00 0.00 0.00 2.92
1881 3613 7.328249 CACTCAAACAACTTTCAAGTAGCAAAA 59.672 33.333 0.00 0.00 38.57 2.44
1882 3614 7.328493 ACTCAAACAACTTTCAAGTAGCAAAAC 59.672 33.333 0.00 0.00 38.57 2.43
1883 3615 7.148641 TCAAACAACTTTCAAGTAGCAAAACA 58.851 30.769 0.00 0.00 38.57 2.83
1884 3616 7.653713 TCAAACAACTTTCAAGTAGCAAAACAA 59.346 29.630 0.00 0.00 38.57 2.83
1942 3674 6.183360 CCATGTTGAAGGACCAATCTCATAAC 60.183 42.308 0.00 0.00 0.00 1.89
1983 3715 5.772521 ACTGAAACACATACCAAAATCTGC 58.227 37.500 0.00 0.00 0.00 4.26
1987 3719 5.543507 AACACATACCAAAATCTGCCAAA 57.456 34.783 0.00 0.00 0.00 3.28
1994 3726 8.034804 ACATACCAAAATCTGCCAAATTTCTAC 58.965 33.333 0.00 0.00 0.00 2.59
2020 3752 0.603707 CAGAATGCGGACAGTGTGGT 60.604 55.000 0.00 0.00 32.04 4.16
2021 3753 0.320771 AGAATGCGGACAGTGTGGTC 60.321 55.000 0.00 0.00 37.06 4.02
2034 3766 2.591429 TGGTCACGCAGTTGCAGG 60.591 61.111 4.84 0.00 41.61 4.85
2086 3818 3.578456 GGAACATCACGTGCCAGG 58.422 61.111 11.67 0.00 44.03 4.45
2087 3819 1.003839 GGAACATCACGTGCCAGGA 60.004 57.895 11.67 0.00 44.03 3.86
2088 3820 0.392998 GGAACATCACGTGCCAGGAT 60.393 55.000 11.67 0.00 44.03 3.24
2089 3821 0.729116 GAACATCACGTGCCAGGATG 59.271 55.000 11.67 11.53 43.08 3.51
2131 3863 4.106179 ACCATGGTGGCCATCATATTTCTA 59.894 41.667 30.89 2.31 43.15 2.10
2162 3894 1.078567 GGCAGGGAGAAGAGCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
2212 3944 8.691661 AGGCTTCCATGAAAACGTAATATAAT 57.308 30.769 0.00 0.00 0.00 1.28
2213 3945 9.131791 AGGCTTCCATGAAAACGTAATATAATT 57.868 29.630 0.00 0.00 0.00 1.40
2214 3946 9.394477 GGCTTCCATGAAAACGTAATATAATTC 57.606 33.333 0.00 0.00 0.00 2.17
2215 3947 9.944663 GCTTCCATGAAAACGTAATATAATTCA 57.055 29.630 0.00 0.00 0.00 2.57
2223 3955 9.659830 GAAAACGTAATATAATTCACATCCACC 57.340 33.333 0.00 0.00 0.00 4.61
2224 3956 8.740123 AAACGTAATATAATTCACATCCACCA 57.260 30.769 0.00 0.00 0.00 4.17
2225 3957 8.740123 AACGTAATATAATTCACATCCACCAA 57.260 30.769 0.00 0.00 0.00 3.67
2226 3958 8.378172 ACGTAATATAATTCACATCCACCAAG 57.622 34.615 0.00 0.00 0.00 3.61
2227 3959 8.208224 ACGTAATATAATTCACATCCACCAAGA 58.792 33.333 0.00 0.00 0.00 3.02
2228 3960 9.051679 CGTAATATAATTCACATCCACCAAGAA 57.948 33.333 0.00 0.00 0.00 2.52
2231 3963 9.872684 AATATAATTCACATCCACCAAGAAGAT 57.127 29.630 0.00 0.00 0.00 2.40
2233 3965 8.682936 ATAATTCACATCCACCAAGAAGATAC 57.317 34.615 0.00 0.00 0.00 2.24
2234 3966 5.497464 TTCACATCCACCAAGAAGATACA 57.503 39.130 0.00 0.00 0.00 2.29
2235 3967 5.089970 TCACATCCACCAAGAAGATACAG 57.910 43.478 0.00 0.00 0.00 2.74
2236 3968 4.532126 TCACATCCACCAAGAAGATACAGT 59.468 41.667 0.00 0.00 0.00 3.55
2237 3969 5.719563 TCACATCCACCAAGAAGATACAGTA 59.280 40.000 0.00 0.00 0.00 2.74
2238 3970 6.212589 TCACATCCACCAAGAAGATACAGTAA 59.787 38.462 0.00 0.00 0.00 2.24
2239 3971 7.050377 CACATCCACCAAGAAGATACAGTAAT 58.950 38.462 0.00 0.00 0.00 1.89
2240 3972 8.204160 CACATCCACCAAGAAGATACAGTAATA 58.796 37.037 0.00 0.00 0.00 0.98
2241 3973 8.768397 ACATCCACCAAGAAGATACAGTAATAA 58.232 33.333 0.00 0.00 0.00 1.40
2242 3974 9.613428 CATCCACCAAGAAGATACAGTAATAAA 57.387 33.333 0.00 0.00 0.00 1.40
2269 4001 7.597386 TCACTACATCAGATCATAGTATGTGC 58.403 38.462 9.94 3.89 33.15 4.57
2270 4002 6.810676 CACTACATCAGATCATAGTATGTGCC 59.189 42.308 9.94 1.46 33.15 5.01
2271 4003 5.813513 ACATCAGATCATAGTATGTGCCA 57.186 39.130 9.94 0.00 29.93 4.92
2272 4004 6.178607 ACATCAGATCATAGTATGTGCCAA 57.821 37.500 9.94 0.00 29.93 4.52
2273 4005 5.994054 ACATCAGATCATAGTATGTGCCAAC 59.006 40.000 9.94 0.00 29.93 3.77
2274 4006 5.612725 TCAGATCATAGTATGTGCCAACA 57.387 39.130 9.94 0.00 41.58 3.33
2301 4033 5.385198 TCTTTACTTTCTTGGTGCTTCCAT 58.615 37.500 2.36 0.00 46.60 3.41
2313 4045 4.122046 GGTGCTTCCATATTCCAAATTGC 58.878 43.478 0.00 0.00 35.97 3.56
2349 4081 5.600908 TGCAACCTAATACTTTCACGAAC 57.399 39.130 0.00 0.00 0.00 3.95
2358 4090 8.753175 CCTAATACTTTCACGAACAATAGCTAC 58.247 37.037 0.00 0.00 0.00 3.58
2367 4099 3.435327 CGAACAATAGCTACTTGTTGGCA 59.565 43.478 25.59 0.00 44.56 4.92
2374 4106 1.549203 CTACTTGTTGGCATGCCCTT 58.451 50.000 33.44 13.34 34.56 3.95
2390 4122 2.486191 GCCCTTCCACCATCTATGTCTG 60.486 54.545 0.00 0.00 0.00 3.51
2417 4149 4.576053 GCTCTAATGTGGTTACATCATGCA 59.424 41.667 0.00 0.00 46.54 3.96
2448 4180 1.068333 GTCATGGCTTGTTTGCGATGT 60.068 47.619 10.30 0.00 45.25 3.06
2449 4181 1.612950 TCATGGCTTGTTTGCGATGTT 59.387 42.857 10.30 0.00 45.25 2.71
2463 4195 2.478539 GCGATGTTCATCTTTGGAAGCC 60.479 50.000 10.44 0.00 0.00 4.35
2479 4211 3.352648 GAAGCCCCTAATGTTTGCACTA 58.647 45.455 0.00 0.00 0.00 2.74
2487 4219 6.601613 CCCCTAATGTTTGCACTAATCAAGTA 59.398 38.462 0.00 0.00 35.76 2.24
2488 4220 7.122055 CCCCTAATGTTTGCACTAATCAAGTAA 59.878 37.037 0.00 0.00 35.76 2.24
2511 4243 1.473257 CGCATGCTACTGCTCCCTTTA 60.473 52.381 17.13 0.00 40.06 1.85
2513 4245 3.554960 CGCATGCTACTGCTCCCTTTATA 60.555 47.826 17.13 0.00 40.06 0.98
2548 4280 3.798548 GCTCTAAAGCTCTCGGGATTCAG 60.799 52.174 0.00 0.00 45.55 3.02
2598 4443 9.325198 GTTTCTTTTCCAGTTATGTTTTTGGAT 57.675 29.630 0.00 0.00 39.33 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.320673 AGAAGGTGTAGAAGAAAGCCG 57.679 47.619 0.00 0.00 0.00 5.52
1 2 5.048643 GGAAAAGAAGGTGTAGAAGAAAGCC 60.049 44.000 0.00 0.00 0.00 4.35
2 3 5.334182 CGGAAAAGAAGGTGTAGAAGAAAGC 60.334 44.000 0.00 0.00 0.00 3.51
4 5 4.514066 GCGGAAAAGAAGGTGTAGAAGAAA 59.486 41.667 0.00 0.00 0.00 2.52
5 6 4.062991 GCGGAAAAGAAGGTGTAGAAGAA 58.937 43.478 0.00 0.00 0.00 2.52
6 7 3.556423 GGCGGAAAAGAAGGTGTAGAAGA 60.556 47.826 0.00 0.00 0.00 2.87
7 8 2.742589 GGCGGAAAAGAAGGTGTAGAAG 59.257 50.000 0.00 0.00 0.00 2.85
8 9 2.105134 TGGCGGAAAAGAAGGTGTAGAA 59.895 45.455 0.00 0.00 0.00 2.10
9 10 1.695242 TGGCGGAAAAGAAGGTGTAGA 59.305 47.619 0.00 0.00 0.00 2.59
10 11 2.076863 CTGGCGGAAAAGAAGGTGTAG 58.923 52.381 0.00 0.00 0.00 2.74
11 12 1.880646 GCTGGCGGAAAAGAAGGTGTA 60.881 52.381 0.00 0.00 0.00 2.90
12 13 1.172812 GCTGGCGGAAAAGAAGGTGT 61.173 55.000 0.00 0.00 0.00 4.16
13 14 1.581447 GCTGGCGGAAAAGAAGGTG 59.419 57.895 0.00 0.00 0.00 4.00
14 15 1.603739 GGCTGGCGGAAAAGAAGGT 60.604 57.895 0.00 0.00 0.00 3.50
15 16 2.343426 GGGCTGGCGGAAAAGAAGG 61.343 63.158 0.00 0.00 0.00 3.46
16 17 2.343426 GGGGCTGGCGGAAAAGAAG 61.343 63.158 0.00 0.00 0.00 2.85
17 18 2.282887 GGGGCTGGCGGAAAAGAA 60.283 61.111 0.00 0.00 0.00 2.52
18 19 3.256960 AGGGGCTGGCGGAAAAGA 61.257 61.111 0.00 0.00 0.00 2.52
19 20 2.751837 GAGGGGCTGGCGGAAAAG 60.752 66.667 0.00 0.00 0.00 2.27
20 21 4.360405 GGAGGGGCTGGCGGAAAA 62.360 66.667 0.00 0.00 0.00 2.29
25 26 4.479993 CAAGAGGAGGGGCTGGCG 62.480 72.222 0.00 0.00 0.00 5.69
26 27 4.120755 CCAAGAGGAGGGGCTGGC 62.121 72.222 0.00 0.00 36.89 4.85
27 28 4.120755 GCCAAGAGGAGGGGCTGG 62.121 72.222 0.00 0.00 44.32 4.85
28 29 4.120755 GGCCAAGAGGAGGGGCTG 62.121 72.222 0.00 0.00 46.87 4.85
31 32 2.330924 GAATCGGCCAAGAGGAGGGG 62.331 65.000 2.24 0.00 36.89 4.79
32 33 1.147153 GAATCGGCCAAGAGGAGGG 59.853 63.158 2.24 0.00 36.89 4.30
33 34 1.147153 GGAATCGGCCAAGAGGAGG 59.853 63.158 2.24 0.00 36.89 4.30
34 35 0.105778 GAGGAATCGGCCAAGAGGAG 59.894 60.000 2.24 0.00 36.89 3.69
35 36 1.676678 CGAGGAATCGGCCAAGAGGA 61.677 60.000 2.24 0.00 36.89 3.71
36 37 1.227380 CGAGGAATCGGCCAAGAGG 60.227 63.158 2.24 0.00 38.23 3.69
37 38 0.108138 AACGAGGAATCGGCCAAGAG 60.108 55.000 2.24 0.00 37.45 2.85
38 39 0.391130 CAACGAGGAATCGGCCAAGA 60.391 55.000 2.24 0.00 37.45 3.02
39 40 0.391130 TCAACGAGGAATCGGCCAAG 60.391 55.000 2.24 0.00 37.45 3.61
40 41 0.391130 CTCAACGAGGAATCGGCCAA 60.391 55.000 2.24 0.00 37.45 4.52
41 42 1.218047 CTCAACGAGGAATCGGCCA 59.782 57.895 2.24 0.00 37.45 5.36
42 43 2.174319 GCTCAACGAGGAATCGGCC 61.174 63.158 0.00 0.00 37.45 6.13
43 44 2.174319 GGCTCAACGAGGAATCGGC 61.174 63.158 2.46 0.00 37.45 5.54
44 45 1.084370 GTGGCTCAACGAGGAATCGG 61.084 60.000 2.46 0.00 37.45 4.18
45 46 1.413767 CGTGGCTCAACGAGGAATCG 61.414 60.000 0.00 0.00 46.49 3.34
46 47 1.696832 GCGTGGCTCAACGAGGAATC 61.697 60.000 10.55 0.00 46.49 2.52
47 48 1.741770 GCGTGGCTCAACGAGGAAT 60.742 57.895 10.55 0.00 46.49 3.01
48 49 2.357034 GCGTGGCTCAACGAGGAA 60.357 61.111 10.55 0.00 46.49 3.36
49 50 4.717629 CGCGTGGCTCAACGAGGA 62.718 66.667 0.00 0.00 46.49 3.71
50 51 4.717629 TCGCGTGGCTCAACGAGG 62.718 66.667 5.77 2.92 46.49 4.63
51 52 3.175240 CTCGCGTGGCTCAACGAG 61.175 66.667 5.77 12.53 46.49 4.18
65 66 3.978723 CTCACACCGGCAGAGCTCG 62.979 68.421 8.37 4.60 0.00 5.03
66 67 2.125753 CTCACACCGGCAGAGCTC 60.126 66.667 5.27 5.27 0.00 4.09
69 70 2.433838 CAGCTCACACCGGCAGAG 60.434 66.667 0.00 7.78 0.00 3.35
70 71 4.687215 GCAGCTCACACCGGCAGA 62.687 66.667 0.00 0.00 0.00 4.26
77 78 4.664677 ACCGGTCGCAGCTCACAC 62.665 66.667 0.00 0.00 0.00 3.82
78 79 4.357947 GACCGGTCGCAGCTCACA 62.358 66.667 20.85 0.00 0.00 3.58
81 82 3.991536 GAAGGACCGGTCGCAGCTC 62.992 68.421 27.68 13.07 0.00 4.09
82 83 4.070552 GAAGGACCGGTCGCAGCT 62.071 66.667 27.68 16.32 0.00 4.24
83 84 3.591254 AAGAAGGACCGGTCGCAGC 62.591 63.158 27.68 16.43 0.00 5.25
84 85 1.446272 GAAGAAGGACCGGTCGCAG 60.446 63.158 27.68 0.00 0.00 5.18
85 86 1.906824 AGAAGAAGGACCGGTCGCA 60.907 57.895 27.68 0.00 0.00 5.10
86 87 1.446272 CAGAAGAAGGACCGGTCGC 60.446 63.158 27.68 19.96 0.00 5.19
87 88 1.446272 GCAGAAGAAGGACCGGTCG 60.446 63.158 27.68 12.61 0.00 4.79
88 89 1.079057 GGCAGAAGAAGGACCGGTC 60.079 63.158 27.04 27.04 0.00 4.79
89 90 2.593956 GGGCAGAAGAAGGACCGGT 61.594 63.158 6.92 6.92 0.00 5.28
90 91 2.269241 GGGCAGAAGAAGGACCGG 59.731 66.667 0.00 0.00 0.00 5.28
91 92 1.842381 AAGGGGCAGAAGAAGGACCG 61.842 60.000 0.00 0.00 0.00 4.79
92 93 0.034960 GAAGGGGCAGAAGAAGGACC 60.035 60.000 0.00 0.00 0.00 4.46
93 94 0.988063 AGAAGGGGCAGAAGAAGGAC 59.012 55.000 0.00 0.00 0.00 3.85
94 95 1.352352 CAAGAAGGGGCAGAAGAAGGA 59.648 52.381 0.00 0.00 0.00 3.36
95 96 1.615384 CCAAGAAGGGGCAGAAGAAGG 60.615 57.143 0.00 0.00 0.00 3.46
96 97 1.831580 CCAAGAAGGGGCAGAAGAAG 58.168 55.000 0.00 0.00 0.00 2.85
106 107 4.489771 ATCCGCGGCCAAGAAGGG 62.490 66.667 23.51 0.00 38.09 3.95
107 108 2.897350 GATCCGCGGCCAAGAAGG 60.897 66.667 23.51 0.00 41.84 3.46
108 109 3.264897 CGATCCGCGGCCAAGAAG 61.265 66.667 23.51 3.09 36.03 2.85
138 139 1.226888 GAAGAACCCCGACGATCCG 60.227 63.158 0.00 0.00 0.00 4.18
139 140 1.226888 CGAAGAACCCCGACGATCC 60.227 63.158 0.00 0.00 0.00 3.36
140 141 0.801067 CACGAAGAACCCCGACGATC 60.801 60.000 0.00 0.00 0.00 3.69
141 142 1.214589 CACGAAGAACCCCGACGAT 59.785 57.895 0.00 0.00 0.00 3.73
142 143 2.646719 CACGAAGAACCCCGACGA 59.353 61.111 0.00 0.00 0.00 4.20
143 144 2.431942 CCACGAAGAACCCCGACG 60.432 66.667 0.00 0.00 0.00 5.12
144 145 2.741211 GCCACGAAGAACCCCGAC 60.741 66.667 0.00 0.00 0.00 4.79
145 146 4.367023 CGCCACGAAGAACCCCGA 62.367 66.667 0.00 0.00 0.00 5.14
162 163 4.883354 CCCTTCTCCATGGGCGGC 62.883 72.222 13.02 0.00 36.61 6.53
163 164 4.195334 CCCCTTCTCCATGGGCGG 62.195 72.222 13.02 7.19 42.03 6.13
164 165 4.195334 CCCCCTTCTCCATGGGCG 62.195 72.222 13.02 3.59 42.03 6.13
165 166 3.023735 ACCCCCTTCTCCATGGGC 61.024 66.667 13.02 0.00 42.07 5.36
166 167 2.693871 CCACCCCCTTCTCCATGGG 61.694 68.421 13.02 2.57 44.03 4.00
167 168 1.619363 TCCACCCCCTTCTCCATGG 60.619 63.158 4.97 4.97 0.00 3.66
168 169 1.639635 CCTCCACCCCCTTCTCCATG 61.640 65.000 0.00 0.00 0.00 3.66
169 170 1.308216 CCTCCACCCCCTTCTCCAT 60.308 63.158 0.00 0.00 0.00 3.41
170 171 2.124996 CCTCCACCCCCTTCTCCA 59.875 66.667 0.00 0.00 0.00 3.86
171 172 2.692741 CCCTCCACCCCCTTCTCC 60.693 72.222 0.00 0.00 0.00 3.71
172 173 3.412408 GCCCTCCACCCCCTTCTC 61.412 72.222 0.00 0.00 0.00 2.87
181 182 2.708593 AAAAACCTCCCGCCCTCCAC 62.709 60.000 0.00 0.00 0.00 4.02
182 183 2.466186 AAAAACCTCCCGCCCTCCA 61.466 57.895 0.00 0.00 0.00 3.86
183 184 2.439245 AAAAACCTCCCGCCCTCC 59.561 61.111 0.00 0.00 0.00 4.30
197 198 5.070313 CCCACTTTCCCTTCATTCTCAAAAA 59.930 40.000 0.00 0.00 0.00 1.94
198 199 4.588528 CCCACTTTCCCTTCATTCTCAAAA 59.411 41.667 0.00 0.00 0.00 2.44
199 200 4.151883 CCCACTTTCCCTTCATTCTCAAA 58.848 43.478 0.00 0.00 0.00 2.69
200 201 3.766545 CCCACTTTCCCTTCATTCTCAA 58.233 45.455 0.00 0.00 0.00 3.02
201 202 2.555227 GCCCACTTTCCCTTCATTCTCA 60.555 50.000 0.00 0.00 0.00 3.27
202 203 2.095461 GCCCACTTTCCCTTCATTCTC 58.905 52.381 0.00 0.00 0.00 2.87
203 204 1.428912 TGCCCACTTTCCCTTCATTCT 59.571 47.619 0.00 0.00 0.00 2.40
204 205 1.923356 TGCCCACTTTCCCTTCATTC 58.077 50.000 0.00 0.00 0.00 2.67
205 206 2.568509 CAATGCCCACTTTCCCTTCATT 59.431 45.455 0.00 0.00 0.00 2.57
206 207 2.181975 CAATGCCCACTTTCCCTTCAT 58.818 47.619 0.00 0.00 0.00 2.57
207 208 1.133199 ACAATGCCCACTTTCCCTTCA 60.133 47.619 0.00 0.00 0.00 3.02
208 209 1.273327 CACAATGCCCACTTTCCCTTC 59.727 52.381 0.00 0.00 0.00 3.46
209 210 1.341080 CACAATGCCCACTTTCCCTT 58.659 50.000 0.00 0.00 0.00 3.95
210 211 0.188342 ACACAATGCCCACTTTCCCT 59.812 50.000 0.00 0.00 0.00 4.20
211 212 0.318120 CACACAATGCCCACTTTCCC 59.682 55.000 0.00 0.00 0.00 3.97
212 213 3.892200 CACACAATGCCCACTTTCC 57.108 52.632 0.00 0.00 0.00 3.13
222 223 4.764336 CGCTGGCGGCACACAATG 62.764 66.667 19.92 0.00 41.91 2.82
569 570 3.286329 TTCCCGGCCTAAATTTAGACC 57.714 47.619 23.95 20.92 32.47 3.85
570 571 4.036380 CACATTCCCGGCCTAAATTTAGAC 59.964 45.833 23.95 14.14 32.47 2.59
571 572 4.204012 CACATTCCCGGCCTAAATTTAGA 58.796 43.478 23.95 5.07 32.47 2.10
572 573 3.243401 GCACATTCCCGGCCTAAATTTAG 60.243 47.826 16.90 16.90 0.00 1.85
573 574 2.691011 GCACATTCCCGGCCTAAATTTA 59.309 45.455 0.00 0.00 0.00 1.40
574 575 1.480545 GCACATTCCCGGCCTAAATTT 59.519 47.619 0.00 0.00 0.00 1.82
575 576 1.111277 GCACATTCCCGGCCTAAATT 58.889 50.000 0.00 0.00 0.00 1.82
576 577 0.755327 GGCACATTCCCGGCCTAAAT 60.755 55.000 0.00 0.00 44.32 1.40
577 578 1.379309 GGCACATTCCCGGCCTAAA 60.379 57.895 0.00 0.00 44.32 1.85
578 579 2.274104 GGCACATTCCCGGCCTAA 59.726 61.111 0.00 0.00 44.32 2.69
579 580 4.169696 CGGCACATTCCCGGCCTA 62.170 66.667 0.00 0.00 45.53 3.93
582 583 2.631580 TTTTCGGCACATTCCCGGC 61.632 57.895 0.00 0.00 45.60 6.13
583 584 1.211709 GTTTTCGGCACATTCCCGG 59.788 57.895 0.00 0.00 45.60 5.73
584 585 0.109781 CTGTTTTCGGCACATTCCCG 60.110 55.000 0.00 0.00 46.88 5.14
585 586 1.068541 GTCTGTTTTCGGCACATTCCC 60.069 52.381 0.00 0.00 0.00 3.97
586 587 1.606668 TGTCTGTTTTCGGCACATTCC 59.393 47.619 0.00 0.00 0.00 3.01
587 588 2.548057 TCTGTCTGTTTTCGGCACATTC 59.452 45.455 0.00 0.00 0.00 2.67
588 589 2.571212 TCTGTCTGTTTTCGGCACATT 58.429 42.857 0.00 0.00 0.00 2.71
589 590 2.254546 TCTGTCTGTTTTCGGCACAT 57.745 45.000 0.00 0.00 0.00 3.21
590 591 2.031258 TTCTGTCTGTTTTCGGCACA 57.969 45.000 0.00 0.00 0.00 4.57
591 592 3.414549 TTTTCTGTCTGTTTTCGGCAC 57.585 42.857 0.00 0.00 0.00 5.01
592 593 4.097135 TCAATTTTCTGTCTGTTTTCGGCA 59.903 37.500 0.00 0.00 0.00 5.69
593 594 4.441087 GTCAATTTTCTGTCTGTTTTCGGC 59.559 41.667 0.00 0.00 0.00 5.54
594 595 5.577835 TGTCAATTTTCTGTCTGTTTTCGG 58.422 37.500 0.00 0.00 0.00 4.30
595 596 7.684062 AATGTCAATTTTCTGTCTGTTTTCG 57.316 32.000 0.00 0.00 0.00 3.46
620 621 9.893634 TGTCCGTTTGAGGATAAAGAAATATAA 57.106 29.630 0.00 0.00 43.04 0.98
621 622 9.321562 GTGTCCGTTTGAGGATAAAGAAATATA 57.678 33.333 0.00 0.00 43.04 0.86
622 623 7.011109 CGTGTCCGTTTGAGGATAAAGAAATAT 59.989 37.037 0.00 0.00 43.04 1.28
623 624 6.311935 CGTGTCCGTTTGAGGATAAAGAAATA 59.688 38.462 0.00 0.00 43.04 1.40
624 625 5.121768 CGTGTCCGTTTGAGGATAAAGAAAT 59.878 40.000 0.00 0.00 43.04 2.17
625 626 4.449743 CGTGTCCGTTTGAGGATAAAGAAA 59.550 41.667 0.00 0.00 43.04 2.52
626 627 3.991773 CGTGTCCGTTTGAGGATAAAGAA 59.008 43.478 0.00 0.00 43.04 2.52
627 628 3.581755 CGTGTCCGTTTGAGGATAAAGA 58.418 45.455 0.00 0.00 43.04 2.52
628 629 2.671396 CCGTGTCCGTTTGAGGATAAAG 59.329 50.000 0.00 0.00 43.04 1.85
629 630 2.613474 CCCGTGTCCGTTTGAGGATAAA 60.613 50.000 0.00 0.00 43.04 1.40
630 631 1.066716 CCCGTGTCCGTTTGAGGATAA 60.067 52.381 0.00 0.00 43.04 1.75
631 632 0.533491 CCCGTGTCCGTTTGAGGATA 59.467 55.000 0.00 0.00 43.04 2.59
632 633 1.295423 CCCGTGTCCGTTTGAGGAT 59.705 57.895 0.00 0.00 43.04 3.24
633 634 2.738480 CCCGTGTCCGTTTGAGGA 59.262 61.111 0.00 0.00 38.11 3.71
634 635 3.047877 GCCCGTGTCCGTTTGAGG 61.048 66.667 0.00 0.00 0.00 3.86
635 636 3.411351 CGCCCGTGTCCGTTTGAG 61.411 66.667 0.00 0.00 0.00 3.02
636 637 4.973055 CCGCCCGTGTCCGTTTGA 62.973 66.667 0.00 0.00 0.00 2.69
637 638 4.973055 TCCGCCCGTGTCCGTTTG 62.973 66.667 0.00 0.00 0.00 2.93
638 639 4.974989 GTCCGCCCGTGTCCGTTT 62.975 66.667 0.00 0.00 0.00 3.60
642 643 4.832608 GATGGTCCGCCCGTGTCC 62.833 72.222 0.00 0.00 35.15 4.02
643 644 3.718210 GAGATGGTCCGCCCGTGTC 62.718 68.421 0.00 0.00 35.54 3.67
644 645 3.771160 GAGATGGTCCGCCCGTGT 61.771 66.667 0.00 0.00 35.15 4.49
645 646 4.873129 CGAGATGGTCCGCCCGTG 62.873 72.222 0.00 0.00 35.15 4.94
654 655 3.461773 CGCAGGACCCGAGATGGT 61.462 66.667 0.00 0.00 42.79 3.55
655 656 3.019003 AACGCAGGACCCGAGATGG 62.019 63.158 0.00 0.00 37.55 3.51
656 657 1.811266 CAACGCAGGACCCGAGATG 60.811 63.158 0.00 0.00 0.00 2.90
657 658 1.541310 TTCAACGCAGGACCCGAGAT 61.541 55.000 0.00 0.00 0.00 2.75
658 659 2.154798 CTTCAACGCAGGACCCGAGA 62.155 60.000 0.00 0.00 0.00 4.04
659 660 1.738099 CTTCAACGCAGGACCCGAG 60.738 63.158 0.00 0.00 0.00 4.63
660 661 2.035237 AACTTCAACGCAGGACCCGA 62.035 55.000 0.00 0.00 0.00 5.14
661 662 1.566018 GAACTTCAACGCAGGACCCG 61.566 60.000 0.00 0.00 0.00 5.28
662 663 1.566018 CGAACTTCAACGCAGGACCC 61.566 60.000 0.00 0.00 0.00 4.46
663 664 1.860078 CGAACTTCAACGCAGGACC 59.140 57.895 0.00 0.00 0.00 4.46
670 671 1.128692 GAGATTGGGCGAACTTCAACG 59.871 52.381 0.00 0.00 0.00 4.10
671 672 1.468914 GGAGATTGGGCGAACTTCAAC 59.531 52.381 0.00 0.00 0.00 3.18
672 673 1.351017 AGGAGATTGGGCGAACTTCAA 59.649 47.619 0.00 0.00 0.00 2.69
673 674 0.984230 AGGAGATTGGGCGAACTTCA 59.016 50.000 0.00 0.00 0.00 3.02
674 675 2.168728 AGTAGGAGATTGGGCGAACTTC 59.831 50.000 0.00 0.00 0.00 3.01
675 676 2.188817 AGTAGGAGATTGGGCGAACTT 58.811 47.619 0.00 0.00 0.00 2.66
676 677 1.867363 AGTAGGAGATTGGGCGAACT 58.133 50.000 0.00 0.00 0.00 3.01
677 678 2.694109 AGTAGTAGGAGATTGGGCGAAC 59.306 50.000 0.00 0.00 0.00 3.95
678 679 2.693591 CAGTAGTAGGAGATTGGGCGAA 59.306 50.000 0.00 0.00 0.00 4.70
679 680 2.307768 CAGTAGTAGGAGATTGGGCGA 58.692 52.381 0.00 0.00 0.00 5.54
680 681 2.032620 ACAGTAGTAGGAGATTGGGCG 58.967 52.381 0.00 0.00 0.00 6.13
681 682 2.365941 GGACAGTAGTAGGAGATTGGGC 59.634 54.545 0.00 0.00 0.00 5.36
682 683 3.917300 AGGACAGTAGTAGGAGATTGGG 58.083 50.000 0.00 0.00 0.00 4.12
683 684 5.446860 TGTAGGACAGTAGTAGGAGATTGG 58.553 45.833 0.00 0.00 0.00 3.16
684 685 6.603997 AGTTGTAGGACAGTAGTAGGAGATTG 59.396 42.308 0.00 0.00 0.00 2.67
685 686 6.733509 AGTTGTAGGACAGTAGTAGGAGATT 58.266 40.000 0.00 0.00 0.00 2.40
686 687 6.330178 AGTTGTAGGACAGTAGTAGGAGAT 57.670 41.667 0.00 0.00 0.00 2.75
687 688 5.775813 AGTTGTAGGACAGTAGTAGGAGA 57.224 43.478 0.00 0.00 0.00 3.71
688 689 5.523188 CGTAGTTGTAGGACAGTAGTAGGAG 59.477 48.000 0.00 0.00 0.00 3.69
689 690 5.423015 CGTAGTTGTAGGACAGTAGTAGGA 58.577 45.833 0.00 0.00 0.00 2.94
690 691 4.034975 GCGTAGTTGTAGGACAGTAGTAGG 59.965 50.000 0.00 0.00 0.00 3.18
691 692 4.260132 CGCGTAGTTGTAGGACAGTAGTAG 60.260 50.000 0.00 0.00 0.00 2.57
692 693 3.618594 CGCGTAGTTGTAGGACAGTAGTA 59.381 47.826 0.00 0.00 0.00 1.82
693 694 2.417933 CGCGTAGTTGTAGGACAGTAGT 59.582 50.000 0.00 0.00 0.00 2.73
694 695 2.790468 GCGCGTAGTTGTAGGACAGTAG 60.790 54.545 8.43 0.00 0.00 2.57
695 696 1.131126 GCGCGTAGTTGTAGGACAGTA 59.869 52.381 8.43 0.00 0.00 2.74
696 697 0.109412 GCGCGTAGTTGTAGGACAGT 60.109 55.000 8.43 0.00 0.00 3.55
697 698 0.170561 AGCGCGTAGTTGTAGGACAG 59.829 55.000 8.43 0.00 0.00 3.51
698 699 0.109458 CAGCGCGTAGTTGTAGGACA 60.109 55.000 8.43 0.00 0.00 4.02
699 700 0.801067 CCAGCGCGTAGTTGTAGGAC 60.801 60.000 8.43 0.00 0.00 3.85
700 701 1.509463 CCAGCGCGTAGTTGTAGGA 59.491 57.895 8.43 0.00 0.00 2.94
701 702 1.518572 CCCAGCGCGTAGTTGTAGG 60.519 63.158 8.43 0.00 0.00 3.18
702 703 0.389426 AACCCAGCGCGTAGTTGTAG 60.389 55.000 8.43 0.00 0.00 2.74
703 704 0.388907 GAACCCAGCGCGTAGTTGTA 60.389 55.000 15.09 0.00 0.00 2.41
704 705 1.666872 GAACCCAGCGCGTAGTTGT 60.667 57.895 15.09 0.00 0.00 3.32
705 706 1.666553 TGAACCCAGCGCGTAGTTG 60.667 57.895 15.09 1.76 0.00 3.16
706 707 1.666872 GTGAACCCAGCGCGTAGTT 60.667 57.895 8.43 10.99 0.00 2.24
707 708 2.048503 GTGAACCCAGCGCGTAGT 60.049 61.111 8.43 0.00 0.00 2.73
708 709 0.949105 AAAGTGAACCCAGCGCGTAG 60.949 55.000 8.43 0.00 0.00 3.51
709 710 0.533308 AAAAGTGAACCCAGCGCGTA 60.533 50.000 8.43 0.00 0.00 4.42
710 711 1.381165 AAAAAGTGAACCCAGCGCGT 61.381 50.000 8.43 0.00 0.00 6.01
711 712 0.934436 CAAAAAGTGAACCCAGCGCG 60.934 55.000 0.00 0.00 0.00 6.86
712 713 0.597377 CCAAAAAGTGAACCCAGCGC 60.597 55.000 0.00 0.00 0.00 5.92
713 714 0.597377 GCCAAAAAGTGAACCCAGCG 60.597 55.000 0.00 0.00 0.00 5.18
718 719 1.335051 GCTCTCGCCAAAAAGTGAACC 60.335 52.381 0.00 0.00 0.00 3.62
910 915 0.376152 CGATGTCACTTGGCTGATGC 59.624 55.000 0.00 0.00 38.76 3.91
1159 1183 1.808945 TCTCACGTTAAGGTCGAGTCC 59.191 52.381 18.54 0.00 0.00 3.85
1170 1194 5.120053 CACATACACAAGCAATCTCACGTTA 59.880 40.000 0.00 0.00 0.00 3.18
1183 1207 0.806868 CCAGGCTGCACATACACAAG 59.193 55.000 9.56 0.00 0.00 3.16
1209 1233 2.135933 CTCGTTGTCTCCTTGGTTGAC 58.864 52.381 7.97 7.97 0.00 3.18
1497 1530 1.963855 CACCAACGATGCCACGGAA 60.964 57.895 0.00 0.00 37.61 4.30
1671 1715 2.663630 ATCCGCAGCGCTACAGTACG 62.664 60.000 10.99 7.37 0.00 3.67
1672 1716 0.527817 AATCCGCAGCGCTACAGTAC 60.528 55.000 10.99 0.00 0.00 2.73
1673 1717 0.248907 GAATCCGCAGCGCTACAGTA 60.249 55.000 10.99 0.00 0.00 2.74
1674 1718 1.519455 GAATCCGCAGCGCTACAGT 60.519 57.895 10.99 0.00 0.00 3.55
1675 1719 1.211818 GAGAATCCGCAGCGCTACAG 61.212 60.000 10.99 4.00 0.00 2.74
1676 1720 1.226974 GAGAATCCGCAGCGCTACA 60.227 57.895 10.99 0.00 0.00 2.74
1677 1721 0.528684 AAGAGAATCCGCAGCGCTAC 60.529 55.000 10.99 2.42 33.66 3.58
1678 1722 0.175760 AAAGAGAATCCGCAGCGCTA 59.824 50.000 10.99 0.00 33.66 4.26
1679 1723 0.674895 AAAAGAGAATCCGCAGCGCT 60.675 50.000 10.07 2.64 33.66 5.92
1680 1724 0.247854 GAAAAGAGAATCCGCAGCGC 60.248 55.000 10.07 0.00 33.66 5.92
1763 2509 2.103934 GCAACGTGGCTGCAACAA 59.896 55.556 7.95 0.00 39.69 2.83
1795 2541 4.883585 TGAGATTTACAGATTGCCATCACC 59.116 41.667 0.01 0.00 0.00 4.02
1849 3557 7.836842 ACTTGAAAGTTGTTTGAGTGGTAATT 58.163 30.769 0.00 0.00 35.21 1.40
1853 3561 5.163652 GCTACTTGAAAGTTGTTTGAGTGGT 60.164 40.000 0.21 0.00 40.37 4.16
1899 3631 9.448438 TCAACATGGCATATACAATATACCTTC 57.552 33.333 0.00 0.00 0.00 3.46
1906 3638 6.714810 GGTCCTTCAACATGGCATATACAATA 59.285 38.462 0.00 0.00 0.00 1.90
1912 3644 3.668141 TGGTCCTTCAACATGGCATAT 57.332 42.857 0.00 0.00 0.00 1.78
1970 3702 8.133024 TGTAGAAATTTGGCAGATTTTGGTAT 57.867 30.769 16.07 4.95 0.00 2.73
1983 3715 8.586273 CGCATTCTGTTTTATGTAGAAATTTGG 58.414 33.333 0.00 0.00 34.47 3.28
1987 3719 7.120579 TGTCCGCATTCTGTTTTATGTAGAAAT 59.879 33.333 0.00 0.00 34.47 2.17
1994 3726 4.083324 ACACTGTCCGCATTCTGTTTTATG 60.083 41.667 0.00 0.00 0.00 1.90
2020 3752 1.153269 TCAACCTGCAACTGCGTGA 60.153 52.632 0.00 0.00 45.83 4.35
2021 3753 1.280746 CTCAACCTGCAACTGCGTG 59.719 57.895 0.00 0.00 45.83 5.34
2025 3757 1.068748 GTGATGCTCAACCTGCAACTG 60.069 52.381 0.00 0.00 44.01 3.16
2034 3766 3.881688 AGAATATGCTGGTGATGCTCAAC 59.118 43.478 0.00 0.00 33.88 3.18
2048 3780 6.441093 TCCATCAACAACTTCAGAATATGC 57.559 37.500 0.00 0.00 0.00 3.14
2078 3810 0.179116 CTCAGAGACATCCTGGCACG 60.179 60.000 0.00 0.00 32.73 5.34
2080 3812 0.979709 CCCTCAGAGACATCCTGGCA 60.980 60.000 0.00 0.00 32.73 4.92
2081 3813 0.689080 TCCCTCAGAGACATCCTGGC 60.689 60.000 0.00 0.00 32.73 4.85
2131 3863 4.756564 TCTCCCTGCCTCTATATGAACAT 58.243 43.478 0.00 0.00 0.00 2.71
2162 3894 4.227197 TCTTTCCCCTCTCTCATCATACC 58.773 47.826 0.00 0.00 0.00 2.73
2212 3944 5.013079 ACTGTATCTTCTTGGTGGATGTGAA 59.987 40.000 0.00 0.00 0.00 3.18
2213 3945 4.532126 ACTGTATCTTCTTGGTGGATGTGA 59.468 41.667 0.00 0.00 0.00 3.58
2214 3946 4.836825 ACTGTATCTTCTTGGTGGATGTG 58.163 43.478 0.00 0.00 0.00 3.21
2215 3947 6.620877 TTACTGTATCTTCTTGGTGGATGT 57.379 37.500 0.00 0.00 0.00 3.06
2216 3948 9.613428 TTTATTACTGTATCTTCTTGGTGGATG 57.387 33.333 0.00 0.00 0.00 3.51
2243 3975 8.249638 GCACATACTATGATCTGATGTAGTGAT 58.750 37.037 16.60 8.14 0.00 3.06
2244 3976 7.309438 GGCACATACTATGATCTGATGTAGTGA 60.309 40.741 16.60 6.84 0.00 3.41
2245 3977 6.810676 GGCACATACTATGATCTGATGTAGTG 59.189 42.308 16.60 12.44 0.00 2.74
2246 3978 6.494835 TGGCACATACTATGATCTGATGTAGT 59.505 38.462 13.59 13.59 0.00 2.73
2247 3979 6.928520 TGGCACATACTATGATCTGATGTAG 58.071 40.000 2.90 0.25 0.00 2.74
2248 3980 6.916360 TGGCACATACTATGATCTGATGTA 57.084 37.500 2.90 0.00 0.00 2.29
2249 3981 5.813513 TGGCACATACTATGATCTGATGT 57.186 39.130 2.90 0.00 0.00 3.06
2250 3982 5.993441 TGTTGGCACATACTATGATCTGATG 59.007 40.000 2.90 0.00 39.30 3.07
2251 3983 5.994054 GTGTTGGCACATACTATGATCTGAT 59.006 40.000 2.90 0.00 44.64 2.90
2252 3984 5.359756 GTGTTGGCACATACTATGATCTGA 58.640 41.667 2.90 0.00 44.64 3.27
2253 3985 5.663795 GTGTTGGCACATACTATGATCTG 57.336 43.478 2.90 0.00 44.64 2.90
2266 3998 5.831997 AGAAAGTAAAGATTGTGTTGGCAC 58.168 37.500 0.00 0.00 45.44 5.01
2267 3999 6.272318 CAAGAAAGTAAAGATTGTGTTGGCA 58.728 36.000 0.00 0.00 0.00 4.92
2268 4000 5.691754 CCAAGAAAGTAAAGATTGTGTTGGC 59.308 40.000 0.00 0.00 0.00 4.52
2269 4001 6.697019 CACCAAGAAAGTAAAGATTGTGTTGG 59.303 38.462 0.00 0.00 37.36 3.77
2270 4002 6.198966 GCACCAAGAAAGTAAAGATTGTGTTG 59.801 38.462 0.00 0.00 0.00 3.33
2271 4003 6.096846 AGCACCAAGAAAGTAAAGATTGTGTT 59.903 34.615 0.00 0.00 0.00 3.32
2272 4004 5.594317 AGCACCAAGAAAGTAAAGATTGTGT 59.406 36.000 0.00 0.00 0.00 3.72
2273 4005 6.076981 AGCACCAAGAAAGTAAAGATTGTG 57.923 37.500 0.00 0.00 0.00 3.33
2274 4006 6.239036 GGAAGCACCAAGAAAGTAAAGATTGT 60.239 38.462 0.00 0.00 38.79 2.71
2275 4007 6.152379 GGAAGCACCAAGAAAGTAAAGATTG 58.848 40.000 0.00 0.00 38.79 2.67
2276 4008 5.833131 TGGAAGCACCAAGAAAGTAAAGATT 59.167 36.000 0.11 0.00 46.75 2.40
2277 4009 5.385198 TGGAAGCACCAAGAAAGTAAAGAT 58.615 37.500 0.11 0.00 46.75 2.40
2301 4033 8.462589 TCAACATAGCATAGCAATTTGGAATA 57.537 30.769 0.00 0.00 0.00 1.75
2313 4045 6.866010 TTAGGTTGCATCAACATAGCATAG 57.134 37.500 11.22 0.00 45.11 2.23
2349 4081 3.489738 GGCATGCCAACAAGTAGCTATTG 60.490 47.826 32.08 5.61 35.81 1.90
2358 4090 1.186917 TGGAAGGGCATGCCAACAAG 61.187 55.000 36.56 0.00 37.98 3.16
2367 4099 2.107204 GACATAGATGGTGGAAGGGCAT 59.893 50.000 0.00 0.00 0.00 4.40
2390 4122 3.241067 TGTAACCACATTAGAGCGACC 57.759 47.619 0.00 0.00 0.00 4.79
2417 4149 0.330604 AGCCATGACAGAACATGCCT 59.669 50.000 0.00 0.00 44.11 4.75
2448 4180 4.264352 ACATTAGGGGCTTCCAAAGATGAA 60.264 41.667 0.00 0.00 38.24 2.57
2449 4181 3.269381 ACATTAGGGGCTTCCAAAGATGA 59.731 43.478 0.00 0.00 38.24 2.92
2463 4195 6.515272 ACTTGATTAGTGCAAACATTAGGG 57.485 37.500 0.00 0.00 35.19 3.53
2479 4211 1.086696 AGCATGCGCGTTACTTGATT 58.913 45.000 13.01 0.00 45.49 2.57
2533 4265 2.685106 TATCCTGAATCCCGAGAGCT 57.315 50.000 0.00 0.00 0.00 4.09
2534 4266 2.676463 GCATATCCTGAATCCCGAGAGC 60.676 54.545 0.00 0.00 0.00 4.09
2535 4267 2.830923 AGCATATCCTGAATCCCGAGAG 59.169 50.000 0.00 0.00 0.00 3.20
2536 4268 2.828520 GAGCATATCCTGAATCCCGAGA 59.171 50.000 0.00 0.00 0.00 4.04
2538 4270 2.894731 AGAGCATATCCTGAATCCCGA 58.105 47.619 0.00 0.00 0.00 5.14
2548 4280 9.732130 AACTCCATAAGATAAAAGAGCATATCC 57.268 33.333 0.00 0.00 30.41 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.