Multiple sequence alignment - TraesCS1B01G326700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G326700 chr1B 100.000 5517 0 0 1 5517 553022065 553016549 0.000000e+00 10189.0
1 TraesCS1B01G326700 chr1B 90.123 81 5 1 3830 3910 120657848 120657925 9.780000e-18 102.0
2 TraesCS1B01G326700 chr1D 95.660 3894 116 20 1 3873 410469201 410465340 0.000000e+00 6205.0
3 TraesCS1B01G326700 chr1D 92.745 1213 50 12 3954 5150 410465338 410464148 0.000000e+00 1718.0
4 TraesCS1B01G326700 chr1D 89.796 98 9 1 5232 5328 153640126 153640223 2.090000e-24 124.0
5 TraesCS1B01G326700 chr1A 97.047 3115 83 4 764 3873 506285892 506282782 0.000000e+00 5234.0
6 TraesCS1B01G326700 chr1A 93.201 1162 43 10 3951 5097 506282783 506281643 0.000000e+00 1676.0
7 TraesCS1B01G326700 chr1A 88.072 612 25 13 10 607 506286680 506286103 0.000000e+00 682.0
8 TraesCS1B01G326700 chr1A 86.557 610 48 10 10 607 506306220 506305633 4.660000e-180 641.0
9 TraesCS1B01G326700 chr1A 85.321 109 8 4 622 730 506285990 506285890 7.560000e-19 106.0
10 TraesCS1B01G326700 chr1A 96.491 57 2 0 5094 5150 506281222 506281166 1.640000e-15 95.3
11 TraesCS1B01G326700 chr6D 91.896 728 42 10 3122 3836 163354726 163354003 0.000000e+00 1002.0
12 TraesCS1B01G326700 chr6D 82.407 648 85 21 2864 3492 419888774 419889411 6.290000e-149 538.0
13 TraesCS1B01G326700 chr6D 86.117 461 52 6 3916 4375 419889797 419890246 2.310000e-133 486.0
14 TraesCS1B01G326700 chr6D 87.000 100 11 2 5230 5328 462088162 462088064 1.620000e-20 111.0
15 TraesCS1B01G326700 chr4D 91.821 648 44 5 3197 3836 447981375 447980729 0.000000e+00 894.0
16 TraesCS1B01G326700 chr4D 90.728 302 26 2 148 448 435604403 435604703 8.610000e-108 401.0
17 TraesCS1B01G326700 chr6B 82.460 992 135 29 2861 3827 632883997 632884974 0.000000e+00 832.0
18 TraesCS1B01G326700 chr6B 85.900 461 50 9 3916 4375 632884979 632885425 1.390000e-130 477.0
19 TraesCS1B01G326700 chr6A 81.635 991 137 28 2861 3814 562939746 562940728 0.000000e+00 780.0
20 TraesCS1B01G326700 chr6A 85.746 456 53 7 3916 4370 562940908 562941352 6.470000e-129 472.0
21 TraesCS1B01G326700 chr6A 85.088 456 53 8 3916 4370 562942230 562942671 8.430000e-123 451.0
22 TraesCS1B01G326700 chr6A 91.509 106 8 1 5224 5328 426317168 426317063 1.600000e-30 145.0
23 TraesCS1B01G326700 chr6A 91.667 96 7 1 5234 5328 53551157 53551062 1.250000e-26 132.0
24 TraesCS1B01G326700 chr6A 82.955 88 12 1 3824 3911 475293891 475293807 5.930000e-10 76.8
25 TraesCS1B01G326700 chr2B 92.558 430 29 3 3409 3836 654361146 654361574 1.020000e-171 614.0
26 TraesCS1B01G326700 chr5B 91.781 438 31 5 3402 3836 614979987 614980422 6.110000e-169 604.0
27 TraesCS1B01G326700 chr2A 92.037 427 32 2 3412 3836 711072185 711071759 2.840000e-167 599.0
28 TraesCS1B01G326700 chr7B 92.037 427 31 3 3412 3836 686930785 686930360 1.020000e-166 597.0
29 TraesCS1B01G326700 chr7B 93.478 92 6 0 5236 5327 666538770 666538679 2.680000e-28 137.0
30 TraesCS1B01G326700 chr7D 92.708 96 7 0 5234 5329 39655815 39655910 7.450000e-29 139.0
31 TraesCS1B01G326700 chr7D 91.667 96 7 1 5234 5328 95674014 95674109 1.250000e-26 132.0
32 TraesCS1B01G326700 chr7D 88.000 100 8 3 5230 5328 254509890 254509794 1.260000e-21 115.0
33 TraesCS1B01G326700 chr7A 92.632 95 6 1 5235 5328 452580814 452580908 9.640000e-28 135.0
34 TraesCS1B01G326700 chr7A 80.128 156 14 8 5236 5374 716965718 716965873 3.520000e-17 100.0
35 TraesCS1B01G326700 chr3D 92.632 95 6 1 5235 5328 421792304 421792398 9.640000e-28 135.0
36 TraesCS1B01G326700 chr3D 86.239 109 14 1 5219 5326 568815867 568815975 3.490000e-22 117.0
37 TraesCS1B01G326700 chr3D 91.566 83 4 1 3829 3911 516880546 516880467 1.620000e-20 111.0
38 TraesCS1B01G326700 chr3D 81.879 149 10 8 5235 5367 228535930 228535783 5.840000e-20 110.0
39 TraesCS1B01G326700 chr3D 87.356 87 8 1 3825 3911 165863598 165863515 4.550000e-16 97.1
40 TraesCS1B01G326700 chr4A 91.667 96 8 0 5233 5328 323933007 323933102 3.470000e-27 134.0
41 TraesCS1B01G326700 chr2D 91.753 97 7 1 5234 5329 482795611 482795707 3.470000e-27 134.0
42 TraesCS1B01G326700 chr2D 81.325 166 12 6 5229 5376 327599423 327599587 3.490000e-22 117.0
43 TraesCS1B01G326700 chr4B 91.579 95 8 0 5234 5328 427514014 427513920 1.250000e-26 132.0
44 TraesCS1B01G326700 chr4B 89.000 100 10 1 5229 5328 483748254 483748352 7.510000e-24 122.0
45 TraesCS1B01G326700 chr3B 88.542 96 8 1 3824 3919 126580150 126580058 4.520000e-21 113.0
46 TraesCS1B01G326700 chr3B 87.805 82 7 1 3830 3911 241680504 241680426 5.880000e-15 93.5
47 TraesCS1B01G326700 chr3A 90.123 81 5 1 3829 3909 203994034 203993957 9.780000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G326700 chr1B 553016549 553022065 5516 True 10189.000000 10189 100.000000 1 5517 1 chr1B.!!$R1 5516
1 TraesCS1B01G326700 chr1D 410464148 410469201 5053 True 3961.500000 6205 94.202500 1 5150 2 chr1D.!!$R1 5149
2 TraesCS1B01G326700 chr1A 506281166 506286680 5514 True 1558.660000 5234 92.026400 10 5150 5 chr1A.!!$R2 5140
3 TraesCS1B01G326700 chr1A 506305633 506306220 587 True 641.000000 641 86.557000 10 607 1 chr1A.!!$R1 597
4 TraesCS1B01G326700 chr6D 163354003 163354726 723 True 1002.000000 1002 91.896000 3122 3836 1 chr6D.!!$R1 714
5 TraesCS1B01G326700 chr6D 419888774 419890246 1472 False 512.000000 538 84.262000 2864 4375 2 chr6D.!!$F1 1511
6 TraesCS1B01G326700 chr4D 447980729 447981375 646 True 894.000000 894 91.821000 3197 3836 1 chr4D.!!$R1 639
7 TraesCS1B01G326700 chr6B 632883997 632885425 1428 False 654.500000 832 84.180000 2861 4375 2 chr6B.!!$F1 1514
8 TraesCS1B01G326700 chr6A 562939746 562942671 2925 False 567.666667 780 84.156333 2861 4370 3 chr6A.!!$F1 1509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 484 1.373435 TGGCGTCACCAGGTAAAGG 59.627 57.895 0.0 0.0 46.36 3.11 F
1008 1152 1.824852 GGGGGTTTGGACATGATTGAC 59.175 52.381 0.0 0.0 0.00 3.18 F
1282 1426 1.973812 GAAGCTTGTGGGGGCACTC 60.974 63.158 2.1 0.0 0.00 3.51 F
2543 2688 2.243810 CTGATAGGGAGAGCCAGTACC 58.756 57.143 0.0 0.0 35.15 3.34 F
3919 4307 0.610687 ACAGAGGGAGTGCTTGCTAC 59.389 55.000 0.0 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 1929 0.035598 TAGGGCGTAACTTTGCAGCA 59.964 50.000 0.0 0.0 0.00 4.41 R
2543 2688 1.117749 TCTGATCGCTCCCCCTCATG 61.118 60.000 0.0 0.0 0.00 3.07 R
2845 2990 2.554032 CTGGTTCGGCTGTGATTTTTCT 59.446 45.455 0.0 0.0 0.00 2.52 R
3948 4336 0.100325 CAAGCCAAAACGTCAGCACA 59.900 50.000 0.0 0.0 0.00 4.57 R
5304 6238 0.034756 CACCCAGGTTCACGACATGA 59.965 55.000 0.0 0.0 42.49 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.803908 GCCCCCGCTGAAGGAAGG 62.804 72.222 0.00 0.00 0.00 3.46
454 484 1.373435 TGGCGTCACCAGGTAAAGG 59.627 57.895 0.00 0.00 46.36 3.11
567 600 8.194769 ACGGTTGTTGAAACATCTTAGAAATTT 58.805 29.630 0.00 0.00 38.95 1.82
656 794 8.579850 TTGTATGATCCTTTAATCTTGCAAGT 57.420 30.769 25.19 10.46 33.57 3.16
657 795 8.579850 TGTATGATCCTTTAATCTTGCAAGTT 57.420 30.769 25.19 19.51 0.00 2.66
658 796 8.461222 TGTATGATCCTTTAATCTTGCAAGTTG 58.539 33.333 25.19 5.97 0.00 3.16
659 797 5.713025 TGATCCTTTAATCTTGCAAGTTGC 58.287 37.500 25.19 21.17 45.29 4.17
750 888 8.232913 AGTTTACCTGTGTGTTTTGATTGTAT 57.767 30.769 0.00 0.00 0.00 2.29
751 889 8.691797 AGTTTACCTGTGTGTTTTGATTGTATT 58.308 29.630 0.00 0.00 0.00 1.89
752 890 8.751335 GTTTACCTGTGTGTTTTGATTGTATTG 58.249 33.333 0.00 0.00 0.00 1.90
754 892 6.503524 ACCTGTGTGTTTTGATTGTATTGTC 58.496 36.000 0.00 0.00 0.00 3.18
756 894 7.500892 ACCTGTGTGTTTTGATTGTATTGTCTA 59.499 33.333 0.00 0.00 0.00 2.59
757 895 8.017373 CCTGTGTGTTTTGATTGTATTGTCTAG 58.983 37.037 0.00 0.00 0.00 2.43
759 897 7.717436 TGTGTGTTTTGATTGTATTGTCTAGGA 59.283 33.333 0.00 0.00 0.00 2.94
801 939 7.067494 GGCAAAATGGACTGATAAGATGTTACT 59.933 37.037 0.00 0.00 0.00 2.24
824 962 3.381590 GGGCCTTAGAAAAATAGTGCCAG 59.618 47.826 0.84 0.00 39.38 4.85
1008 1152 1.824852 GGGGGTTTGGACATGATTGAC 59.175 52.381 0.00 0.00 0.00 3.18
1120 1264 2.096496 CGGAAGAAATCTGTGCCATCAC 59.904 50.000 0.00 0.00 43.40 3.06
1139 1283 3.259625 TCACGATCTGTTGTACCCAATCA 59.740 43.478 0.00 0.00 32.11 2.57
1168 1312 3.190118 GGAAACAAGTGATGAGAAGGCTG 59.810 47.826 0.00 0.00 0.00 4.85
1203 1347 7.821846 AGTCAAGATAATTTGTCTCAAGGACTC 59.178 37.037 10.84 0.00 44.74 3.36
1204 1348 7.604164 GTCAAGATAATTTGTCTCAAGGACTCA 59.396 37.037 0.00 0.00 44.74 3.41
1222 1366 7.837863 AGGACTCACTACGAATCAAGAAATAA 58.162 34.615 0.00 0.00 0.00 1.40
1231 1375 7.827819 ACGAATCAAGAAATAACATCTTCGA 57.172 32.000 7.72 0.00 34.99 3.71
1282 1426 1.973812 GAAGCTTGTGGGGGCACTC 60.974 63.158 2.10 0.00 0.00 3.51
1309 1453 2.303890 ACACCTTCTGATGATGTGCTGA 59.696 45.455 0.00 0.00 32.15 4.26
1339 1483 6.936279 TCTTCTGTAGATAGGGTTTCACAAG 58.064 40.000 0.00 0.00 0.00 3.16
1630 1774 8.608844 AAATAAAGAGGATGGTAACGATGATC 57.391 34.615 0.00 0.00 42.51 2.92
1861 2005 3.462021 GCTGTTGGGACTAGTGATGATC 58.538 50.000 0.00 0.00 0.00 2.92
1868 2012 3.323115 GGGACTAGTGATGATCATGCAGA 59.677 47.826 14.30 2.06 0.00 4.26
1992 2136 8.355913 TCAATGCTAGTGTTGATATAGACTCTG 58.644 37.037 7.55 0.00 29.93 3.35
2147 2292 2.243957 TCGTGAGTTGTTGGCTGCG 61.244 57.895 0.00 0.00 0.00 5.18
2347 2492 8.559536 CAACAGATACCAACCATAATGACATAC 58.440 37.037 0.00 0.00 0.00 2.39
2348 2493 7.801104 ACAGATACCAACCATAATGACATACA 58.199 34.615 0.00 0.00 0.00 2.29
2349 2494 7.715249 ACAGATACCAACCATAATGACATACAC 59.285 37.037 0.00 0.00 0.00 2.90
2439 2584 9.334693 CTACACTTGTGATTAGAATTTTCTTGC 57.665 33.333 7.83 0.00 38.70 4.01
2451 2596 5.129320 AGAATTTTCTTGCCACCTCAAAAGT 59.871 36.000 0.00 0.00 32.55 2.66
2543 2688 2.243810 CTGATAGGGAGAGCCAGTACC 58.756 57.143 0.00 0.00 35.15 3.34
2647 2792 4.285517 AGAAGCAGGACAGAGATTCAGAAA 59.714 41.667 0.00 0.00 0.00 2.52
2674 2819 6.604171 TGGGTTATCTGAGCATATTGTTGAT 58.396 36.000 0.00 0.00 0.00 2.57
2833 2978 3.158537 TTCCAAGCGCACCTCGACA 62.159 57.895 11.47 0.00 41.67 4.35
2845 2990 3.138304 CACCTCGACAAAATCCACTTCA 58.862 45.455 0.00 0.00 0.00 3.02
3252 3407 4.052608 TGCTGTTGCTCATGATTTTTGTG 58.947 39.130 0.00 0.00 40.48 3.33
3263 3418 3.452474 TGATTTTTGTGTTGGCCTTTCG 58.548 40.909 3.32 0.00 0.00 3.46
3427 3594 9.214957 TGTAGTAAAATAACCAGTCATTGACAG 57.785 33.333 18.57 10.64 34.60 3.51
3465 3632 9.638239 TTCGATTTGCAAGCTTTCTATTTTATT 57.362 25.926 0.00 0.00 0.00 1.40
3466 3633 9.638239 TCGATTTGCAAGCTTTCTATTTTATTT 57.362 25.926 0.00 0.00 0.00 1.40
3508 3718 6.636454 TCAGATAGGGTATTTGAAGTTGGT 57.364 37.500 0.00 0.00 0.00 3.67
3618 3831 1.878953 TTCGCCTGTCCTGTTCTTTC 58.121 50.000 0.00 0.00 0.00 2.62
3714 3940 4.276058 TGACAGAACAGAGAATCATGCA 57.724 40.909 0.00 0.00 37.82 3.96
3878 4266 4.422073 TTTTGACACTGTCATGGACTCT 57.578 40.909 12.71 0.00 42.40 3.24
3879 4267 5.545063 TTTTGACACTGTCATGGACTCTA 57.455 39.130 12.71 0.00 42.40 2.43
3880 4268 5.545063 TTTGACACTGTCATGGACTCTAA 57.455 39.130 12.71 0.00 42.40 2.10
3881 4269 5.745312 TTGACACTGTCATGGACTCTAAT 57.255 39.130 12.71 0.00 42.40 1.73
3882 4270 6.850752 TTGACACTGTCATGGACTCTAATA 57.149 37.500 12.71 0.00 42.40 0.98
3883 4271 6.850752 TGACACTGTCATGGACTCTAATAA 57.149 37.500 7.84 0.00 37.67 1.40
3884 4272 6.631016 TGACACTGTCATGGACTCTAATAAC 58.369 40.000 7.84 0.00 37.67 1.89
3885 4273 5.651530 ACACTGTCATGGACTCTAATAACG 58.348 41.667 0.00 0.00 33.15 3.18
3886 4274 5.185249 ACACTGTCATGGACTCTAATAACGT 59.815 40.000 0.00 0.00 33.15 3.99
3887 4275 5.516696 CACTGTCATGGACTCTAATAACGTG 59.483 44.000 0.00 0.00 33.15 4.49
3888 4276 5.185249 ACTGTCATGGACTCTAATAACGTGT 59.815 40.000 0.00 0.00 33.15 4.49
3889 4277 6.032956 TGTCATGGACTCTAATAACGTGTT 57.967 37.500 0.00 0.00 33.15 3.32
3890 4278 7.094075 ACTGTCATGGACTCTAATAACGTGTTA 60.094 37.037 0.00 0.00 33.15 2.41
3891 4279 7.031372 TGTCATGGACTCTAATAACGTGTTAC 58.969 38.462 0.00 0.00 33.15 2.50
3892 4280 7.031372 GTCATGGACTCTAATAACGTGTTACA 58.969 38.462 0.00 0.00 0.00 2.41
3893 4281 7.543172 GTCATGGACTCTAATAACGTGTTACAA 59.457 37.037 0.00 0.00 0.00 2.41
3894 4282 8.089597 TCATGGACTCTAATAACGTGTTACAAA 58.910 33.333 0.00 0.00 0.00 2.83
3895 4283 8.714179 CATGGACTCTAATAACGTGTTACAAAA 58.286 33.333 0.00 0.00 0.00 2.44
3896 4284 8.659925 TGGACTCTAATAACGTGTTACAAAAA 57.340 30.769 0.00 0.00 0.00 1.94
3897 4285 8.767085 TGGACTCTAATAACGTGTTACAAAAAG 58.233 33.333 0.00 0.00 0.00 2.27
3898 4286 8.768019 GGACTCTAATAACGTGTTACAAAAAGT 58.232 33.333 0.00 0.00 0.00 2.66
3905 4293 9.925268 AATAACGTGTTACAAAAAGTTACAGAG 57.075 29.630 0.00 0.00 40.11 3.35
3906 4294 6.354039 ACGTGTTACAAAAAGTTACAGAGG 57.646 37.500 0.00 0.00 40.11 3.69
3907 4295 5.295045 ACGTGTTACAAAAAGTTACAGAGGG 59.705 40.000 0.00 0.00 40.11 4.30
3908 4296 5.524646 CGTGTTACAAAAAGTTACAGAGGGA 59.475 40.000 0.00 0.00 40.11 4.20
3909 4297 6.292703 CGTGTTACAAAAAGTTACAGAGGGAG 60.293 42.308 0.00 0.00 40.11 4.30
3910 4298 6.541278 GTGTTACAAAAAGTTACAGAGGGAGT 59.459 38.462 0.00 0.00 40.11 3.85
3911 4299 6.540914 TGTTACAAAAAGTTACAGAGGGAGTG 59.459 38.462 0.00 0.00 35.06 3.51
3912 4300 3.883489 ACAAAAAGTTACAGAGGGAGTGC 59.117 43.478 0.00 0.00 0.00 4.40
3913 4301 4.137543 CAAAAAGTTACAGAGGGAGTGCT 58.862 43.478 0.00 0.00 0.00 4.40
3914 4302 4.439253 AAAAGTTACAGAGGGAGTGCTT 57.561 40.909 0.00 0.00 0.00 3.91
3915 4303 3.409026 AAGTTACAGAGGGAGTGCTTG 57.591 47.619 0.00 0.00 0.00 4.01
3916 4304 1.002544 AGTTACAGAGGGAGTGCTTGC 59.997 52.381 0.00 0.00 0.00 4.01
3917 4305 1.002544 GTTACAGAGGGAGTGCTTGCT 59.997 52.381 0.00 0.00 0.00 3.91
3918 4306 2.231716 TACAGAGGGAGTGCTTGCTA 57.768 50.000 0.00 0.00 0.00 3.49
3919 4307 0.610687 ACAGAGGGAGTGCTTGCTAC 59.389 55.000 0.00 0.00 0.00 3.58
3920 4308 0.901124 CAGAGGGAGTGCTTGCTACT 59.099 55.000 0.00 0.00 0.00 2.57
3921 4309 2.103373 CAGAGGGAGTGCTTGCTACTA 58.897 52.381 0.00 0.00 0.00 1.82
3922 4310 2.697751 CAGAGGGAGTGCTTGCTACTAT 59.302 50.000 0.00 0.00 0.00 2.12
3923 4311 3.133721 CAGAGGGAGTGCTTGCTACTATT 59.866 47.826 0.00 0.00 0.00 1.73
3924 4312 3.777522 AGAGGGAGTGCTTGCTACTATTT 59.222 43.478 0.00 0.00 0.00 1.40
3925 4313 4.226168 AGAGGGAGTGCTTGCTACTATTTT 59.774 41.667 0.00 0.00 0.00 1.82
3926 4314 5.425539 AGAGGGAGTGCTTGCTACTATTTTA 59.574 40.000 0.00 0.00 0.00 1.52
3927 4315 6.062258 AGGGAGTGCTTGCTACTATTTTAA 57.938 37.500 0.00 0.00 0.00 1.52
3928 4316 6.663734 AGGGAGTGCTTGCTACTATTTTAAT 58.336 36.000 0.00 0.00 0.00 1.40
3929 4317 6.543831 AGGGAGTGCTTGCTACTATTTTAATG 59.456 38.462 0.00 0.00 0.00 1.90
3930 4318 6.318900 GGGAGTGCTTGCTACTATTTTAATGT 59.681 38.462 0.00 0.00 0.00 2.71
3931 4319 7.148069 GGGAGTGCTTGCTACTATTTTAATGTT 60.148 37.037 0.00 0.00 0.00 2.71
3932 4320 7.698130 GGAGTGCTTGCTACTATTTTAATGTTG 59.302 37.037 0.00 0.00 0.00 3.33
3933 4321 8.335532 AGTGCTTGCTACTATTTTAATGTTGA 57.664 30.769 0.00 0.00 0.00 3.18
3934 4322 8.792633 AGTGCTTGCTACTATTTTAATGTTGAA 58.207 29.630 0.00 0.00 0.00 2.69
3935 4323 9.573133 GTGCTTGCTACTATTTTAATGTTGAAT 57.427 29.630 0.00 0.00 0.00 2.57
3983 4371 1.751351 GCTTGCCTATGGGAAACTTCC 59.249 52.381 0.00 0.00 46.82 3.46
4016 4404 0.037232 GTTCTGGTCCAGGGTCTTCG 60.037 60.000 19.11 0.00 31.51 3.79
4071 4459 2.633481 ACTATTCCCAGATAAGTCCCGC 59.367 50.000 0.00 0.00 0.00 6.13
4203 4591 7.231317 TCCAGCCCATATATTTTGATTTCTGAC 59.769 37.037 0.00 0.00 0.00 3.51
4204 4592 7.232127 CCAGCCCATATATTTTGATTTCTGACT 59.768 37.037 0.00 0.00 0.00 3.41
4339 4735 2.874849 ACACAAAAACAAGAGGTTGCG 58.125 42.857 0.00 0.00 40.35 4.85
4434 4923 0.179062 GATGAAGAGATGGGCACGCT 60.179 55.000 0.00 0.00 0.00 5.07
4466 4955 3.084786 GTCAAAGAAGGGGAGGATGTTG 58.915 50.000 0.00 0.00 0.00 3.33
4467 4956 1.821136 CAAAGAAGGGGAGGATGTTGC 59.179 52.381 0.00 0.00 0.00 4.17
4468 4957 1.075601 AAGAAGGGGAGGATGTTGCA 58.924 50.000 0.00 0.00 0.00 4.08
4614 5123 3.517602 TGTTCTATGTCGAACGGGATTG 58.482 45.455 0.00 0.00 44.76 2.67
4794 5304 1.086634 GCTTCGTGATGTCTCCTGCC 61.087 60.000 0.00 0.00 0.00 4.85
4826 5336 0.674895 GATGGCGGCTCTCACTTTGT 60.675 55.000 11.43 0.00 0.00 2.83
4901 5411 2.622942 GCCTATCAAATGAATTGCCCGA 59.377 45.455 0.00 0.00 38.98 5.14
4906 5416 2.030363 TCAAATGAATTGCCCGACACAC 60.030 45.455 0.00 0.00 38.98 3.82
4908 5418 1.453155 ATGAATTGCCCGACACACTC 58.547 50.000 0.00 0.00 0.00 3.51
4909 5419 0.948623 TGAATTGCCCGACACACTCG 60.949 55.000 0.00 0.00 42.54 4.18
4912 5422 2.731691 ATTGCCCGACACACTCGCTT 62.732 55.000 0.00 0.00 41.46 4.68
4913 5423 2.665185 GCCCGACACACTCGCTTT 60.665 61.111 0.00 0.00 41.46 3.51
4926 5436 5.678483 CACACTCGCTTTGTAATATTGCATC 59.322 40.000 7.08 0.02 0.00 3.91
4937 5447 7.496529 TGTAATATTGCATCTTCTTACAGGC 57.503 36.000 1.68 0.00 0.00 4.85
4953 5463 8.306313 TCTTACAGGCTCTCAAAATGTATAGA 57.694 34.615 0.00 0.00 0.00 1.98
4954 5464 8.417106 TCTTACAGGCTCTCAAAATGTATAGAG 58.583 37.037 0.00 0.00 38.79 2.43
4956 5466 6.344500 ACAGGCTCTCAAAATGTATAGAGTG 58.656 40.000 0.00 0.00 38.18 3.51
4981 5491 6.444633 CAGATGAGCATTTCACTGTTCTTTT 58.555 36.000 0.00 0.00 38.99 2.27
4982 5492 6.921857 CAGATGAGCATTTCACTGTTCTTTTT 59.078 34.615 0.00 0.00 38.99 1.94
4983 5493 6.921857 AGATGAGCATTTCACTGTTCTTTTTG 59.078 34.615 0.00 0.00 38.99 2.44
4984 5494 6.206395 TGAGCATTTCACTGTTCTTTTTGA 57.794 33.333 0.00 0.00 0.00 2.69
4985 5495 6.629128 TGAGCATTTCACTGTTCTTTTTGAA 58.371 32.000 0.00 0.00 0.00 2.69
5079 5589 6.636850 CCAATCAGACTTAGTTTTTCGTTTGG 59.363 38.462 0.00 0.00 0.00 3.28
5098 6032 4.850859 TGGCGAATTTCTACGTTATGTG 57.149 40.909 0.00 0.00 0.00 3.21
5150 6084 6.656632 TGGTATTTGTTGCCTAACATCAAA 57.343 33.333 4.84 4.84 46.60 2.69
5156 6090 5.913137 TGTTGCCTAACATCAAATTAGGG 57.087 39.130 11.72 0.00 46.10 3.53
5157 6091 4.709397 TGTTGCCTAACATCAAATTAGGGG 59.291 41.667 11.72 0.00 46.10 4.79
5158 6092 3.295973 TGCCTAACATCAAATTAGGGGC 58.704 45.455 11.72 0.00 46.10 5.80
5159 6093 2.293399 GCCTAACATCAAATTAGGGGCG 59.707 50.000 11.72 0.00 46.10 6.13
5160 6094 2.884639 CCTAACATCAAATTAGGGGCGG 59.115 50.000 3.30 0.00 43.45 6.13
5161 6095 1.775385 AACATCAAATTAGGGGCGGG 58.225 50.000 0.00 0.00 0.00 6.13
5162 6096 0.629058 ACATCAAATTAGGGGCGGGT 59.371 50.000 0.00 0.00 0.00 5.28
5163 6097 1.032014 CATCAAATTAGGGGCGGGTG 58.968 55.000 0.00 0.00 0.00 4.61
5164 6098 0.629058 ATCAAATTAGGGGCGGGTGT 59.371 50.000 0.00 0.00 0.00 4.16
5165 6099 0.034863 TCAAATTAGGGGCGGGTGTC 60.035 55.000 0.00 0.00 0.00 3.67
5166 6100 1.035385 CAAATTAGGGGCGGGTGTCC 61.035 60.000 0.00 0.00 40.02 4.02
5167 6101 1.502527 AAATTAGGGGCGGGTGTCCA 61.503 55.000 0.00 0.00 43.76 4.02
5168 6102 1.286305 AATTAGGGGCGGGTGTCCAT 61.286 55.000 0.00 0.00 43.76 3.41
5169 6103 1.994885 ATTAGGGGCGGGTGTCCATG 61.995 60.000 0.00 0.00 43.76 3.66
5170 6104 3.935456 TAGGGGCGGGTGTCCATGT 62.935 63.158 0.00 0.00 43.76 3.21
5171 6105 2.533037 TAGGGGCGGGTGTCCATGTA 62.533 60.000 0.00 0.00 43.76 2.29
5172 6106 2.189521 GGGCGGGTGTCCATGTAG 59.810 66.667 0.00 0.00 40.65 2.74
5173 6107 2.189521 GGCGGGTGTCCATGTAGG 59.810 66.667 0.00 0.00 39.47 3.18
5174 6108 2.513897 GCGGGTGTCCATGTAGGC 60.514 66.667 0.00 0.00 37.29 3.93
5175 6109 2.202878 CGGGTGTCCATGTAGGCG 60.203 66.667 0.00 0.00 37.29 5.52
5176 6110 2.189521 GGGTGTCCATGTAGGCGG 59.810 66.667 0.00 0.00 37.29 6.13
5177 6111 2.513897 GGTGTCCATGTAGGCGGC 60.514 66.667 0.00 0.00 37.29 6.53
5178 6112 2.513897 GTGTCCATGTAGGCGGCC 60.514 66.667 12.11 12.11 37.29 6.13
5179 6113 2.687200 TGTCCATGTAGGCGGCCT 60.687 61.111 26.95 26.95 37.29 5.19
5180 6114 2.297895 TGTCCATGTAGGCGGCCTT 61.298 57.895 29.02 6.32 37.29 4.35
5181 6115 1.819632 GTCCATGTAGGCGGCCTTG 60.820 63.158 29.02 19.15 37.29 3.61
5182 6116 3.211963 CCATGTAGGCGGCCTTGC 61.212 66.667 29.02 20.15 34.61 4.01
5183 6117 2.438254 CATGTAGGCGGCCTTGCA 60.438 61.111 29.02 24.90 34.61 4.08
5184 6118 2.045708 CATGTAGGCGGCCTTGCAA 61.046 57.895 29.02 5.88 34.61 4.08
5185 6119 1.076777 ATGTAGGCGGCCTTGCAAT 60.077 52.632 29.02 12.71 34.61 3.56
5186 6120 0.684153 ATGTAGGCGGCCTTGCAATT 60.684 50.000 29.02 9.88 34.61 2.32
5187 6121 0.897863 TGTAGGCGGCCTTGCAATTT 60.898 50.000 29.02 2.08 34.61 1.82
5188 6122 1.099689 GTAGGCGGCCTTGCAATTTA 58.900 50.000 29.02 2.77 34.61 1.40
5189 6123 1.474879 GTAGGCGGCCTTGCAATTTAA 59.525 47.619 29.02 1.90 34.61 1.52
5190 6124 0.972883 AGGCGGCCTTGCAATTTAAA 59.027 45.000 17.69 0.00 36.28 1.52
5191 6125 1.346068 AGGCGGCCTTGCAATTTAAAA 59.654 42.857 17.69 0.00 36.28 1.52
5192 6126 2.147150 GGCGGCCTTGCAATTTAAAAA 58.853 42.857 12.87 0.00 36.28 1.94
5213 6147 0.944386 CCAAACAGGTGAGGTTGTCG 59.056 55.000 0.00 0.00 0.00 4.35
5214 6148 0.944386 CAAACAGGTGAGGTTGTCGG 59.056 55.000 0.00 0.00 0.00 4.79
5215 6149 0.544697 AAACAGGTGAGGTTGTCGGT 59.455 50.000 0.00 0.00 0.00 4.69
5216 6150 0.544697 AACAGGTGAGGTTGTCGGTT 59.455 50.000 0.00 0.00 0.00 4.44
5217 6151 0.544697 ACAGGTGAGGTTGTCGGTTT 59.455 50.000 0.00 0.00 0.00 3.27
5218 6152 1.764134 ACAGGTGAGGTTGTCGGTTTA 59.236 47.619 0.00 0.00 0.00 2.01
5219 6153 2.224209 ACAGGTGAGGTTGTCGGTTTAG 60.224 50.000 0.00 0.00 0.00 1.85
5220 6154 1.346722 AGGTGAGGTTGTCGGTTTAGG 59.653 52.381 0.00 0.00 0.00 2.69
5221 6155 1.609841 GGTGAGGTTGTCGGTTTAGGG 60.610 57.143 0.00 0.00 0.00 3.53
5222 6156 1.071228 GTGAGGTTGTCGGTTTAGGGT 59.929 52.381 0.00 0.00 0.00 4.34
5223 6157 1.770061 TGAGGTTGTCGGTTTAGGGTT 59.230 47.619 0.00 0.00 0.00 4.11
5224 6158 2.173143 TGAGGTTGTCGGTTTAGGGTTT 59.827 45.455 0.00 0.00 0.00 3.27
5225 6159 3.216800 GAGGTTGTCGGTTTAGGGTTTT 58.783 45.455 0.00 0.00 0.00 2.43
5226 6160 3.633525 GAGGTTGTCGGTTTAGGGTTTTT 59.366 43.478 0.00 0.00 0.00 1.94
5259 6193 6.563222 TTTTTGACAGAAATACGGTAAGGG 57.437 37.500 0.00 0.00 0.00 3.95
5260 6194 5.486735 TTTGACAGAAATACGGTAAGGGA 57.513 39.130 0.00 0.00 0.00 4.20
5262 6196 4.824289 TGACAGAAATACGGTAAGGGAAC 58.176 43.478 0.00 0.00 0.00 3.62
5282 6216 5.705905 GGAACCCCTACAGTATAATTGATGC 59.294 44.000 0.00 0.00 0.00 3.91
5285 6219 6.062095 ACCCCTACAGTATAATTGATGCAAC 58.938 40.000 0.00 0.00 0.00 4.17
5287 6221 6.545666 CCCCTACAGTATAATTGATGCAACAA 59.454 38.462 12.12 12.12 0.00 2.83
5288 6222 7.068103 CCCCTACAGTATAATTGATGCAACAAA 59.932 37.037 13.75 0.00 33.44 2.83
5290 6224 8.677300 CCTACAGTATAATTGATGCAACAAACT 58.323 33.333 13.75 9.43 33.44 2.66
5291 6225 9.708222 CTACAGTATAATTGATGCAACAAACTC 57.292 33.333 13.75 3.64 33.44 3.01
5292 6226 8.109705 ACAGTATAATTGATGCAACAAACTCA 57.890 30.769 13.75 0.00 33.44 3.41
5293 6227 8.575589 ACAGTATAATTGATGCAACAAACTCAA 58.424 29.630 13.75 7.05 33.44 3.02
5298 6232 5.406767 TTGATGCAACAAACTCAAATTGC 57.593 34.783 6.97 0.94 46.08 3.56
5303 6237 5.964887 GCAACAAACTCAAATTGCAAGTA 57.035 34.783 4.94 0.00 45.38 2.24
5304 6238 6.529463 GCAACAAACTCAAATTGCAAGTAT 57.471 33.333 4.94 0.00 45.38 2.12
5306 6240 6.200665 GCAACAAACTCAAATTGCAAGTATCA 59.799 34.615 4.94 0.00 45.38 2.15
5307 6241 7.095523 GCAACAAACTCAAATTGCAAGTATCAT 60.096 33.333 4.94 0.00 45.38 2.45
5308 6242 7.878477 ACAAACTCAAATTGCAAGTATCATG 57.122 32.000 4.94 0.00 0.00 3.07
5311 6245 5.872635 ACTCAAATTGCAAGTATCATGTCG 58.127 37.500 4.94 0.00 0.00 4.35
5313 6247 5.630061 TCAAATTGCAAGTATCATGTCGTG 58.370 37.500 4.94 0.00 0.00 4.35
5314 6248 5.411053 TCAAATTGCAAGTATCATGTCGTGA 59.589 36.000 4.94 0.00 42.06 4.35
5316 6250 4.661993 TTGCAAGTATCATGTCGTGAAC 57.338 40.909 0.00 0.00 40.97 3.18
5317 6251 3.000041 TGCAAGTATCATGTCGTGAACC 59.000 45.455 0.00 0.00 40.97 3.62
5318 6252 3.262420 GCAAGTATCATGTCGTGAACCT 58.738 45.455 0.00 0.00 40.97 3.50
5319 6253 3.062639 GCAAGTATCATGTCGTGAACCTG 59.937 47.826 0.00 1.37 40.97 4.00
5320 6254 3.526931 AGTATCATGTCGTGAACCTGG 57.473 47.619 0.00 0.00 40.97 4.45
5321 6255 2.168521 AGTATCATGTCGTGAACCTGGG 59.831 50.000 0.00 0.00 40.97 4.45
5322 6256 0.984230 ATCATGTCGTGAACCTGGGT 59.016 50.000 0.00 0.00 40.97 4.51
5323 6257 0.034756 TCATGTCGTGAACCTGGGTG 59.965 55.000 0.00 0.00 32.78 4.61
5324 6258 0.955428 CATGTCGTGAACCTGGGTGG 60.955 60.000 0.00 0.00 42.93 4.61
5325 6259 2.032071 GTCGTGAACCTGGGTGGG 59.968 66.667 0.00 0.00 41.11 4.61
5326 6260 2.446994 TCGTGAACCTGGGTGGGT 60.447 61.111 0.00 0.00 42.05 4.51
5327 6261 2.281484 CGTGAACCTGGGTGGGTG 60.281 66.667 0.00 0.00 39.85 4.61
5329 6263 3.897122 TGAACCTGGGTGGGTGCC 61.897 66.667 0.00 0.00 39.85 5.01
5346 6280 4.750289 CCCCCACCACTAGGCTAT 57.250 61.111 0.00 0.00 39.06 2.97
5347 6281 2.145865 CCCCCACCACTAGGCTATG 58.854 63.158 0.00 0.00 39.06 2.23
5348 6282 1.451936 CCCCACCACTAGGCTATGC 59.548 63.158 0.00 0.00 39.06 3.14
5361 6295 3.311486 GGCTATGCCTTAGTCTGCTAG 57.689 52.381 0.73 0.00 46.69 3.42
5367 6301 4.367039 TGCCTTAGTCTGCTAGGTTTTT 57.633 40.909 0.00 0.00 0.00 1.94
5368 6302 5.492855 TGCCTTAGTCTGCTAGGTTTTTA 57.507 39.130 0.00 0.00 0.00 1.52
5369 6303 6.062258 TGCCTTAGTCTGCTAGGTTTTTAT 57.938 37.500 0.00 0.00 0.00 1.40
5370 6304 6.481643 TGCCTTAGTCTGCTAGGTTTTTATT 58.518 36.000 0.00 0.00 0.00 1.40
5371 6305 6.946009 TGCCTTAGTCTGCTAGGTTTTTATTT 59.054 34.615 0.00 0.00 0.00 1.40
5374 6308 8.451748 CCTTAGTCTGCTAGGTTTTTATTTGTC 58.548 37.037 0.00 0.00 0.00 3.18
5375 6309 6.819397 AGTCTGCTAGGTTTTTATTTGTCC 57.181 37.500 0.00 0.00 0.00 4.02
5376 6310 5.411669 AGTCTGCTAGGTTTTTATTTGTCCG 59.588 40.000 0.00 0.00 0.00 4.79
5378 6312 5.766174 TCTGCTAGGTTTTTATTTGTCCGTT 59.234 36.000 0.00 0.00 0.00 4.44
5379 6313 6.004408 TGCTAGGTTTTTATTTGTCCGTTC 57.996 37.500 0.00 0.00 0.00 3.95
5382 6316 7.088272 GCTAGGTTTTTATTTGTCCGTTCATT 58.912 34.615 0.00 0.00 0.00 2.57
5383 6317 7.061789 GCTAGGTTTTTATTTGTCCGTTCATTG 59.938 37.037 0.00 0.00 0.00 2.82
5384 6318 6.220201 AGGTTTTTATTTGTCCGTTCATTGG 58.780 36.000 0.00 0.00 0.00 3.16
5385 6319 5.986741 GGTTTTTATTTGTCCGTTCATTGGT 59.013 36.000 0.00 0.00 0.00 3.67
5386 6320 6.480651 GGTTTTTATTTGTCCGTTCATTGGTT 59.519 34.615 0.00 0.00 0.00 3.67
5388 6322 6.392625 TTTATTTGTCCGTTCATTGGTTCA 57.607 33.333 0.00 0.00 0.00 3.18
5389 6323 6.582677 TTATTTGTCCGTTCATTGGTTCAT 57.417 33.333 0.00 0.00 0.00 2.57
5390 6324 4.927978 TTTGTCCGTTCATTGGTTCATT 57.072 36.364 0.00 0.00 0.00 2.57
5392 6326 4.927978 TGTCCGTTCATTGGTTCATTTT 57.072 36.364 0.00 0.00 0.00 1.82
5393 6327 4.865776 TGTCCGTTCATTGGTTCATTTTC 58.134 39.130 0.00 0.00 0.00 2.29
5394 6328 4.339530 TGTCCGTTCATTGGTTCATTTTCA 59.660 37.500 0.00 0.00 0.00 2.69
5395 6329 5.163509 TGTCCGTTCATTGGTTCATTTTCAA 60.164 36.000 0.00 0.00 0.00 2.69
5397 6331 4.447389 CCGTTCATTGGTTCATTTTCAACC 59.553 41.667 0.00 0.00 43.35 3.77
5443 6377 6.917217 AATTTTCAAAATTTTGACCTCGCA 57.083 29.167 28.78 13.61 45.99 5.10
5448 6642 5.595885 TCAAAATTTTGACCTCGCATCAAA 58.404 33.333 26.01 3.17 41.88 2.69
5451 6645 7.869937 TCAAAATTTTGACCTCGCATCAAATTA 59.130 29.630 26.01 1.81 43.65 1.40
5453 6647 8.776376 AAATTTTGACCTCGCATCAAATTAAT 57.224 26.923 8.68 0.00 43.65 1.40
5456 6650 5.651172 TGACCTCGCATCAAATTAATACG 57.349 39.130 0.00 0.00 0.00 3.06
5457 6651 4.025229 TGACCTCGCATCAAATTAATACGC 60.025 41.667 0.00 0.00 0.00 4.42
5461 6655 6.203915 ACCTCGCATCAAATTAATACGCATAA 59.796 34.615 0.00 0.00 0.00 1.90
5463 6657 8.387354 CCTCGCATCAAATTAATACGCATAATA 58.613 33.333 0.00 0.00 0.00 0.98
5508 6702 7.778185 AACCATGAAGTGTTACTAGTCTAGT 57.222 36.000 16.65 16.65 42.68 2.57
5509 6703 7.778185 ACCATGAAGTGTTACTAGTCTAGTT 57.222 36.000 17.59 0.00 40.14 2.24
5511 6705 7.036220 CCATGAAGTGTTACTAGTCTAGTTGG 58.964 42.308 17.59 11.54 40.14 3.77
5512 6706 7.309867 CCATGAAGTGTTACTAGTCTAGTTGGT 60.310 40.741 17.59 0.00 40.14 3.67
5513 6707 7.592885 TGAAGTGTTACTAGTCTAGTTGGTT 57.407 36.000 17.59 5.42 40.14 3.67
5514 6708 8.696043 TGAAGTGTTACTAGTCTAGTTGGTTA 57.304 34.615 17.59 0.00 40.14 2.85
5515 6709 9.305555 TGAAGTGTTACTAGTCTAGTTGGTTAT 57.694 33.333 17.59 1.91 40.14 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.685660 GGGCCGAATCCTAACTAGGG 59.314 60.000 0.00 0.00 43.79 3.53
76 77 1.985116 GACTCCCAGACGAGGCCTT 60.985 63.158 6.77 0.00 31.00 4.35
77 78 2.363147 GACTCCCAGACGAGGCCT 60.363 66.667 3.86 3.86 31.00 5.19
78 79 2.363147 AGACTCCCAGACGAGGCC 60.363 66.667 0.00 0.00 38.85 5.19
79 80 2.716017 CCAGACTCCCAGACGAGGC 61.716 68.421 0.00 0.00 38.28 4.70
227 235 2.442272 GCAGGGAGGCTACGAGGA 60.442 66.667 0.00 0.00 0.00 3.71
454 484 5.796350 AATAGTGACGTGGAGCATTAAAC 57.204 39.130 0.00 0.00 0.00 2.01
503 534 4.134563 ACAAGAAATAGACACCACACCAC 58.865 43.478 0.00 0.00 0.00 4.16
507 538 6.295249 TCATCAACAAGAAATAGACACCACA 58.705 36.000 0.00 0.00 0.00 4.17
511 542 6.073222 ACGGTTCATCAACAAGAAATAGACAC 60.073 38.462 0.00 0.00 33.70 3.67
567 600 2.083774 GAAAGCATCCATCAACGACCA 58.916 47.619 0.00 0.00 0.00 4.02
657 795 3.991121 CACAATTGCATTCATCAGTTGCA 59.009 39.130 5.05 0.00 44.12 4.08
658 796 3.991773 ACACAATTGCATTCATCAGTTGC 59.008 39.130 5.05 0.00 35.43 4.17
659 797 5.692654 TCAACACAATTGCATTCATCAGTTG 59.307 36.000 5.05 7.06 37.24 3.16
660 798 5.845103 TCAACACAATTGCATTCATCAGTT 58.155 33.333 5.05 0.00 0.00 3.16
662 800 6.096695 TCATCAACACAATTGCATTCATCAG 58.903 36.000 5.05 0.00 0.00 2.90
665 803 5.293324 GCATCATCAACACAATTGCATTCAT 59.707 36.000 5.05 0.00 0.00 2.57
666 804 4.627900 GCATCATCAACACAATTGCATTCA 59.372 37.500 5.05 0.00 0.00 2.57
724 862 7.633193 ACAATCAAAACACACAGGTAAACTA 57.367 32.000 0.00 0.00 0.00 2.24
750 888 5.932303 GTGCACAAGAAATACTCCTAGACAA 59.068 40.000 13.17 0.00 0.00 3.18
751 889 5.479306 GTGCACAAGAAATACTCCTAGACA 58.521 41.667 13.17 0.00 0.00 3.41
752 890 4.563184 CGTGCACAAGAAATACTCCTAGAC 59.437 45.833 18.64 0.00 0.00 2.59
754 892 3.865745 CCGTGCACAAGAAATACTCCTAG 59.134 47.826 18.64 0.00 0.00 3.02
756 894 2.699954 CCGTGCACAAGAAATACTCCT 58.300 47.619 18.64 0.00 0.00 3.69
757 895 1.130561 GCCGTGCACAAGAAATACTCC 59.869 52.381 18.64 0.00 0.00 3.85
759 897 1.890876 TGCCGTGCACAAGAAATACT 58.109 45.000 18.64 0.00 31.71 2.12
801 939 3.245443 TGGCACTATTTTTCTAAGGCCCA 60.245 43.478 0.00 0.00 39.38 5.36
1008 1152 0.652592 CGCCAAAGTTAGCCTCATCG 59.347 55.000 0.00 0.00 0.00 3.84
1064 1208 6.260050 CCGCAGCTTATTAGGATGAAACTTTA 59.740 38.462 0.00 0.00 0.00 1.85
1120 1264 5.356426 TGTATGATTGGGTACAACAGATCG 58.644 41.667 0.00 0.00 39.87 3.69
1139 1283 6.114187 TCTCATCACTTGTTTCCACTGTAT 57.886 37.500 0.00 0.00 0.00 2.29
1203 1347 9.907576 GAAGATGTTATTTCTTGATTCGTAGTG 57.092 33.333 0.00 0.00 33.65 2.74
1204 1348 8.808529 CGAAGATGTTATTTCTTGATTCGTAGT 58.191 33.333 0.00 0.00 33.65 2.73
1222 1366 1.343465 ACCAAGAACGGTCGAAGATGT 59.657 47.619 0.00 0.00 40.67 3.06
1231 1375 2.101249 TCGTTTCACTACCAAGAACGGT 59.899 45.455 7.02 0.00 43.46 4.83
1282 1426 5.391310 GCACATCATCAGAAGGTGTGTAAAG 60.391 44.000 18.09 0.00 41.53 1.85
1339 1483 4.081807 TGGATCATCATGAGGATCGTCATC 60.082 45.833 32.59 22.87 46.28 2.92
1446 1590 2.985896 TCCCCAAAGTCAGCTAAATCG 58.014 47.619 0.00 0.00 0.00 3.34
1630 1774 2.471818 CTCATCGTTGCATCCTCTGAG 58.528 52.381 0.00 0.00 0.00 3.35
1785 1929 0.035598 TAGGGCGTAACTTTGCAGCA 59.964 50.000 0.00 0.00 0.00 4.41
1861 2005 5.819379 TGACCTTTAGATTAGCTTCTGCATG 59.181 40.000 0.00 0.00 42.74 4.06
1868 2012 5.250774 TCAACCCTGACCTTTAGATTAGCTT 59.749 40.000 0.00 0.00 0.00 3.74
1915 2059 6.805271 GCATCAGCATATCATATTTGTGAACC 59.195 38.462 0.00 0.00 41.58 3.62
1992 2136 4.978099 TGAGGATTTATCAGCCCATCTTC 58.022 43.478 0.00 0.00 0.00 2.87
2147 2292 8.077836 AGACGAAGCAATATAAAGTGATAAGC 57.922 34.615 0.00 0.00 0.00 3.09
2347 2492 6.742109 AGGTGTTCAAATTTTCATCAGAGTG 58.258 36.000 0.00 0.00 0.00 3.51
2348 2493 6.966534 AGGTGTTCAAATTTTCATCAGAGT 57.033 33.333 0.00 0.00 0.00 3.24
2349 2494 6.145048 GCAAGGTGTTCAAATTTTCATCAGAG 59.855 38.462 0.00 0.00 0.00 3.35
2439 2584 4.887655 ACAAGGACTTAACTTTTGAGGTGG 59.112 41.667 0.00 0.00 0.00 4.61
2451 2596 8.934023 AAATTACCAATGAGACAAGGACTTAA 57.066 30.769 0.00 0.00 0.00 1.85
2543 2688 1.117749 TCTGATCGCTCCCCCTCATG 61.118 60.000 0.00 0.00 0.00 3.07
2647 2792 6.006275 ACAATATGCTCAGATAACCCAACT 57.994 37.500 0.00 0.00 0.00 3.16
2674 2819 9.016438 TCAACAAAATCTTCATCAAGATGATCA 57.984 29.630 13.06 0.00 46.96 2.92
2711 2856 5.220777 CGCCACTATCATTATTTTGTTCGGT 60.221 40.000 0.00 0.00 0.00 4.69
2770 2915 6.234177 TGGATCTTTCTTCCTTGACTTTCTC 58.766 40.000 0.00 0.00 34.17 2.87
2833 2978 6.703165 GCTGTGATTTTTCTGAAGTGGATTTT 59.297 34.615 0.00 0.00 0.00 1.82
2845 2990 2.554032 CTGGTTCGGCTGTGATTTTTCT 59.446 45.455 0.00 0.00 0.00 2.52
2917 3063 3.624861 CAGGCTGTTCTGTCATTGTATCC 59.375 47.826 6.28 0.00 0.00 2.59
3252 3407 4.512571 TGTTTTACTCTACGAAAGGCCAAC 59.487 41.667 5.01 0.00 0.00 3.77
3263 3418 4.233005 GTCCTGACGGTGTTTTACTCTAC 58.767 47.826 0.00 0.00 0.00 2.59
3427 3594 2.848302 GCAAATCGAACTGTAGCATTGC 59.152 45.455 0.00 0.00 35.69 3.56
3618 3831 3.252701 AGCTGCTGTGAAAAGACATCAAG 59.747 43.478 0.00 0.00 0.00 3.02
3871 4259 8.659925 TTTTTGTAACACGTTATTAGAGTCCA 57.340 30.769 0.00 0.00 0.00 4.02
3872 4260 8.768019 ACTTTTTGTAACACGTTATTAGAGTCC 58.232 33.333 0.00 0.00 0.00 3.85
3879 4267 9.925268 CTCTGTAACTTTTTGTAACACGTTATT 57.075 29.630 0.00 0.00 0.00 1.40
3880 4268 8.553696 CCTCTGTAACTTTTTGTAACACGTTAT 58.446 33.333 0.00 0.00 0.00 1.89
3881 4269 7.011295 CCCTCTGTAACTTTTTGTAACACGTTA 59.989 37.037 0.00 0.00 0.00 3.18
3882 4270 6.183360 CCCTCTGTAACTTTTTGTAACACGTT 60.183 38.462 0.00 0.00 0.00 3.99
3883 4271 5.295045 CCCTCTGTAACTTTTTGTAACACGT 59.705 40.000 0.00 0.00 0.00 4.49
3884 4272 5.524646 TCCCTCTGTAACTTTTTGTAACACG 59.475 40.000 0.00 0.00 0.00 4.49
3885 4273 6.541278 ACTCCCTCTGTAACTTTTTGTAACAC 59.459 38.462 0.00 0.00 0.00 3.32
3886 4274 6.540914 CACTCCCTCTGTAACTTTTTGTAACA 59.459 38.462 0.00 0.00 0.00 2.41
3887 4275 6.512903 GCACTCCCTCTGTAACTTTTTGTAAC 60.513 42.308 0.00 0.00 0.00 2.50
3888 4276 5.529800 GCACTCCCTCTGTAACTTTTTGTAA 59.470 40.000 0.00 0.00 0.00 2.41
3889 4277 5.061179 GCACTCCCTCTGTAACTTTTTGTA 58.939 41.667 0.00 0.00 0.00 2.41
3890 4278 3.883489 GCACTCCCTCTGTAACTTTTTGT 59.117 43.478 0.00 0.00 0.00 2.83
3891 4279 4.137543 AGCACTCCCTCTGTAACTTTTTG 58.862 43.478 0.00 0.00 0.00 2.44
3892 4280 4.439253 AGCACTCCCTCTGTAACTTTTT 57.561 40.909 0.00 0.00 0.00 1.94
3893 4281 4.137543 CAAGCACTCCCTCTGTAACTTTT 58.862 43.478 0.00 0.00 0.00 2.27
3894 4282 3.744660 CAAGCACTCCCTCTGTAACTTT 58.255 45.455 0.00 0.00 0.00 2.66
3895 4283 2.551071 GCAAGCACTCCCTCTGTAACTT 60.551 50.000 0.00 0.00 0.00 2.66
3896 4284 1.002544 GCAAGCACTCCCTCTGTAACT 59.997 52.381 0.00 0.00 0.00 2.24
3897 4285 1.002544 AGCAAGCACTCCCTCTGTAAC 59.997 52.381 0.00 0.00 0.00 2.50
3898 4286 1.352083 AGCAAGCACTCCCTCTGTAA 58.648 50.000 0.00 0.00 0.00 2.41
3899 4287 1.825474 GTAGCAAGCACTCCCTCTGTA 59.175 52.381 0.00 0.00 0.00 2.74
3900 4288 0.610687 GTAGCAAGCACTCCCTCTGT 59.389 55.000 0.00 0.00 0.00 3.41
3901 4289 0.901124 AGTAGCAAGCACTCCCTCTG 59.099 55.000 0.00 0.00 0.00 3.35
3902 4290 2.534042 TAGTAGCAAGCACTCCCTCT 57.466 50.000 0.00 0.00 0.00 3.69
3903 4291 3.828875 AATAGTAGCAAGCACTCCCTC 57.171 47.619 0.00 0.00 0.00 4.30
3904 4292 4.576330 AAAATAGTAGCAAGCACTCCCT 57.424 40.909 0.00 0.00 0.00 4.20
3905 4293 6.318900 ACATTAAAATAGTAGCAAGCACTCCC 59.681 38.462 0.00 0.00 0.00 4.30
3906 4294 7.321745 ACATTAAAATAGTAGCAAGCACTCC 57.678 36.000 0.00 0.00 0.00 3.85
3907 4295 8.450964 TCAACATTAAAATAGTAGCAAGCACTC 58.549 33.333 0.00 0.00 0.00 3.51
3908 4296 8.335532 TCAACATTAAAATAGTAGCAAGCACT 57.664 30.769 0.00 0.00 0.00 4.40
3909 4297 8.964420 TTCAACATTAAAATAGTAGCAAGCAC 57.036 30.769 0.00 0.00 0.00 4.40
3944 4332 1.996191 GCCAAAACGTCAGCACAAAAA 59.004 42.857 0.00 0.00 0.00 1.94
3945 4333 1.203523 AGCCAAAACGTCAGCACAAAA 59.796 42.857 0.00 0.00 0.00 2.44
3946 4334 0.814457 AGCCAAAACGTCAGCACAAA 59.186 45.000 0.00 0.00 0.00 2.83
3947 4335 0.814457 AAGCCAAAACGTCAGCACAA 59.186 45.000 0.00 0.00 0.00 3.33
3948 4336 0.100325 CAAGCCAAAACGTCAGCACA 59.900 50.000 0.00 0.00 0.00 4.57
3949 4337 1.208642 GCAAGCCAAAACGTCAGCAC 61.209 55.000 0.00 0.00 0.00 4.40
4016 4404 4.233789 TGCAAAATCGCTACCAAATTGTC 58.766 39.130 0.00 0.00 0.00 3.18
4071 4459 1.722011 ACTTTTGCCGTACCTGATCG 58.278 50.000 0.00 0.00 0.00 3.69
4203 4591 7.875971 AGAGTTAGGTTAAGCAAAATCACAAG 58.124 34.615 7.52 0.00 0.00 3.16
4204 4592 7.817418 AGAGTTAGGTTAAGCAAAATCACAA 57.183 32.000 7.52 0.00 0.00 3.33
4339 4735 2.158813 TCCAGTGTTCCCTTCAGTTGAC 60.159 50.000 0.00 0.00 0.00 3.18
4434 4923 3.009473 CCCTTCTTTGACCTCAGATTGGA 59.991 47.826 0.00 0.00 0.00 3.53
4468 4957 3.014304 ACATCATCAGCATTTCCAGCT 57.986 42.857 0.00 0.00 44.62 4.24
4614 5123 0.100682 TCTCGCATCACTAACTCGCC 59.899 55.000 0.00 0.00 0.00 5.54
4750 5260 2.622064 ACTTCAGCAACTTTCGAGGT 57.378 45.000 0.00 0.00 0.00 3.85
4794 5304 2.113433 GCCATCAGCTCTGCACCTG 61.113 63.158 0.00 0.00 38.99 4.00
4901 5411 4.454161 TGCAATATTACAAAGCGAGTGTGT 59.546 37.500 0.00 0.00 0.00 3.72
4906 5416 6.952743 AGAAGATGCAATATTACAAAGCGAG 58.047 36.000 0.00 0.00 0.00 5.03
4908 5418 8.122330 TGTAAGAAGATGCAATATTACAAAGCG 58.878 33.333 12.47 0.00 32.02 4.68
4909 5419 9.443283 CTGTAAGAAGATGCAATATTACAAAGC 57.557 33.333 14.53 0.00 33.96 3.51
4912 5422 7.775093 AGCCTGTAAGAAGATGCAATATTACAA 59.225 33.333 14.53 4.47 33.96 2.41
4913 5423 7.282585 AGCCTGTAAGAAGATGCAATATTACA 58.717 34.615 13.55 13.55 34.07 2.41
4926 5436 7.856145 ATACATTTTGAGAGCCTGTAAGAAG 57.144 36.000 0.00 0.00 34.07 2.85
4937 5447 7.924947 TCATCTGCACTCTATACATTTTGAGAG 59.075 37.037 0.00 0.00 41.06 3.20
4953 5463 2.747989 CAGTGAAATGCTCATCTGCACT 59.252 45.455 0.00 0.00 46.33 4.40
4954 5464 2.486982 ACAGTGAAATGCTCATCTGCAC 59.513 45.455 0.00 0.00 46.33 4.57
4956 5466 3.439476 AGAACAGTGAAATGCTCATCTGC 59.561 43.478 0.00 0.00 37.00 4.26
4981 5491 4.700213 GCTGGCTGTAAAAGTATCCTTCAA 59.300 41.667 0.00 0.00 0.00 2.69
4982 5492 4.261801 GCTGGCTGTAAAAGTATCCTTCA 58.738 43.478 0.00 0.00 0.00 3.02
4983 5493 4.095036 GTGCTGGCTGTAAAAGTATCCTTC 59.905 45.833 0.00 0.00 0.00 3.46
4984 5494 4.010349 GTGCTGGCTGTAAAAGTATCCTT 58.990 43.478 0.00 0.00 0.00 3.36
4985 5495 3.009033 TGTGCTGGCTGTAAAAGTATCCT 59.991 43.478 0.00 0.00 0.00 3.24
5079 5589 5.432157 CATCCACATAACGTAGAAATTCGC 58.568 41.667 0.00 0.00 0.00 4.70
5086 5596 3.527533 GGTTGCATCCACATAACGTAGA 58.472 45.455 9.02 0.00 0.00 2.59
5091 5601 5.789643 ATATTGGGTTGCATCCACATAAC 57.210 39.130 15.63 0.00 33.43 1.89
5098 6032 5.916318 TCATGAAAATATTGGGTTGCATCC 58.084 37.500 5.14 5.14 0.00 3.51
5150 6084 1.696314 ATGGACACCCGCCCCTAAT 60.696 57.895 0.00 0.00 34.29 1.73
5151 6085 2.285818 ATGGACACCCGCCCCTAA 60.286 61.111 0.00 0.00 34.29 2.69
5152 6086 2.533037 TACATGGACACCCGCCCCTA 62.533 60.000 0.00 0.00 34.29 3.53
5153 6087 3.935456 TACATGGACACCCGCCCCT 62.935 63.158 0.00 0.00 34.29 4.79
5154 6088 3.400599 CTACATGGACACCCGCCCC 62.401 68.421 0.00 0.00 34.29 5.80
5155 6089 2.189521 CTACATGGACACCCGCCC 59.810 66.667 0.00 0.00 34.29 6.13
5156 6090 2.189521 CCTACATGGACACCCGCC 59.810 66.667 0.00 0.00 38.35 6.13
5157 6091 2.513897 GCCTACATGGACACCCGC 60.514 66.667 0.00 0.00 38.35 6.13
5158 6092 2.202878 CGCCTACATGGACACCCG 60.203 66.667 0.00 0.00 38.35 5.28
5159 6093 2.189521 CCGCCTACATGGACACCC 59.810 66.667 0.00 0.00 38.35 4.61
5160 6094 2.513897 GCCGCCTACATGGACACC 60.514 66.667 0.00 0.00 38.35 4.16
5161 6095 2.513897 GGCCGCCTACATGGACAC 60.514 66.667 0.71 0.00 38.35 3.67
5162 6096 2.297895 AAGGCCGCCTACATGGACA 61.298 57.895 13.73 0.00 34.89 4.02
5163 6097 1.819632 CAAGGCCGCCTACATGGAC 60.820 63.158 13.73 0.00 38.35 4.02
5164 6098 2.589540 CAAGGCCGCCTACATGGA 59.410 61.111 13.73 0.00 38.35 3.41
5165 6099 3.211963 GCAAGGCCGCCTACATGG 61.212 66.667 13.73 1.55 39.35 3.66
5166 6100 1.386525 ATTGCAAGGCCGCCTACATG 61.387 55.000 13.73 8.89 31.13 3.21
5167 6101 0.684153 AATTGCAAGGCCGCCTACAT 60.684 50.000 13.73 0.00 31.13 2.29
5168 6102 0.897863 AAATTGCAAGGCCGCCTACA 60.898 50.000 13.73 11.73 31.13 2.74
5169 6103 1.099689 TAAATTGCAAGGCCGCCTAC 58.900 50.000 13.73 8.94 31.13 3.18
5170 6104 1.840737 TTAAATTGCAAGGCCGCCTA 58.159 45.000 13.73 0.00 31.13 3.93
5171 6105 0.972883 TTTAAATTGCAAGGCCGCCT 59.027 45.000 5.94 5.94 33.87 5.52
5172 6106 1.802069 TTTTAAATTGCAAGGCCGCC 58.198 45.000 4.94 0.00 0.00 6.13
5194 6128 0.944386 CGACAACCTCACCTGTTTGG 59.056 55.000 0.00 0.00 42.93 3.28
5195 6129 0.944386 CCGACAACCTCACCTGTTTG 59.056 55.000 0.00 0.00 0.00 2.93
5196 6130 0.544697 ACCGACAACCTCACCTGTTT 59.455 50.000 0.00 0.00 0.00 2.83
5197 6131 0.544697 AACCGACAACCTCACCTGTT 59.455 50.000 0.00 0.00 0.00 3.16
5198 6132 0.544697 AAACCGACAACCTCACCTGT 59.455 50.000 0.00 0.00 0.00 4.00
5199 6133 2.413837 CTAAACCGACAACCTCACCTG 58.586 52.381 0.00 0.00 0.00 4.00
5200 6134 1.346722 CCTAAACCGACAACCTCACCT 59.653 52.381 0.00 0.00 0.00 4.00
5201 6135 1.609841 CCCTAAACCGACAACCTCACC 60.610 57.143 0.00 0.00 0.00 4.02
5202 6136 1.071228 ACCCTAAACCGACAACCTCAC 59.929 52.381 0.00 0.00 0.00 3.51
5203 6137 1.426751 ACCCTAAACCGACAACCTCA 58.573 50.000 0.00 0.00 0.00 3.86
5204 6138 2.556144 AACCCTAAACCGACAACCTC 57.444 50.000 0.00 0.00 0.00 3.85
5205 6139 3.301794 AAAACCCTAAACCGACAACCT 57.698 42.857 0.00 0.00 0.00 3.50
5240 6174 4.322953 GGTTCCCTTACCGTATTTCTGTCA 60.323 45.833 0.00 0.00 0.00 3.58
5243 6177 3.538591 GGGTTCCCTTACCGTATTTCTG 58.461 50.000 0.00 0.00 39.18 3.02
5257 6191 5.899631 TCAATTATACTGTAGGGGTTCCC 57.100 43.478 0.00 0.00 45.90 3.97
5259 6193 6.296026 TGCATCAATTATACTGTAGGGGTTC 58.704 40.000 0.00 0.00 0.00 3.62
5260 6194 6.260700 TGCATCAATTATACTGTAGGGGTT 57.739 37.500 0.00 0.00 0.00 4.11
5262 6196 6.061441 TGTTGCATCAATTATACTGTAGGGG 58.939 40.000 0.00 0.00 0.00 4.79
5263 6197 7.566760 TTGTTGCATCAATTATACTGTAGGG 57.433 36.000 6.10 0.00 0.00 3.53
5264 6198 8.677300 AGTTTGTTGCATCAATTATACTGTAGG 58.323 33.333 10.87 0.00 0.00 3.18
5265 6199 9.708222 GAGTTTGTTGCATCAATTATACTGTAG 57.292 33.333 14.34 0.00 0.00 2.74
5266 6200 9.225436 TGAGTTTGTTGCATCAATTATACTGTA 57.775 29.630 14.34 0.00 0.00 2.74
5267 6201 8.109705 TGAGTTTGTTGCATCAATTATACTGT 57.890 30.769 14.34 0.00 0.00 3.55
5268 6202 8.969121 TTGAGTTTGTTGCATCAATTATACTG 57.031 30.769 14.34 0.00 0.00 2.74
5272 6206 8.231837 GCAATTTGAGTTTGTTGCATCAATTAT 58.768 29.630 10.87 0.93 44.63 1.28
5273 6207 7.574496 GCAATTTGAGTTTGTTGCATCAATTA 58.426 30.769 10.87 0.00 44.63 1.40
5275 6209 5.992729 GCAATTTGAGTTTGTTGCATCAAT 58.007 33.333 10.87 0.00 44.63 2.57
5276 6210 5.406767 GCAATTTGAGTTTGTTGCATCAA 57.593 34.783 6.10 6.10 44.63 2.57
5281 6215 4.863152 ACTTGCAATTTGAGTTTGTTGC 57.137 36.364 0.00 2.25 45.27 4.17
5282 6216 7.697352 TGATACTTGCAATTTGAGTTTGTTG 57.303 32.000 0.00 0.00 0.00 3.33
5285 6219 7.201291 CGACATGATACTTGCAATTTGAGTTTG 60.201 37.037 0.00 0.00 0.00 2.93
5287 6221 6.072508 ACGACATGATACTTGCAATTTGAGTT 60.073 34.615 0.00 0.00 0.00 3.01
5288 6222 5.412594 ACGACATGATACTTGCAATTTGAGT 59.587 36.000 0.00 0.00 0.00 3.41
5290 6224 5.411053 TCACGACATGATACTTGCAATTTGA 59.589 36.000 0.00 0.00 29.99 2.69
5291 6225 5.630061 TCACGACATGATACTTGCAATTTG 58.370 37.500 0.00 0.00 29.99 2.32
5292 6226 5.878332 TCACGACATGATACTTGCAATTT 57.122 34.783 0.00 0.00 29.99 1.82
5293 6227 5.391950 GGTTCACGACATGATACTTGCAATT 60.392 40.000 0.00 0.00 37.11 2.32
5295 6229 3.435327 GGTTCACGACATGATACTTGCAA 59.565 43.478 0.00 0.00 37.11 4.08
5296 6230 3.000041 GGTTCACGACATGATACTTGCA 59.000 45.455 0.00 0.00 37.11 4.08
5297 6231 3.062639 CAGGTTCACGACATGATACTTGC 59.937 47.826 0.00 0.00 42.49 4.01
5298 6232 3.618594 CCAGGTTCACGACATGATACTTG 59.381 47.826 0.00 0.00 42.49 3.16
5299 6233 3.369471 CCCAGGTTCACGACATGATACTT 60.369 47.826 0.00 0.00 42.49 2.24
5301 6235 2.093658 ACCCAGGTTCACGACATGATAC 60.094 50.000 0.00 0.00 42.49 2.24
5303 6237 0.984230 ACCCAGGTTCACGACATGAT 59.016 50.000 0.00 0.00 42.49 2.45
5304 6238 0.034756 CACCCAGGTTCACGACATGA 59.965 55.000 0.00 0.00 42.49 3.07
5306 6240 1.374947 CCACCCAGGTTCACGACAT 59.625 57.895 0.00 0.00 0.00 3.06
5307 6241 2.813726 CCCACCCAGGTTCACGACA 61.814 63.158 0.00 0.00 34.66 4.35
5308 6242 2.032071 CCCACCCAGGTTCACGAC 59.968 66.667 0.00 0.00 34.66 4.34
5311 6245 2.597510 GCACCCACCCAGGTTCAC 60.598 66.667 0.00 0.00 38.39 3.18
5329 6263 2.056906 GCATAGCCTAGTGGTGGGGG 62.057 65.000 0.00 0.00 35.27 5.40
5331 6265 1.451936 GGCATAGCCTAGTGGTGGG 59.548 63.158 0.00 0.00 46.69 4.61
5342 6276 2.630580 ACCTAGCAGACTAAGGCATAGC 59.369 50.000 0.00 0.00 34.78 2.97
5344 6278 5.693769 AAAACCTAGCAGACTAAGGCATA 57.306 39.130 0.00 0.00 0.00 3.14
5346 6280 4.367039 AAAAACCTAGCAGACTAAGGCA 57.633 40.909 0.00 0.00 0.00 4.75
5347 6281 7.094334 ACAAATAAAAACCTAGCAGACTAAGGC 60.094 37.037 0.00 0.00 0.00 4.35
5348 6282 8.336801 ACAAATAAAAACCTAGCAGACTAAGG 57.663 34.615 0.00 0.00 0.00 2.69
5351 6285 6.592607 CGGACAAATAAAAACCTAGCAGACTA 59.407 38.462 0.00 0.00 0.00 2.59
5353 6287 5.180680 ACGGACAAATAAAAACCTAGCAGAC 59.819 40.000 0.00 0.00 0.00 3.51
5354 6288 5.310451 ACGGACAAATAAAAACCTAGCAGA 58.690 37.500 0.00 0.00 0.00 4.26
5358 6292 7.540745 CCAATGAACGGACAAATAAAAACCTAG 59.459 37.037 0.00 0.00 0.00 3.02
5359 6293 7.014422 ACCAATGAACGGACAAATAAAAACCTA 59.986 33.333 0.00 0.00 0.00 3.08
5360 6294 6.183360 ACCAATGAACGGACAAATAAAAACCT 60.183 34.615 0.00 0.00 0.00 3.50
5361 6295 5.986741 ACCAATGAACGGACAAATAAAAACC 59.013 36.000 0.00 0.00 0.00 3.27
5367 6301 6.582677 AATGAACCAATGAACGGACAAATA 57.417 33.333 0.00 0.00 0.00 1.40
5368 6302 5.467035 AATGAACCAATGAACGGACAAAT 57.533 34.783 0.00 0.00 0.00 2.32
5369 6303 4.927978 AATGAACCAATGAACGGACAAA 57.072 36.364 0.00 0.00 0.00 2.83
5370 6304 4.927978 AAATGAACCAATGAACGGACAA 57.072 36.364 0.00 0.00 0.00 3.18
5371 6305 4.339530 TGAAAATGAACCAATGAACGGACA 59.660 37.500 0.00 0.00 0.00 4.02
5374 6308 4.447389 GGTTGAAAATGAACCAATGAACGG 59.553 41.667 0.00 0.00 42.26 4.44
5375 6309 5.574815 GGTTGAAAATGAACCAATGAACG 57.425 39.130 0.00 0.00 42.26 3.95
5425 6359 4.844998 TGATGCGAGGTCAAAATTTTGA 57.155 36.364 26.01 26.01 44.31 2.69
5427 6361 8.600449 TTAATTTGATGCGAGGTCAAAATTTT 57.400 26.923 12.22 0.00 45.50 1.82
5428 6362 8.776376 ATTAATTTGATGCGAGGTCAAAATTT 57.224 26.923 12.22 7.55 45.50 1.82
5429 6363 9.301153 GTATTAATTTGATGCGAGGTCAAAATT 57.699 29.630 12.22 6.74 45.50 1.82
5430 6364 7.643764 CGTATTAATTTGATGCGAGGTCAAAAT 59.356 33.333 5.88 8.21 45.50 1.82
5432 6366 6.482835 CGTATTAATTTGATGCGAGGTCAAA 58.517 36.000 5.88 11.07 46.16 2.69
5433 6367 5.503357 GCGTATTAATTTGATGCGAGGTCAA 60.503 40.000 14.17 0.00 35.09 3.18
5434 6368 4.025229 GCGTATTAATTTGATGCGAGGTCA 60.025 41.667 14.17 0.00 35.09 4.02
5436 6370 3.874543 TGCGTATTAATTTGATGCGAGGT 59.125 39.130 14.17 0.00 35.09 3.85
5438 6372 9.920826 ATATTATGCGTATTAATTTGATGCGAG 57.079 29.630 14.17 0.00 35.09 5.03
5483 6677 8.191534 ACTAGACTAGTAACACTTCATGGTTT 57.808 34.615 13.63 0.00 37.23 3.27
5486 6680 7.036220 CCAACTAGACTAGTAACACTTCATGG 58.964 42.308 15.51 11.69 38.26 3.66
5489 6683 7.592885 AACCAACTAGACTAGTAACACTTCA 57.407 36.000 15.51 0.00 38.26 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.