Multiple sequence alignment - TraesCS1B01G325100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G325100 chr1B 100.000 4451 0 0 285 4735 551014778 551010328 0.000000e+00 8220.0
1 TraesCS1B01G325100 chr1B 100.000 132 0 0 1 132 551015062 551014931 1.320000e-60 244.0
2 TraesCS1B01G325100 chr1B 97.727 132 3 0 1 132 536646042 536645911 1.330000e-55 228.0
3 TraesCS1B01G325100 chr1B 97.727 132 3 0 1 132 567883198 567883329 1.330000e-55 228.0
4 TraesCS1B01G325100 chr1A 94.063 3436 135 36 1246 4648 505273764 505270365 0.000000e+00 5151.0
5 TraesCS1B01G325100 chr1A 95.522 335 6 8 849 1175 505274435 505274102 1.170000e-145 527.0
6 TraesCS1B01G325100 chr1A 95.946 74 2 1 4662 4735 505270377 505270305 8.320000e-23 119.0
7 TraesCS1B01G325100 chr1D 95.233 2811 91 24 1845 4648 409051292 409048518 0.000000e+00 4409.0
8 TraesCS1B01G325100 chr1D 91.390 1115 71 12 724 1833 409052427 409051333 0.000000e+00 1504.0
9 TraesCS1B01G325100 chr1D 89.431 123 13 0 288 410 409052799 409052677 6.340000e-34 156.0
10 TraesCS1B01G325100 chr1D 97.297 74 1 1 4662 4735 409048530 409048458 1.790000e-24 124.0
11 TraesCS1B01G325100 chr1D 84.956 113 16 1 405 516 11419336 11419448 3.870000e-21 113.0
12 TraesCS1B01G325100 chr4D 84.528 265 34 3 514 772 477152645 477152382 6.080000e-64 255.0
13 TraesCS1B01G325100 chr5D 88.208 212 23 2 514 724 548486957 548487167 7.870000e-63 252.0
14 TraesCS1B01G325100 chr3B 88.095 210 22 3 514 722 738196307 738196514 3.660000e-61 246.0
15 TraesCS1B01G325100 chr3B 97.727 132 3 0 1 132 112300392 112300261 1.330000e-55 228.0
16 TraesCS1B01G325100 chr3B 92.135 89 7 0 427 515 452550934 452551022 4.970000e-25 126.0
17 TraesCS1B01G325100 chr3B 86.916 107 13 1 409 515 820454700 820454595 8.320000e-23 119.0
18 TraesCS1B01G325100 chr2D 87.204 211 23 4 514 722 50658554 50658762 2.200000e-58 237.0
19 TraesCS1B01G325100 chr2D 92.135 89 7 0 409 497 539879567 539879479 4.970000e-25 126.0
20 TraesCS1B01G325100 chr6A 86.730 211 27 1 514 724 528993818 528994027 2.850000e-57 233.0
21 TraesCS1B01G325100 chr6A 87.192 203 25 1 522 724 12310909 12310708 3.690000e-56 230.0
22 TraesCS1B01G325100 chr7B 97.727 132 3 0 1 132 49249959 49250090 1.330000e-55 228.0
23 TraesCS1B01G325100 chr7B 97.727 132 3 0 1 132 692821410 692821279 1.330000e-55 228.0
24 TraesCS1B01G325100 chr6B 97.727 132 3 0 1 132 82117422 82117291 1.330000e-55 228.0
25 TraesCS1B01G325100 chr6B 97.727 132 3 0 1 132 83688281 83688150 1.330000e-55 228.0
26 TraesCS1B01G325100 chr6B 97.727 132 3 0 1 132 635225410 635225279 1.330000e-55 228.0
27 TraesCS1B01G325100 chr6B 86.321 212 23 5 514 724 261662707 261662501 4.770000e-55 226.0
28 TraesCS1B01G325100 chr6B 77.344 128 29 0 1547 1674 705836620 705836493 5.080000e-10 76.8
29 TraesCS1B01G325100 chr6B 100.000 31 0 0 486 516 42582147 42582117 1.840000e-04 58.4
30 TraesCS1B01G325100 chr2B 97.727 132 3 0 1 132 34333727 34333858 1.330000e-55 228.0
31 TraesCS1B01G325100 chr2B 86.321 212 24 5 514 724 74411099 74411306 4.770000e-55 226.0
32 TraesCS1B01G325100 chr4A 85.646 209 28 2 514 722 14251630 14251836 7.980000e-53 219.0
33 TraesCS1B01G325100 chr4A 92.135 89 7 0 409 497 590222037 590222125 4.970000e-25 126.0
34 TraesCS1B01G325100 chr5A 89.815 108 11 0 409 516 49938296 49938189 6.390000e-29 139.0
35 TraesCS1B01G325100 chr5A 90.426 94 8 1 405 497 446022578 446022485 6.430000e-24 122.0
36 TraesCS1B01G325100 chr6D 88.785 107 12 0 409 515 2404854 2404748 1.070000e-26 132.0
37 TraesCS1B01G325100 chr4B 92.135 89 7 0 427 515 24837227 24837139 4.970000e-25 126.0
38 TraesCS1B01G325100 chr2A 83.969 131 15 4 1811 1941 158799963 158799839 2.310000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G325100 chr1B 551010328 551015062 4734 True 4232.000000 8220 100.00000 1 4735 2 chr1B.!!$R2 4734
1 TraesCS1B01G325100 chr1A 505270305 505274435 4130 True 1932.333333 5151 95.17700 849 4735 3 chr1A.!!$R1 3886
2 TraesCS1B01G325100 chr1D 409048458 409052799 4341 True 1548.250000 4409 93.33775 288 4735 4 chr1D.!!$R1 4447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 506 0.237498 GGGACAAGCTTTTCCGAACG 59.763 55.0 22.30 0.3 32.00 3.95 F
513 514 0.320697 CTTTTCCGAACGGAGGGAGT 59.679 55.0 15.34 0.0 46.06 3.85 F
535 536 0.792031 CACGGTAACTTACGCAACCC 59.208 55.0 0.00 0.0 0.00 4.11 F
702 703 0.953471 GTTGTGGTGGTGCGCTATGA 60.953 55.0 9.73 0.0 0.00 2.15 F
2463 2844 0.482446 AAATTGGTGGCTGACCTGGA 59.518 50.0 0.00 0.0 46.32 3.86 F
2736 3119 1.741528 TGATGCTATGCACCACACAG 58.258 50.0 0.00 0.0 43.04 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 2020 0.108089 GGAAAAGGGCGAGAGAGGTC 60.108 60.000 0.00 0.0 0.00 3.85 R
2290 2665 1.588824 CCGCAATGCCAAGAAGCTCA 61.589 55.000 0.00 0.0 0.00 4.26 R
2463 2844 2.435437 AGGAGCAAAACAGCACCATTTT 59.565 40.909 5.28 0.0 46.13 1.82 R
2548 2929 3.430042 ACAAACAGATCTGCCAGTGAT 57.570 42.857 22.83 0.0 0.00 3.06 R
3496 3882 1.149288 ACTACAGGAGAGGGGTCACAA 59.851 52.381 0.00 0.0 0.00 3.33 R
4189 4575 1.530441 CGCTGATGCTTTCAATGGTCG 60.530 52.381 0.00 0.0 36.97 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.748461 TTCTTTTGAACGCTTCCACG 57.252 45.000 0.00 0.00 39.50 4.94
29 30 0.306533 TCTTTTGAACGCTTCCACGC 59.693 50.000 0.00 0.00 36.19 5.34
37 38 4.806571 GCTTCCACGCGATCTACA 57.193 55.556 15.93 0.00 0.00 2.74
38 39 3.044809 GCTTCCACGCGATCTACAA 57.955 52.632 15.93 0.00 0.00 2.41
39 40 1.355971 GCTTCCACGCGATCTACAAA 58.644 50.000 15.93 0.00 0.00 2.83
40 41 1.324736 GCTTCCACGCGATCTACAAAG 59.675 52.381 15.93 7.39 0.00 2.77
41 42 2.607187 CTTCCACGCGATCTACAAAGT 58.393 47.619 15.93 0.00 0.00 2.66
42 43 1.990799 TCCACGCGATCTACAAAGTG 58.009 50.000 15.93 0.00 0.00 3.16
43 44 0.999406 CCACGCGATCTACAAAGTGG 59.001 55.000 15.93 0.91 42.31 4.00
44 45 1.671850 CCACGCGATCTACAAAGTGGT 60.672 52.381 15.93 0.00 42.83 4.16
45 46 2.416296 CCACGCGATCTACAAAGTGGTA 60.416 50.000 15.93 0.00 42.83 3.25
46 47 3.444916 CACGCGATCTACAAAGTGGTAT 58.555 45.455 15.93 0.00 0.00 2.73
47 48 3.242944 CACGCGATCTACAAAGTGGTATG 59.757 47.826 15.93 0.00 0.00 2.39
48 49 3.119245 ACGCGATCTACAAAGTGGTATGT 60.119 43.478 15.93 0.00 0.00 2.29
49 50 4.096833 ACGCGATCTACAAAGTGGTATGTA 59.903 41.667 15.93 0.00 0.00 2.29
50 51 4.675565 CGCGATCTACAAAGTGGTATGTAG 59.324 45.833 0.00 6.60 46.63 2.74
58 59 6.683974 ACAAAGTGGTATGTAGATGCAATC 57.316 37.500 0.00 0.00 46.04 2.67
70 71 3.766068 GATGCAATCTCTCTCCCATGA 57.234 47.619 0.00 0.00 41.17 3.07
71 72 2.996249 TGCAATCTCTCTCCCATGAC 57.004 50.000 0.00 0.00 0.00 3.06
72 73 2.475155 TGCAATCTCTCTCCCATGACT 58.525 47.619 0.00 0.00 0.00 3.41
73 74 2.433604 TGCAATCTCTCTCCCATGACTC 59.566 50.000 0.00 0.00 0.00 3.36
74 75 2.545532 GCAATCTCTCTCCCATGACTCG 60.546 54.545 0.00 0.00 0.00 4.18
75 76 2.692557 CAATCTCTCTCCCATGACTCGT 59.307 50.000 0.00 0.00 0.00 4.18
76 77 2.516227 TCTCTCTCCCATGACTCGTT 57.484 50.000 0.00 0.00 0.00 3.85
77 78 2.095461 TCTCTCTCCCATGACTCGTTG 58.905 52.381 0.00 0.00 0.00 4.10
78 79 0.532573 TCTCTCCCATGACTCGTTGC 59.467 55.000 0.00 0.00 0.00 4.17
79 80 0.534412 CTCTCCCATGACTCGTTGCT 59.466 55.000 0.00 0.00 0.00 3.91
80 81 0.976641 TCTCCCATGACTCGTTGCTT 59.023 50.000 0.00 0.00 0.00 3.91
81 82 2.166459 CTCTCCCATGACTCGTTGCTTA 59.834 50.000 0.00 0.00 0.00 3.09
82 83 2.166459 TCTCCCATGACTCGTTGCTTAG 59.834 50.000 0.00 0.00 0.00 2.18
83 84 2.166459 CTCCCATGACTCGTTGCTTAGA 59.834 50.000 0.00 0.00 0.00 2.10
84 85 2.766263 TCCCATGACTCGTTGCTTAGAT 59.234 45.455 0.00 0.00 0.00 1.98
85 86 2.868583 CCCATGACTCGTTGCTTAGATG 59.131 50.000 0.00 0.00 0.00 2.90
86 87 3.430790 CCCATGACTCGTTGCTTAGATGA 60.431 47.826 0.00 0.00 0.00 2.92
87 88 4.183865 CCATGACTCGTTGCTTAGATGAA 58.816 43.478 0.00 0.00 0.00 2.57
88 89 4.033358 CCATGACTCGTTGCTTAGATGAAC 59.967 45.833 0.00 0.00 0.00 3.18
89 90 4.521130 TGACTCGTTGCTTAGATGAACT 57.479 40.909 0.00 0.00 0.00 3.01
90 91 4.486090 TGACTCGTTGCTTAGATGAACTC 58.514 43.478 0.00 0.00 0.00 3.01
91 92 4.022329 TGACTCGTTGCTTAGATGAACTCA 60.022 41.667 0.00 0.00 0.00 3.41
92 93 5.078411 ACTCGTTGCTTAGATGAACTCAT 57.922 39.130 0.00 0.00 39.70 2.90
93 94 6.127730 TGACTCGTTGCTTAGATGAACTCATA 60.128 38.462 0.00 0.00 36.57 2.15
94 95 6.269315 ACTCGTTGCTTAGATGAACTCATAG 58.731 40.000 0.00 0.00 36.57 2.23
95 96 6.095580 ACTCGTTGCTTAGATGAACTCATAGA 59.904 38.462 0.00 0.00 36.57 1.98
96 97 7.043961 TCGTTGCTTAGATGAACTCATAGAT 57.956 36.000 0.00 0.00 36.57 1.98
97 98 6.920210 TCGTTGCTTAGATGAACTCATAGATG 59.080 38.462 0.00 0.00 36.57 2.90
98 99 6.145209 CGTTGCTTAGATGAACTCATAGATGG 59.855 42.308 0.00 0.00 36.57 3.51
99 100 6.983906 TGCTTAGATGAACTCATAGATGGA 57.016 37.500 0.00 0.00 36.57 3.41
100 101 7.550597 TGCTTAGATGAACTCATAGATGGAT 57.449 36.000 0.00 0.00 36.57 3.41
101 102 7.609960 TGCTTAGATGAACTCATAGATGGATC 58.390 38.462 0.00 0.00 36.57 3.36
102 103 7.454066 TGCTTAGATGAACTCATAGATGGATCT 59.546 37.037 0.00 0.00 40.86 2.75
103 104 8.313292 GCTTAGATGAACTCATAGATGGATCTT 58.687 37.037 0.00 0.00 38.32 2.40
104 105 9.642327 CTTAGATGAACTCATAGATGGATCTTG 57.358 37.037 0.00 0.00 38.32 3.02
105 106 7.006865 AGATGAACTCATAGATGGATCTTGG 57.993 40.000 0.00 0.00 38.32 3.61
106 107 6.558014 AGATGAACTCATAGATGGATCTTGGT 59.442 38.462 0.00 0.00 38.32 3.67
107 108 5.922053 TGAACTCATAGATGGATCTTGGTG 58.078 41.667 0.00 0.00 38.32 4.17
108 109 5.662657 TGAACTCATAGATGGATCTTGGTGA 59.337 40.000 0.00 0.00 38.32 4.02
109 110 6.156775 TGAACTCATAGATGGATCTTGGTGAA 59.843 38.462 0.00 0.00 38.32 3.18
110 111 6.566079 ACTCATAGATGGATCTTGGTGAAA 57.434 37.500 0.00 0.00 38.32 2.69
111 112 7.146715 ACTCATAGATGGATCTTGGTGAAAT 57.853 36.000 0.00 0.00 38.32 2.17
112 113 7.222872 ACTCATAGATGGATCTTGGTGAAATC 58.777 38.462 0.00 0.00 38.32 2.17
113 114 7.140522 TCATAGATGGATCTTGGTGAAATCA 57.859 36.000 0.00 0.00 38.32 2.57
114 115 7.752638 TCATAGATGGATCTTGGTGAAATCAT 58.247 34.615 0.00 0.00 38.32 2.45
115 116 8.883302 TCATAGATGGATCTTGGTGAAATCATA 58.117 33.333 0.00 0.00 38.32 2.15
116 117 9.163899 CATAGATGGATCTTGGTGAAATCATAG 57.836 37.037 0.00 0.00 38.32 2.23
117 118 6.540995 AGATGGATCTTGGTGAAATCATAGG 58.459 40.000 0.00 0.00 31.97 2.57
118 119 5.974156 TGGATCTTGGTGAAATCATAGGA 57.026 39.130 0.00 0.00 0.00 2.94
119 120 6.325993 TGGATCTTGGTGAAATCATAGGAA 57.674 37.500 0.00 0.00 0.00 3.36
120 121 6.730447 TGGATCTTGGTGAAATCATAGGAAA 58.270 36.000 0.00 0.00 0.00 3.13
121 122 7.356680 TGGATCTTGGTGAAATCATAGGAAAT 58.643 34.615 0.00 0.00 0.00 2.17
122 123 7.840716 TGGATCTTGGTGAAATCATAGGAAATT 59.159 33.333 0.00 0.00 0.00 1.82
123 124 8.699130 GGATCTTGGTGAAATCATAGGAAATTT 58.301 33.333 0.00 0.00 0.00 1.82
318 319 9.125906 GTAAGTATCACGATATTTTACGCATCT 57.874 33.333 0.00 0.00 0.00 2.90
323 324 7.618964 TCACGATATTTTACGCATCTAAGAC 57.381 36.000 0.00 0.00 0.00 3.01
354 355 7.385778 ACTTGTATACAAAACGCATTGGTAT 57.614 32.000 18.55 6.76 35.15 2.73
355 356 7.469260 ACTTGTATACAAAACGCATTGGTATC 58.531 34.615 18.55 0.79 35.15 2.24
371 372 3.141272 TGGTATCTTTGAAAGGGGGTGTT 59.859 43.478 4.94 0.00 0.00 3.32
374 375 3.955524 TCTTTGAAAGGGGGTGTTGTA 57.044 42.857 4.94 0.00 0.00 2.41
378 379 2.938838 TGAAAGGGGGTGTTGTAGTTG 58.061 47.619 0.00 0.00 0.00 3.16
390 391 6.148315 GGGTGTTGTAGTTGAAACATAGTACC 59.852 42.308 0.00 0.00 38.47 3.34
398 399 9.351570 GTAGTTGAAACATAGTACCTGTAAGTC 57.648 37.037 0.00 0.33 0.00 3.01
411 412 9.933240 AGTACCTGTAAGTCCTATGTAAATACT 57.067 33.333 0.00 0.00 0.00 2.12
414 415 8.702819 ACCTGTAAGTCCTATGTAAATACTTCC 58.297 37.037 0.00 0.00 32.85 3.46
415 416 8.925338 CCTGTAAGTCCTATGTAAATACTTCCT 58.075 37.037 0.00 0.00 32.85 3.36
416 417 9.968870 CTGTAAGTCCTATGTAAATACTTCCTC 57.031 37.037 0.00 0.00 32.85 3.71
417 418 9.483489 TGTAAGTCCTATGTAAATACTTCCTCA 57.517 33.333 0.00 0.00 32.85 3.86
418 419 9.968870 GTAAGTCCTATGTAAATACTTCCTCAG 57.031 37.037 0.00 0.00 32.85 3.35
419 420 8.611051 AAGTCCTATGTAAATACTTCCTCAGT 57.389 34.615 0.00 0.00 39.87 3.41
420 421 8.240267 AGTCCTATGTAAATACTTCCTCAGTC 57.760 38.462 0.00 0.00 36.88 3.51
421 422 7.288158 AGTCCTATGTAAATACTTCCTCAGTCC 59.712 40.741 0.00 0.00 36.88 3.85
422 423 6.264744 TCCTATGTAAATACTTCCTCAGTCCG 59.735 42.308 0.00 0.00 36.88 4.79
423 424 6.264744 CCTATGTAAATACTTCCTCAGTCCGA 59.735 42.308 0.00 0.00 36.88 4.55
424 425 5.988310 TGTAAATACTTCCTCAGTCCGAA 57.012 39.130 0.00 0.00 36.88 4.30
425 426 6.349243 TGTAAATACTTCCTCAGTCCGAAA 57.651 37.500 0.00 0.00 36.88 3.46
426 427 6.761312 TGTAAATACTTCCTCAGTCCGAAAA 58.239 36.000 0.00 0.00 36.88 2.29
427 428 7.218614 TGTAAATACTTCCTCAGTCCGAAAAA 58.781 34.615 0.00 0.00 36.88 1.94
428 429 6.803154 AAATACTTCCTCAGTCCGAAAAAG 57.197 37.500 0.00 0.00 36.88 2.27
429 430 3.127425 ACTTCCTCAGTCCGAAAAAGG 57.873 47.619 0.00 0.00 0.00 3.11
430 431 2.438392 ACTTCCTCAGTCCGAAAAAGGT 59.562 45.455 0.00 0.00 0.00 3.50
431 432 3.118000 ACTTCCTCAGTCCGAAAAAGGTT 60.118 43.478 0.00 0.00 0.00 3.50
432 433 2.846193 TCCTCAGTCCGAAAAAGGTTG 58.154 47.619 0.00 0.00 0.00 3.77
433 434 2.171870 TCCTCAGTCCGAAAAAGGTTGT 59.828 45.455 0.00 0.00 0.00 3.32
434 435 2.548480 CCTCAGTCCGAAAAAGGTTGTC 59.452 50.000 0.00 0.00 0.00 3.18
435 436 2.548480 CTCAGTCCGAAAAAGGTTGTCC 59.452 50.000 0.00 0.00 0.00 4.02
448 449 4.118168 AGGTTGTCCTTCAAATGGATGT 57.882 40.909 0.00 0.00 42.12 3.06
449 450 5.255397 AGGTTGTCCTTCAAATGGATGTA 57.745 39.130 0.00 0.00 42.12 2.29
450 451 5.831103 AGGTTGTCCTTCAAATGGATGTAT 58.169 37.500 0.00 0.00 42.12 2.29
451 452 5.888161 AGGTTGTCCTTCAAATGGATGTATC 59.112 40.000 0.00 0.00 42.12 2.24
452 453 5.067805 GGTTGTCCTTCAAATGGATGTATCC 59.932 44.000 3.91 3.91 41.41 2.59
466 467 5.930135 GGATGTATCCACCATCAAGTTAGT 58.070 41.667 6.03 0.00 46.38 2.24
467 468 5.760253 GGATGTATCCACCATCAAGTTAGTG 59.240 44.000 6.03 0.00 46.38 2.74
468 469 4.513442 TGTATCCACCATCAAGTTAGTGC 58.487 43.478 0.00 0.00 0.00 4.40
469 470 4.225042 TGTATCCACCATCAAGTTAGTGCT 59.775 41.667 0.00 0.00 0.00 4.40
470 471 5.423931 TGTATCCACCATCAAGTTAGTGCTA 59.576 40.000 0.00 0.00 0.00 3.49
471 472 4.471904 TCCACCATCAAGTTAGTGCTAG 57.528 45.455 0.00 0.00 0.00 3.42
472 473 4.093743 TCCACCATCAAGTTAGTGCTAGA 58.906 43.478 0.00 0.00 0.00 2.43
473 474 4.716784 TCCACCATCAAGTTAGTGCTAGAT 59.283 41.667 0.00 0.00 0.00 1.98
474 475 5.897250 TCCACCATCAAGTTAGTGCTAGATA 59.103 40.000 0.00 0.00 0.00 1.98
475 476 5.986135 CCACCATCAAGTTAGTGCTAGATAC 59.014 44.000 0.00 0.00 0.00 2.24
476 477 6.406961 CCACCATCAAGTTAGTGCTAGATACA 60.407 42.308 0.00 0.00 0.00 2.29
477 478 7.212976 CACCATCAAGTTAGTGCTAGATACAT 58.787 38.462 0.00 0.00 0.00 2.29
478 479 7.712639 CACCATCAAGTTAGTGCTAGATACATT 59.287 37.037 0.00 0.00 0.00 2.71
479 480 7.928706 ACCATCAAGTTAGTGCTAGATACATTC 59.071 37.037 0.00 0.00 0.00 2.67
480 481 7.928167 CCATCAAGTTAGTGCTAGATACATTCA 59.072 37.037 0.00 0.00 0.00 2.57
481 482 9.486497 CATCAAGTTAGTGCTAGATACATTCAT 57.514 33.333 0.00 0.00 0.00 2.57
483 484 9.890629 TCAAGTTAGTGCTAGATACATTCATTT 57.109 29.630 0.00 0.00 0.00 2.32
484 485 9.926751 CAAGTTAGTGCTAGATACATTCATTTG 57.073 33.333 0.00 0.00 0.00 2.32
485 486 9.890629 AAGTTAGTGCTAGATACATTCATTTGA 57.109 29.630 0.00 0.00 0.00 2.69
486 487 9.539825 AGTTAGTGCTAGATACATTCATTTGAG 57.460 33.333 0.00 0.00 0.00 3.02
487 488 8.768955 GTTAGTGCTAGATACATTCATTTGAGG 58.231 37.037 0.00 0.00 0.00 3.86
488 489 6.294473 AGTGCTAGATACATTCATTTGAGGG 58.706 40.000 0.00 0.00 0.00 4.30
489 490 6.100279 AGTGCTAGATACATTCATTTGAGGGA 59.900 38.462 0.00 0.00 0.00 4.20
490 491 6.203723 GTGCTAGATACATTCATTTGAGGGAC 59.796 42.308 0.00 0.00 0.00 4.46
491 492 6.126796 TGCTAGATACATTCATTTGAGGGACA 60.127 38.462 0.00 0.00 0.00 4.02
492 493 6.767902 GCTAGATACATTCATTTGAGGGACAA 59.232 38.462 0.00 0.00 36.65 3.18
493 494 7.041508 GCTAGATACATTCATTTGAGGGACAAG 60.042 40.741 0.00 0.00 39.77 3.16
494 495 5.591877 AGATACATTCATTTGAGGGACAAGC 59.408 40.000 0.00 0.00 39.77 4.01
495 496 3.771216 ACATTCATTTGAGGGACAAGCT 58.229 40.909 0.00 0.00 39.77 3.74
496 497 4.154942 ACATTCATTTGAGGGACAAGCTT 58.845 39.130 0.00 0.00 39.77 3.74
497 498 4.590222 ACATTCATTTGAGGGACAAGCTTT 59.410 37.500 0.00 0.00 39.77 3.51
498 499 5.070847 ACATTCATTTGAGGGACAAGCTTTT 59.929 36.000 0.00 0.00 39.77 2.27
499 500 4.853924 TCATTTGAGGGACAAGCTTTTC 57.146 40.909 3.91 3.91 39.77 2.29
500 501 3.573967 TCATTTGAGGGACAAGCTTTTCC 59.426 43.478 21.34 21.34 39.77 3.13
501 502 1.604604 TTGAGGGACAAGCTTTTCCG 58.395 50.000 22.30 2.85 34.20 4.30
502 503 0.762418 TGAGGGACAAGCTTTTCCGA 59.238 50.000 22.30 8.64 32.00 4.55
503 504 1.142060 TGAGGGACAAGCTTTTCCGAA 59.858 47.619 22.30 9.82 32.00 4.30
504 505 1.535896 GAGGGACAAGCTTTTCCGAAC 59.464 52.381 22.30 13.43 32.00 3.95
505 506 0.237498 GGGACAAGCTTTTCCGAACG 59.763 55.000 22.30 0.30 32.00 3.95
506 507 0.237498 GGACAAGCTTTTCCGAACGG 59.763 55.000 15.65 6.94 0.00 4.44
507 508 1.223187 GACAAGCTTTTCCGAACGGA 58.777 50.000 12.04 12.04 43.52 4.69
508 509 1.194772 GACAAGCTTTTCCGAACGGAG 59.805 52.381 15.34 6.36 46.06 4.63
509 510 0.517316 CAAGCTTTTCCGAACGGAGG 59.483 55.000 15.34 11.04 46.06 4.30
510 511 0.605589 AAGCTTTTCCGAACGGAGGG 60.606 55.000 15.34 10.74 46.06 4.30
511 512 1.004200 GCTTTTCCGAACGGAGGGA 60.004 57.895 15.34 4.36 46.06 4.20
512 513 1.019805 GCTTTTCCGAACGGAGGGAG 61.020 60.000 15.34 14.45 46.06 4.30
513 514 0.320697 CTTTTCCGAACGGAGGGAGT 59.679 55.000 15.34 0.00 46.06 3.85
514 515 1.547372 CTTTTCCGAACGGAGGGAGTA 59.453 52.381 15.34 0.00 46.06 2.59
515 516 1.180029 TTTCCGAACGGAGGGAGTAG 58.820 55.000 15.34 0.00 46.06 2.57
535 536 0.792031 CACGGTAACTTACGCAACCC 59.208 55.000 0.00 0.00 0.00 4.11
538 539 1.445871 GGTAACTTACGCAACCCAGG 58.554 55.000 0.00 0.00 0.00 4.45
541 542 2.033448 CTTACGCAACCCAGGCCA 59.967 61.111 5.01 0.00 0.00 5.36
554 555 2.086869 CCAGGCCAGATAACTTGTGTG 58.913 52.381 5.01 0.00 0.00 3.82
566 567 3.052455 ACTTGTGTGCGAATACCATGA 57.948 42.857 0.00 0.00 0.00 3.07
568 569 4.009675 ACTTGTGTGCGAATACCATGATT 58.990 39.130 0.00 0.00 0.00 2.57
576 577 6.372937 TGTGCGAATACCATGATTACTTTGAA 59.627 34.615 0.00 0.00 0.00 2.69
577 578 6.687105 GTGCGAATACCATGATTACTTTGAAC 59.313 38.462 0.00 0.00 0.00 3.18
578 579 6.183360 TGCGAATACCATGATTACTTTGAACC 60.183 38.462 0.00 0.00 0.00 3.62
583 584 3.627577 CCATGATTACTTTGAACCGAGGG 59.372 47.826 0.00 0.00 0.00 4.30
606 607 6.151480 GGGGAAATCGTGGTAATTTTCTGTAA 59.849 38.462 0.00 0.00 0.00 2.41
651 652 8.302515 AGGGTCAATACGATTAGTTTTCTCTA 57.697 34.615 0.00 0.00 0.00 2.43
672 673 7.936847 TCTCTAGTTGAGCAACAAATCCTTAAA 59.063 33.333 14.99 0.00 43.47 1.52
702 703 0.953471 GTTGTGGTGGTGCGCTATGA 60.953 55.000 9.73 0.00 0.00 2.15
705 706 1.819208 TGGTGGTGCGCTATGATGC 60.819 57.895 9.73 0.00 0.00 3.91
713 714 1.750930 CGCTATGATGCCAGGGAGT 59.249 57.895 0.00 0.00 0.00 3.85
745 795 1.672356 GAAGCAGCTTTCTCGGGCA 60.672 57.895 9.62 0.00 0.00 5.36
766 816 4.323477 CTGCGGGGTTGTTCGGGA 62.323 66.667 0.00 0.00 0.00 5.14
769 819 3.315949 CGGGGTTGTTCGGGAGGA 61.316 66.667 0.00 0.00 0.00 3.71
771 821 2.669240 GGGTTGTTCGGGAGGAGG 59.331 66.667 0.00 0.00 0.00 4.30
772 822 2.046217 GGTTGTTCGGGAGGAGGC 60.046 66.667 0.00 0.00 0.00 4.70
774 824 1.376037 GTTGTTCGGGAGGAGGCAG 60.376 63.158 0.00 0.00 0.00 4.85
781 831 1.414061 CGGGAGGAGGCAGGATCAAT 61.414 60.000 0.00 0.00 0.00 2.57
782 832 1.734655 GGGAGGAGGCAGGATCAATA 58.265 55.000 0.00 0.00 0.00 1.90
783 833 1.627834 GGGAGGAGGCAGGATCAATAG 59.372 57.143 0.00 0.00 0.00 1.73
786 836 2.975489 GAGGAGGCAGGATCAATAGGAA 59.025 50.000 0.00 0.00 0.00 3.36
787 837 2.978278 AGGAGGCAGGATCAATAGGAAG 59.022 50.000 0.00 0.00 0.00 3.46
789 839 2.708325 GAGGCAGGATCAATAGGAAGGT 59.292 50.000 0.00 0.00 0.00 3.50
798 848 5.237344 GGATCAATAGGAAGGTGATCGTTTG 59.763 44.000 6.76 0.00 45.67 2.93
799 849 4.513442 TCAATAGGAAGGTGATCGTTTGG 58.487 43.478 0.00 0.00 0.00 3.28
814 864 7.536281 GTGATCGTTTGGTACTTTTTACAATCC 59.464 37.037 0.00 0.00 0.00 3.01
837 887 3.305964 CCACACGGTCGACATATATCAC 58.694 50.000 18.91 0.00 0.00 3.06
920 976 4.105486 GTTTGCTTGTCTTGGTCAGTTTC 58.895 43.478 0.00 0.00 0.00 2.78
993 1051 1.068125 TCACACGATGTGTTCTACCCG 60.068 52.381 14.79 0.00 45.08 5.28
1214 1272 4.787280 CCCCACCTCGCTCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
1223 1281 3.151022 GCTCCTCCTCTCCACCCG 61.151 72.222 0.00 0.00 0.00 5.28
1224 1282 2.684104 CTCCTCCTCTCCACCCGA 59.316 66.667 0.00 0.00 0.00 5.14
1232 1290 2.760385 CTCCACCCGACCCTCCTC 60.760 72.222 0.00 0.00 0.00 3.71
1239 1570 2.913060 CGACCCTCCTCCCCGATC 60.913 72.222 0.00 0.00 0.00 3.69
1240 1571 2.524640 GACCCTCCTCCCCGATCC 60.525 72.222 0.00 0.00 0.00 3.36
1241 1572 4.173701 ACCCTCCTCCCCGATCCC 62.174 72.222 0.00 0.00 0.00 3.85
1242 1573 4.172232 CCCTCCTCCCCGATCCCA 62.172 72.222 0.00 0.00 0.00 4.37
1243 1574 2.525381 CCTCCTCCCCGATCCCAG 60.525 72.222 0.00 0.00 0.00 4.45
1244 1575 3.237741 CTCCTCCCCGATCCCAGC 61.238 72.222 0.00 0.00 0.00 4.85
1632 1963 2.053747 TCCCCACCATCAAGTACCTT 57.946 50.000 0.00 0.00 0.00 3.50
1689 2020 3.873812 GTATGCCTCCCCACCCCG 61.874 72.222 0.00 0.00 0.00 5.73
1706 2037 1.592223 CGACCTCTCTCGCCCTTTT 59.408 57.895 0.00 0.00 0.00 2.27
1712 2044 2.047274 TCTCGCCCTTTTCCGCAG 60.047 61.111 0.00 0.00 0.00 5.18
1719 2051 1.401905 GCCCTTTTCCGCAGACTAATG 59.598 52.381 0.00 0.00 0.00 1.90
1728 2060 4.625028 TCCGCAGACTAATGAATGATCTG 58.375 43.478 0.00 0.00 39.84 2.90
1731 2063 5.288015 CGCAGACTAATGAATGATCTGAGT 58.712 41.667 3.80 0.00 39.33 3.41
1732 2064 6.442112 CGCAGACTAATGAATGATCTGAGTA 58.558 40.000 3.80 0.00 39.33 2.59
1736 2068 7.651304 CAGACTAATGAATGATCTGAGTACCAC 59.349 40.741 0.00 0.00 39.33 4.16
1742 2074 9.935241 AATGAATGATCTGAGTACCACATATAC 57.065 33.333 0.00 0.00 0.00 1.47
1744 2076 8.579863 TGAATGATCTGAGTACCACATATACAG 58.420 37.037 0.00 0.00 0.00 2.74
1767 2100 5.995897 AGTACAATGTAGGAAAACACCACTC 59.004 40.000 0.00 0.00 30.75 3.51
1769 2102 3.764237 ATGTAGGAAAACACCACTCGT 57.236 42.857 0.00 0.00 30.75 4.18
1785 2118 4.175787 ACTCGTAGAATGTGAGTGTTCC 57.824 45.455 0.00 0.00 41.21 3.62
1787 2120 3.162666 TCGTAGAATGTGAGTGTTCCCT 58.837 45.455 0.00 0.00 0.00 4.20
1794 2127 6.831976 AGAATGTGAGTGTTCCCTATAATCC 58.168 40.000 0.00 0.00 0.00 3.01
1800 2133 3.956199 AGTGTTCCCTATAATCCGTTCGA 59.044 43.478 0.00 0.00 0.00 3.71
1841 2174 6.810911 ACACATAACACCTAAGCTCTATCTG 58.189 40.000 0.00 0.00 0.00 2.90
1916 2278 5.400066 TGTCCTAAAACGACTGATCATCA 57.600 39.130 0.00 0.00 0.00 3.07
1926 2288 3.285484 GACTGATCATCATTGCCAAGGT 58.715 45.455 0.00 0.00 0.00 3.50
1991 2364 3.449018 ACTTATGTGCTCTGTAGTCCCAG 59.551 47.826 0.00 0.00 0.00 4.45
2007 2380 5.385198 AGTCCCAGAAAAACATTAGCTGAA 58.615 37.500 0.00 0.00 0.00 3.02
2010 2383 7.337942 AGTCCCAGAAAAACATTAGCTGAATAG 59.662 37.037 0.00 0.00 0.00 1.73
2042 2415 5.107837 CCAAATCGTTATGTGATCTCGCTAC 60.108 44.000 0.00 0.00 0.00 3.58
2047 2420 2.967599 ATGTGATCTCGCTACTGCAA 57.032 45.000 0.00 0.00 39.64 4.08
2072 2445 9.877178 AACATTACTTCTCTAGTAGTGAATTGG 57.123 33.333 13.57 6.63 45.19 3.16
2076 2449 6.195700 ACTTCTCTAGTAGTGAATTGGCCTA 58.804 40.000 13.57 0.00 34.56 3.93
2107 2481 5.373812 AATCGTGATACTTTTGGATCCCT 57.626 39.130 9.90 0.00 0.00 4.20
2190 2565 5.184479 GTGCTTATGATATGGCCATGTCATT 59.816 40.000 43.95 32.19 43.97 2.57
2198 2573 7.351166 TGATATGGCCATGTCATTGATATGAT 58.649 34.615 34.01 13.92 42.49 2.45
2199 2574 5.914898 ATGGCCATGTCATTGATATGATG 57.085 39.130 20.04 9.31 42.49 3.07
2200 2575 3.508402 TGGCCATGTCATTGATATGATGC 59.492 43.478 21.06 16.59 42.49 3.91
2208 2583 8.726988 CATGTCATTGATATGATGCTCATAACA 58.273 33.333 16.01 9.64 42.05 2.41
2290 2665 1.134098 CCCCTTGTGCCACGATTATCT 60.134 52.381 0.00 0.00 0.00 1.98
2307 2682 1.171308 TCTGAGCTTCTTGGCATTGC 58.829 50.000 0.00 0.00 34.17 3.56
2342 2723 1.414181 CCACACCATCGAGGCTTCTAT 59.586 52.381 0.00 0.00 43.14 1.98
2356 2737 4.739046 GCTTCTATTCAAGCATATGCGT 57.261 40.909 21.57 16.33 46.93 5.24
2463 2844 0.482446 AAATTGGTGGCTGACCTGGA 59.518 50.000 0.00 0.00 46.32 3.86
2736 3119 1.741528 TGATGCTATGCACCACACAG 58.258 50.000 0.00 0.00 43.04 3.66
3190 3575 5.953183 TCATGCAAGCGTTGAAGATAATTT 58.047 33.333 0.00 0.00 0.00 1.82
3450 3836 5.133221 AGGTAATGCCCTGTGTAATTCATC 58.867 41.667 0.00 0.00 38.26 2.92
3496 3882 9.382275 ACAAATTTGCACAGAAAGAAACTTAAT 57.618 25.926 18.12 0.00 0.00 1.40
3650 4036 3.832237 CTCAACTGGTGGTGGCGCT 62.832 63.158 7.64 0.00 0.00 5.92
3660 4046 3.198489 GTGGCGCTAGCTTGGAGC 61.198 66.667 13.93 8.11 44.37 4.70
3680 4066 2.157738 CTGTTGGAAGGAAAGGAGCTG 58.842 52.381 0.00 0.00 0.00 4.24
3756 4142 2.169179 GCTAAGCTTCATTTTGTCGCG 58.831 47.619 0.00 0.00 0.00 5.87
3760 4146 1.461127 AGCTTCATTTTGTCGCGTCTC 59.539 47.619 5.77 0.00 0.00 3.36
3807 4193 1.077429 GCCATGTTGTCCTCCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
3995 4381 5.393461 GGAATGATGTTGGTTGAGGATGTTC 60.393 44.000 0.00 0.00 0.00 3.18
4009 4395 4.798574 AGGATGTTCGATTTTTGTCTTGC 58.201 39.130 0.00 0.00 0.00 4.01
4038 4424 7.661847 TGTTTTCCTTTCCAAAGCAAACTTTAA 59.338 29.630 17.50 4.31 44.41 1.52
4046 4432 5.420739 TCCAAAGCAAACTTTAAAGGTGTCT 59.579 36.000 19.14 10.35 44.41 3.41
4114 4500 2.800544 CGGTTCATGTCGAAGTTCACTT 59.199 45.455 3.32 0.00 39.23 3.16
4189 4575 0.536006 ACCAACAGAGTGCTGAAGCC 60.536 55.000 0.00 0.00 45.17 4.35
4282 4668 2.630889 TCATTTGGGGTTTGGCCATA 57.369 45.000 6.09 0.00 39.65 2.74
4286 4672 2.630889 TTGGGGTTTGGCCATATCAA 57.369 45.000 6.09 5.91 39.65 2.57
4304 4690 7.538678 CCATATCAAGCTTTACACACAAACTTC 59.461 37.037 0.00 0.00 0.00 3.01
4330 4716 4.207224 GCATATATGGATTTCGACGATCGG 59.793 45.833 20.98 2.12 40.88 4.18
4350 4736 2.751259 GGCAGTTCAGCATCATGAAGAA 59.249 45.455 0.00 0.00 39.78 2.52
4355 4741 4.331992 AGTTCAGCATCATGAAGAACGATG 59.668 41.667 19.15 6.87 42.39 3.84
4356 4742 4.127566 TCAGCATCATGAAGAACGATGA 57.872 40.909 0.00 0.00 39.09 2.92
4357 4743 4.700700 TCAGCATCATGAAGAACGATGAT 58.299 39.130 0.00 0.00 39.43 2.45
4358 4744 5.846203 TCAGCATCATGAAGAACGATGATA 58.154 37.500 0.00 0.00 37.23 2.15
4359 4745 5.924825 TCAGCATCATGAAGAACGATGATAG 59.075 40.000 0.00 0.00 37.23 2.08
4360 4746 5.924825 CAGCATCATGAAGAACGATGATAGA 59.075 40.000 0.00 0.00 37.23 1.98
4361 4747 6.590677 CAGCATCATGAAGAACGATGATAGAT 59.409 38.462 0.00 0.00 37.23 1.98
4362 4748 7.758528 CAGCATCATGAAGAACGATGATAGATA 59.241 37.037 0.00 0.00 37.23 1.98
4363 4749 8.309656 AGCATCATGAAGAACGATGATAGATAA 58.690 33.333 0.00 0.00 37.23 1.75
4364 4750 9.096160 GCATCATGAAGAACGATGATAGATAAT 57.904 33.333 0.00 0.00 37.23 1.28
4437 4823 7.040409 CCTGGGCAGTAATTCTCATATTTAACC 60.040 40.741 0.00 0.00 0.00 2.85
4458 4844 2.071778 ACCACACAAGAATGCAACCT 57.928 45.000 0.00 0.00 0.00 3.50
4537 4924 8.408601 AGCTCATGAAAATATACCACAAATGAC 58.591 33.333 0.00 0.00 0.00 3.06
4624 5012 6.868864 CAGAAGTGCATAAACAGTACTACAGT 59.131 38.462 0.00 0.00 31.53 3.55
4625 5013 8.027189 CAGAAGTGCATAAACAGTACTACAGTA 58.973 37.037 0.00 0.00 31.53 2.74
4626 5014 8.750298 AGAAGTGCATAAACAGTACTACAGTAT 58.250 33.333 0.00 0.00 31.53 2.12
4627 5015 8.928270 AAGTGCATAAACAGTACTACAGTATC 57.072 34.615 0.00 0.00 31.53 2.24
4628 5016 8.063200 AGTGCATAAACAGTACTACAGTATCA 57.937 34.615 0.00 0.00 32.54 2.15
4629 5017 7.974501 AGTGCATAAACAGTACTACAGTATCAC 59.025 37.037 0.00 0.21 32.54 3.06
4630 5018 7.758076 GTGCATAAACAGTACTACAGTATCACA 59.242 37.037 0.00 0.00 32.54 3.58
4631 5019 7.973944 TGCATAAACAGTACTACAGTATCACAG 59.026 37.037 0.00 0.00 32.54 3.66
4632 5020 8.188799 GCATAAACAGTACTACAGTATCACAGA 58.811 37.037 0.00 0.00 32.54 3.41
4635 5023 7.939784 AACAGTACTACAGTATCACAGATCA 57.060 36.000 0.00 0.00 32.54 2.92
4636 5024 7.939784 ACAGTACTACAGTATCACAGATCAA 57.060 36.000 0.00 0.00 32.54 2.57
4637 5025 8.349568 ACAGTACTACAGTATCACAGATCAAA 57.650 34.615 0.00 0.00 32.54 2.69
4638 5026 8.803235 ACAGTACTACAGTATCACAGATCAAAA 58.197 33.333 0.00 0.00 32.54 2.44
4639 5027 9.809096 CAGTACTACAGTATCACAGATCAAAAT 57.191 33.333 0.00 0.00 32.54 1.82
4640 5028 9.809096 AGTACTACAGTATCACAGATCAAAATG 57.191 33.333 0.00 0.00 32.54 2.32
4641 5029 9.587772 GTACTACAGTATCACAGATCAAAATGT 57.412 33.333 0.00 0.00 32.54 2.71
4643 5031 9.507329 ACTACAGTATCACAGATCAAAATGTTT 57.493 29.630 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.372350 CGTGGAAGCGTTCAAAAGAAC 58.628 47.619 0.00 0.00 0.00 3.01
9 10 1.268335 GCGTGGAAGCGTTCAAAAGAA 60.268 47.619 0.00 0.00 0.00 2.52
10 11 0.306533 GCGTGGAAGCGTTCAAAAGA 59.693 50.000 0.00 0.00 0.00 2.52
11 12 2.783440 GCGTGGAAGCGTTCAAAAG 58.217 52.632 0.00 0.00 0.00 2.27
20 21 1.324736 CTTTGTAGATCGCGTGGAAGC 59.675 52.381 5.77 0.00 0.00 3.86
21 22 2.345641 CACTTTGTAGATCGCGTGGAAG 59.654 50.000 5.77 4.95 0.00 3.46
22 23 2.333926 CACTTTGTAGATCGCGTGGAA 58.666 47.619 5.77 0.00 0.00 3.53
23 24 1.403647 CCACTTTGTAGATCGCGTGGA 60.404 52.381 5.77 0.00 43.39 4.02
24 25 0.999406 CCACTTTGTAGATCGCGTGG 59.001 55.000 5.77 0.00 36.36 4.94
25 26 1.710013 ACCACTTTGTAGATCGCGTG 58.290 50.000 5.77 0.00 0.00 5.34
26 27 3.119245 ACATACCACTTTGTAGATCGCGT 60.119 43.478 5.77 0.00 0.00 6.01
27 28 3.444916 ACATACCACTTTGTAGATCGCG 58.555 45.455 0.00 0.00 0.00 5.87
28 29 5.828747 TCTACATACCACTTTGTAGATCGC 58.171 41.667 8.33 0.00 45.71 4.58
33 34 7.712639 AGATTGCATCTACATACCACTTTGTAG 59.287 37.037 4.16 4.16 44.28 2.74
34 35 7.564793 AGATTGCATCTACATACCACTTTGTA 58.435 34.615 0.00 0.00 38.00 2.41
35 36 6.418101 AGATTGCATCTACATACCACTTTGT 58.582 36.000 0.00 0.00 38.00 2.83
36 37 6.765036 AGAGATTGCATCTACATACCACTTTG 59.235 38.462 0.00 0.00 40.38 2.77
37 38 6.893583 AGAGATTGCATCTACATACCACTTT 58.106 36.000 0.00 0.00 40.38 2.66
38 39 6.326064 AGAGAGATTGCATCTACATACCACTT 59.674 38.462 0.00 0.00 40.38 3.16
39 40 5.837979 AGAGAGATTGCATCTACATACCACT 59.162 40.000 0.00 0.00 40.38 4.00
40 41 6.095432 AGAGAGATTGCATCTACATACCAC 57.905 41.667 0.00 0.00 40.38 4.16
41 42 5.244851 GGAGAGAGATTGCATCTACATACCA 59.755 44.000 0.00 0.00 40.38 3.25
42 43 5.337169 GGGAGAGAGATTGCATCTACATACC 60.337 48.000 0.00 0.00 40.38 2.73
43 44 5.244851 TGGGAGAGAGATTGCATCTACATAC 59.755 44.000 0.00 0.00 40.38 2.39
44 45 5.397360 TGGGAGAGAGATTGCATCTACATA 58.603 41.667 0.00 0.00 40.38 2.29
45 46 4.229639 TGGGAGAGAGATTGCATCTACAT 58.770 43.478 0.00 0.00 40.38 2.29
46 47 3.646534 TGGGAGAGAGATTGCATCTACA 58.353 45.455 0.00 0.00 40.38 2.74
47 48 4.282957 TCATGGGAGAGAGATTGCATCTAC 59.717 45.833 0.00 0.00 40.38 2.59
48 49 4.282957 GTCATGGGAGAGAGATTGCATCTA 59.717 45.833 0.00 0.00 40.38 1.98
49 50 3.071312 GTCATGGGAGAGAGATTGCATCT 59.929 47.826 0.00 0.00 43.70 2.90
50 51 3.071312 AGTCATGGGAGAGAGATTGCATC 59.929 47.826 0.00 0.00 0.00 3.91
51 52 3.047115 AGTCATGGGAGAGAGATTGCAT 58.953 45.455 0.00 0.00 0.00 3.96
52 53 2.433604 GAGTCATGGGAGAGAGATTGCA 59.566 50.000 0.00 0.00 0.00 4.08
53 54 2.545532 CGAGTCATGGGAGAGAGATTGC 60.546 54.545 0.00 0.00 0.00 3.56
54 55 2.692557 ACGAGTCATGGGAGAGAGATTG 59.307 50.000 0.00 0.00 0.00 2.67
55 56 3.025322 ACGAGTCATGGGAGAGAGATT 57.975 47.619 0.00 0.00 0.00 2.40
56 57 2.692557 CAACGAGTCATGGGAGAGAGAT 59.307 50.000 0.00 0.00 0.00 2.75
57 58 2.095461 CAACGAGTCATGGGAGAGAGA 58.905 52.381 0.00 0.00 0.00 3.10
58 59 1.470632 GCAACGAGTCATGGGAGAGAG 60.471 57.143 0.00 0.00 0.00 3.20
59 60 0.532573 GCAACGAGTCATGGGAGAGA 59.467 55.000 0.00 0.00 0.00 3.10
60 61 0.534412 AGCAACGAGTCATGGGAGAG 59.466 55.000 0.00 0.00 0.00 3.20
61 62 0.976641 AAGCAACGAGTCATGGGAGA 59.023 50.000 0.00 0.00 0.00 3.71
62 63 2.166459 TCTAAGCAACGAGTCATGGGAG 59.834 50.000 0.00 0.00 0.00 4.30
63 64 2.176045 TCTAAGCAACGAGTCATGGGA 58.824 47.619 0.00 0.00 0.00 4.37
64 65 2.672961 TCTAAGCAACGAGTCATGGG 57.327 50.000 0.00 0.00 0.00 4.00
65 66 3.785486 TCATCTAAGCAACGAGTCATGG 58.215 45.455 0.00 0.00 0.00 3.66
66 67 4.867047 AGTTCATCTAAGCAACGAGTCATG 59.133 41.667 0.00 0.00 0.00 3.07
67 68 5.078411 AGTTCATCTAAGCAACGAGTCAT 57.922 39.130 0.00 0.00 0.00 3.06
68 69 4.022329 TGAGTTCATCTAAGCAACGAGTCA 60.022 41.667 0.00 0.00 0.00 3.41
69 70 4.486090 TGAGTTCATCTAAGCAACGAGTC 58.514 43.478 0.00 0.00 0.00 3.36
70 71 4.521130 TGAGTTCATCTAAGCAACGAGT 57.479 40.909 0.00 0.00 0.00 4.18
71 72 6.499172 TCTATGAGTTCATCTAAGCAACGAG 58.501 40.000 0.00 0.00 37.76 4.18
72 73 6.451064 TCTATGAGTTCATCTAAGCAACGA 57.549 37.500 0.00 0.00 37.76 3.85
73 74 6.145209 CCATCTATGAGTTCATCTAAGCAACG 59.855 42.308 0.00 0.00 37.76 4.10
74 75 7.212976 TCCATCTATGAGTTCATCTAAGCAAC 58.787 38.462 0.00 0.00 37.76 4.17
75 76 7.365497 TCCATCTATGAGTTCATCTAAGCAA 57.635 36.000 0.00 0.00 37.76 3.91
76 77 6.983906 TCCATCTATGAGTTCATCTAAGCA 57.016 37.500 0.00 0.00 37.76 3.91
77 78 7.839907 AGATCCATCTATGAGTTCATCTAAGC 58.160 38.462 0.00 0.00 37.76 3.09
78 79 9.642327 CAAGATCCATCTATGAGTTCATCTAAG 57.358 37.037 0.00 0.00 35.76 2.18
79 80 8.591940 CCAAGATCCATCTATGAGTTCATCTAA 58.408 37.037 0.00 0.00 35.76 2.10
80 81 7.732140 ACCAAGATCCATCTATGAGTTCATCTA 59.268 37.037 0.00 0.00 35.76 1.98
81 82 6.558014 ACCAAGATCCATCTATGAGTTCATCT 59.442 38.462 0.00 0.00 35.76 2.90
82 83 6.649973 CACCAAGATCCATCTATGAGTTCATC 59.350 42.308 0.00 0.00 35.76 2.92
83 84 6.328410 TCACCAAGATCCATCTATGAGTTCAT 59.672 38.462 0.00 0.00 35.76 2.57
84 85 5.662657 TCACCAAGATCCATCTATGAGTTCA 59.337 40.000 0.00 0.00 35.76 3.18
85 86 6.166984 TCACCAAGATCCATCTATGAGTTC 57.833 41.667 0.00 0.00 35.76 3.01
86 87 6.566079 TTCACCAAGATCCATCTATGAGTT 57.434 37.500 0.00 0.00 35.76 3.01
87 88 6.566079 TTTCACCAAGATCCATCTATGAGT 57.434 37.500 0.00 0.00 35.76 3.41
88 89 7.222161 TGATTTCACCAAGATCCATCTATGAG 58.778 38.462 0.00 0.00 35.76 2.90
89 90 7.140522 TGATTTCACCAAGATCCATCTATGA 57.859 36.000 0.00 0.00 35.76 2.15
90 91 7.997773 ATGATTTCACCAAGATCCATCTATG 57.002 36.000 0.00 0.00 35.76 2.23
91 92 8.327271 CCTATGATTTCACCAAGATCCATCTAT 58.673 37.037 0.00 0.00 35.76 1.98
92 93 7.513781 TCCTATGATTTCACCAAGATCCATCTA 59.486 37.037 0.00 0.00 35.76 1.98
93 94 6.331042 TCCTATGATTTCACCAAGATCCATCT 59.669 38.462 0.00 0.00 39.22 2.90
94 95 6.537355 TCCTATGATTTCACCAAGATCCATC 58.463 40.000 0.00 0.00 0.00 3.51
95 96 6.520021 TCCTATGATTTCACCAAGATCCAT 57.480 37.500 0.00 0.00 0.00 3.41
96 97 5.974156 TCCTATGATTTCACCAAGATCCA 57.026 39.130 0.00 0.00 0.00 3.41
97 98 7.830099 ATTTCCTATGATTTCACCAAGATCC 57.170 36.000 0.00 0.00 0.00 3.36
288 289 8.697067 GCGTAAAATATCGTGATACTTACACAT 58.303 33.333 16.30 0.00 38.04 3.21
289 290 7.701501 TGCGTAAAATATCGTGATACTTACACA 59.298 33.333 16.30 12.61 38.04 3.72
290 291 8.053411 TGCGTAAAATATCGTGATACTTACAC 57.947 34.615 16.30 11.10 31.21 2.90
296 297 9.338291 TCTTAGATGCGTAAAATATCGTGATAC 57.662 33.333 0.00 0.00 0.00 2.24
299 300 6.639686 GGTCTTAGATGCGTAAAATATCGTGA 59.360 38.462 0.00 0.00 0.00 4.35
323 324 7.067532 TGCGTTTTGTATACAAGTTATCAGG 57.932 36.000 17.36 6.79 37.15 3.86
354 355 2.838637 ACAACACCCCCTTTCAAAGA 57.161 45.000 0.00 0.00 0.00 2.52
355 356 3.562182 ACTACAACACCCCCTTTCAAAG 58.438 45.455 0.00 0.00 0.00 2.77
371 372 8.863086 ACTTACAGGTACTATGTTTCAACTACA 58.137 33.333 9.10 0.00 36.02 2.74
374 375 7.234988 AGGACTTACAGGTACTATGTTTCAACT 59.765 37.037 9.10 2.50 36.02 3.16
390 391 9.968870 GAGGAAGTATTTACATAGGACTTACAG 57.031 37.037 0.00 0.00 34.05 2.74
398 399 6.264744 TCGGACTGAGGAAGTATTTACATAGG 59.735 42.308 0.00 0.00 40.07 2.57
410 411 3.127425 ACCTTTTTCGGACTGAGGAAG 57.873 47.619 6.70 0.00 0.00 3.46
411 412 3.211045 CAACCTTTTTCGGACTGAGGAA 58.789 45.455 6.70 0.00 0.00 3.36
412 413 2.171870 ACAACCTTTTTCGGACTGAGGA 59.828 45.455 6.70 0.00 0.00 3.71
413 414 2.548480 GACAACCTTTTTCGGACTGAGG 59.452 50.000 0.00 0.00 0.00 3.86
414 415 2.548480 GGACAACCTTTTTCGGACTGAG 59.452 50.000 0.00 0.00 0.00 3.35
415 416 2.171870 AGGACAACCTTTTTCGGACTGA 59.828 45.455 0.00 0.00 45.36 3.41
416 417 2.572290 AGGACAACCTTTTTCGGACTG 58.428 47.619 0.00 0.00 45.36 3.51
427 428 7.085481 GGATACATCCATTTGAAGGACAACCT 61.085 42.308 3.26 0.00 46.72 3.50
428 429 5.067805 GGATACATCCATTTGAAGGACAACC 59.932 44.000 3.26 0.00 46.38 3.77
429 430 6.136541 GGATACATCCATTTGAAGGACAAC 57.863 41.667 3.26 0.00 46.38 3.32
447 448 4.770795 AGCACTAACTTGATGGTGGATAC 58.229 43.478 0.00 0.00 0.00 2.24
448 449 5.897250 TCTAGCACTAACTTGATGGTGGATA 59.103 40.000 0.00 0.00 0.00 2.59
449 450 4.716784 TCTAGCACTAACTTGATGGTGGAT 59.283 41.667 0.00 0.00 0.00 3.41
450 451 4.093743 TCTAGCACTAACTTGATGGTGGA 58.906 43.478 0.00 0.00 0.00 4.02
451 452 4.471904 TCTAGCACTAACTTGATGGTGG 57.528 45.455 0.00 0.00 0.00 4.61
452 453 6.573434 TGTATCTAGCACTAACTTGATGGTG 58.427 40.000 0.00 0.00 34.60 4.17
453 454 6.791867 TGTATCTAGCACTAACTTGATGGT 57.208 37.500 0.00 0.00 34.60 3.55
454 455 7.928167 TGAATGTATCTAGCACTAACTTGATGG 59.072 37.037 0.00 0.00 34.60 3.51
455 456 8.877808 TGAATGTATCTAGCACTAACTTGATG 57.122 34.615 0.00 0.00 34.60 3.07
457 458 9.890629 AAATGAATGTATCTAGCACTAACTTGA 57.109 29.630 0.00 0.00 0.00 3.02
458 459 9.926751 CAAATGAATGTATCTAGCACTAACTTG 57.073 33.333 0.00 0.00 0.00 3.16
459 460 9.890629 TCAAATGAATGTATCTAGCACTAACTT 57.109 29.630 0.00 0.00 0.00 2.66
460 461 9.539825 CTCAAATGAATGTATCTAGCACTAACT 57.460 33.333 0.00 0.00 0.00 2.24
461 462 8.768955 CCTCAAATGAATGTATCTAGCACTAAC 58.231 37.037 0.00 0.00 0.00 2.34
462 463 7.933577 CCCTCAAATGAATGTATCTAGCACTAA 59.066 37.037 0.00 0.00 0.00 2.24
463 464 7.290014 TCCCTCAAATGAATGTATCTAGCACTA 59.710 37.037 0.00 0.00 0.00 2.74
464 465 6.100279 TCCCTCAAATGAATGTATCTAGCACT 59.900 38.462 0.00 0.00 0.00 4.40
465 466 6.203723 GTCCCTCAAATGAATGTATCTAGCAC 59.796 42.308 0.00 0.00 0.00 4.40
466 467 6.126796 TGTCCCTCAAATGAATGTATCTAGCA 60.127 38.462 0.00 0.00 0.00 3.49
467 468 6.291377 TGTCCCTCAAATGAATGTATCTAGC 58.709 40.000 0.00 0.00 0.00 3.42
468 469 7.041508 GCTTGTCCCTCAAATGAATGTATCTAG 60.042 40.741 0.00 0.00 35.48 2.43
469 470 6.767902 GCTTGTCCCTCAAATGAATGTATCTA 59.232 38.462 0.00 0.00 35.48 1.98
470 471 5.591877 GCTTGTCCCTCAAATGAATGTATCT 59.408 40.000 0.00 0.00 35.48 1.98
471 472 5.591877 AGCTTGTCCCTCAAATGAATGTATC 59.408 40.000 0.00 0.00 35.48 2.24
472 473 5.513233 AGCTTGTCCCTCAAATGAATGTAT 58.487 37.500 0.00 0.00 35.48 2.29
473 474 4.922206 AGCTTGTCCCTCAAATGAATGTA 58.078 39.130 0.00 0.00 35.48 2.29
474 475 3.771216 AGCTTGTCCCTCAAATGAATGT 58.229 40.909 0.00 0.00 35.48 2.71
475 476 4.796038 AAGCTTGTCCCTCAAATGAATG 57.204 40.909 0.00 0.00 35.48 2.67
476 477 5.279657 GGAAAAGCTTGTCCCTCAAATGAAT 60.280 40.000 23.49 0.00 35.48 2.57
477 478 4.039124 GGAAAAGCTTGTCCCTCAAATGAA 59.961 41.667 23.49 0.00 35.48 2.57
478 479 3.573967 GGAAAAGCTTGTCCCTCAAATGA 59.426 43.478 23.49 0.00 35.48 2.57
479 480 3.612479 CGGAAAAGCTTGTCCCTCAAATG 60.612 47.826 26.94 9.69 35.48 2.32
480 481 2.558359 CGGAAAAGCTTGTCCCTCAAAT 59.442 45.455 26.94 0.00 35.48 2.32
481 482 1.953686 CGGAAAAGCTTGTCCCTCAAA 59.046 47.619 26.94 0.00 35.48 2.69
482 483 1.142060 TCGGAAAAGCTTGTCCCTCAA 59.858 47.619 26.94 9.82 34.61 3.02
483 484 0.762418 TCGGAAAAGCTTGTCCCTCA 59.238 50.000 26.94 10.76 0.00 3.86
484 485 1.535896 GTTCGGAAAAGCTTGTCCCTC 59.464 52.381 26.94 14.84 0.00 4.30
485 486 1.605753 GTTCGGAAAAGCTTGTCCCT 58.394 50.000 26.94 0.00 0.00 4.20
486 487 0.237498 CGTTCGGAAAAGCTTGTCCC 59.763 55.000 26.94 13.97 0.00 4.46
487 488 0.237498 CCGTTCGGAAAAGCTTGTCC 59.763 55.000 24.00 24.00 0.00 4.02
488 489 1.194772 CTCCGTTCGGAAAAGCTTGTC 59.805 52.381 14.79 8.23 33.41 3.18
489 490 1.226746 CTCCGTTCGGAAAAGCTTGT 58.773 50.000 14.79 0.00 33.41 3.16
490 491 0.517316 CCTCCGTTCGGAAAAGCTTG 59.483 55.000 14.79 1.97 33.41 4.01
491 492 0.605589 CCCTCCGTTCGGAAAAGCTT 60.606 55.000 14.79 0.00 33.41 3.74
492 493 1.003718 CCCTCCGTTCGGAAAAGCT 60.004 57.895 14.79 0.00 33.41 3.74
493 494 1.004200 TCCCTCCGTTCGGAAAAGC 60.004 57.895 14.79 0.00 33.41 3.51
494 495 0.320697 ACTCCCTCCGTTCGGAAAAG 59.679 55.000 14.79 13.38 33.41 2.27
495 496 1.547372 CTACTCCCTCCGTTCGGAAAA 59.453 52.381 14.79 3.16 33.41 2.29
496 497 1.180029 CTACTCCCTCCGTTCGGAAA 58.820 55.000 14.79 3.49 33.41 3.13
497 498 1.318158 GCTACTCCCTCCGTTCGGAA 61.318 60.000 14.79 0.04 33.41 4.30
498 499 1.751927 GCTACTCCCTCCGTTCGGA 60.752 63.158 13.34 13.34 0.00 4.55
499 500 2.050350 TGCTACTCCCTCCGTTCGG 61.050 63.158 4.74 4.74 0.00 4.30
500 501 1.139095 GTGCTACTCCCTCCGTTCG 59.861 63.158 0.00 0.00 0.00 3.95
501 502 1.139095 CGTGCTACTCCCTCCGTTC 59.861 63.158 0.00 0.00 0.00 3.95
502 503 2.348888 CCGTGCTACTCCCTCCGTT 61.349 63.158 0.00 0.00 0.00 4.44
503 504 2.202236 TACCGTGCTACTCCCTCCGT 62.202 60.000 0.00 0.00 0.00 4.69
504 505 1.033746 TTACCGTGCTACTCCCTCCG 61.034 60.000 0.00 0.00 0.00 4.63
505 506 0.459078 GTTACCGTGCTACTCCCTCC 59.541 60.000 0.00 0.00 0.00 4.30
506 507 1.472188 AGTTACCGTGCTACTCCCTC 58.528 55.000 0.00 0.00 0.00 4.30
507 508 1.934410 AAGTTACCGTGCTACTCCCT 58.066 50.000 0.00 0.00 0.00 4.20
508 509 2.478539 CGTAAGTTACCGTGCTACTCCC 60.479 54.545 7.45 0.00 0.00 4.30
509 510 2.790387 CGTAAGTTACCGTGCTACTCC 58.210 52.381 7.45 0.00 0.00 3.85
510 511 2.180397 GCGTAAGTTACCGTGCTACTC 58.820 52.381 7.45 0.00 41.68 2.59
511 512 1.541147 TGCGTAAGTTACCGTGCTACT 59.459 47.619 7.45 0.00 41.68 2.57
512 513 1.981254 TGCGTAAGTTACCGTGCTAC 58.019 50.000 7.45 0.00 41.68 3.58
513 514 2.327568 GTTGCGTAAGTTACCGTGCTA 58.672 47.619 7.45 0.19 41.68 3.49
514 515 1.142474 GTTGCGTAAGTTACCGTGCT 58.858 50.000 7.45 0.00 41.68 4.40
515 516 0.164432 GGTTGCGTAAGTTACCGTGC 59.836 55.000 7.45 6.02 41.68 5.34
535 536 1.470098 GCACACAAGTTATCTGGCCTG 59.530 52.381 3.32 2.92 0.00 4.85
538 539 1.438651 TCGCACACAAGTTATCTGGC 58.561 50.000 0.00 0.00 0.00 4.85
541 542 4.827692 TGGTATTCGCACACAAGTTATCT 58.172 39.130 0.00 0.00 0.00 1.98
554 555 6.199393 GGTTCAAAGTAATCATGGTATTCGC 58.801 40.000 0.00 0.00 0.00 4.70
566 567 4.376225 TTTCCCCTCGGTTCAAAGTAAT 57.624 40.909 0.00 0.00 0.00 1.89
568 569 3.618019 CGATTTCCCCTCGGTTCAAAGTA 60.618 47.826 0.00 0.00 32.58 2.24
576 577 0.615544 TACCACGATTTCCCCTCGGT 60.616 55.000 0.00 0.00 40.37 4.69
577 578 0.538118 TTACCACGATTTCCCCTCGG 59.462 55.000 0.00 0.00 40.37 4.63
578 579 2.614829 ATTACCACGATTTCCCCTCG 57.385 50.000 0.00 0.00 41.77 4.63
624 625 8.101419 AGAGAAAACTAATCGTATTGACCCTTT 58.899 33.333 0.00 0.00 0.00 3.11
635 636 7.116519 GTTGCTCAACTAGAGAAAACTAATCGT 59.883 37.037 0.00 0.00 43.61 3.73
636 637 7.116376 TGTTGCTCAACTAGAGAAAACTAATCG 59.884 37.037 13.16 0.00 43.61 3.34
637 638 8.311650 TGTTGCTCAACTAGAGAAAACTAATC 57.688 34.615 13.16 0.00 43.61 1.75
638 639 8.677148 TTGTTGCTCAACTAGAGAAAACTAAT 57.323 30.769 13.16 0.00 43.61 1.73
639 640 8.500753 TTTGTTGCTCAACTAGAGAAAACTAA 57.499 30.769 13.16 3.23 43.61 2.24
640 641 8.677148 ATTTGTTGCTCAACTAGAGAAAACTA 57.323 30.769 13.16 0.00 43.61 2.24
641 642 7.255277 GGATTTGTTGCTCAACTAGAGAAAACT 60.255 37.037 13.16 0.00 43.61 2.66
642 643 6.858478 GGATTTGTTGCTCAACTAGAGAAAAC 59.142 38.462 13.16 3.11 43.61 2.43
651 652 5.011023 CCCTTTAAGGATTTGTTGCTCAACT 59.989 40.000 13.36 0.00 38.76 3.16
672 673 0.106719 CACCACAACCAACTCACCCT 60.107 55.000 0.00 0.00 0.00 4.34
702 703 1.729267 AACCCACAACTCCCTGGCAT 61.729 55.000 0.00 0.00 0.00 4.40
705 706 1.302511 CGAACCCACAACTCCCTGG 60.303 63.158 0.00 0.00 0.00 4.45
713 714 1.072505 GCTTCTCCCGAACCCACAA 59.927 57.895 0.00 0.00 0.00 3.33
734 784 2.694760 GCAGGCTTGCCCGAGAAAG 61.695 63.158 10.18 0.00 44.74 2.62
758 808 2.822643 ATCCTGCCTCCTCCCGAACA 62.823 60.000 0.00 0.00 0.00 3.18
763 813 1.627834 CTATTGATCCTGCCTCCTCCC 59.372 57.143 0.00 0.00 0.00 4.30
765 815 2.614259 TCCTATTGATCCTGCCTCCTC 58.386 52.381 0.00 0.00 0.00 3.71
766 816 2.803285 TCCTATTGATCCTGCCTCCT 57.197 50.000 0.00 0.00 0.00 3.69
768 818 2.708325 ACCTTCCTATTGATCCTGCCTC 59.292 50.000 0.00 0.00 0.00 4.70
769 819 2.441001 CACCTTCCTATTGATCCTGCCT 59.559 50.000 0.00 0.00 0.00 4.75
771 821 3.845781 TCACCTTCCTATTGATCCTGC 57.154 47.619 0.00 0.00 0.00 4.85
772 822 4.039730 ACGATCACCTTCCTATTGATCCTG 59.960 45.833 5.46 0.00 41.75 3.86
774 824 4.608948 ACGATCACCTTCCTATTGATCC 57.391 45.455 5.46 0.00 41.75 3.36
781 831 4.091549 AGTACCAAACGATCACCTTCCTA 58.908 43.478 0.00 0.00 0.00 2.94
782 832 2.904434 AGTACCAAACGATCACCTTCCT 59.096 45.455 0.00 0.00 0.00 3.36
783 833 3.329929 AGTACCAAACGATCACCTTCC 57.670 47.619 0.00 0.00 0.00 3.46
786 836 6.056884 TGTAAAAAGTACCAAACGATCACCT 58.943 36.000 0.00 0.00 0.00 4.00
787 837 6.303021 TGTAAAAAGTACCAAACGATCACC 57.697 37.500 0.00 0.00 0.00 4.02
789 839 7.571613 CGGATTGTAAAAAGTACCAAACGATCA 60.572 37.037 0.00 0.00 31.95 2.92
798 848 3.502979 TGTGGCGGATTGTAAAAAGTACC 59.497 43.478 0.00 0.00 0.00 3.34
799 849 4.469552 GTGTGGCGGATTGTAAAAAGTAC 58.530 43.478 0.00 0.00 0.00 2.73
814 864 0.029700 TATATGTCGACCGTGTGGCG 59.970 55.000 14.12 0.00 39.70 5.69
857 907 5.862924 TGGCGACAATTTTTCTCTCTAAG 57.137 39.130 0.00 0.00 37.44 2.18
871 921 7.285226 CTGGTAACCATGAATTTGGCGACAA 62.285 44.000 0.00 0.00 40.20 3.18
872 922 2.490115 GGTAACCATGAATTTGGCGACA 59.510 45.455 0.00 0.00 40.68 4.35
873 923 2.490115 TGGTAACCATGAATTTGGCGAC 59.510 45.455 0.00 0.00 40.68 5.19
874 924 2.752354 CTGGTAACCATGAATTTGGCGA 59.248 45.455 0.00 0.00 40.68 5.54
875 925 2.735126 GCTGGTAACCATGAATTTGGCG 60.735 50.000 0.00 0.00 40.68 5.69
920 976 1.003545 CTCAACTTCACCTGCACAACG 60.004 52.381 0.00 0.00 0.00 4.10
1212 1270 2.760385 GAGGGTCGGGTGGAGAGG 60.760 72.222 0.00 0.00 0.00 3.69
1214 1272 3.273654 AGGAGGGTCGGGTGGAGA 61.274 66.667 0.00 0.00 0.00 3.71
1223 1281 2.524640 GGATCGGGGAGGAGGGTC 60.525 72.222 0.00 0.00 0.00 4.46
1224 1282 4.173701 GGGATCGGGGAGGAGGGT 62.174 72.222 0.00 0.00 0.00 4.34
1632 1963 4.617520 TTGGCGCCGTTGCTGAGA 62.618 61.111 23.90 0.00 34.43 3.27
1689 2020 0.108089 GGAAAAGGGCGAGAGAGGTC 60.108 60.000 0.00 0.00 0.00 3.85
1706 2037 4.342092 TCAGATCATTCATTAGTCTGCGGA 59.658 41.667 0.00 0.00 36.97 5.54
1712 2044 7.492524 TGTGGTACTCAGATCATTCATTAGTC 58.507 38.462 0.00 0.00 0.00 2.59
1719 2051 8.580720 ACTGTATATGTGGTACTCAGATCATTC 58.419 37.037 0.00 0.00 35.37 2.67
1728 2060 9.894783 CTACATTGTACTGTATATGTGGTACTC 57.105 37.037 19.93 0.00 36.48 2.59
1731 2063 8.999905 TCCTACATTGTACTGTATATGTGGTA 57.000 34.615 19.93 8.59 33.58 3.25
1732 2064 7.907841 TCCTACATTGTACTGTATATGTGGT 57.092 36.000 19.93 6.82 33.58 4.16
1741 2073 5.529800 GTGGTGTTTTCCTACATTGTACTGT 59.470 40.000 0.00 0.00 0.00 3.55
1742 2074 5.763204 AGTGGTGTTTTCCTACATTGTACTG 59.237 40.000 0.00 0.00 0.00 2.74
1744 2076 5.107220 CGAGTGGTGTTTTCCTACATTGTAC 60.107 44.000 0.00 0.00 0.00 2.90
1767 2100 3.594603 AGGGAACACTCACATTCTACG 57.405 47.619 0.00 0.00 0.00 3.51
1769 2102 7.255836 CGGATTATAGGGAACACTCACATTCTA 60.256 40.741 0.00 0.00 0.00 2.10
1784 2117 3.497262 GGCTTTTCGAACGGATTATAGGG 59.503 47.826 0.00 0.00 0.00 3.53
1785 2118 4.211374 CAGGCTTTTCGAACGGATTATAGG 59.789 45.833 0.00 0.00 0.00 2.57
1787 2120 5.013568 TCAGGCTTTTCGAACGGATTATA 57.986 39.130 0.00 0.00 0.00 0.98
1794 2127 6.019075 TGTTCATATATCAGGCTTTTCGAACG 60.019 38.462 0.00 0.00 33.47 3.95
1800 2133 9.407380 TGTTATGTGTTCATATATCAGGCTTTT 57.593 29.630 0.00 0.00 36.57 2.27
1916 2278 8.766994 ATTGTATTCAGTAATACCTTGGCAAT 57.233 30.769 0.00 0.00 44.64 3.56
1970 2332 3.701542 TCTGGGACTACAGAGCACATAAG 59.298 47.826 0.00 0.00 42.26 1.73
1991 2364 7.739295 TCGTCACTATTCAGCTAATGTTTTTC 58.261 34.615 0.00 0.00 0.00 2.29
2042 2415 7.539436 TCACTACTAGAGAAGTAATGTTGCAG 58.461 38.462 0.00 0.00 38.70 4.41
2047 2420 7.982354 GCCAATTCACTACTAGAGAAGTAATGT 59.018 37.037 0.00 0.00 38.70 2.71
2072 2445 8.764524 AAGTATCACGATTTAGAATCATAGGC 57.235 34.615 0.00 0.00 0.00 3.93
2076 2449 9.613428 TCCAAAAGTATCACGATTTAGAATCAT 57.387 29.630 0.00 0.00 0.00 2.45
2104 2478 4.584743 GGGTTGCTAGGAAATAAATGAGGG 59.415 45.833 0.00 0.00 0.00 4.30
2107 2481 7.790782 AAAAGGGTTGCTAGGAAATAAATGA 57.209 32.000 0.00 0.00 0.00 2.57
2180 2555 4.457949 TGAGCATCATATCAATGACATGGC 59.542 41.667 1.33 0.00 44.79 4.40
2198 2573 7.801104 TCCATAGGAAATAAGTGTTATGAGCA 58.199 34.615 0.00 0.00 0.00 4.26
2199 2574 8.854614 ATCCATAGGAAATAAGTGTTATGAGC 57.145 34.615 0.00 0.00 34.34 4.26
2208 2583 5.835280 CCCTGCAAATCCATAGGAAATAAGT 59.165 40.000 0.00 0.00 34.34 2.24
2290 2665 1.588824 CCGCAATGCCAAGAAGCTCA 61.589 55.000 0.00 0.00 0.00 4.26
2342 2723 5.353956 ACAATCACTTACGCATATGCTTGAA 59.646 36.000 24.56 14.19 39.32 2.69
2463 2844 2.435437 AGGAGCAAAACAGCACCATTTT 59.565 40.909 5.28 0.00 46.13 1.82
2548 2929 3.430042 ACAAACAGATCTGCCAGTGAT 57.570 42.857 22.83 0.00 0.00 3.06
3190 3575 9.725019 TCAGCTTGACTAAAAAGATCTATTGAA 57.275 29.630 0.00 0.00 0.00 2.69
3253 3639 4.941873 GGACGGTCTACAGAAAAATTCCAT 59.058 41.667 8.23 0.00 0.00 3.41
3450 3836 9.801873 AATTTGTTCCGTAATAGAATTGAATGG 57.198 29.630 0.00 0.00 0.00 3.16
3466 3852 4.358851 TCTTTCTGTGCAAATTTGTTCCG 58.641 39.130 19.03 9.23 0.00 4.30
3496 3882 1.149288 ACTACAGGAGAGGGGTCACAA 59.851 52.381 0.00 0.00 0.00 3.33
3660 4046 2.157738 CAGCTCCTTTCCTTCCAACAG 58.842 52.381 0.00 0.00 0.00 3.16
3680 4066 1.598130 AAGTGCAACGACTCCAGGC 60.598 57.895 0.00 0.00 45.86 4.85
3756 4142 4.935808 ACGGTACATGAAAGGAATTGAGAC 59.064 41.667 0.00 0.00 0.00 3.36
3760 4146 5.880054 AGAACGGTACATGAAAGGAATTG 57.120 39.130 0.00 0.00 0.00 2.32
3807 4193 2.213499 AGTGGTTGAAGACGAGCAAAG 58.787 47.619 0.00 0.00 39.23 2.77
3995 4381 6.035975 AGGAAAACAAAGCAAGACAAAAATCG 59.964 34.615 0.00 0.00 0.00 3.34
4038 4424 3.498774 AAGTGCATCTTCAGACACCTT 57.501 42.857 0.00 0.00 33.46 3.50
4046 4432 2.229543 GCATCCACAAAGTGCATCTTCA 59.770 45.455 0.00 0.00 38.68 3.02
4091 4477 2.993899 GTGAACTTCGACATGAACCGAT 59.006 45.455 0.00 0.00 34.58 4.18
4189 4575 1.530441 CGCTGATGCTTTCAATGGTCG 60.530 52.381 0.00 0.00 36.97 4.79
4282 4668 5.594317 AGGAAGTTTGTGTGTAAAGCTTGAT 59.406 36.000 0.00 0.00 0.00 2.57
4286 4672 3.066760 GCAGGAAGTTTGTGTGTAAAGCT 59.933 43.478 0.00 0.00 0.00 3.74
4304 4690 4.494484 TCGTCGAAATCCATATATGCAGG 58.506 43.478 7.24 0.00 0.00 4.85
4330 4716 3.727079 CGTTCTTCATGATGCTGAACTGC 60.727 47.826 19.68 0.00 36.03 4.40
4350 4736 9.778741 AAACACCATTGTATTATCTATCATCGT 57.221 29.630 0.00 0.00 33.55 3.73
4437 4823 2.101249 AGGTTGCATTCTTGTGTGGTTG 59.899 45.455 0.00 0.00 0.00 3.77
4458 4844 4.457603 AGGTTGTAAATTGCACGCTGAATA 59.542 37.500 0.00 0.00 0.00 1.75
4529 4916 8.565896 TTGAGCTTGTATTATCTGTCATTTGT 57.434 30.769 0.00 0.00 0.00 2.83
4537 4924 7.716998 ACATACCCTTTGAGCTTGTATTATCTG 59.283 37.037 0.00 0.00 0.00 2.90
4541 4929 6.953101 TGACATACCCTTTGAGCTTGTATTA 58.047 36.000 0.00 0.00 0.00 0.98
4665 5053 7.346471 TGCTTCTTTTGGGCTAGATATAAACT 58.654 34.615 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.